2VBKA

Native tailspike protein of bacteriophage sf6
Total Genus 188
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
511
structure length
511
Chain Sequence
QFGPDLIEQLAQSGKYSQDNTKGDAMIGVKQPLPKAVLRTQHDKNKEAISILDFGVIDDGVTDNYQAIQNAIDAVASLPSGGELFIPASNQAVGYIVGSTLLIPGGVNIRGVGKASQLRAKSGLTGSVLRLSYDSDTIGRYLRNIRVTGNNTCNGIDTNITAEDSVIRQVYGWVFDNVMVNEVETAYLMQGLWHSKFIACQAGTCRVGLHFLGQCVSVSVSSCHFSRGNYSADESFGIRIQPQTYAWSSEAVRSEAIILDSETMCIGFKNAVYVHDCLDLHMEQLDLDYCGSTGVVIENVNGGFSFSNSWIAADADGTEQFTGIYFRTPTSTQSHKIVSGVHINTANKNTAANNQSIAIEQSAIFVFVSGCTLTGDEWAVNIVDINECVSFDKCIFNKPLRYLRSGGVSVTDCYLAGITEVQKPEGRYNTYRGCSGVPSVNGIINVPVAVGATSGSAAIPNPGNLTYRVRSLFGDPASSGDKVSVSGVTINVTRPSPVGVALPSMVEYLAI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords TAILSPIKE-PROTEIN
publication title An intersubunit active site between supercoiled parallel beta helices in the trimeric tailspike endorhamnosidase of Shigella flexneri Phage Sf6.
pubmed doi rcsb
source organism Enterobacteria phage sf6
molecule tags Viral protein
total genus 188
structure length 511
sequence length 511
ec nomenclature
pdb deposition date 2007-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12708 Pectate_lyase_3 Pectate lyase superfamily protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2vbkA00
4OZYA 4NK6A 3FY3A 3VMWA 4XL9A 4XOTA 1O8KA 4Z05A 1AIRA 4XM3A 4XKVA 4MR0A 4OJOA 2VBMA 3WWGA 4PMHA 1XG2A 5C1EA 2X6WA 1O8JA 3EQOA 4XN3A 4U49A 4XLCA 5C1CA 4Z06A 3UW0A 1NHCA 4XOPA 1PE9A 1QCXA 1K5CA 3KRGA 2X6YA 1RMGA 3GQ9A 2NZMA 1IDKA 2NTQA 4OJ6A 3VSUA 2NSTA 1GQ8A 1O88A 2VJJA 1OFMA 1HG8A 2O17A 3LMWA 1QJVA 4OJPA 4YZQA 1O8MA 2EWEA 1H80A 1O8DA 2NT9A 2ODLA 3SUCA 1O8LA 2IQ7A 1IA5A 4U4BA 4Z03A 1PLUA 4URRA 4XMYA 4YZ0A 3JURA 1O8EA 2X85A 1KCDA 3GQAA 3VSTA 1WMRA 4W8QA 4XQFA 4XR6A 1EE6A 1CZFA 2NTPA 3B8YA 1IDJA 2VBKA 1O8GA 4XNFA 2VBEA 4MXNA 2O0VA 4OJLA 2PYHA 4AVZA 4XLAA 4XLEA 2INVA 3B90A 4W8SA 2O0WA 2X6XA 2PECA 2PYGA 3EQNA 4HWVA 3ZSCA 2QY1A 2X3HA 1DBGA 1RWRA 4XN0A 2VJIA 1JRGA 3B4NA 4YEJA 4XKWA 1O8HA 4I84A 2UVEA 3GQ8A 3GQ7A 2NSPA 2INUA 2Z8GA 1PXZA 1O8FA 2BSPA 3T9GA 2NT6A 4YELA 4XORA 1IB4A 4W8TA 1OGMX 3ZPPA 4YZAA 4XONA 1JTAA 1KTWA 1RU4A 5AMVA 1OOCA 2O1DA 4OJ5A 4XLHA 3VMVA 1X0CA 4W8RA 2QXZA 1KCCA 3VSVA 2UVFA 4OZZA 4YZXA 1BN8A 4NK8A 4EW9A 1BHEA 1O8IA 1DBOA 2NTBA 2O04A 4XLFA 4C2LA 3GRHA 1VBLA 1OGOX 1OFLA 2QX3A
chains in the Genus database with same CATH superfamily
3N6ZA 1QQ1A 2O6WA 3PETA 2QZAA 4OZYA 4NK6A 2IOUG 3FY3A 1DABA 3VMWA 4XL9A 4XOTA 2YUHA 1OFDA 1O8KA 2VFPA 4Z05A 1AIRA 4KH3A 4XM3A 2VFNA 4XKVA 4MR0A 4OJOA 2VBMA 3SQVA 3WWGA 4V02C 4YFOA 4PMHA 1XG2A 4YDTA 5C1EA 2X6WA 1O8JA 3EQOA 4XN3A 4U49A 4XLCA 5C1CA 4Z06A 3UW0A 1NHCA 1QA3A 3TH0A 4XOPA 1PE9A 1L1IA 2W7ZA 1QCXA 1K5CA 2BM6A 3KRGA 2X6YA 1RMGA 3GQ9A 3SUCA 2NZMA 1IDKA 2NTQA 4OJ6A 3VSUA 2NSTA 3BH6B 1GQ8A 2VFQA 1OFEA 1O88A 2BM5A 2VJJA 1OFMA 1HG8A 2O17A 3LMWA 1QJVA 3SYJA 1LLWA 4OJPA 1HF2A 1O8MA 1TYWA 4JRAC 2EWEA 4YZQA 3AK5A 1H80A 1KQ5A 1O8DA 1QRBA 2NT9A 1O8LA 2IQ7A 1TSPA 2ODLA 4U4BA 1PLUA 4Z03A 2BM7A 4URRA 1IA5A 4OPWA 4XMYA 5DNSA 2J8KA 1EA0A 4YZ0A 3JURA 1O8EA 2X85A 3JX8A 4OM9A 1KCDA 3GQAA 3VSTA 1WMRA 4W8QA 2BM4A 4XQFA 4XR6A 1EE6A 1CZFA 2NTPA 3B8YA 1IDJA 2VBKA 1O8GA 4XNFA 2XT2A 2VBEA 2XT4A 4MXNA 2J8IA 2O0VA 4OJLA 3ML3A 2B0RA 2VFOA 3H09A 3NB2A 2PYHA 1LM1A 4XLAA 4AVZA 1WXRA 4XLEA 2INVA 3N90A 1QA2A 3PSSA 3B90A 4W8SA 1TYVA 2O0WA 2X6XA 2PECA 2PYGA 3EQNA 4HWVA 3ZSCA 2QY1A 2XTXA 2X3HA 1DBGA 3NAWA 1RWRA 3BH7B 3SY2A 3P4GA 2VJIA 1JRGA 3B4NA 2F3LA 2V5IA 2XC1A 4XN0A 2VFMA 4YEJA 4XKWA 1O8HA 4I84A 1CLWA 2UVEA 3GQ8A 1QRCA 3GQ7A 2XTYA 1TYUA 3RIQA 4YCQA 2NSPA 2INUA 2Z8GA 1PXZA 1O8FA 2BSPA 3PSZA 3T9GA 2NT6A 4YELA 4XORA 1IB4A 2QYUA 4W8TA 1OGMX 3SZEA 2XTWA 4YC5A 3ZPPA 4YZAA 2BX6A 4XONA 1JTAA 1K4ZA 1KTWA 3LJYA 3LYCA 1RU4A 5AMVA 3DU1X 1OOCA 2O1DA 4OJ5A 4XLHA 3VMVA 5JLVC 5JMCB 2G0YA 1X0CA 1LLZA 1K8FA 4W8RA 2QXZA 1KCCA 1QA1A 3VSVA 2UVFA 4OZZA 4YZXA 1BN8A 4NK8A 4EW9A 1BHEA 1O8IA 1DBOA 2NTBA 2O04A 4XLFA 4C2LA 1EZGA 3GRHA 1VBLA 1TYXA 1OGOX 4YEIA 1OFLA 2QX3A
chains in the Genus database with same CATH topology
4OZYA 4NK6A 3FY3A 3VMWA 4XL9A 4XOTA 1O8KA 4Z05A 1AIRA 4XM3A 4XKVA 4MR0A 4OJOA 2VBMA 3WWGA 4PMHA 1XG2A 5C1EA 2X6WA 1O8JA 3EQOA 4XN3A 4U49A 4XLCA 5C1CA 4Z06A 3UW0A 1NHCA 4XOPA 1PE9A 1QCXA 1K5CA 3KRGA 2X6YA 1RMGA 3GQ9A 2NZMA 1IDKA 2NTQA 4OJ6A 3VSUA 2NSTA 1GQ8A 1O88A 2VJJA 1OFMA 1HG8A 2O17A 3LMWA 1QJVA 4OJPA 4YZQA 1O8MA 2EWEA 1H80A 1O8DA 2NT9A 2ODLA 3SUCA 1O8LA 2IQ7A 1IA5A 4U4BA 4Z03A 1PLUA 4URRA 4XMYA 4YZ0A 3JURA 1O8EA 2X85A 1KCDA 3GQAA 3VSTA 1WMRA 4W8QA 4XQFA 4XR6A 1EE6A 1CZFA 2NTPA 3B8YA 1IDJA 2VBKA 1O8GA 4XNFA 2VBEA 4MXNA 2O0VA 4OJLA 2PYHA 4AVZA 4XLAA 4XLEA 2INVA 3B90A 4W8SA 2O0WA 2X6XA 2PECA 2PYGA 3EQNA 4HWVA 3ZSCA 2QY1A 2X3HA 1DBGA 1RWRA 4XN0A 2VJIA 1JRGA 3B4NA 4YEJA 4XKWA 1O8HA 4I84A 2UVEA 3GQ8A 3GQ7A 2NSPA 2INUA 2Z8GA 1PXZA 1O8FA 2BSPA 3T9GA 2NT6A 4YELA 4XORA 1IB4A 4W8TA 1OGMX 3ZPPA 4YZAA 4XONA 1JTAA 1KTWA 1RU4A 5AMVA 1OOCA 2O1DA 4OJ5A 4XLHA 3VMVA 1X0CA 4W8RA 2QXZA 1KCCA 3VSVA 2UVFA 4OZZA 4YZXA 1BN8A 4NK8A 4EW9A 1BHEA 1O8IA 1DBOA 2NTBA 2O04A 4XLFA 4C2LA 3GRHA 1VBLA 1OGOX 1OFLA 2QX3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OZY A;  4NK6 A;  3FY3 A;  3VMW A;  4XL9 A;  4XOT A;  1O8K A;  4Z05 A;  1AIR A;  4XM3 A;  4XKV A;  4MR0 A;  4OJO A;  2VBM A;  3WWG A;  4PMH A;  1XG2 A;  5C1E A;  2X6W A;  1O8J A;  3EQO A;  4XN3 A;  4U49 A;  4XLC A;  5C1C A;  4Z06 A;  3UW0 A;  1NHC A;  4XOP A;  1PE9 A;  1QCX A;  1K5C A;  3KRG A;  2X6Y A;  1RMG A;  3GQ9 A;  2NZM A;  1IDK A;  2NTQ A;  4OJ6 A;  3VSU A;  2NST A;  1GQ8 A;  1O88 A;  2VJJ A;  1OFM A;  1HG8 A;  2O17 A;  3LMW A;  1QJV A;  4OJP A;  4YZQ A;  1O8M A;  2EWE A;  1H80 A;  1O8D A;  2NT9 A;  2ODL A;  3SUC A;  1O8L A;  2IQ7 A;  1IA5 A;  4U4B A;  4Z03 A;  1PLU A;  4URR A;  4XMY A;  4YZ0 A;  3JUR A;  1O8E A;  2X85 A;  1KCD A;  3GQA A;  3VST A;  1WMR A;  4W8Q A;  4XQF A;  4XR6 A;  1EE6 A;  1CZF A;  2NTP A;  3B8Y A;  1IDJ A;  2VBK A;  1O8G A;  4XNF A;  2VBE A;  4MXN A;  2O0V A;  4OJL A;  2PYH A;  4AVZ A;  4XLA A;  4XLE A;  2INV A;  3B90 A;  4W8S A;  2O0W A;  2X6X A;  2PEC A;  2PYG A;  3EQN A;  4HWV A;  3ZSC A;  2QY1 A;  2X3H A;  1DBG A;  1RWR A;  4XN0 A;  2VJI A;  1JRG A;  3B4N A;  4YEJ A;  4XKW A;  1O8H A;  4I84 A;  2UVE A;  3GQ8 A;  3GQ7 A;  2NSP A;  2INU A;  2Z8G A;  1PXZ A;  1O8F A;  2BSP A;  3T9G A;  2NT6 A;  4YEL A;  4XOR A;  1IB4 A;  4W8T A;  1OGM X;  3ZPP A;  4YZA A;  4XON A;  1JTA A;  1KTW A;  1RU4 A;  5AMV A;  1OOC A;  2O1D A;  4OJ5 A;  4XLH A;  3VMV A;  1X0C A;  4W8R A;  2QXZ A;  1KCC A;  3VSV A;  2UVF A;  4OZZ A;  4YZX A;  1BN8 A;  4NK8 A;  4EW9 A;  1BHE A;  1O8I A;  1DBO A;  2NTB A;  2O04 A;  4XLF A;  4C2L A;  3GRH A;  1VBL A;  1OGO X;  1OFL A;  2QX3 A; 
#chains in the Genus database with same CATH topology
 3N6Z A;  1QQ1 A;  2O6W A;  3PET A;  2QZA A;  4OZY A;  4NK6 A;  2IOU G;  3FY3 A;  1DAB A;  3VMW A;  4XL9 A;  4XOT A;  2YUH A;  1OFD A;  1O8K A;  2VFP A;  4Z05 A;  1AIR A;  4KH3 A;  4XM3 A;  2VFN A;  4XKV A;  4MR0 A;  4OJO A;  2VBM A;  3SQV A;  3WWG A;  4V02 C;  4YFO A;  4PMH A;  1XG2 A;  4YDT A;  5C1E A;  2X6W A;  1O8J A;  3EQO A;  4XN3 A;  4U49 A;  4XLC A;  5C1C A;  4Z06 A;  3UW0 A;  1NHC A;  1QA3 A;  3TH0 A;  4XOP A;  1PE9 A;  1L1I A;  2W7Z A;  1QCX A;  1K5C A;  2BM6 A;  3KRG A;  2X6Y A;  1RMG A;  3GQ9 A;  3SUC A;  2NZM A;  1IDK A;  2NTQ A;  4OJ6 A;  3VSU A;  2NST A;  3BH6 B;  1GQ8 A;  2VFQ A;  1OFE A;  1O88 A;  2BM5 A;  2VJJ A;  1OFM A;  1HG8 A;  2O17 A;  3LMW A;  1QJV A;  3SYJ A;  1LLW A;  4OJP A;  1HF2 A;  1O8M A;  1TYW A;  4JRA C;  2EWE A;  4YZQ A;  3AK5 A;  1H80 A;  1KQ5 A;  1O8D A;  1QRB A;  2NT9 A;  1O8L A;  2IQ7 A;  1TSP A;  2ODL A;  4U4B A;  1PLU A;  4Z03 A;  2BM7 A;  4URR A;  1IA5 A;  4OPW A;  4XMY A;  5DNS A;  2J8K A;  1EA0 A;  4YZ0 A;  3JUR A;  1O8E A;  2X85 A;  3JX8 A;  4OM9 A;  1KCD A;  3GQA A;  3VST A;  1WMR A;  4W8Q A;  2BM4 A;  4XQF A;  4XR6 A;  1EE6 A;  1CZF A;  2NTP A;  3B8Y A;  1IDJ A;  2VBK A;  1O8G A;  4XNF A;  2XT2 A;  2VBE A;  2XT4 A;  4MXN A;  2J8I A;  2O0V A;  4OJL A;  3ML3 A;  2B0R A;  2VFO A;  3H09 A;  3NB2 A;  2PYH A;  1LM1 A;  4XLA A;  4AVZ A;  1WXR A;  4XLE A;  2INV A;  3N90 A;  1QA2 A;  3PSS A;  3B90 A;  4W8S A;  1TYV A;  2O0W A;  2X6X A;  2PEC A;  2PYG A;  3EQN A;  4HWV A;  3ZSC A;  2QY1 A;  2XTX A;  2X3H A;  1DBG A;  3NAW A;  1RWR A;  3BH7 B;  3SY2 A;  3P4G A;  2VJI A;  1JRG A;  3B4N A;  2F3L A;  2V5I A;  2XC1 A;  4XN0 A;  2VFM A;  4YEJ A;  4XKW A;  1O8H A;  4I84 A;  1CLW A;  2UVE A;  3GQ8 A;  1QRC A;  3GQ7 A;  2XTY A;  1TYU A;  3RIQ A;  4YCQ A;  2NSP A;  2INU A;  2Z8G A;  1PXZ A;  1O8F A;  2BSP A;  3PSZ A;  3T9G A;  2NT6 A;  4YEL A;  4XOR A;  1IB4 A;  2QYU A;  4W8T A;  1OGM X;  3SZE A;  2XTW A;  4YC5 A;  3ZPP A;  4YZA A;  2BX6 A;  4XON A;  1JTA A;  1K4Z A;  1KTW A;  3LJY A;  3LYC A;  1RU4 A;  5AMV A;  3DU1 X;  1OOC A;  2O1D A;  4OJ5 A;  4XLH A;  3VMV A;  5JLV C;  5JMC B;  2G0Y A;  1X0C A;  1LLZ A;  1K8F A;  4W8R A;  2QXZ A;  1KCC A;  1QA1 A;  3VSV A;  2UVF A;  4OZZ A;  4YZX A;  1BN8 A;  4NK8 A;  4EW9 A;  1BHE A;  1O8I A;  1DBO A;  2NTB A;  2O04 A;  4XLF A;  4C2L A;  1EZG A;  3GRH A;  1VBL A;  1TYX A;  1OGO X;  4YEI A;  1OFL A;  2QX3 A; 
#chains in the Genus database with same CATH homology
 4OZY A;  4NK6 A;  3FY3 A;  3VMW A;  4XL9 A;  4XOT A;  1O8K A;  4Z05 A;  1AIR A;  4XM3 A;  4XKV A;  4MR0 A;  4OJO A;  2VBM A;  3WWG A;  4PMH A;  1XG2 A;  5C1E A;  2X6W A;  1O8J A;  3EQO A;  4XN3 A;  4U49 A;  4XLC A;  5C1C A;  4Z06 A;  3UW0 A;  1NHC A;  4XOP A;  1PE9 A;  1QCX A;  1K5C A;  3KRG A;  2X6Y A;  1RMG A;  3GQ9 A;  2NZM A;  1IDK A;  2NTQ A;  4OJ6 A;  3VSU A;  2NST A;  1GQ8 A;  1O88 A;  2VJJ A;  1OFM A;  1HG8 A;  2O17 A;  3LMW A;  1QJV A;  4OJP A;  4YZQ A;  1O8M A;  2EWE A;  1H80 A;  1O8D A;  2NT9 A;  2ODL A;  3SUC A;  1O8L A;  2IQ7 A;  1IA5 A;  4U4B A;  4Z03 A;  1PLU A;  4URR A;  4XMY A;  4YZ0 A;  3JUR A;  1O8E A;  2X85 A;  1KCD A;  3GQA A;  3VST A;  1WMR A;  4W8Q A;  4XQF A;  4XR6 A;  1EE6 A;  1CZF A;  2NTP A;  3B8Y A;  1IDJ A;  2VBK A;  1O8G A;  4XNF A;  2VBE A;  4MXN A;  2O0V A;  4OJL A;  2PYH A;  4AVZ A;  4XLA A;  4XLE A;  2INV A;  3B90 A;  4W8S A;  2O0W A;  2X6X A;  2PEC A;  2PYG A;  3EQN A;  4HWV A;  3ZSC A;  2QY1 A;  2X3H A;  1DBG A;  1RWR A;  4XN0 A;  2VJI A;  1JRG A;  3B4N A;  4YEJ A;  4XKW A;  1O8H A;  4I84 A;  2UVE A;  3GQ8 A;  3GQ7 A;  2NSP A;  2INU A;  2Z8G A;  1PXZ A;  1O8F A;  2BSP A;  3T9G A;  2NT6 A;  4YEL A;  4XOR A;  1IB4 A;  4W8T A;  1OGM X;  3ZPP A;  4YZA A;  4XON A;  1JTA A;  1KTW A;  1RU4 A;  5AMV A;  1OOC A;  2O1D A;  4OJ5 A;  4XLH A;  3VMV A;  1X0C A;  4W8R A;  2QXZ A;  1KCC A;  3VSV A;  2UVF A;  4OZZ A;  4YZX A;  1BN8 A;  4NK8 A;  4EW9 A;  1BHE A;  1O8I A;  1DBO A;  2NTB A;  2O04 A;  4XLF A;  4C2L A;  3GRH A;  1VBL A;  1OGO X;  1OFL A;  2QX3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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