2VBKA

Native tailspike protein of bacteriophage sf6
Total Genus 188
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
511
structure length
511
Chain Sequence
QFGPDLIEQLAQSGKYSQDNTKGDAMIGVKQPLPKAVLRTQHDKNKEAISILDFGVIDDGVTDNYQAIQNAIDAVASLPSGGELFIPASNQAVGYIVGSTLLIPGGVNIRGVGKASQLRAKSGLTGSVLRLSYDSDTIGRYLRNIRVTGNNTCNGIDTNITAEDSVIRQVYGWVFDNVMVNEVETAYLMQGLWHSKFIACQAGTCRVGLHFLGQCVSVSVSSCHFSRGNYSADESFGIRIQPQTYAWSSEAVRSEAIILDSETMCIGFKNAVYVHDCLDLHMEQLDLDYCGSTGVVIENVNGGFSFSNSWIAADADGTEQFTGIYFRTPTSTQSHKIVSGVHINTANKNTAANNQSIAIEQSAIFVFVSGCTLTGDEWAVNIVDINECVSFDKCIFNKPLRYLRSGGVSVTDCYLAGITEVQKPEGRYNTYRGCSGVPSVNGIINVPVAVGATSGSAAIPNPGNLTYRVRSLFGDPASSGDKVSVSGVTINVTRPSPVGVALPSMVEYLAI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
source organism Enterobacteria phage sf6
publication title An intersubunit active site between supercoiled parallel beta helices in the trimeric tailspike endorhamnosidase of Shigella flexneri Phage Sf6.
pubmed doi rcsb
molecule keywords TAILSPIKE-PROTEIN
total genus 188
structure length 511
sequence length 511
ec nomenclature
pdb deposition date 2007-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12708 Pectate_lyase_3 Pectate lyase superfamily protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2vbkA00
1BN8A 5C1CA 2VJIA 4OJ6A 4Z03A 4OJ5A 3VSUA 1KCDA 4XM3A 2NTBA 1O8LA 4XLEA 1O8EA 1DBGA 4XOPA 1DBOA 2IQ7A 4XLFA 4U49A 2QY1A 3VSVA 4XLAA 4C2LA 1AIRA 1WMRA 2X6XA 2X85A 4XKVA 2NZMA 2PYGA 4XLHA 3T9GA 1X0CA 2X3HA 4XORA 4XR6A 1HG8A 4URRA 4W8QA 4Z06A 4YZQA 2O04A 3B8YA 1RMGA 4XN3A 4NK6A 1KTWA 5AMVA 4XOTA 4U4BA 2NTPA 1CZFA 3EQNA 4OJOA 3GQAA 3ZPPA 1O8DA 4XLCA 4HWVA 2NT6A 1O8GA 1OGOX 1JRGA 4MXNA 4NK8A 2NSTA 3GQ9A 4OJPA 4XNFA 1O8IA 4XKWA 2O1DA 2QX3A 4W8TA 3JURA 1OFLA 1BHEA 1OOCA 2X6WA 1JTAA 2QXZA 3KRGA 1O8MA 1IDJA 4W8RA 4Z05A 3GQ8A 2O17A 1K5CA 2ODLA 2EWEA 2NSPA 2O0WA 3LMWA 4YZAA 3VMVA 1O8HA 3WWGA 1O88A 3GRHA 4W8SA 4AVZA 1IB4A 1PE9A 1VBLA 4XQFA 3VMWA 2NTQA 1QJVA 2NT9A 4OZZA 2PECA 4XMYA 2UVFA 1RWRA 2UVEA 2VJJA 2INUA 2VBEA 4XONA 1RU4A 3GQ7A 3VSTA 3SUCA 1XG2A 2BSPA 3B4NA 1PXZA 4OJLA 2O0VA 4YZXA 4MR0A 1O8KA 1IA5A 2VBMA 2X6YA 1QCXA 1O8FA 1OFMA 1GQ8A 2INVA 2Z8GA 2PYHA 4PMHA 1O8JA 4EW9A 4I84A 1H80A 3EQOA 4YEJA 4XN0A 1IDKA 3B90A 4OZYA 4XL9A 3ZSCA 1PLUA 3UW0A 1KCCA 4YZ0A 3FY3A 5C1EA 1EE6A 2VBKA 4YELA 1NHCA 1OGMX
chains in the Genus database with same CATH superfamily
1BN8A 5C1CA 2VJIA 3LJYA 4OJ6A 4Z03A 4OJ5A 1CLWA 2YUHA 3VSUA 2XT4A 1KCDA 2J8IA 2XT2A 4XM3A 2NTBA 1O8LA 4XLEA 1O8EA 1DBGA 4XOPA 1QA1A 2VFNA 1DBOA 2IQ7A 1QRBA 4XLFA 3LYCA 2V5IA 5JMCB 4U49A 2QY1A 3VSVA 4XLAA 4C2LA 1AIRA 2VFMA 1WMRA 3PSSA 2X6XA 2BM5A 4YCQA 2X85A 4XKVA 2NZMA 3RIQA 2PYGA 4JRAC 4XLHA 3SZEA 3BH6B 3DU1X 1X0CA 3T9GA 3AK5A 2X3HA 1QRCA 4XORA 1WXRA 4XR6A 1HG8A 4URRA 4W8QA 1QQ1A 4Z06A 3PSZA 1QA3A 1TYVA 2XTYA 4YZQA 2O04A 3B8YA 1RMGA 4XN3A 4NK6A 1KTWA 4V02C 5AMVA 4XOTA 2F3LA 4U4BA 1OFDA 2NTPA 1EZGA 1CZFA 2O6WA 3EQNA 1TSPA 4OJOA 3GQAA 3SY2A 3ZPPA 1O8DA 4XLCA 4HWVA 2NT6A 3H09A 1O8GA 1OGOX 1LLZA 1JRGA 3SQVA 4MXNA 4NK8A 2NSTA 3GQ9A 4OJPA 4XNFA 1O8IA 4OM9A 4XKWA 5DNSA 4YFOA 2BM6A 2O1DA 2QX3A 4W8TA 2BM7A 3JURA 1OFLA 1BHEA 4OPWA 1LLWA 3TH0A 1OFEA 2QZAA 1OOCA 2VFQA 2X6WA 3P4GA 1JTAA 2QXZA 3KRGA 1TYXA 1O8MA 1IDJA 1EA0A 4W8RA 4Z05A 3GQ8A 1L1IA 2O17A 1K5CA 3PETA 4KH3A 4YDTA 2ODLA 2EWEA 2NSPA 2O0WA 3LMWA 3N6ZA 4YZAA 3VMVA 1O8HA 3WWGA 1O88A 3BH7B 3GRHA 4W8SA 4AVZA 3JX8A 2XTWA 1PE9A 3N90A 1IB4A 1VBLA 4XQFA 2IOUG 3VMWA 2NTQA 1QJVA 2NT9A 2QYUA 3NAWA 2J8KA 4OZZA 2PECA 4XMYA 1TYUA 1RWRA 2UVEA 1LM1A 2UVFA 2VJJA 2G0YA 3NB2A 2VFPA 2INUA 2VBEA 4XONA 1RU4A 1DABA 3GQ7A 1K4ZA 3VSTA 3SUCA 1XG2A 1TYWA 2BSPA 3B4NA 1PXZA 2BX6A 2O0VA 4OJLA 4YZXA 4YEIA 4MR0A 2W7ZA 1O8KA 1IA5A 2VBMA 2X6YA 1QCXA 1O8FA 1OFMA 2XC1A 1GQ8A 2INVA 2Z8GA 2PYHA 4PMHA 1K8FA 1O8JA 4EW9A 4I84A 4YC5A 2XTXA 5JLVC 2VFOA 1H80A 3EQOA 4YEJA 4XN0A 1IDKA 3B90A 1QA2A 1KQ5A 4OZYA 4XL9A 3ZSCA 1PLUA 3UW0A 1KCCA 4YZ0A 1HF2A 3FY3A 5C1EA 2B0RA 2BM4A 1EE6A 2VBKA 4YELA 1NHCA 1OGMX 3ML3A 3SYJA
chains in the Genus database with same CATH topology
1BN8A 5C1CA 2VJIA 4OJ6A 4Z03A 4OJ5A 3VSUA 1KCDA 4XM3A 2NTBA 1O8LA 4XLEA 1O8EA 1DBGA 4XOPA 1DBOA 2IQ7A 4XLFA 4U49A 2QY1A 3VSVA 4XLAA 4C2LA 1AIRA 1WMRA 2X6XA 2X85A 4XKVA 2NZMA 2PYGA 4XLHA 3T9GA 1X0CA 2X3HA 4XORA 4XR6A 1HG8A 4URRA 4W8QA 4Z06A 4YZQA 2O04A 3B8YA 1RMGA 4XN3A 4NK6A 1KTWA 5AMVA 4XOTA 4U4BA 2NTPA 1CZFA 3EQNA 4OJOA 3GQAA 3ZPPA 1O8DA 4XLCA 4HWVA 2NT6A 1O8GA 1OGOX 1JRGA 4MXNA 4NK8A 2NSTA 3GQ9A 4OJPA 4XNFA 1O8IA 4XKWA 2O1DA 2QX3A 4W8TA 3JURA 1OFLA 1BHEA 1OOCA 2X6WA 1JTAA 2QXZA 3KRGA 1O8MA 1IDJA 4W8RA 4Z05A 3GQ8A 2O17A 1K5CA 2ODLA 2EWEA 2NSPA 2O0WA 3LMWA 4YZAA 3VMVA 1O8HA 3WWGA 1O88A 3GRHA 4W8SA 4AVZA 1IB4A 1PE9A 1VBLA 4XQFA 3VMWA 2NTQA 1QJVA 2NT9A 4OZZA 2PECA 4XMYA 2UVFA 1RWRA 2UVEA 2VJJA 2INUA 2VBEA 4XONA 1RU4A 3GQ7A 3VSTA 3SUCA 1XG2A 2BSPA 3B4NA 1PXZA 4OJLA 2O0VA 4YZXA 4MR0A 1O8KA 1IA5A 2VBMA 2X6YA 1QCXA 1O8FA 1OFMA 1GQ8A 2INVA 2Z8GA 2PYHA 4PMHA 1O8JA 4EW9A 4I84A 1H80A 3EQOA 4YEJA 4XN0A 1IDKA 3B90A 4OZYA 4XL9A 3ZSCA 1PLUA 3UW0A 1KCCA 4YZ0A 3FY3A 5C1EA 1EE6A 2VBKA 4YELA 1NHCA 1OGMX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BN8 A;  5C1C A;  2VJI A;  4OJ6 A;  4Z03 A;  4OJ5 A;  3VSU A;  1KCD A;  4XM3 A;  2NTB A;  1O8L A;  4XLE A;  1O8E A;  1DBG A;  4XOP A;  1DBO A;  2IQ7 A;  4XLF A;  4U49 A;  2QY1 A;  3VSV A;  4XLA A;  4C2L A;  1AIR A;  1WMR A;  2X6X A;  2X85 A;  4XKV A;  2NZM A;  2PYG A;  4XLH A;  3T9G A;  1X0C A;  2X3H A;  4XOR A;  4XR6 A;  1HG8 A;  4URR A;  4W8Q A;  4Z06 A;  4YZQ A;  2O04 A;  3B8Y A;  1RMG A;  4XN3 A;  4NK6 A;  1KTW A;  5AMV A;  4XOT A;  4U4B A;  2NTP A;  1CZF A;  3EQN A;  4OJO A;  3GQA A;  3ZPP A;  1O8D A;  4XLC A;  4HWV A;  2NT6 A;  1O8G A;  1OGO X;  1JRG A;  4MXN A;  4NK8 A;  2NST A;  3GQ9 A;  4OJP A;  4XNF A;  1O8I A;  4XKW A;  2O1D A;  2QX3 A;  4W8T A;  3JUR A;  1OFL A;  1BHE A;  1OOC A;  2X6W A;  1JTA A;  2QXZ A;  3KRG A;  1O8M A;  1IDJ A;  4W8R A;  4Z05 A;  3GQ8 A;  2O17 A;  1K5C A;  2ODL A;  2EWE A;  2NSP A;  2O0W A;  3LMW A;  4YZA A;  3VMV A;  1O8H A;  3WWG A;  1O88 A;  3GRH A;  4W8S A;  4AVZ A;  1IB4 A;  1PE9 A;  1VBL A;  4XQF A;  3VMW A;  2NTQ A;  1QJV A;  2NT9 A;  4OZZ A;  2PEC A;  4XMY A;  2UVF A;  1RWR A;  2UVE A;  2VJJ A;  2INU A;  2VBE A;  4XON A;  1RU4 A;  3GQ7 A;  3VST A;  3SUC A;  1XG2 A;  2BSP A;  3B4N A;  1PXZ A;  4OJL A;  2O0V A;  4YZX A;  4MR0 A;  1O8K A;  1IA5 A;  2VBM A;  2X6Y A;  1QCX A;  1O8F A;  1OFM A;  1GQ8 A;  2INV A;  2Z8G A;  2PYH A;  4PMH A;  1O8J A;  4EW9 A;  4I84 A;  1H80 A;  3EQO A;  4YEJ A;  4XN0 A;  1IDK A;  3B90 A;  4OZY A;  4XL9 A;  3ZSC A;  1PLU A;  3UW0 A;  1KCC A;  4YZ0 A;  3FY3 A;  5C1E A;  1EE6 A;  2VBK A;  4YEL A;  1NHC A;  1OGM X; 
#chains in the Genus database with same CATH topology
 1BN8 A;  5C1C A;  2VJI A;  3LJY A;  4OJ6 A;  4Z03 A;  4OJ5 A;  1CLW A;  2YUH A;  3VSU A;  2XT4 A;  1KCD A;  2J8I A;  2XT2 A;  4XM3 A;  2NTB A;  1O8L A;  4XLE A;  1O8E A;  1DBG A;  4XOP A;  1QA1 A;  2VFN A;  1DBO A;  2IQ7 A;  1QRB A;  4XLF A;  3LYC A;  2V5I A;  5JMC B;  4U49 A;  2QY1 A;  3VSV A;  4XLA A;  4C2L A;  1AIR A;  2VFM A;  1WMR A;  3PSS A;  2X6X A;  2BM5 A;  4YCQ A;  2X85 A;  4XKV A;  2NZM A;  3RIQ A;  2PYG A;  4JRA C;  4XLH A;  3SZE A;  3BH6 B;  3DU1 X;  1X0C A;  3T9G A;  3AK5 A;  2X3H A;  1QRC A;  4XOR A;  1WXR A;  4XR6 A;  1HG8 A;  4URR A;  4W8Q A;  1QQ1 A;  4Z06 A;  3PSZ A;  1QA3 A;  1TYV A;  2XTY A;  4YZQ A;  2O04 A;  3B8Y A;  1RMG A;  4XN3 A;  4NK6 A;  1KTW A;  4V02 C;  5AMV A;  4XOT A;  2F3L A;  4U4B A;  1OFD A;  2NTP A;  1EZG A;  1CZF A;  2O6W A;  3EQN A;  1TSP A;  4OJO A;  3GQA A;  3SY2 A;  3ZPP A;  1O8D A;  4XLC A;  4HWV A;  2NT6 A;  3H09 A;  1O8G A;  1OGO X;  1LLZ A;  1JRG A;  3SQV A;  4MXN A;  4NK8 A;  2NST A;  3GQ9 A;  4OJP A;  4XNF A;  1O8I A;  4OM9 A;  4XKW A;  5DNS A;  4YFO A;  2BM6 A;  2O1D A;  2QX3 A;  4W8T A;  2BM7 A;  3JUR A;  1OFL A;  1BHE A;  4OPW A;  1LLW A;  3TH0 A;  1OFE A;  2QZA A;  1OOC A;  2VFQ A;  2X6W A;  3P4G A;  1JTA A;  2QXZ A;  3KRG A;  1TYX A;  1O8M A;  1IDJ A;  1EA0 A;  4W8R A;  4Z05 A;  3GQ8 A;  1L1I A;  2O17 A;  1K5C A;  3PET A;  4KH3 A;  4YDT A;  2ODL A;  2EWE A;  2NSP A;  2O0W A;  3LMW A;  3N6Z A;  4YZA A;  3VMV A;  1O8H A;  3WWG A;  1O88 A;  3BH7 B;  3GRH A;  4W8S A;  4AVZ A;  3JX8 A;  2XTW A;  1PE9 A;  3N90 A;  1IB4 A;  1VBL A;  4XQF A;  2IOU G;  3VMW A;  2NTQ A;  1QJV A;  2NT9 A;  2QYU A;  3NAW A;  2J8K A;  4OZZ A;  2PEC A;  4XMY A;  1TYU A;  1RWR A;  2UVE A;  1LM1 A;  2UVF A;  2VJJ A;  2G0Y A;  3NB2 A;  2VFP A;  2INU A;  2VBE A;  4XON A;  1RU4 A;  1DAB A;  3GQ7 A;  1K4Z A;  3VST A;  3SUC A;  1XG2 A;  1TYW A;  2BSP A;  3B4N A;  1PXZ A;  2BX6 A;  2O0V A;  4OJL A;  4YZX A;  4YEI A;  4MR0 A;  2W7Z A;  1O8K A;  1IA5 A;  2VBM A;  2X6Y A;  1QCX A;  1O8F A;  1OFM A;  2XC1 A;  1GQ8 A;  2INV A;  2Z8G A;  2PYH A;  4PMH A;  1K8F A;  1O8J A;  4EW9 A;  4I84 A;  4YC5 A;  2XTX A;  5JLV C;  2VFO A;  1H80 A;  3EQO A;  4YEJ A;  4XN0 A;  1IDK A;  3B90 A;  1QA2 A;  1KQ5 A;  4OZY A;  4XL9 A;  3ZSC A;  1PLU A;  3UW0 A;  1KCC A;  4YZ0 A;  1HF2 A;  3FY3 A;  5C1E A;  2B0R A;  2BM4 A;  1EE6 A;  2VBK A;  4YEL A;  1NHC A;  1OGM X;  3ML3 A;  3SYJ A; 
#chains in the Genus database with same CATH homology
 1BN8 A;  5C1C A;  2VJI A;  4OJ6 A;  4Z03 A;  4OJ5 A;  3VSU A;  1KCD A;  4XM3 A;  2NTB A;  1O8L A;  4XLE A;  1O8E A;  1DBG A;  4XOP A;  1DBO A;  2IQ7 A;  4XLF A;  4U49 A;  2QY1 A;  3VSV A;  4XLA A;  4C2L A;  1AIR A;  1WMR A;  2X6X A;  2X85 A;  4XKV A;  2NZM A;  2PYG A;  4XLH A;  3T9G A;  1X0C A;  2X3H A;  4XOR A;  4XR6 A;  1HG8 A;  4URR A;  4W8Q A;  4Z06 A;  4YZQ A;  2O04 A;  3B8Y A;  1RMG A;  4XN3 A;  4NK6 A;  1KTW A;  5AMV A;  4XOT A;  4U4B A;  2NTP A;  1CZF A;  3EQN A;  4OJO A;  3GQA A;  3ZPP A;  1O8D A;  4XLC A;  4HWV A;  2NT6 A;  1O8G A;  1OGO X;  1JRG A;  4MXN A;  4NK8 A;  2NST A;  3GQ9 A;  4OJP A;  4XNF A;  1O8I A;  4XKW A;  2O1D A;  2QX3 A;  4W8T A;  3JUR A;  1OFL A;  1BHE A;  1OOC A;  2X6W A;  1JTA A;  2QXZ A;  3KRG A;  1O8M A;  1IDJ A;  4W8R A;  4Z05 A;  3GQ8 A;  2O17 A;  1K5C A;  2ODL A;  2EWE A;  2NSP A;  2O0W A;  3LMW A;  4YZA A;  3VMV A;  1O8H A;  3WWG A;  1O88 A;  3GRH A;  4W8S A;  4AVZ A;  1IB4 A;  1PE9 A;  1VBL A;  4XQF A;  3VMW A;  2NTQ A;  1QJV A;  2NT9 A;  4OZZ A;  2PEC A;  4XMY A;  2UVF A;  1RWR A;  2UVE A;  2VJJ A;  2INU A;  2VBE A;  4XON A;  1RU4 A;  3GQ7 A;  3VST A;  3SUC A;  1XG2 A;  2BSP A;  3B4N A;  1PXZ A;  4OJL A;  2O0V A;  4YZX A;  4MR0 A;  1O8K A;  1IA5 A;  2VBM A;  2X6Y A;  1QCX A;  1O8F A;  1OFM A;  1GQ8 A;  2INV A;  2Z8G A;  2PYH A;  4PMH A;  1O8J A;  4EW9 A;  4I84 A;  1H80 A;  3EQO A;  4YEJ A;  4XN0 A;  1IDK A;  3B90 A;  4OZY A;  4XL9 A;  3ZSC A;  1PLU A;  3UW0 A;  1KCC A;  4YZ0 A;  3FY3 A;  5C1E A;  1EE6 A;  2VBK A;  4YEL A;  1NHC A;  1OGM X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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