2BSPA

Bacillus subtilis pectate lyase r279k mutant
Total Genus 154
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
154
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQKAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
molecule keywords PROTEIN (PECTATE LYASE)
publication title The Conserved Arginine Proximal to the Essential Calcium of Bacillus Subtilis Pectate Lyase Stabilizes the Transition State
rcsb
source organism Bacillus subtilis
total genus 154
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 1998-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2bspA00
1OFMA 1O8EA 2NSTA 4XLEA 1KTWA 4XORA 4XOPA 1RU4A 4XKVA 1O8HA 2NTPA 2PYHA 1WMRA 2O04A 3KRGA 1QCXA 4MR0A 1JTAA 4XONA 2VJJA 4EW9A 3VSUA 1O8GA 3UW0A 5C1EA 1PLUA 1CZFA 3FY3A 4HWVA 1VBLA 2VBKA 2NT6A 4YELA 4XM3A 2QY1A 2IQ7A 3WWGA 4OJ6A 1RMGA 1IDJA 4OZYA 5AMVA 4AVZA 4MXNA 4OZZA 1PXZA 4Z06A 1NHCA 4OJPA 4XMYA 1DBGA 2NSPA 1O8LA 4W8QA 1OGOX 2X85A 4XN3A 4W8TA 4NK6A 4YZAA 3VMVA 2PYGA 2X6WA 4XLAA 1H80A 1O8DA 2NZMA 2O0WA 3B4NA 3SUCA 3JURA 1XG2A 1O8MA 2X6XA 4YZ0A 3ZSCA 2QXZA 4OJLA 3ZPPA 2O0VA 4PMHA 4W8SA 1BN8A 1DBOA 1OOCA 3GQAA 4Z05A 1O88A 3GQ7A 1O8FA 2VBEA 3LMWA 2PECA 4YZQA 2O1DA 1HG8A 3GQ8A 2VBMA 4URRA 4XLCA 1GQ8A 1IA5A 3GRHA 1O8JA 1BHEA 3GQ9A 4C2LA 2QX3A 4OJOA 1JRGA 3B8YA 3T9GA 4XR6A 4XNFA 3EQOA 1O8KA 4W8RA 2NT9A 2NTBA 4XKWA 4XL9A 2EWEA 4NK8A 3EQNA 1KCDA 2NTQA 2INVA 2INUA 3B90A 5C1CA 1RWRA 1K5CA 1IDKA 2O17A 1EE6A 4YEJA 1IB4A 1AIRA 1OFLA 2Z8GA 1PE9A 3VSVA 4XQFA 1KCCA 2ODLA 1OGMX 4XOTA 4U4BA 4I84A 4U49A 2UVFA 2UVEA 4YZXA 3VMWA 1X0CA 2BSPA 3VSTA 2X6YA 2VJIA 1O8IA 4Z03A 4OJ5A 1QJVA 4XN0A 2X3HA 4XLHA 4XLFA
chains in the Genus database with same CATH superfamily
4V02C 1OFMA 1O8EA 2NSTA 2V5IA 1KTWA 1OFDA 4XLEA 2YUHA 4XORA 2QYUA 2W7ZA 3JX8A 2IOUG 4XOPA 1RU4A 2XTYA 1O8HA 2BM4A 2NTPA 4XKVA 3SZEA 2PYHA 2XTXA 1WMRA 2O04A 3KRGA 4YDTA 1QCXA 4MR0A 1JTAA 4XONA 2VJJA 2F3LA 1DABA 5DNSA 3TH0A 4EW9A 1WXRA 2BX6A 3VSUA 1O8GA 2XT2A 3BH7B 3UW0A 1QA1A 5C1EA 1HF2A 1PLUA 1CZFA 1EA0A 3FY3A 3N90A 3H09A 4HWVA 1VBLA 2VBKA 2VFOA 1QRBA 2NT6A 3ML3A 4YELA 2XC1A 3LJYA 3LYCA 2VFQA 4XM3A 2QY1A 2IQ7A 3WWGA 4OJ6A 1QA3A 3DU1X 1RMGA 1IDJA 4KH3A 3PSSA 3P4GA 4OZYA 4YC5A 5AMVA 4MXNA 4AVZA 4YCQA 4OZZA 1PXZA 4Z06A 1NHCA 4OJPA 4XMYA 1QRCA 1OFEA 1DBGA 2NSPA 1O8LA 4W8QA 1OGOX 2X85A 4XN3A 4W8TA 1TYUA 4NK6A 1TYXA 4YZAA 3VMVA 2PYGA 1TSPA 2X6WA 4XLAA 1H80A 2BM6A 2VFMA 1O8DA 2NZMA 2O0WA 3B4NA 3SUCA 3JURA 1XG2A 3PETA 1LLZA 1O8MA 2X6XA 4JRAC 4YZ0A 3ZSCA 2QXZA 1L1IA 4YEIA 4OM9A 2VFPA 4OJLA 3ZPPA 2XT4A 2O0VA 4PMHA 4W8SA 1BN8A 1LLWA 3RIQA 1DBOA 1OOCA 3GQAA 1K8FA 3SY2A 4Z05A 1O88A 3GQ7A 1O8FA 2VBEA 3LMWA 2PECA 2J8KA 2O1DA 4YZQA 2O6WA 1HG8A 3GQ8A 2VBMA 2BM7A 4URRA 4XLCA 1GQ8A 2J8IA 1IA5A 3GRHA 1O8JA 1BHEA 3GQ9A 4C2LA 2QX3A 4OJOA 1JRGA 3B8YA 3T9GA 4XR6A 4XNFA 3EQOA 1O8KA 4OPWA 1LM1A 2NT9A 1TYWA 2NTBA 4W8RA 2EWEA 4NK8A 3EQNA 4XKWA 1KCDA 2NTQA 5JMCB 2INVA 3NB2A 2XTWA 2INUA 3B90A 5C1CA 1RWRA 3N6ZA 1K5CA 3AK5A 1IDKA 2G0YA 2O17A 1EE6A 4YEJA 5JLVC 1IB4A 1AIRA 1OFLA 2Z8GA 1PE9A 1TYVA 3VSVA 2QZAA 3PSZA 1QA2A 2BM5A 4XQFA 1EZGA 1KCCA 2ODLA 1OGMX 3NAWA 4XOTA 4U4BA 1KQ5A 4I84A 1CLWA 2UVFA 2UVEA 4U49A 4YZXA 3SYJA 1K4ZA 3BH6B 3SQVA 3VMWA 1X0CA 2BSPA 3VSTA 2X6YA 2B0RA 2VJIA 1O8IA 1QQ1A 4Z03A 2VFNA 4OJ5A 1QJVA 4XL9A 4XN0A 2X3HA 4XLHA 4XLFA 4YFOA
chains in the Genus database with same CATH topology
1OFMA 1O8EA 2NSTA 4XLEA 1KTWA 4XORA 4XOPA 1RU4A 4XKVA 1O8HA 2NTPA 2PYHA 1WMRA 2O04A 3KRGA 1QCXA 4MR0A 1JTAA 4XONA 2VJJA 4EW9A 3VSUA 1O8GA 3UW0A 5C1EA 1PLUA 1CZFA 3FY3A 4HWVA 1VBLA 2VBKA 2NT6A 4YELA 4XM3A 2QY1A 2IQ7A 3WWGA 4OJ6A 1RMGA 1IDJA 4OZYA 5AMVA 4AVZA 4MXNA 4OZZA 1PXZA 4Z06A 1NHCA 4OJPA 4XMYA 1DBGA 2NSPA 1O8LA 4W8QA 1OGOX 2X85A 4XN3A 4W8TA 4NK6A 4YZAA 3VMVA 2PYGA 2X6WA 4XLAA 1H80A 1O8DA 2NZMA 2O0WA 3B4NA 3SUCA 3JURA 1XG2A 1O8MA 2X6XA 4YZ0A 3ZSCA 2QXZA 4OJLA 3ZPPA 2O0VA 4PMHA 4W8SA 1BN8A 1DBOA 1OOCA 3GQAA 4Z05A 1O88A 3GQ7A 1O8FA 2VBEA 3LMWA 2PECA 4YZQA 2O1DA 1HG8A 3GQ8A 2VBMA 4URRA 4XLCA 1GQ8A 1IA5A 3GRHA 1O8JA 1BHEA 3GQ9A 4C2LA 2QX3A 4OJOA 1JRGA 3B8YA 3T9GA 4XR6A 4XNFA 3EQOA 1O8KA 4W8RA 2NT9A 2NTBA 4XKWA 4XL9A 2EWEA 4NK8A 3EQNA 1KCDA 2NTQA 2INVA 2INUA 3B90A 5C1CA 1RWRA 1K5CA 1IDKA 2O17A 1EE6A 4YEJA 1IB4A 1AIRA 1OFLA 2Z8GA 1PE9A 3VSVA 4XQFA 1KCCA 2ODLA 1OGMX 4XOTA 4U4BA 4I84A 4U49A 2UVFA 2UVEA 4YZXA 3VMWA 1X0CA 2BSPA 3VSTA 2X6YA 2VJIA 1O8IA 4Z03A 4OJ5A 1QJVA 4XN0A 2X3HA 4XLHA 4XLFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OFM A;  1O8E A;  2NST A;  4XLE A;  1KTW A;  4XOR A;  4XOP A;  1RU4 A;  4XKV A;  1O8H A;  2NTP A;  2PYH A;  1WMR A;  2O04 A;  3KRG A;  1QCX A;  4MR0 A;  1JTA A;  4XON A;  2VJJ A;  4EW9 A;  3VSU A;  1O8G A;  3UW0 A;  5C1E A;  1PLU A;  1CZF A;  3FY3 A;  4HWV A;  1VBL A;  2VBK A;  2NT6 A;  4YEL A;  4XM3 A;  2QY1 A;  2IQ7 A;  3WWG A;  4OJ6 A;  1RMG A;  1IDJ A;  4OZY A;  5AMV A;  4AVZ A;  4MXN A;  4OZZ A;  1PXZ A;  4Z06 A;  1NHC A;  4OJP A;  4XMY A;  1DBG A;  2NSP A;  1O8L A;  4W8Q A;  1OGO X;  2X85 A;  4XN3 A;  4W8T A;  4NK6 A;  4YZA A;  3VMV A;  2PYG A;  2X6W A;  4XLA A;  1H80 A;  1O8D A;  2NZM A;  2O0W A;  3B4N A;  3SUC A;  3JUR A;  1XG2 A;  1O8M A;  2X6X A;  4YZ0 A;  3ZSC A;  2QXZ A;  4OJL A;  3ZPP A;  2O0V A;  4PMH A;  4W8S A;  1BN8 A;  1DBO A;  1OOC A;  3GQA A;  4Z05 A;  1O88 A;  3GQ7 A;  1O8F A;  2VBE A;  3LMW A;  2PEC A;  4YZQ A;  2O1D A;  1HG8 A;  3GQ8 A;  2VBM A;  4URR A;  4XLC A;  1GQ8 A;  1IA5 A;  3GRH A;  1O8J A;  1BHE A;  3GQ9 A;  4C2L A;  2QX3 A;  4OJO A;  1JRG A;  3B8Y A;  3T9G A;  4XR6 A;  4XNF A;  3EQO A;  1O8K A;  4W8R A;  2NT9 A;  2NTB A;  4XKW A;  4XL9 A;  2EWE A;  4NK8 A;  3EQN A;  1KCD A;  2NTQ A;  2INV A;  2INU A;  3B90 A;  5C1C A;  1RWR A;  1K5C A;  1IDK A;  2O17 A;  1EE6 A;  4YEJ A;  1IB4 A;  1AIR A;  1OFL A;  2Z8G A;  1PE9 A;  3VSV A;  4XQF A;  1KCC A;  2ODL A;  1OGM X;  4XOT A;  4U4B A;  4I84 A;  4U49 A;  2UVF A;  2UVE A;  4YZX A;  3VMW A;  1X0C A;  2BSP A;  3VST A;  2X6Y A;  2VJI A;  1O8I A;  4Z03 A;  4OJ5 A;  1QJV A;  4XN0 A;  2X3H A;  4XLH A;  4XLF A; 
#chains in the Genus database with same CATH topology
 4V02 C;  1OFM A;  1O8E A;  2NST A;  2V5I A;  1KTW A;  1OFD A;  4XLE A;  2YUH A;  4XOR A;  2QYU A;  2W7Z A;  3JX8 A;  2IOU G;  4XOP A;  1RU4 A;  2XTY A;  1O8H A;  2BM4 A;  2NTP A;  4XKV A;  3SZE A;  2PYH A;  2XTX A;  1WMR A;  2O04 A;  3KRG A;  4YDT A;  1QCX A;  4MR0 A;  1JTA A;  4XON A;  2VJJ A;  2F3L A;  1DAB A;  5DNS A;  3TH0 A;  4EW9 A;  1WXR A;  2BX6 A;  3VSU A;  1O8G A;  2XT2 A;  3BH7 B;  3UW0 A;  1QA1 A;  5C1E A;  1HF2 A;  1PLU A;  1CZF A;  1EA0 A;  3FY3 A;  3N90 A;  3H09 A;  4HWV A;  1VBL A;  2VBK A;  2VFO A;  1QRB A;  2NT6 A;  3ML3 A;  4YEL A;  2XC1 A;  3LJY A;  3LYC A;  2VFQ A;  4XM3 A;  2QY1 A;  2IQ7 A;  3WWG A;  4OJ6 A;  1QA3 A;  3DU1 X;  1RMG A;  1IDJ A;  4KH3 A;  3PSS A;  3P4G A;  4OZY A;  4YC5 A;  5AMV A;  4MXN A;  4AVZ A;  4YCQ A;  4OZZ A;  1PXZ A;  4Z06 A;  1NHC A;  4OJP A;  4XMY A;  1QRC A;  1OFE A;  1DBG A;  2NSP A;  1O8L A;  4W8Q A;  1OGO X;  2X85 A;  4XN3 A;  4W8T A;  1TYU A;  4NK6 A;  1TYX A;  4YZA A;  3VMV A;  2PYG A;  1TSP A;  2X6W A;  4XLA A;  1H80 A;  2BM6 A;  2VFM A;  1O8D A;  2NZM A;  2O0W A;  3B4N A;  3SUC A;  3JUR A;  1XG2 A;  3PET A;  1LLZ A;  1O8M A;  2X6X A;  4JRA C;  4YZ0 A;  3ZSC A;  2QXZ A;  1L1I A;  4YEI A;  4OM9 A;  2VFP A;  4OJL A;  3ZPP A;  2XT4 A;  2O0V A;  4PMH A;  4W8S A;  1BN8 A;  1LLW A;  3RIQ A;  1DBO A;  1OOC A;  3GQA A;  1K8F A;  3SY2 A;  4Z05 A;  1O88 A;  3GQ7 A;  1O8F A;  2VBE A;  3LMW A;  2PEC A;  2J8K A;  2O1D A;  4YZQ A;  2O6W A;  1HG8 A;  3GQ8 A;  2VBM A;  2BM7 A;  4URR A;  4XLC A;  1GQ8 A;  2J8I A;  1IA5 A;  3GRH A;  1O8J A;  1BHE A;  3GQ9 A;  4C2L A;  2QX3 A;  4OJO A;  1JRG A;  3B8Y A;  3T9G A;  4XR6 A;  4XNF A;  3EQO A;  1O8K A;  4OPW A;  1LM1 A;  2NT9 A;  1TYW A;  2NTB A;  4W8R A;  2EWE A;  4NK8 A;  3EQN A;  4XKW A;  1KCD A;  2NTQ A;  5JMC B;  2INV A;  3NB2 A;  2XTW A;  2INU A;  3B90 A;  5C1C A;  1RWR A;  3N6Z A;  1K5C A;  3AK5 A;  1IDK A;  2G0Y A;  2O17 A;  1EE6 A;  4YEJ A;  5JLV C;  1IB4 A;  1AIR A;  1OFL A;  2Z8G A;  1PE9 A;  1TYV A;  3VSV A;  2QZA A;  3PSZ A;  1QA2 A;  2BM5 A;  4XQF A;  1EZG A;  1KCC A;  2ODL A;  1OGM X;  3NAW A;  4XOT A;  4U4B A;  1KQ5 A;  4I84 A;  1CLW A;  2UVF A;  2UVE A;  4U49 A;  4YZX A;  3SYJ A;  1K4Z A;  3BH6 B;  3SQV A;  3VMW A;  1X0C A;  2BSP A;  3VST A;  2X6Y A;  2B0R A;  2VJI A;  1O8I A;  1QQ1 A;  4Z03 A;  2VFN A;  4OJ5 A;  1QJV A;  4XL9 A;  4XN0 A;  2X3H A;  4XLH A;  4XLF A;  4YFO A; 
#chains in the Genus database with same CATH homology
 1OFM A;  1O8E A;  2NST A;  4XLE A;  1KTW A;  4XOR A;  4XOP A;  1RU4 A;  4XKV A;  1O8H A;  2NTP A;  2PYH A;  1WMR A;  2O04 A;  3KRG A;  1QCX A;  4MR0 A;  1JTA A;  4XON A;  2VJJ A;  4EW9 A;  3VSU A;  1O8G A;  3UW0 A;  5C1E A;  1PLU A;  1CZF A;  3FY3 A;  4HWV A;  1VBL A;  2VBK A;  2NT6 A;  4YEL A;  4XM3 A;  2QY1 A;  2IQ7 A;  3WWG A;  4OJ6 A;  1RMG A;  1IDJ A;  4OZY A;  5AMV A;  4AVZ A;  4MXN A;  4OZZ A;  1PXZ A;  4Z06 A;  1NHC A;  4OJP A;  4XMY A;  1DBG A;  2NSP A;  1O8L A;  4W8Q A;  1OGO X;  2X85 A;  4XN3 A;  4W8T A;  4NK6 A;  4YZA A;  3VMV A;  2PYG A;  2X6W A;  4XLA A;  1H80 A;  1O8D A;  2NZM A;  2O0W A;  3B4N A;  3SUC A;  3JUR A;  1XG2 A;  1O8M A;  2X6X A;  4YZ0 A;  3ZSC A;  2QXZ A;  4OJL A;  3ZPP A;  2O0V A;  4PMH A;  4W8S A;  1BN8 A;  1DBO A;  1OOC A;  3GQA A;  4Z05 A;  1O88 A;  3GQ7 A;  1O8F A;  2VBE A;  3LMW A;  2PEC A;  4YZQ A;  2O1D A;  1HG8 A;  3GQ8 A;  2VBM A;  4URR A;  4XLC A;  1GQ8 A;  1IA5 A;  3GRH A;  1O8J A;  1BHE A;  3GQ9 A;  4C2L A;  2QX3 A;  4OJO A;  1JRG A;  3B8Y A;  3T9G A;  4XR6 A;  4XNF A;  3EQO A;  1O8K A;  4W8R A;  2NT9 A;  2NTB A;  4XKW A;  4XL9 A;  2EWE A;  4NK8 A;  3EQN A;  1KCD A;  2NTQ A;  2INV A;  2INU A;  3B90 A;  5C1C A;  1RWR A;  1K5C A;  1IDK A;  2O17 A;  1EE6 A;  4YEJ A;  1IB4 A;  1AIR A;  1OFL A;  2Z8G A;  1PE9 A;  3VSV A;  4XQF A;  1KCC A;  2ODL A;  1OGM X;  4XOT A;  4U4B A;  4I84 A;  4U49 A;  2UVF A;  2UVE A;  4YZX A;  3VMW A;  1X0C A;  2BSP A;  3VST A;  2X6Y A;  2VJI A;  1O8I A;  4Z03 A;  4OJ5 A;  1QJV A;  4XN0 A;  2X3H A;  4XLH A;  4XLF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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