2BSPA

Bacillus subtilis pectate lyase r279k mutant
Total Genus 154
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
154
sequence length
399
structure length
399
Chain Sequence
b'ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQKAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords PROTEIN (PECTATE LYASE)
publication title The Conserved Arginine Proximal to the Essential Calcium of Bacillus Subtilis Pectate Lyase Stabilizes the Transition State
rcsb
source organism Bacillus subtilis
molecule tags Lyase
total genus 154
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 1998-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2bspA00
4YELA 1O8KA 4YEJA 1IA5A 3VMWA 1OGOX 4XLAA 3VSVA 1X0CA 4XN0A 4Z03A 3B90A 1DBGA 4HWVA 4XKVA 3GRHA 1OGMX 1H80A 2IQ7A 3VMVA 1PXZA 1NHCA 4OJLA 4OZYA 5AMVA 1O8EA 2O0VA 3ZSCA 1O8FA 4XLHA 4OJ5A 4URRA 3LMWA 2PYHA 3EQNA 1RU4A 4XOPA 3T9GA 2NTBA 3JURA 1O8HA 4PMHA 4YZXA 1O8MA 5C1EA 1KTWA 1DBOA 1O8LA 2ODLA 5C1CA 4I84A 1JTAA 4NK6A 4U49A 2UVFA 2QXZA 3VSUA 1KCCA 2PYGA 1O8DA 4XLEA 2X85A 2X6WA 1QCXA 3B8YA 2BSPA 3EQOA 1O88A 1OOCA 3GQ8A 2NZMA 1AIRA 1VBLA 4MXNA 3SUCA 2X6YA 3B4NA 4YZ0A 4MR0A 2O0WA 3GQ7A 4AVZA 4XQFA 4OZZA 2NT6A 1OFLA 2X6XA 4YZAA 4Z06A 4XL9A 2NT9A 4XMYA 1PE9A 1O8GA 1O8JA 4XN3A 3GQ9A 2PECA 1CZFA 1PLUA 1GQ8A 1O8IA 3KRGA 1IDJA 1IDKA 4Z05A 2VBKA 3UW0A 4EW9A 2VJJA 4W8TA 3ZPPA 1JRGA 1RMGA 3GQAA 1RWRA 4C2LA 2O17A 4W8SA 1KCDA 2Z8GA 4XLFA 4XKWA 4XLCA 3VSTA 2UVEA 2QY1A 4XONA 2QX3A 2NSPA 1K5CA 4OJ6A 1WMRA 2O1DA 2EWEA 4U4BA 4XORA 1XG2A 4YZQA 1OFMA 1QJVA 3FY3A 2NTQA 2VBEA 4W8QA 1IB4A 1BHEA 1EE6A 2INUA 1BN8A 3WWGA 4XR6A 2O04A 4NK8A 4XM3A 2VBMA 4OJPA 1HG8A 2NTPA 2X3HA 4XNFA 2INVA 4W8RA 4OJOA 4XOTA 2NSTA 2VJIA
chains in the Genus database with same CATH superfamily
1CLWA 1TYUA 4YELA 1O8KA 4YEJA 3SYJA 1IA5A 2F3LA 3VMWA 1OGOX 4V02C 4XLAA 3VSVA 1X0CA 4XN0A 4YFOA 4Z03A 3B90A 1DBGA 3TH0A 4HWVA 4XKVA 3GRHA 2J8IA 1OGMX 1H80A 2IQ7A 3VMVA 1OFDA 3P4GA 2VFPA 1KQ5A 1PXZA 1NHCA 4OJLA 4OZYA 5AMVA 1O8EA 2O0VA 3ZSCA 1O8FA 4XLHA 4OJ5A 4URRA 1LLWA 2QZAA 3LMWA 2PYHA 3EQNA 1RU4A 4XOPA 3T9GA 2NTBA 3BH6B 3JURA 1O8HA 4PMHA 1LM1A 4YZXA 1TSPA 3DU1X 1O8MA 5C1EA 1KTWA 3NAWA 3PSZA 1DBOA 2BM6A 1O8LA 2ODLA 5C1CA 4OM9A 4YCQA 4I84A 1JTAA 4NK6A 4U49A 2XTXA 2UVFA 2QXZA 1QA2A 3VSUA 4YDTA 2PYGA 1KCCA 2BX6A 1O8DA 2J8KA 4XLEA 2X85A 2X6WA 1QCXA 3B8YA 2BSPA 3EQOA 1O88A 1OOCA 3GQ8A 2NZMA 2YUHA 4YC5A 4YEIA 1AIRA 2BM4A 2BM7A 1VBLA 4MXNA 1QRBA 2VFNA 4KH3A 1QA3A 3SUCA 2X6YA 3NB2A 3B4NA 4YZ0A 4MR0A 2O0WA 2W7ZA 3GQ7A 4AVZA 4XQFA 4OZZA 2XTWA 2NT6A 3ML3A 1OFLA 2X6XA 4YZAA 2B0RA 2XTYA 4Z06A 4XL9A 2NT9A 4XMYA 1QA1A 1PE9A 1O8GA 1O8JA 1QRCA 4XN3A 1WXRA 3GQ9A 1TYVA 2PECA 1CZFA 1PLUA 1GQ8A 1O8IA 2VFMA 1IDJA 3KRGA 3PSSA 1IDKA 4Z05A 2VBKA 3UW0A 1DABA 4EW9A 2VJJA 4W8TA 5JLVC 3ZPPA 2XT4A 1JRGA 2XT2A 2QYUA 1RMGA 2V5IA 2IOUG 1RWRA 3BH7B 1QQ1A 3GQAA 2O17A 2O6WA 2XC1A 4W8SA 4C2LA 1KCDA 2Z8GA 4XLFA 4XKWA 4XLCA 3VSTA 2VFOA 2UVEA 1TYWA 2QY1A 1HF2A 2BM5A 4XONA 4OPWA 1TYXA 1EZGA 2QX3A 2NSPA 5DNSA 1K5CA 4OJ6A 1WMRA 2O1DA 2EWEA 3PETA 3SY2A 3LYCA 4U4BA 4XORA 3H09A 3JX8A 5JMCB 1XG2A 2VFQA 1L1IA 4YZQA 1OFMA 1QJVA 3FY3A 1OFEA 2NTQA 1K4ZA 2VBEA 4W8QA 1IB4A 2G0YA 1BHEA 4JRAC 1EE6A 2INUA 3N6ZA 3SQVA 1BN8A 3WWGA 3LJYA 4XR6A 1LLZA 2O04A 4NK8A 4XM3A 2VBMA 4OJPA 1HG8A 2NTPA 3RIQA 3N90A 3AK5A 2X3HA 1K8FA 4XNFA 2INVA 4W8RA 4OJOA 4XOTA 2NSTA 1EA0A 2VJIA 3SZEA
chains in the Genus database with same CATH topology
4YELA 1O8KA 4YEJA 1IA5A 3VMWA 1OGOX 4XLAA 3VSVA 1X0CA 4XN0A 4Z03A 3B90A 1DBGA 4HWVA 4XKVA 3GRHA 1OGMX 1H80A 2IQ7A 3VMVA 1PXZA 1NHCA 4OJLA 4OZYA 5AMVA 1O8EA 2O0VA 3ZSCA 1O8FA 4XLHA 4OJ5A 4URRA 3LMWA 2PYHA 3EQNA 1RU4A 4XOPA 3T9GA 2NTBA 3JURA 1O8HA 4PMHA 4YZXA 1O8MA 5C1EA 1KTWA 1DBOA 1O8LA 2ODLA 5C1CA 4I84A 1JTAA 4NK6A 4U49A 2UVFA 2QXZA 3VSUA 1KCCA 2PYGA 1O8DA 4XLEA 2X85A 2X6WA 1QCXA 3B8YA 2BSPA 3EQOA 1O88A 1OOCA 3GQ8A 2NZMA 1AIRA 1VBLA 4MXNA 3SUCA 2X6YA 3B4NA 4YZ0A 4MR0A 2O0WA 3GQ7A 4AVZA 4XQFA 4OZZA 2NT6A 1OFLA 2X6XA 4YZAA 4Z06A 4XL9A 2NT9A 4XMYA 1PE9A 1O8GA 1O8JA 4XN3A 3GQ9A 2PECA 1CZFA 1PLUA 1GQ8A 1O8IA 3KRGA 1IDJA 1IDKA 4Z05A 2VBKA 3UW0A 4EW9A 2VJJA 4W8TA 3ZPPA 1JRGA 1RMGA 3GQAA 1RWRA 4C2LA 2O17A 4W8SA 1KCDA 2Z8GA 4XLFA 4XKWA 4XLCA 3VSTA 2UVEA 2QY1A 4XONA 2QX3A 2NSPA 1K5CA 4OJ6A 1WMRA 2O1DA 2EWEA 4U4BA 4XORA 1XG2A 4YZQA 1OFMA 1QJVA 3FY3A 2NTQA 2VBEA 4W8QA 1IB4A 1BHEA 1EE6A 2INUA 1BN8A 3WWGA 4XR6A 2O04A 4NK8A 4XM3A 2VBMA 4OJPA 1HG8A 2NTPA 2X3HA 4XNFA 2INVA 4W8RA 4OJOA 4XOTA 2NSTA 2VJIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YEL A;  1O8K A;  4YEJ A;  1IA5 A;  3VMW A;  1OGO X;  4XLA A;  3VSV A;  1X0C A;  4XN0 A;  4Z03 A;  3B90 A;  1DBG A;  4HWV A;  4XKV A;  3GRH A;  1OGM X;  1H80 A;  2IQ7 A;  3VMV A;  1PXZ A;  1NHC A;  4OJL A;  4OZY A;  5AMV A;  1O8E A;  2O0V A;  3ZSC A;  1O8F A;  4XLH A;  4OJ5 A;  4URR A;  3LMW A;  2PYH A;  3EQN A;  1RU4 A;  4XOP A;  3T9G A;  2NTB A;  3JUR A;  1O8H A;  4PMH A;  4YZX A;  1O8M A;  5C1E A;  1KTW A;  1DBO A;  1O8L A;  2ODL A;  5C1C A;  4I84 A;  1JTA A;  4NK6 A;  4U49 A;  2UVF A;  2QXZ A;  3VSU A;  1KCC A;  2PYG A;  1O8D A;  4XLE A;  2X85 A;  2X6W A;  1QCX A;  3B8Y A;  2BSP A;  3EQO A;  1O88 A;  1OOC A;  3GQ8 A;  2NZM A;  1AIR A;  1VBL A;  4MXN A;  3SUC A;  2X6Y A;  3B4N A;  4YZ0 A;  4MR0 A;  2O0W A;  3GQ7 A;  4AVZ A;  4XQF A;  4OZZ A;  2NT6 A;  1OFL A;  2X6X A;  4YZA A;  4Z06 A;  4XL9 A;  2NT9 A;  4XMY A;  1PE9 A;  1O8G A;  1O8J A;  4XN3 A;  3GQ9 A;  2PEC A;  1CZF A;  1PLU A;  1GQ8 A;  1O8I A;  3KRG A;  1IDJ A;  1IDK A;  4Z05 A;  2VBK A;  3UW0 A;  4EW9 A;  2VJJ A;  4W8T A;  3ZPP A;  1JRG A;  1RMG A;  3GQA A;  1RWR A;  4C2L A;  2O17 A;  4W8S A;  1KCD A;  2Z8G A;  4XLF A;  4XKW A;  4XLC A;  3VST A;  2UVE A;  2QY1 A;  4XON A;  2QX3 A;  2NSP A;  1K5C A;  4OJ6 A;  1WMR A;  2O1D A;  2EWE A;  4U4B A;  4XOR A;  1XG2 A;  4YZQ A;  1OFM A;  1QJV A;  3FY3 A;  2NTQ A;  2VBE A;  4W8Q A;  1IB4 A;  1BHE A;  1EE6 A;  2INU A;  1BN8 A;  3WWG A;  4XR6 A;  2O04 A;  4NK8 A;  4XM3 A;  2VBM A;  4OJP A;  1HG8 A;  2NTP A;  2X3H A;  4XNF A;  2INV A;  4W8R A;  4OJO A;  4XOT A;  2NST A;  2VJI A; 
#chains in the Genus database with same CATH topology
 1CLW A;  1TYU A;  4YEL A;  1O8K A;  4YEJ A;  3SYJ A;  1IA5 A;  2F3L A;  3VMW A;  1OGO X;  4V02 C;  4XLA A;  3VSV A;  1X0C A;  4XN0 A;  4YFO A;  4Z03 A;  3B90 A;  1DBG A;  3TH0 A;  4HWV A;  4XKV A;  3GRH A;  2J8I A;  1OGM X;  1H80 A;  2IQ7 A;  3VMV A;  1OFD A;  3P4G A;  2VFP A;  1KQ5 A;  1PXZ A;  1NHC A;  4OJL A;  4OZY A;  5AMV A;  1O8E A;  2O0V A;  3ZSC A;  1O8F A;  4XLH A;  4OJ5 A;  4URR A;  1LLW A;  2QZA A;  3LMW A;  2PYH A;  3EQN A;  1RU4 A;  4XOP A;  3T9G A;  2NTB A;  3BH6 B;  3JUR A;  1O8H A;  4PMH A;  1LM1 A;  4YZX A;  1TSP A;  3DU1 X;  1O8M A;  5C1E A;  1KTW A;  3NAW A;  3PSZ A;  1DBO A;  2BM6 A;  1O8L A;  2ODL A;  5C1C A;  4OM9 A;  4YCQ A;  4I84 A;  1JTA A;  4NK6 A;  4U49 A;  2XTX A;  2UVF A;  2QXZ A;  1QA2 A;  3VSU A;  4YDT A;  2PYG A;  1KCC A;  2BX6 A;  1O8D A;  2J8K A;  4XLE A;  2X85 A;  2X6W A;  1QCX A;  3B8Y A;  2BSP A;  3EQO A;  1O88 A;  1OOC A;  3GQ8 A;  2NZM A;  2YUH A;  4YC5 A;  4YEI A;  1AIR A;  2BM4 A;  2BM7 A;  1VBL A;  4MXN A;  1QRB A;  2VFN A;  4KH3 A;  1QA3 A;  3SUC A;  2X6Y A;  3NB2 A;  3B4N A;  4YZ0 A;  4MR0 A;  2O0W A;  2W7Z A;  3GQ7 A;  4AVZ A;  4XQF A;  4OZZ A;  2XTW A;  2NT6 A;  3ML3 A;  1OFL A;  2X6X A;  4YZA A;  2B0R A;  2XTY A;  4Z06 A;  4XL9 A;  2NT9 A;  4XMY A;  1QA1 A;  1PE9 A;  1O8G A;  1O8J A;  1QRC A;  4XN3 A;  1WXR A;  3GQ9 A;  1TYV A;  2PEC A;  1CZF A;  1PLU A;  1GQ8 A;  1O8I A;  2VFM A;  1IDJ A;  3KRG A;  3PSS A;  1IDK A;  4Z05 A;  2VBK A;  3UW0 A;  1DAB A;  4EW9 A;  2VJJ A;  4W8T A;  5JLV C;  3ZPP A;  2XT4 A;  1JRG A;  2XT2 A;  2QYU A;  1RMG A;  2V5I A;  2IOU G;  1RWR A;  3BH7 B;  1QQ1 A;  3GQA A;  2O17 A;  2O6W A;  2XC1 A;  4W8S A;  4C2L A;  1KCD A;  2Z8G A;  4XLF A;  4XKW A;  4XLC A;  3VST A;  2VFO A;  2UVE A;  1TYW A;  2QY1 A;  1HF2 A;  2BM5 A;  4XON A;  4OPW A;  1TYX A;  1EZG A;  2QX3 A;  2NSP A;  5DNS A;  1K5C A;  4OJ6 A;  1WMR A;  2O1D A;  2EWE A;  3PET A;  3SY2 A;  3LYC A;  4U4B A;  4XOR A;  3H09 A;  3JX8 A;  5JMC B;  1XG2 A;  2VFQ A;  1L1I A;  4YZQ A;  1OFM A;  1QJV A;  3FY3 A;  1OFE A;  2NTQ A;  1K4Z A;  2VBE A;  4W8Q A;  1IB4 A;  2G0Y A;  1BHE A;  4JRA C;  1EE6 A;  2INU A;  3N6Z A;  3SQV A;  1BN8 A;  3WWG A;  3LJY A;  4XR6 A;  1LLZ A;  2O04 A;  4NK8 A;  4XM3 A;  2VBM A;  4OJP A;  1HG8 A;  2NTP A;  3RIQ A;  3N90 A;  3AK5 A;  2X3H A;  1K8F A;  4XNF A;  2INV A;  4W8R A;  4OJO A;  4XOT A;  2NST A;  1EA0 A;  2VJI A;  3SZE A; 
#chains in the Genus database with same CATH homology
 4YEL A;  1O8K A;  4YEJ A;  1IA5 A;  3VMW A;  1OGO X;  4XLA A;  3VSV A;  1X0C A;  4XN0 A;  4Z03 A;  3B90 A;  1DBG A;  4HWV A;  4XKV A;  3GRH A;  1OGM X;  1H80 A;  2IQ7 A;  3VMV A;  1PXZ A;  1NHC A;  4OJL A;  4OZY A;  5AMV A;  1O8E A;  2O0V A;  3ZSC A;  1O8F A;  4XLH A;  4OJ5 A;  4URR A;  3LMW A;  2PYH A;  3EQN A;  1RU4 A;  4XOP A;  3T9G A;  2NTB A;  3JUR A;  1O8H A;  4PMH A;  4YZX A;  1O8M A;  5C1E A;  1KTW A;  1DBO A;  1O8L A;  2ODL A;  5C1C A;  4I84 A;  1JTA A;  4NK6 A;  4U49 A;  2UVF A;  2QXZ A;  3VSU A;  1KCC A;  2PYG A;  1O8D A;  4XLE A;  2X85 A;  2X6W A;  1QCX A;  3B8Y A;  2BSP A;  3EQO A;  1O88 A;  1OOC A;  3GQ8 A;  2NZM A;  1AIR A;  1VBL A;  4MXN A;  3SUC A;  2X6Y A;  3B4N A;  4YZ0 A;  4MR0 A;  2O0W A;  3GQ7 A;  4AVZ A;  4XQF A;  4OZZ A;  2NT6 A;  1OFL A;  2X6X A;  4YZA A;  4Z06 A;  4XL9 A;  2NT9 A;  4XMY A;  1PE9 A;  1O8G A;  1O8J A;  4XN3 A;  3GQ9 A;  2PEC A;  1CZF A;  1PLU A;  1GQ8 A;  1O8I A;  3KRG A;  1IDJ A;  1IDK A;  4Z05 A;  2VBK A;  3UW0 A;  4EW9 A;  2VJJ A;  4W8T A;  3ZPP A;  1JRG A;  1RMG A;  3GQA A;  1RWR A;  4C2L A;  2O17 A;  4W8S A;  1KCD A;  2Z8G A;  4XLF A;  4XKW A;  4XLC A;  3VST A;  2UVE A;  2QY1 A;  4XON A;  2QX3 A;  2NSP A;  1K5C A;  4OJ6 A;  1WMR A;  2O1D A;  2EWE A;  4U4B A;  4XOR A;  1XG2 A;  4YZQ A;  1OFM A;  1QJV A;  3FY3 A;  2NTQ A;  2VBE A;  4W8Q A;  1IB4 A;  1BHE A;  1EE6 A;  2INU A;  1BN8 A;  3WWG A;  4XR6 A;  2O04 A;  4NK8 A;  4XM3 A;  2VBM A;  4OJP A;  1HG8 A;  2NTP A;  2X3H A;  4XNF A;  2INV A;  4W8R A;  4OJO A;  4XOT A;  2NST A;  2VJI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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