2BSPA

Bacillus subtilis pectate lyase r279k mutant
Total Genus 154
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
154
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQKAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The Conserved Arginine Proximal to the Essential Calcium of Bacillus Subtilis Pectate Lyase Stabilizes the Transition State
rcsb
source organism Bacillus subtilis
molecule tags Lyase
molecule keywords PROTEIN (PECTATE LYASE)
total genus 154
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 1998-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2bspA00
4XLCA 2VJIA 4XONA 1HG8A 4EW9A 2VBKA 4YZAA 1KCDA 1VBLA 3VSTA 1KCCA 4URRA 1DBOA 1AIRA 2EWEA 1EE6A 3GQ9A 1NHCA 2PECA 4XORA 4XQFA 2NSTA 4XR6A 4U4BA 2X3HA 3B90A 4MR0A 1O8FA 2IQ7A 3EQNA 4XLAA 4PMHA 1O8KA 4XLEA 2O17A 4OJ5A 2NTQA 1RMGA 1OFLA 1GQ8A 5AMVA 2O0WA 2O04A 1O8EA 1JRGA 1XG2A 4XN0A 1QJVA 4OJPA 1KTWA 1OFMA 4HWVA 1BN8A 1OOCA 1PE9A 4NK8A 3GRHA 4XLHA 4C2LA 1OGMX 1K5CA 1IA5A 1RU4A 1O8LA 1PXZA 3B4NA 4XOTA 2UVEA 1O8IA 4Z05A 3VMVA 1IB4A 2QX3A 4W8RA 4XMYA 4YZ0A 4XKWA 3KRGA 1QCXA 4Z03A 1RWRA 4AVZA 1H80A 1O8HA 3FY3A 1JTAA 2NTPA 2PYHA 4Z06A 1BHEA 3VSUA 4YELA 3LMWA 3EQOA 4XNFA 2X6YA 2QY1A 1O8DA 3ZSCA 2INVA 4OJ6A 2NZMA 1IDJA 2X85A 2X6WA 2Z8GA 4OJOA 1O8JA 4XL9A 3VSVA 3T9GA 1CZFA 4W8SA 1WMRA 4NK6A 3GQAA 2UVFA 4YZXA 4OJLA 4XM3A 1IDKA 3JURA 4XN3A 4XOPA 4MXNA 3ZPPA 2VJJA 1OGOX 3B8YA 1O8MA 2QXZA 2NT9A 2VBEA 2NSPA 4XLFA 4XKVA 2BSPA 3WWGA 1X0CA 2VBMA 5C1EA 2X6XA 4W8QA 4W8TA 4OZZA 1O88A 2O1DA 2NT6A 1O8GA 3UW0A 2NTBA 2ODLA 3GQ8A 2INUA 2PYGA 4OZYA 4YZQA 4I84A 3GQ7A 5C1CA 4U49A 1PLUA 3VMWA 2O0VA 1DBGA 3SUCA 4YEJA
chains in the Genus database with same CATH superfamily
2VFQA 4XLCA 2VJIA 1LLZA 1HG8A 2VFOA 4XONA 4EW9A 2VBKA 4YZAA 1OFEA 1QA1A 2XT2A 1KCDA 1QQ1A 1VBLA 3VSTA 1KCCA 3RIQA 4URRA 1DBOA 1AIRA 2EWEA 3LYCA 3NAWA 5DNSA 1EE6A 3GQ9A 1NHCA 2PECA 4XORA 4XQFA 2V5IA 2NSTA 4XR6A 4U4BA 2X3HA 3B90A 4MR0A 1O8FA 2IQ7A 3EQNA 3NB2A 4XLAA 4PMHA 3AK5A 1O8KA 2BM7A 2BM5A 4XLEA 2O17A 3PSSA 4OJ5A 2YUHA 2NTQA 1RMGA 3ML3A 3TH0A 1OFLA 1GQ8A 2IOUG 1EZGA 4OPWA 2O6WA 4JRAC 5AMVA 2O0WA 2O04A 1O8EA 1JRGA 1HF2A 1XG2A 4XN0A 1QJVA 4OJPA 1KTWA 1OFMA 4HWVA 4YC5A 4YCQA 1BN8A 1OOCA 1PE9A 4NK8A 2F3LA 1TYVA 3GRHA 2VFMA 4XLHA 1OGMX 4C2LA 5JMCB 1IA5A 1RU4A 1O8LA 2BM4A 1K5CA 1PXZA 3B4NA 4XOTA 4YDTA 2UVEA 1O8IA 4Z05A 3VMVA 1IB4A 4YFOA 2QX3A 4W8RA 4XMYA 4YZ0A 4XKWA 3KRGA 3SZEA 3P4GA 1QCXA 2XC1A 1KQ5A 4Z03A 1RWRA 1QRBA 4AVZA 2BX6A 1H80A 1O8HA 3FY3A 1JTAA 2NTPA 2PYHA 4Z06A 1BHEA 4V02C 4YEIA 3VSUA 4YELA 3LMWA 3SY2A 3EQOA 1EA0A 2B0RA 2QYUA 1TYXA 2X6YA 3LJYA 3PETA 4XNFA 2QY1A 3N6ZA 1O8DA 3ZSCA 2INVA 2QZAA 4OJ6A 3JX8A 2NZMA 5JLVC 1IDJA 2XTWA 2X85A 1QA2A 1LM1A 1K4ZA 2X6WA 2Z8GA 4OJOA 1O8JA 4XL9A 3VSVA 1TYUA 2G0YA 3BH7B 3T9GA 2XTYA 1CZFA 1QRCA 4W8SA 1LLWA 3N90A 1WMRA 4NK6A 3GQAA 2UVFA 3PSZA 1TSPA 4YZXA 4OJLA 4XM3A 1IDKA 2BM6A 3DU1X 3JURA 4XN3A 4OM9A 4XOPA 3BH6B 4MXNA 3SYJA 1CLWA 3ZPPA 1OFDA 2VJJA 1OGOX 3B8YA 1O8MA 2QXZA 2NT9A 2VBEA 1K8FA 2NSPA 2J8KA 4XLFA 4XKVA 2BSPA 3H09A 2XT4A 2VFNA 3WWGA 1X0CA 2VBMA 5C1EA 2X6XA 4W8QA 4W8TA 1TYWA 2VFPA 2W7ZA 1O88A 2J8IA 2NT6A 2O1DA 4OZZA 1WXRA 1O8GA 3UW0A 2NTBA 2ODLA 3GQ8A 2INUA 2PYGA 4OZYA 4KH3A 4YZQA 4I84A 3GQ7A 5C1CA 2XTXA 4U49A 1PLUA 3SQVA 1DABA 1L1IA 3VMWA 2O0VA 1DBGA 1QA3A 3SUCA 4YEJA
chains in the Genus database with same CATH topology
4XLCA 2VJIA 4XONA 1HG8A 4EW9A 2VBKA 4YZAA 1KCDA 1VBLA 3VSTA 1KCCA 4URRA 1DBOA 1AIRA 2EWEA 1EE6A 3GQ9A 1NHCA 2PECA 4XORA 4XQFA 2NSTA 4XR6A 4U4BA 2X3HA 3B90A 4MR0A 1O8FA 2IQ7A 3EQNA 4XLAA 4PMHA 1O8KA 4XLEA 2O17A 4OJ5A 2NTQA 1RMGA 1OFLA 1GQ8A 5AMVA 2O0WA 2O04A 1O8EA 1JRGA 1XG2A 4XN0A 1QJVA 4OJPA 1KTWA 1OFMA 4HWVA 1BN8A 1OOCA 1PE9A 4NK8A 3GRHA 4XLHA 4C2LA 1OGMX 1K5CA 1IA5A 1RU4A 1O8LA 1PXZA 3B4NA 4XOTA 2UVEA 1O8IA 4Z05A 3VMVA 1IB4A 2QX3A 4W8RA 4XMYA 4YZ0A 4XKWA 3KRGA 1QCXA 4Z03A 1RWRA 4AVZA 1H80A 1O8HA 3FY3A 1JTAA 2NTPA 2PYHA 4Z06A 1BHEA 3VSUA 4YELA 3LMWA 3EQOA 4XNFA 2X6YA 2QY1A 1O8DA 3ZSCA 2INVA 4OJ6A 2NZMA 1IDJA 2X85A 2X6WA 2Z8GA 4OJOA 1O8JA 4XL9A 3VSVA 3T9GA 1CZFA 4W8SA 1WMRA 4NK6A 3GQAA 2UVFA 4YZXA 4OJLA 4XM3A 1IDKA 3JURA 4XN3A 4XOPA 4MXNA 3ZPPA 2VJJA 1OGOX 3B8YA 1O8MA 2QXZA 2NT9A 2VBEA 2NSPA 4XLFA 4XKVA 2BSPA 3WWGA 1X0CA 2VBMA 5C1EA 2X6XA 4W8QA 4W8TA 4OZZA 1O88A 2O1DA 2NT6A 1O8GA 3UW0A 2NTBA 2ODLA 3GQ8A 2INUA 2PYGA 4OZYA 4YZQA 4I84A 3GQ7A 5C1CA 4U49A 1PLUA 3VMWA 2O0VA 1DBGA 3SUCA 4YEJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XLC A;  2VJI A;  4XON A;  1HG8 A;  4EW9 A;  2VBK A;  4YZA A;  1KCD A;  1VBL A;  3VST A;  1KCC A;  4URR A;  1DBO A;  1AIR A;  2EWE A;  1EE6 A;  3GQ9 A;  1NHC A;  2PEC A;  4XOR A;  4XQF A;  2NST A;  4XR6 A;  4U4B A;  2X3H A;  3B90 A;  4MR0 A;  1O8F A;  2IQ7 A;  3EQN A;  4XLA A;  4PMH A;  1O8K A;  4XLE A;  2O17 A;  4OJ5 A;  2NTQ A;  1RMG A;  1OFL A;  1GQ8 A;  5AMV A;  2O0W A;  2O04 A;  1O8E A;  1JRG A;  1XG2 A;  4XN0 A;  1QJV A;  4OJP A;  1KTW A;  1OFM A;  4HWV A;  1BN8 A;  1OOC A;  1PE9 A;  4NK8 A;  3GRH A;  4XLH A;  4C2L A;  1OGM X;  1K5C A;  1IA5 A;  1RU4 A;  1O8L A;  1PXZ A;  3B4N A;  4XOT A;  2UVE A;  1O8I A;  4Z05 A;  3VMV A;  1IB4 A;  2QX3 A;  4W8R A;  4XMY A;  4YZ0 A;  4XKW A;  3KRG A;  1QCX A;  4Z03 A;  1RWR A;  4AVZ A;  1H80 A;  1O8H A;  3FY3 A;  1JTA A;  2NTP A;  2PYH A;  4Z06 A;  1BHE A;  3VSU A;  4YEL A;  3LMW A;  3EQO A;  4XNF A;  2X6Y A;  2QY1 A;  1O8D A;  3ZSC A;  2INV A;  4OJ6 A;  2NZM A;  1IDJ A;  2X85 A;  2X6W A;  2Z8G A;  4OJO A;  1O8J A;  4XL9 A;  3VSV A;  3T9G A;  1CZF A;  4W8S A;  1WMR A;  4NK6 A;  3GQA A;  2UVF A;  4YZX A;  4OJL A;  4XM3 A;  1IDK A;  3JUR A;  4XN3 A;  4XOP A;  4MXN A;  3ZPP A;  2VJJ A;  1OGO X;  3B8Y A;  1O8M A;  2QXZ A;  2NT9 A;  2VBE A;  2NSP A;  4XLF A;  4XKV A;  2BSP A;  3WWG A;  1X0C A;  2VBM A;  5C1E A;  2X6X A;  4W8Q A;  4W8T A;  4OZZ A;  1O88 A;  2O1D A;  2NT6 A;  1O8G A;  3UW0 A;  2NTB A;  2ODL A;  3GQ8 A;  2INU A;  2PYG A;  4OZY A;  4YZQ A;  4I84 A;  3GQ7 A;  5C1C A;  4U49 A;  1PLU A;  3VMW A;  2O0V A;  1DBG A;  3SUC A;  4YEJ A; 
#chains in the Genus database with same CATH topology
 2VFQ A;  4XLC A;  2VJI A;  1LLZ A;  1HG8 A;  2VFO A;  4XON A;  4EW9 A;  2VBK A;  4YZA A;  1OFE A;  1QA1 A;  2XT2 A;  1KCD A;  1QQ1 A;  1VBL A;  3VST A;  1KCC A;  3RIQ A;  4URR A;  1DBO A;  1AIR A;  2EWE A;  3LYC A;  3NAW A;  5DNS A;  1EE6 A;  3GQ9 A;  1NHC A;  2PEC A;  4XOR A;  4XQF A;  2V5I A;  2NST A;  4XR6 A;  4U4B A;  2X3H A;  3B90 A;  4MR0 A;  1O8F A;  2IQ7 A;  3EQN A;  3NB2 A;  4XLA A;  4PMH A;  3AK5 A;  1O8K A;  2BM7 A;  2BM5 A;  4XLE A;  2O17 A;  3PSS A;  4OJ5 A;  2YUH A;  2NTQ A;  1RMG A;  3ML3 A;  3TH0 A;  1OFL A;  1GQ8 A;  2IOU G;  1EZG A;  4OPW A;  2O6W A;  4JRA C;  5AMV A;  2O0W A;  2O04 A;  1O8E A;  1JRG A;  1HF2 A;  1XG2 A;  4XN0 A;  1QJV A;  4OJP A;  1KTW A;  1OFM A;  4HWV A;  4YC5 A;  4YCQ A;  1BN8 A;  1OOC A;  1PE9 A;  4NK8 A;  2F3L A;  1TYV A;  3GRH A;  2VFM A;  4XLH A;  1OGM X;  4C2L A;  5JMC B;  1IA5 A;  1RU4 A;  1O8L A;  2BM4 A;  1K5C A;  1PXZ A;  3B4N A;  4XOT A;  4YDT A;  2UVE A;  1O8I A;  4Z05 A;  3VMV A;  1IB4 A;  4YFO A;  2QX3 A;  4W8R A;  4XMY A;  4YZ0 A;  4XKW A;  3KRG A;  3SZE A;  3P4G A;  1QCX A;  2XC1 A;  1KQ5 A;  4Z03 A;  1RWR A;  1QRB A;  4AVZ A;  2BX6 A;  1H80 A;  1O8H A;  3FY3 A;  1JTA A;  2NTP A;  2PYH A;  4Z06 A;  1BHE A;  4V02 C;  4YEI A;  3VSU A;  4YEL A;  3LMW A;  3SY2 A;  3EQO A;  1EA0 A;  2B0R A;  2QYU A;  1TYX A;  2X6Y A;  3LJY A;  3PET A;  4XNF A;  2QY1 A;  3N6Z A;  1O8D A;  3ZSC A;  2INV A;  2QZA A;  4OJ6 A;  3JX8 A;  2NZM A;  5JLV C;  1IDJ A;  2XTW A;  2X85 A;  1QA2 A;  1LM1 A;  1K4Z A;  2X6W A;  2Z8G A;  4OJO A;  1O8J A;  4XL9 A;  3VSV A;  1TYU A;  2G0Y A;  3BH7 B;  3T9G A;  2XTY A;  1CZF A;  1QRC A;  4W8S A;  1LLW A;  3N90 A;  1WMR A;  4NK6 A;  3GQA A;  2UVF A;  3PSZ A;  1TSP A;  4YZX A;  4OJL A;  4XM3 A;  1IDK A;  2BM6 A;  3DU1 X;  3JUR A;  4XN3 A;  4OM9 A;  4XOP A;  3BH6 B;  4MXN A;  3SYJ A;  1CLW A;  3ZPP A;  1OFD A;  2VJJ A;  1OGO X;  3B8Y A;  1O8M A;  2QXZ A;  2NT9 A;  2VBE A;  1K8F A;  2NSP A;  2J8K A;  4XLF A;  4XKV A;  2BSP A;  3H09 A;  2XT4 A;  2VFN A;  3WWG A;  1X0C A;  2VBM A;  5C1E A;  2X6X A;  4W8Q A;  4W8T A;  1TYW A;  2VFP A;  2W7Z A;  1O88 A;  2J8I A;  2NT6 A;  2O1D A;  4OZZ A;  1WXR A;  1O8G A;  3UW0 A;  2NTB A;  2ODL A;  3GQ8 A;  2INU A;  2PYG A;  4OZY A;  4KH3 A;  4YZQ A;  4I84 A;  3GQ7 A;  5C1C A;  2XTX A;  4U49 A;  1PLU A;  3SQV A;  1DAB A;  1L1I A;  3VMW A;  2O0V A;  1DBG A;  1QA3 A;  3SUC A;  4YEJ A; 
#chains in the Genus database with same CATH homology
 4XLC A;  2VJI A;  4XON A;  1HG8 A;  4EW9 A;  2VBK A;  4YZA A;  1KCD A;  1VBL A;  3VST A;  1KCC A;  4URR A;  1DBO A;  1AIR A;  2EWE A;  1EE6 A;  3GQ9 A;  1NHC A;  2PEC A;  4XOR A;  4XQF A;  2NST A;  4XR6 A;  4U4B A;  2X3H A;  3B90 A;  4MR0 A;  1O8F A;  2IQ7 A;  3EQN A;  4XLA A;  4PMH A;  1O8K A;  4XLE A;  2O17 A;  4OJ5 A;  2NTQ A;  1RMG A;  1OFL A;  1GQ8 A;  5AMV A;  2O0W A;  2O04 A;  1O8E A;  1JRG A;  1XG2 A;  4XN0 A;  1QJV A;  4OJP A;  1KTW A;  1OFM A;  4HWV A;  1BN8 A;  1OOC A;  1PE9 A;  4NK8 A;  3GRH A;  4XLH A;  4C2L A;  1OGM X;  1K5C A;  1IA5 A;  1RU4 A;  1O8L A;  1PXZ A;  3B4N A;  4XOT A;  2UVE A;  1O8I A;  4Z05 A;  3VMV A;  1IB4 A;  2QX3 A;  4W8R A;  4XMY A;  4YZ0 A;  4XKW A;  3KRG A;  1QCX A;  4Z03 A;  1RWR A;  4AVZ A;  1H80 A;  1O8H A;  3FY3 A;  1JTA A;  2NTP A;  2PYH A;  4Z06 A;  1BHE A;  3VSU A;  4YEL A;  3LMW A;  3EQO A;  4XNF A;  2X6Y A;  2QY1 A;  1O8D A;  3ZSC A;  2INV A;  4OJ6 A;  2NZM A;  1IDJ A;  2X85 A;  2X6W A;  2Z8G A;  4OJO A;  1O8J A;  4XL9 A;  3VSV A;  3T9G A;  1CZF A;  4W8S A;  1WMR A;  4NK6 A;  3GQA A;  2UVF A;  4YZX A;  4OJL A;  4XM3 A;  1IDK A;  3JUR A;  4XN3 A;  4XOP A;  4MXN A;  3ZPP A;  2VJJ A;  1OGO X;  3B8Y A;  1O8M A;  2QXZ A;  2NT9 A;  2VBE A;  2NSP A;  4XLF A;  4XKV A;  2BSP A;  3WWG A;  1X0C A;  2VBM A;  5C1E A;  2X6X A;  4W8Q A;  4W8T A;  4OZZ A;  1O88 A;  2O1D A;  2NT6 A;  1O8G A;  3UW0 A;  2NTB A;  2ODL A;  3GQ8 A;  2INU A;  2PYG A;  4OZY A;  4YZQ A;  4I84 A;  3GQ7 A;  5C1C A;  4U49 A;  1PLU A;  3VMW A;  2O0V A;  1DBG A;  3SUC A;  4YEJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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