1QA2A

Tailspike protein, mutant a334v
Total Genus 187
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
187
sequence length
554
structure length
542
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSVQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein/receptor
molecule keywords TAILSPIKE PROTEIN
publication title Mutations improving the folding of phage P22 tailspike protein affect its receptor binding activity.
pubmed doi rcsb
source organism Enterobacteria phage p22
total genus 187
structure length 542
sequence length 554
ec nomenclature
pdb deposition date 1999-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1qa2A00
3TH0A 1CLWA 1TYXA 2XC1A 2IOUG 3ML3A 2VFPA 3H09A 2VFMA 1TYVA 1QRBA 1TYWA 2VFOA 1QRCA 3SYJA 4KH3A 3AK5A 1TSPA 1QQ1A 1TYUA 2VFNA 1DABA 1WXRA 1QA3A 3SZEA 1QA2A 1QA1A 2V5IA 4OM9A 3RIQA 2VFQA
chains in the Genus database with same CATH superfamily
3SQVA 1O8EA 4XLEA 1BHEA 1CLWA 2INVA 3B90A 1O8MA 5JMCB 2NT9A 2PECA 1IA5A 2NSTA 1PXZA 2O1DA 3EQNA 1K4ZA 1QRCA 4YELA 3SYJA 1JTAA 1QQ1A 3VSUA 2UVFA 3JX8A 1NHCA 1WXRA 3BH7B 1QA3A 4URRA 1EA0A 4YFOA 2W7ZA 1O8IA 2X6XA 1LLZA 2XT2A 1DBGA 1RU4A 1HF2A 3B4NA 4YZXA 4PMHA 3SY2A 3SZEA 2X6YA 2XT4A 4OM9A 4YCQA 1EZGA 3P4GA 4YZAA 4XR6A 3N6ZA 4YDTA 4YZQA 5JLVC 2VJIA 4XLHA 2O17A 4NK8A 2PYHA 3KRGA 2EWEA 2BX6A 2IOUG 1OFDA 3ML3A 4MR0A 1L1IA 1LM1A 1TYVA 4XKVA 4XN3A 2BM7A 1VBLA 1TYWA 3NAWA 3PSSA 4W8QA 2VBEA 2Z8GA 2O04A 4XONA 1OOCA 4U49A 1IDJA 3N90A 3VMWA 3AK5A 4V02C 1O88A 1TYUA 3EQOA 1WMRA 4NK6A 1KCDA 4OJLA 1O8GA 2QYUA 3JURA 1O8JA 1H80A 4I84A 4OZZA 4OJ6A 4XOPA 4EW9A 1IB4A 1IDKA 1CZFA 4W8RA 3VSTA 3ZPPA 3BH6B 1X0CA 4OPWA 4OJPA 1OGMX 2QX3A 3RIQA 1PLUA 3GQ8A 2J8KA 4XL9A 5DNSA 2O0VA 3TH0A 1TYXA 2XC1A 4XM3A 2NTBA 4W8TA 3WWGA 2UVEA 4XOTA 1XG2A 1O8FA 2VFMA 2O0WA 4YEJA 2VBMA 1KCCA 1GQ8A 2XTXA 3UW0A 3B8YA 4XQFA 3ZSCA 3LJYA 4XLAA 4Z06A 4JRAC 2QXZA 1DABA 1BN8A 1OFEA 3DU1X 1O8DA 1OFLA 2B0RA 2BM5A 2NTQA 2X85A 3GQ9A 1JRGA 4YC5A 1QA2A 2BM4A 1EE6A 1QA1A 1HG8A 4C2LA 2X6WA 2VFQA 4OZYA 2F3LA 5C1CA 1O8LA 2BSPA 4Z03A 1RWRA 3GQ7A 2O6WA 4U4BA 3FY3A 1OFMA 4Z05A 3T9GA 4XKWA 3NB2A 2PYGA 2VFPA 3H09A 3PSZA 4XLCA 2QY1A 3VMVA 3LMWA 1KQ5A 4HWVA 1QRBA 1QJVA 1OGOX 2G0YA 2J8IA 2NZMA 2YUHA 2VFOA 2XTYA 4OJOA 4W8SA 1DBOA 2IQ7A 1O8KA 4KH3A 2BM6A 3LYCA 1AIRA 2X3HA 3GQAA 1TSPA 1PE9A 4XN0A 2VFNA 1K8FA 4XORA 5C1EA 4XMYA 3PETA 4AVZA 1O8HA 2VBKA 4YEIA 2NT6A 2QZAA 2XTWA 2NTPA 1LLWA 3VSVA 1K5CA 2VJJA 4MXNA 2ODLA 3GRHA 4XNFA 2INUA 4YZ0A 2V5IA 2NSPA 1KTWA 3SUCA 4OJ5A 1RMGA 4XLFA 5AMVA 1QCXA
chains in the Genus database with same CATH topology
3TH0A 1CLWA 1TYXA 2XC1A 2BX6A 2IOUG 3ML3A 2VFPA 3H09A 2VFMA 1TYVA 5JMCB 2BM7A 1KQ5A 1QRBA 1TYWA 2G0YA 2J8IA 2YUHA 2VFOA 4OJOA 1K4ZA 1QRCA 3SYJA 4KH3A 2BM6A 3LYCA 3N90A 3AK5A 3LJYA 1TSPA 4JRAC 4V02C 1QQ1A 1TYUA 2VFNA 3JX8A 1DABA 1WXRA 3BH7B 1QA3A 1K8FA 2B0RA 2BM5A 3PETA 4OJLA 2W7ZA 4OJ6A 3SZEA 1QA2A 1HF2A 2BM4A 1QA1A 3BH6B 4OPWA 2V5IA 4OJPA 4OM9A 2VFQA 3P4GA 3RIQA 2F3LA 3N6ZA 5JLVC 4OJ5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TH0 A;  1CLW A;  1TYX A;  2XC1 A;  2IOU G;  3ML3 A;  2VFP A;  3H09 A;  2VFM A;  1TYV A;  1QRB A;  1TYW A;  2VFO A;  1QRC A;  3SYJ A;  4KH3 A;  3AK5 A;  1TSP A;  1QQ1 A;  1TYU A;  2VFN A;  1DAB A;  1WXR A;  1QA3 A;  3SZE A;  1QA2 A;  1QA1 A;  2V5I A;  4OM9 A;  3RIQ A;  2VFQ A; 
#chains in the Genus database with same CATH topology
 3SQV A;  1O8E A;  4XLE A;  1BHE A;  1CLW A;  2INV A;  3B90 A;  1O8M A;  5JMC B;  2NT9 A;  2PEC A;  1IA5 A;  2NST A;  1PXZ A;  2O1D A;  3EQN A;  1K4Z A;  1QRC A;  4YEL A;  3SYJ A;  1JTA A;  1QQ1 A;  3VSU A;  2UVF A;  3JX8 A;  1NHC A;  1WXR A;  3BH7 B;  1QA3 A;  4URR A;  1EA0 A;  4YFO A;  2W7Z A;  1O8I A;  2X6X A;  1LLZ A;  2XT2 A;  1DBG A;  1RU4 A;  1HF2 A;  3B4N A;  4YZX A;  4PMH A;  3SY2 A;  3SZE A;  2X6Y A;  2XT4 A;  4OM9 A;  4YCQ A;  1EZG A;  3P4G A;  4YZA A;  4XR6 A;  3N6Z A;  4YDT A;  4YZQ A;  5JLV C;  2VJI A;  4XLH A;  2O17 A;  4NK8 A;  2PYH A;  3KRG A;  2EWE A;  2BX6 A;  2IOU G;  1OFD A;  3ML3 A;  4MR0 A;  1L1I A;  1LM1 A;  1TYV A;  4XKV A;  4XN3 A;  2BM7 A;  1VBL A;  1TYW A;  3NAW A;  3PSS A;  4W8Q A;  2VBE A;  2Z8G A;  2O04 A;  4XON A;  1OOC A;  4U49 A;  1IDJ A;  3N90 A;  3VMW A;  3AK5 A;  4V02 C;  1O88 A;  1TYU A;  3EQO A;  1WMR A;  4NK6 A;  1KCD A;  4OJL A;  1O8G A;  2QYU A;  3JUR A;  1O8J A;  1H80 A;  4I84 A;  4OZZ A;  4OJ6 A;  4XOP A;  4EW9 A;  1IB4 A;  1IDK A;  1CZF A;  4W8R A;  3VST A;  3ZPP A;  3BH6 B;  1X0C A;  4OPW A;  4OJP A;  1OGM X;  2QX3 A;  3RIQ A;  1PLU A;  3GQ8 A;  2J8K A;  4XL9 A;  5DNS A;  2O0V A;  3TH0 A;  1TYX A;  2XC1 A;  4XM3 A;  2NTB A;  4W8T A;  3WWG A;  2UVE A;  4XOT A;  1XG2 A;  1O8F A;  2VFM A;  2O0W A;  4YEJ A;  2VBM A;  1KCC A;  1GQ8 A;  2XTX A;  3UW0 A;  3B8Y A;  4XQF A;  3ZSC A;  3LJY A;  4XLA A;  4Z06 A;  4JRA C;  2QXZ A;  1DAB A;  1BN8 A;  1OFE A;  3DU1 X;  1O8D A;  1OFL A;  2B0R A;  2BM5 A;  2NTQ A;  2X85 A;  3GQ9 A;  1JRG A;  4YC5 A;  1QA2 A;  2BM4 A;  1EE6 A;  1QA1 A;  1HG8 A;  4C2L A;  2X6W A;  2VFQ A;  4OZY A;  2F3L A;  5C1C A;  1O8L A;  2BSP A;  4Z03 A;  1RWR A;  3GQ7 A;  2O6W A;  4U4B A;  3FY3 A;  1OFM A;  4Z05 A;  3T9G A;  4XKW A;  3NB2 A;  2PYG A;  2VFP A;  3H09 A;  3PSZ A;  4XLC A;  2QY1 A;  3VMV A;  3LMW A;  1KQ5 A;  4HWV A;  1QRB A;  1QJV A;  1OGO X;  2G0Y A;  2J8I A;  2NZM A;  2YUH A;  2VFO A;  2XTY A;  4OJO A;  4W8S A;  1DBO A;  2IQ7 A;  1O8K A;  4KH3 A;  2BM6 A;  3LYC A;  1AIR A;  2X3H A;  3GQA A;  1TSP A;  1PE9 A;  4XN0 A;  2VFN A;  1K8F A;  4XOR A;  5C1E A;  4XMY A;  3PET A;  4AVZ A;  1O8H A;  2VBK A;  4YEI A;  2NT6 A;  2QZA A;  2XTW A;  2NTP A;  1LLW A;  3VSV A;  1K5C A;  2VJJ A;  4MXN A;  2ODL A;  3GRH A;  4XNF A;  2INU A;  4YZ0 A;  2V5I A;  2NSP A;  1KTW A;  3SUC A;  4OJ5 A;  1RMG A;  4XLF A;  5AMV A;  1QCX A; 
#chains in the Genus database with same CATH homology
 3TH0 A;  1CLW A;  1TYX A;  2XC1 A;  2BX6 A;  2IOU G;  3ML3 A;  2VFP A;  3H09 A;  2VFM A;  1TYV A;  5JMC B;  2BM7 A;  1KQ5 A;  1QRB A;  1TYW A;  2G0Y A;  2J8I A;  2YUH A;  2VFO A;  4OJO A;  1K4Z A;  1QRC A;  3SYJ A;  4KH3 A;  2BM6 A;  3LYC A;  3N90 A;  3AK5 A;  3LJY A;  1TSP A;  4JRA C;  4V02 C;  1QQ1 A;  1TYU A;  2VFN A;  3JX8 A;  1DAB A;  1WXR A;  3BH7 B;  1QA3 A;  1K8F A;  2B0R A;  2BM5 A;  3PET A;  4OJL A;  2W7Z A;  4OJ6 A;  3SZE A;  1QA2 A;  1HF2 A;  2BM4 A;  1QA1 A;  3BH6 B;  4OPW A;  2V5I A;  4OJP A;  4OM9 A;  2VFQ A;  3P4G A;  3RIQ A;  2F3L A;  3N6Z A;  5JLV C;  4OJ5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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