1QA2A

Tailspike protein, mutant a334v
Total Genus 187
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
187
sequence length
554
structure length
542
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSVQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Mutations improving the folding of phage P22 tailspike protein affect its receptor binding activity.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral protein/receptor
molecule keywords TAILSPIKE PROTEIN
total genus 187
structure length 542
sequence length 554
ec nomenclature
pdb deposition date 1999-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1qa2A00
1TYUA 1DABA 3SZEA 3TH0A 3AK5A 1QQ1A 1TYWA 1WXRA 1TYVA 3RIQA 3ML3A 2V5IA 4OM9A 1TYXA 2VFQA 1QA1A 4KH3A 1QRCA 2VFMA 1QRBA 2VFNA 3SYJA 2VFPA 1TSPA 1QA2A 1QA3A 2VFOA 3H09A 2XC1A 2IOUG 1CLWA
chains in the Genus database with same CATH superfamily
2O0WA 1DABA 2NTBA 3BH6B 4OPWA 1IB4A 3B90A 3GQAA 4XL9A 4U49A 1TYWA 3T9GA 4I84A 2NT9A 1LLWA 4Z05A 4XLFA 3LMWA 2NSPA 3GQ8A 3SUCA 1RMGA 2O17A 1OOCA 4XOPA 4W8SA 2BX6A 1H80A 1JTAA 2INVA 1O8MA 4OM9A 4XNFA 5C1EA 1QA1A 4KH3A 2G0YA 4OJPA 3WWGA 1CZFA 1EA0A 1QRBA 4OJLA 4YFOA 1EE6A 1OGMX 1LLZA 3UW0A 2VBMA 2VBEA 2QXZA 2PECA 2Z8GA 3H09A 4OZZA 2X6XA 4Z06A 2NT6A 2XC1A 2VBKA 1HF2A 3LYCA 1TYUA 1O8LA 3AK5A 2O6WA 1HG8A 4U4BA 1WXRA 1TYVA 1OFDA 3VSTA 1BN8A 4XLHA 3RIQA 2NSTA 4YELA 1KTWA 3EQOA 1L1IA 2NZMA 3PSZA 4XLAA 2YUHA 1X0CA 1IDJA 3ML3A 2INUA 4YZAA 4YDTA 3JURA 3ZPPA 1BHEA 1TYXA 2VFQA 3GQ9A 4XQFA 2UVFA 2VFMA 1K8FA 2BM5A 1PXZA 2NTPA 2QZAA 2VFNA 1TSPA 4YCQA 2PYHA 5JMCB 1QA2A 2O1DA 1QA3A 2X6WA 1RU4A 1IDKA 4XORA 2VFOA 1NHCA 4EW9A 3BH7B 2IOUG 2O04A 1LM1A 4AVZA 3GRHA 2X6YA 4HWVA 4W8RA 3SZEA 3TH0A 4XLCA 2XTXA 2EWEA 4YC5A 2IQ7A 5AMVA 3SY2A 1PE9A 1QQ1A 4MR0A 2BM4A 1DBOA 3VMVA 4YZ0A 3PSSA 1QJVA 4V02C 1VBLA 1RWRA 1O8KA 3DU1X 4JRAC 3GQ7A 1IA5A 2X85A 4XMYA 2J8KA 4OJ5A 4YEIA 4C2LA 1KCDA 3N90A 4YEJA 1WMRA 4XN0A 1OFLA 3VMWA 3NB2A 2XT4A 3B4NA 1JRGA 4W8TA 1EZGA 1O8HA 1QRCA 1OFEA 2J8IA 4URRA 1QCXA 2XT2A 2XTYA 2BM6A 2F3LA 4W8QA 1KCCA 3VSUA 4XR6A 1OGOX 2BSPA 4YZQA 1DBGA 1O8FA 4OZYA 4XKWA 2QY1A 2W7ZA 1O8JA 4XM3A 4Z03A 5JLVC 2VJJA 1K4ZA 1O88A 4NK6A 4YZXA 3NAWA 4XKVA 3SQVA 2XTWA 3PETA 4OJ6A 3LJYA 2B0RA 2PYGA 1KQ5A 1O8GA 2ODLA 2VJIA 1O8IA 4OJOA 3P4GA 4XOTA 3JX8A 1PLUA 5DNSA 4NK8A 3FY3A 2V5IA 1OFMA 4MXNA 3N6ZA 1XG2A 4XLEA 1O8DA 2O0VA 2BM7A 3ZSCA 2UVEA 2NTQA 3SYJA 2VFPA 3VSVA 3EQNA 2QX3A 4XN3A 3B8YA 1O8EA 1AIRA 2QYUA 5C1CA 4PMHA 4XONA 1GQ8A 1CLWA 2X3HA 1K5CA 3KRGA
chains in the Genus database with same CATH topology
1TYUA 1DABA 3SZEA 3TH0A 3AK5A 2W7ZA 3BH6B 5JLVC 1QQ1A 4OPWA 2BM4A 1K4ZA 4V02C 1TYWA 1WXRA 1TYVA 4JRAC 3PETA 3RIQA 4OJ6A 3LJYA 2B0RA 1KQ5A 4OJ5A 4OJOA 2YUHA 3P4GA 3N90A 2BX6A 3JX8A 3ML3A 2V5IA 4OM9A 1TYXA 2VFQA 3N6ZA 1QA1A 4KH3A 2G0YA 4OJPA 1QRCA 2BM7A 1K8FA 2BM5A 1QRBA 2VFMA 2VFNA 4OJLA 1TSPA 2VFPA 2J8IA 3SYJA 5JMCB 1QA2A 1QA3A 2VFOA 3H09A 2BM6A 2F3LA 3BH7B 2XC1A 2IOUG 1CLWA 1HF2A 3LYCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TYU A;  1DAB A;  3SZE A;  3TH0 A;  3AK5 A;  1QQ1 A;  1TYW A;  1WXR A;  1TYV A;  3RIQ A;  3ML3 A;  2V5I A;  4OM9 A;  1TYX A;  2VFQ A;  1QA1 A;  4KH3 A;  1QRC A;  2VFM A;  1QRB A;  2VFN A;  3SYJ A;  2VFP A;  1TSP A;  1QA2 A;  1QA3 A;  2VFO A;  3H09 A;  2XC1 A;  2IOU G;  1CLW A; 
#chains in the Genus database with same CATH topology
 2O0W A;  1DAB A;  2NTB A;  3BH6 B;  4OPW A;  1IB4 A;  3B90 A;  3GQA A;  4XL9 A;  4U49 A;  1TYW A;  3T9G A;  4I84 A;  2NT9 A;  1LLW A;  4Z05 A;  4XLF A;  3LMW A;  2NSP A;  3GQ8 A;  3SUC A;  1RMG A;  2O17 A;  1OOC A;  4XOP A;  4W8S A;  2BX6 A;  1H80 A;  1JTA A;  2INV A;  1O8M A;  4OM9 A;  4XNF A;  5C1E A;  1QA1 A;  4KH3 A;  2G0Y A;  4OJP A;  3WWG A;  1CZF A;  1EA0 A;  1QRB A;  4OJL A;  4YFO A;  1EE6 A;  1OGM X;  1LLZ A;  3UW0 A;  2VBM A;  2VBE A;  2QXZ A;  2PEC A;  2Z8G A;  3H09 A;  4OZZ A;  2X6X A;  4Z06 A;  2NT6 A;  2XC1 A;  2VBK A;  1HF2 A;  3LYC A;  1TYU A;  1O8L A;  3AK5 A;  2O6W A;  1HG8 A;  4U4B A;  1WXR A;  1TYV A;  1OFD A;  3VST A;  1BN8 A;  4XLH A;  3RIQ A;  2NST A;  4YEL A;  1KTW A;  3EQO A;  1L1I A;  2NZM A;  3PSZ A;  4XLA A;  2YUH A;  1X0C A;  1IDJ A;  3ML3 A;  2INU A;  4YZA A;  4YDT A;  3JUR A;  3ZPP A;  1BHE A;  1TYX A;  2VFQ A;  3GQ9 A;  4XQF A;  2UVF A;  2VFM A;  1K8F A;  2BM5 A;  1PXZ A;  2NTP A;  2QZA A;  2VFN A;  1TSP A;  4YCQ A;  2PYH A;  5JMC B;  1QA2 A;  2O1D A;  1QA3 A;  2X6W A;  1RU4 A;  1IDK A;  4XOR A;  2VFO A;  1NHC A;  4EW9 A;  3BH7 B;  2IOU G;  2O04 A;  1LM1 A;  4AVZ A;  3GRH A;  2X6Y A;  4HWV A;  4W8R A;  3SZE A;  3TH0 A;  4XLC A;  2XTX A;  2EWE A;  4YC5 A;  2IQ7 A;  5AMV A;  3SY2 A;  1PE9 A;  1QQ1 A;  4MR0 A;  2BM4 A;  1DBO A;  3VMV A;  4YZ0 A;  3PSS A;  1QJV A;  4V02 C;  1VBL A;  1RWR A;  1O8K A;  3DU1 X;  4JRA C;  3GQ7 A;  1IA5 A;  2X85 A;  4XMY A;  2J8K A;  4OJ5 A;  4YEI A;  4C2L A;  1KCD A;  3N90 A;  4YEJ A;  1WMR A;  4XN0 A;  1OFL A;  3VMW A;  3NB2 A;  2XT4 A;  3B4N A;  1JRG A;  4W8T A;  1EZG A;  1O8H A;  1QRC A;  1OFE A;  2J8I A;  4URR A;  1QCX A;  2XT2 A;  2XTY A;  2BM6 A;  2F3L A;  4W8Q A;  1KCC A;  3VSU A;  4XR6 A;  1OGO X;  2BSP A;  4YZQ A;  1DBG A;  1O8F A;  4OZY A;  4XKW A;  2QY1 A;  2W7Z A;  1O8J A;  4XM3 A;  4Z03 A;  5JLV C;  2VJJ A;  1K4Z A;  1O88 A;  4NK6 A;  4YZX A;  3NAW A;  4XKV A;  3SQV A;  2XTW A;  3PET A;  4OJ6 A;  3LJY A;  2B0R A;  2PYG A;  1KQ5 A;  1O8G A;  2ODL A;  2VJI A;  1O8I A;  4OJO A;  3P4G A;  4XOT A;  3JX8 A;  1PLU A;  5DNS A;  4NK8 A;  3FY3 A;  2V5I A;  1OFM A;  4MXN A;  3N6Z A;  1XG2 A;  4XLE A;  1O8D A;  2O0V A;  2BM7 A;  3ZSC A;  2UVE A;  2NTQ A;  3SYJ A;  2VFP A;  3VSV A;  3EQN A;  2QX3 A;  4XN3 A;  3B8Y A;  1O8E A;  1AIR A;  2QYU A;  5C1C A;  4PMH A;  4XON A;  1GQ8 A;  1CLW A;  2X3H A;  1K5C A;  3KRG A; 
#chains in the Genus database with same CATH homology
 1TYU A;  1DAB A;  3SZE A;  3TH0 A;  3AK5 A;  2W7Z A;  3BH6 B;  5JLV C;  1QQ1 A;  4OPW A;  2BM4 A;  1K4Z A;  4V02 C;  1TYW A;  1WXR A;  1TYV A;  4JRA C;  3PET A;  3RIQ A;  4OJ6 A;  3LJY A;  2B0R A;  1KQ5 A;  4OJ5 A;  4OJO A;  2YUH A;  3P4G A;  3N90 A;  2BX6 A;  3JX8 A;  3ML3 A;  2V5I A;  4OM9 A;  1TYX A;  2VFQ A;  3N6Z A;  1QA1 A;  4KH3 A;  2G0Y A;  4OJP A;  1QRC A;  2BM7 A;  1K8F A;  2BM5 A;  1QRB A;  2VFM A;  2VFN A;  4OJL A;  1TSP A;  2VFP A;  2J8I A;  3SYJ A;  5JMC B;  1QA2 A;  1QA3 A;  2VFO A;  3H09 A;  2BM6 A;  2F3L A;  3BH7 B;  2XC1 A;  2IOU G;  1CLW A;  1HF2 A;  3LYC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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