1QA2A

Tailspike protein, mutant a334v
Total Genus 187
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
187
sequence length
554
structure length
542
Chain Sequence
b'YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSVQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords TAILSPIKE PROTEIN
publication title Mutations improving the folding of phage P22 tailspike protein affect its receptor binding activity.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral protein/receptor
total genus 187
structure length 542
sequence length 554
ec nomenclature
pdb deposition date 1999-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1qa2A00
1QA2A 1QQ1A 1TYXA 1QA1A 2XC1A 1TYVA 2V5IA 2VFMA 3ML3A 3SYJA 2VFOA 1CLWA 2VFNA 3RIQA 1TYWA 3TH0A 4OM9A 2IOUG 3SZEA 1QRCA 1WXRA 3AK5A 1DABA 2VFPA 1QRBA 3H09A 1QA3A 2VFQA 1TSPA 4KH3A 1TYUA
chains in the Genus database with same CATH superfamily
1QCXA 4NK6A 5JLVC 3PETA 2YUHA 3EQNA 3GQ8A 1O8GA 3GQ9A 2PYGA 4URRA 1NHCA 1IA5A 1KCCA 1QA1A 2X6YA 1GQ8A 3B4NA 3WWGA 2X3HA 2X6XA 1CLWA 4XLEA 2VFNA 1AIRA 1RU4A 3LJYA 1KQ5A 2Z8GA 2VJJA 4XM3A 4OZYA 1EZGA 3UW0A 4XQFA 2F3LA 5C1EA 4XKWA 4OZZA 4W8QA 1OGOX 1QRCA 2QXZA 2G0YA 1OGMX 2VJIA 3AK5A 1DABA 3FY3A 1DBOA 4XKVA 1QRBA 4XONA 3N6ZA 1QA3A 1TSPA 2BM5A 3VMWA 2XTXA 2J8KA 4XLCA 1QA2A 4YEJA 4Z03A 2QX3A 2BSPA 4XLAA 4YFOA 3P4GA 3NAWA 5C1CA 2VBMA 1HG8A 1O8EA 2NTBA 4HWVA 1O8DA 1TYVA 1IDKA 1HF2A 3SYJA 2VFOA 4XNFA 3RIQA 1TYWA 1O8MA 1DBGA 3KRGA 3T9GA 1VBLA 1O8HA 2X85A 4YZAA 2NT6A 2QYUA 1O8JA 4V02C 1OFLA 2NZMA 4XOTA 3SQVA 3SY2A 3SUCA 1JTAA 1L1IA 1KTWA 2W7ZA 3DU1X 4I84A 1LLZA 2QY1A 1O8FA 3ZSCA 2VFPA 1K4ZA 4OJ5A 2PYHA 2O04A 3H09A 3ZPPA 4C2LA 3GRHA 2PECA 2NTQA 1X0CA 3SZEA 1TYUA 2O1DA 2QZAA 4U49A 1PE9A 4XN3A 1OFDA 4YDTA 1BHEA 2BM6A 2X6WA 3JX8A 3VSVA 1EA0A 1OFEA 4YCQA 4AVZA 4PMHA 5AMVA 4YZXA 2XC1A 2XT4A 2INVA 3NB2A 1PLUA 1O8KA 1RWRA 1LLWA 4EW9A 2O0WA 1BN8A 2EWEA 2UVFA 1O8IA 3B90A 4W8SA 1EE6A 4XR6A 2NTPA 2J8IA 3EQOA 3LMWA 2XTYA 3PSZA 4XN0A 1LM1A 3VSTA 1KCDA 1OOCA 1K5CA 4OJOA 4YZQA 3VMVA 4XOPA 1IB4A 2NT9A 3GQAA 2NSPA 2ODLA 4OPWA 5JMCB 2O0VA 4JRAC 1K8FA 2O6WA 4XORA 1O8LA 2NSTA 1XG2A 1CZFA 2IQ7A 1QQ1A 4MXNA 4OJLA 4U4BA 4W8RA 4XL9A 1TYXA 4NK8A 5DNSA 1H80A 2V5IA 2XTWA 2VFMA 3BH6B 3ML3A 4MR0A 2BM7A 2INUA 2B0RA 3VSUA 1PXZA 4W8TA 3TH0A 1JRGA 1RMGA 4OM9A 4XLHA 2IOUG 4OJ6A 2VBKA 2BX6A 2VBEA 4YC5A 4YZ0A 2BM4A 3GQ7A 1IDJA 1WXRA 1WMRA 1QJVA 3LYCA 4YEIA 4XLFA 4YELA 3B8YA 3PSSA 4XMYA 4Z05A 2XT2A 4Z06A 3N90A 2O17A 2VFQA 4OJPA 1O88A 2UVEA 3JURA 3BH7B 1OFMA 4KH3A
chains in the Genus database with same CATH topology
4JRAC 1K8FA 1QA2A 5JLVC 1QQ1A 3PETA 4OJLA 2BM6A 1TSPA 2YUHA 3JX8A 3P4GA 1TYXA 1QA1A 2XC1A 1TYVA 2V5IA 3BH6B 1HF2A 2VFMA 3ML3A 3SYJA 2VFOA 2BM7A 1CLWA 2B0RA 2VFNA 3RIQA 1TYWA 3LJYA 3TH0A 1KQ5A 4OM9A 2IOUG 4OJ6A 2BX6A 2J8IA 3SZEA 4V02C 2F3LA 1QRCA 2BM4A 2G0YA 2W7ZA 4OJOA 1WXRA 3AK5A 3LYCA 1DABA 2VFPA 1K4ZA 4OJ5A 1QRBA 3H09A 3N90A 3N6ZA 4OJPA 2VFQA 1QA3A 4OPWA 3BH7B 2BM5A 4KH3A 1TYUA 5JMCB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QA2 A;  1QQ1 A;  1TYX A;  1QA1 A;  2XC1 A;  1TYV A;  2V5I A;  2VFM A;  3ML3 A;  3SYJ A;  2VFO A;  1CLW A;  2VFN A;  3RIQ A;  1TYW A;  3TH0 A;  4OM9 A;  2IOU G;  3SZE A;  1QRC A;  1WXR A;  3AK5 A;  1DAB A;  2VFP A;  1QRB A;  3H09 A;  1QA3 A;  2VFQ A;  1TSP A;  4KH3 A;  1TYU A; 
#chains in the Genus database with same CATH topology
 1QCX A;  4NK6 A;  5JLV C;  3PET A;  2YUH A;  3EQN A;  3GQ8 A;  1O8G A;  3GQ9 A;  2PYG A;  4URR A;  1NHC A;  1IA5 A;  1KCC A;  1QA1 A;  2X6Y A;  1GQ8 A;  3B4N A;  3WWG A;  2X3H A;  2X6X A;  1CLW A;  4XLE A;  2VFN A;  1AIR A;  1RU4 A;  3LJY A;  1KQ5 A;  2Z8G A;  2VJJ A;  4XM3 A;  4OZY A;  1EZG A;  3UW0 A;  4XQF A;  2F3L A;  5C1E A;  4XKW A;  4OZZ A;  4W8Q A;  1OGO X;  1QRC A;  2QXZ A;  2G0Y A;  1OGM X;  2VJI A;  3AK5 A;  1DAB A;  3FY3 A;  1DBO A;  4XKV A;  1QRB A;  4XON A;  3N6Z A;  1QA3 A;  1TSP A;  2BM5 A;  3VMW A;  2XTX A;  2J8K A;  4XLC A;  1QA2 A;  4YEJ A;  4Z03 A;  2QX3 A;  2BSP A;  4XLA A;  4YFO A;  3P4G A;  3NAW A;  5C1C A;  2VBM A;  1HG8 A;  1O8E A;  2NTB A;  4HWV A;  1O8D A;  1TYV A;  1IDK A;  1HF2 A;  3SYJ A;  2VFO A;  4XNF A;  3RIQ A;  1TYW A;  1O8M A;  1DBG A;  3KRG A;  3T9G A;  1VBL A;  1O8H A;  2X85 A;  4YZA A;  2NT6 A;  2QYU A;  1O8J A;  4V02 C;  1OFL A;  2NZM A;  4XOT A;  3SQV A;  3SY2 A;  3SUC A;  1JTA A;  1L1I A;  1KTW A;  2W7Z A;  3DU1 X;  4I84 A;  1LLZ A;  2QY1 A;  1O8F A;  3ZSC A;  2VFP A;  1K4Z A;  4OJ5 A;  2PYH A;  2O04 A;  3H09 A;  3ZPP A;  4C2L A;  3GRH A;  2PEC A;  2NTQ A;  1X0C A;  3SZE A;  1TYU A;  2O1D A;  2QZA A;  4U49 A;  1PE9 A;  4XN3 A;  1OFD A;  4YDT A;  1BHE A;  2BM6 A;  2X6W A;  3JX8 A;  3VSV A;  1EA0 A;  1OFE A;  4YCQ A;  4AVZ A;  4PMH A;  5AMV A;  4YZX A;  2XC1 A;  2XT4 A;  2INV A;  3NB2 A;  1PLU A;  1O8K A;  1RWR A;  1LLW A;  4EW9 A;  2O0W A;  1BN8 A;  2EWE A;  2UVF A;  1O8I A;  3B90 A;  4W8S A;  1EE6 A;  4XR6 A;  2NTP A;  2J8I A;  3EQO A;  3LMW A;  2XTY A;  3PSZ A;  4XN0 A;  1LM1 A;  3VST A;  1KCD A;  1OOC A;  1K5C A;  4OJO A;  4YZQ A;  3VMV A;  4XOP A;  1IB4 A;  2NT9 A;  3GQA A;  2NSP A;  2ODL A;  4OPW A;  5JMC B;  2O0V A;  4JRA C;  1K8F A;  2O6W A;  4XOR A;  1O8L A;  2NST A;  1XG2 A;  1CZF A;  2IQ7 A;  1QQ1 A;  4MXN A;  4OJL A;  4U4B A;  4W8R A;  4XL9 A;  1TYX A;  4NK8 A;  5DNS A;  1H80 A;  2V5I A;  2XTW A;  2VFM A;  3BH6 B;  3ML3 A;  4MR0 A;  2BM7 A;  2INU A;  2B0R A;  3VSU A;  1PXZ A;  4W8T A;  3TH0 A;  1JRG A;  1RMG A;  4OM9 A;  4XLH A;  2IOU G;  4OJ6 A;  2VBK A;  2BX6 A;  2VBE A;  4YC5 A;  4YZ0 A;  2BM4 A;  3GQ7 A;  1IDJ A;  1WXR A;  1WMR A;  1QJV A;  3LYC A;  4YEI A;  4XLF A;  4YEL A;  3B8Y A;  3PSS A;  4XMY A;  4Z05 A;  2XT2 A;  4Z06 A;  3N90 A;  2O17 A;  2VFQ A;  4OJP A;  1O88 A;  2UVE A;  3JUR A;  3BH7 B;  1OFM A;  4KH3 A; 
#chains in the Genus database with same CATH homology
 4JRA C;  1K8F A;  1QA2 A;  5JLV C;  1QQ1 A;  3PET A;  4OJL A;  2BM6 A;  1TSP A;  2YUH A;  3JX8 A;  3P4G A;  1TYX A;  1QA1 A;  2XC1 A;  1TYV A;  2V5I A;  3BH6 B;  1HF2 A;  2VFM A;  3ML3 A;  3SYJ A;  2VFO A;  2BM7 A;  1CLW A;  2B0R A;  2VFN A;  3RIQ A;  1TYW A;  3LJY A;  3TH0 A;  1KQ5 A;  4OM9 A;  2IOU G;  4OJ6 A;  2BX6 A;  2J8I A;  3SZE A;  4V02 C;  2F3L A;  1QRC A;  2BM4 A;  2G0Y A;  2W7Z A;  4OJO A;  1WXR A;  3AK5 A;  3LYC A;  1DAB A;  2VFP A;  1K4Z A;  4OJ5 A;  1QRB A;  3H09 A;  3N90 A;  3N6Z A;  4OJP A;  2VFQ A;  1QA3 A;  4OPW A;  3BH7 B;  2BM5 A;  4KH3 A;  1TYU A;  5JMC B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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