1QA2A

Tailspike protein, mutant a334v
Total Genus 187
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
187
sequence length
554
structure length
542
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSVQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords TAILSPIKE PROTEIN
publication title Mutations improving the folding of phage P22 tailspike protein affect its receptor binding activity.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral protein/receptor
total genus 187
structure length 542
sequence length 554
ec nomenclature
pdb deposition date 1999-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1qa2A00
2VFNA 1QRBA 3ML3A 3SZEA 2XC1A 1DABA 4OM9A 1CLWA 2V5IA 1TYWA 4KH3A 3TH0A 1TYVA 2VFPA 1TYUA 2IOUG 3RIQA 2VFOA 1QRCA 3SYJA 1QA2A 1QA1A 2VFQA 3AK5A 2VFMA 1WXRA 1QQ1A 1TYXA 1TSPA 3H09A 1QA3A
chains in the Genus database with same CATH superfamily
2VBEA 3ML3A 1RMGA 1LM1A 1K8FA 1O8DA 3B90A 5C1CA 2UVEA 5JLVC 2XTWA 4OJPA 1CZFA 1OFEA 2NT9A 1KCCA 1JTAA 3PETA 1O8HA 2V5IA 4YC5A 2VBKA 4YZQA 1O8GA 1K5CA 2BM4A 4XKWA 2XTXA 2O17A 4NK8A 1DBOA 4OPWA 2NTQA 2QXZA 4Z03A 2IQ7A 1OFLA 3DU1X 3FY3A 1QRCA 3SUCA 3T9GA 3SYJA 1QA2A 2O1DA 1KTWA 2W7ZA 4OJOA 1KQ5A 2INUA 1IDJA 1TYXA 1O8IA 2NSTA 3H09A 4NK6A 2X6XA 4V02C 1EZGA 4XLFA 4XOPA 1PE9A 1WMRA 4MR0A 3JURA 3SZEA 2UVFA 1EE6A 2XC1A 2F3LA 2X85A 3KRGA 1OFMA 2EWEA 3VMWA 1XG2A 2VBMA 1EA0A 4OJ5A 4YFOA 1L1IA 4XN0A 1TYUA 2VJJA 3PSSA 2YUHA 2B0RA 1OGOX 2IOUG 3GQAA 2INVA 2BSPA 1O8LA 3N90A 1OGMX 4XLEA 4YCQA 2PYHA 3RIQA 1IB4A 2BM5A 3VSUA 2NSPA 4Z05A 1QA1A 4OZZA 2VFQA 1O8MA 3JX8A 4W8SA 1QQ1A 1TSPA 3ZSCA 1QA3A 2VFNA 1QRBA 2NT6A 1O8JA 2O0WA 4YZXA 2NTBA 1VBLA 4Z06A 4EW9A 1PXZA 4PMHA 5DNSA 1BN8A 1PLUA 4XNFA 1IDKA 4AVZA 4XOTA 4XQFA 2QX3A 4OM9A 2BX6A 4XKVA 3VSVA 3WWGA 3PSZA 3TH0A 2PYGA 3B4NA 2VFPA 1QCXA 2XT4A 4YELA 2QYUA 3EQOA 4XONA 3VSTA 2X6WA 3UW0A 1O8FA 4YZ0A 1O88A 2J8KA 2VFOA 3LMWA 3EQNA 3BH7B 4XR6A 1HG8A 4YDTA 2XTYA 2ODLA 3SQVA 4XMYA 3AK5A 1GQ8A 1DBGA 4W8TA 3NB2A 3LJYA 4I84A 1WXRA 3GRHA 2X6YA 4OZYA 4YEJA 4U4BA 2NZMA 4XORA 3P4GA 4OJ6A 1LLWA 2PECA 1HF2A 2QZAA 2O6WA 1O8KA 2BM6A 2O0VA 3BH6B 2QY1A 3B8YA 3GQ7A 4U49A 4XLHA 2O04A 2J8IA 4YZAA 1BHEA 1CLWA 3GQ9A 3N6ZA 5AMVA 4C2LA 1TYWA 4KH3A 4OJLA 1TYVA 4W8QA 2XT2A 1LLZA 5C1EA 1OOCA 2NTPA 1K4ZA 2BM7A 1NHCA 4MXNA 1X0CA 1RU4A 3GQ8A 1RWRA 4W8RA 1AIRA 4URRA 4XL9A 4JRAC 4XLAA 1IA5A 1QJVA 1KCDA 4HWVA 2X3HA 1H80A 3VMVA 1OFDA 3ZPPA 2VFMA 3NAWA 4XLCA 2G0YA 4XN3A 2VJIA 3SY2A 5JMCB 3LYCA 2Z8GA 1DABA 4YEIA 1JRGA 1O8EA 4XM3A
chains in the Genus database with same CATH topology
2VFNA 1QRBA 1HF2A 3ML3A 1K8FA 3SZEA 5JLVC 2BM6A 4OJPA 3BH6B 2XC1A 2F3LA 2J8IA 3PETA 4OM9A 2BX6A 1CLWA 2V5IA 3N6ZA 1DABA 1TYWA 4KH3A 4OJLA 3TH0A 1TYVA 2VFPA 2BM4A 4OJ5A 1TYUA 1K4ZA 2BM7A 2YUHA 2B0RA 4OPWA 2IOUG 3N90A 3RIQA 2VFOA 1QRCA 3SYJA 2BM5A 3BH7B 1QA2A 1QA1A 2VFQA 3AK5A 2W7ZA 2VFMA 1KQ5A 4OJOA 3JX8A 2G0YA 3LJYA 5JMCB 1WXRA 1QQ1A 1TYXA 3LYCA 1TSPA 3H09A 4V02C 4JRAC 1QA3A 3P4GA 4OJ6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VFN A;  1QRB A;  3ML3 A;  3SZE A;  2XC1 A;  1DAB A;  4OM9 A;  1CLW A;  2V5I A;  1TYW A;  4KH3 A;  3TH0 A;  1TYV A;  2VFP A;  1TYU A;  2IOU G;  3RIQ A;  2VFO A;  1QRC A;  3SYJ A;  1QA2 A;  1QA1 A;  2VFQ A;  3AK5 A;  2VFM A;  1WXR A;  1QQ1 A;  1TYX A;  1TSP A;  3H09 A;  1QA3 A; 
#chains in the Genus database with same CATH topology
 2VBE A;  3ML3 A;  1RMG A;  1LM1 A;  1K8F A;  1O8D A;  3B90 A;  5C1C A;  2UVE A;  5JLV C;  2XTW A;  4OJP A;  1CZF A;  1OFE A;  2NT9 A;  1KCC A;  1JTA A;  3PET A;  1O8H A;  2V5I A;  4YC5 A;  2VBK A;  4YZQ A;  1O8G A;  1K5C A;  2BM4 A;  4XKW A;  2XTX A;  2O17 A;  4NK8 A;  1DBO A;  4OPW A;  2NTQ A;  2QXZ A;  4Z03 A;  2IQ7 A;  1OFL A;  3DU1 X;  3FY3 A;  1QRC A;  3SUC A;  3T9G A;  3SYJ A;  1QA2 A;  2O1D A;  1KTW A;  2W7Z A;  4OJO A;  1KQ5 A;  2INU A;  1IDJ A;  1TYX A;  1O8I A;  2NST A;  3H09 A;  4NK6 A;  2X6X A;  4V02 C;  1EZG A;  4XLF A;  4XOP A;  1PE9 A;  1WMR A;  4MR0 A;  3JUR A;  3SZE A;  2UVF A;  1EE6 A;  2XC1 A;  2F3L A;  2X85 A;  3KRG A;  1OFM A;  2EWE A;  3VMW A;  1XG2 A;  2VBM A;  1EA0 A;  4OJ5 A;  4YFO A;  1L1I A;  4XN0 A;  1TYU A;  2VJJ A;  3PSS A;  2YUH A;  2B0R A;  1OGO X;  2IOU G;  3GQA A;  2INV A;  2BSP A;  1O8L A;  3N90 A;  1OGM X;  4XLE A;  4YCQ A;  2PYH A;  3RIQ A;  1IB4 A;  2BM5 A;  3VSU A;  2NSP A;  4Z05 A;  1QA1 A;  4OZZ A;  2VFQ A;  1O8M A;  3JX8 A;  4W8S A;  1QQ1 A;  1TSP A;  3ZSC A;  1QA3 A;  2VFN A;  1QRB A;  2NT6 A;  1O8J A;  2O0W A;  4YZX A;  2NTB A;  1VBL A;  4Z06 A;  4EW9 A;  1PXZ A;  4PMH A;  5DNS A;  1BN8 A;  1PLU A;  4XNF A;  1IDK A;  4AVZ A;  4XOT A;  4XQF A;  2QX3 A;  4OM9 A;  2BX6 A;  4XKV A;  3VSV A;  3WWG A;  3PSZ A;  3TH0 A;  2PYG A;  3B4N A;  2VFP A;  1QCX A;  2XT4 A;  4YEL A;  2QYU A;  3EQO A;  4XON A;  3VST A;  2X6W A;  3UW0 A;  1O8F A;  4YZ0 A;  1O88 A;  2J8K A;  2VFO A;  3LMW A;  3EQN A;  3BH7 B;  4XR6 A;  1HG8 A;  4YDT A;  2XTY A;  2ODL A;  3SQV A;  4XMY A;  3AK5 A;  1GQ8 A;  1DBG A;  4W8T A;  3NB2 A;  3LJY A;  4I84 A;  1WXR A;  3GRH A;  2X6Y A;  4OZY A;  4YEJ A;  4U4B A;  2NZM A;  4XOR A;  3P4G A;  4OJ6 A;  1LLW A;  2PEC A;  1HF2 A;  2QZA A;  2O6W A;  1O8K A;  2BM6 A;  2O0V A;  3BH6 B;  2QY1 A;  3B8Y A;  3GQ7 A;  4U49 A;  4XLH A;  2O04 A;  2J8I A;  4YZA A;  1BHE A;  1CLW A;  3GQ9 A;  3N6Z A;  5AMV A;  4C2L A;  1TYW A;  4KH3 A;  4OJL A;  1TYV A;  4W8Q A;  2XT2 A;  1LLZ A;  5C1E A;  1OOC A;  2NTP A;  1K4Z A;  2BM7 A;  1NHC A;  4MXN A;  1X0C A;  1RU4 A;  3GQ8 A;  1RWR A;  4W8R A;  1AIR A;  4URR A;  4XL9 A;  4JRA C;  4XLA A;  1IA5 A;  1QJV A;  1KCD A;  4HWV A;  2X3H A;  1H80 A;  3VMV A;  1OFD A;  3ZPP A;  2VFM A;  3NAW A;  4XLC A;  2G0Y A;  4XN3 A;  2VJI A;  3SY2 A;  5JMC B;  3LYC A;  2Z8G A;  1DAB A;  4YEI A;  1JRG A;  1O8E A;  4XM3 A; 
#chains in the Genus database with same CATH homology
 2VFN A;  1QRB A;  1HF2 A;  3ML3 A;  1K8F A;  3SZE A;  5JLV C;  2BM6 A;  4OJP A;  3BH6 B;  2XC1 A;  2F3L A;  2J8I A;  3PET A;  4OM9 A;  2BX6 A;  1CLW A;  2V5I A;  3N6Z A;  1DAB A;  1TYW A;  4KH3 A;  4OJL A;  3TH0 A;  1TYV A;  2VFP A;  2BM4 A;  4OJ5 A;  1TYU A;  1K4Z A;  2BM7 A;  2YUH A;  2B0R A;  4OPW A;  2IOU G;  3N90 A;  3RIQ A;  2VFO A;  1QRC A;  3SYJ A;  2BM5 A;  3BH7 B;  1QA2 A;  1QA1 A;  2VFQ A;  3AK5 A;  2W7Z A;  2VFM A;  1KQ5 A;  4OJO A;  3JX8 A;  2G0Y A;  3LJY A;  5JMC B;  1WXR A;  1QQ1 A;  1TYX A;  3LYC A;  1TSP A;  3H09 A;  4V02 C;  4JRA C;  1QA3 A;  3P4G A;  4OJ6 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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