2VFPA

Low temperature structure of p22 tailspike protein fragment (109-666), mutant v349l
Total Genus 208
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
208
sequence length
556
structure length
556
Chain Sequence
DQYSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGLIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords P22 TAILSPIKE PROTEIN
publication title Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein
rcsb
source organism Enterobacteria phage p22
total genus 208
structure length 556
sequence length 556
ec nomenclature ec 3.2.1.-:
pdb deposition date 2007-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2vfpA00
2XC1A 1TYXA 3TH0A 1TYVA 3SZEA 4KH3A 1QRBA 1TSPA 2VFOA 2VFPA 1QQ1A 2VFNA 1DABA 1WXRA 3H09A 1QRCA 2VFMA 3RIQA 3ML3A 2IOUG 3AK5A 4OM9A 2VFQA 1TYWA 1QA2A 1TYUA 1CLWA 1QA3A 3SYJA 1QA1A 2V5IA
chains in the Genus database with same CATH superfamily
2NSPA 2G0YA 1KCDA 4XN3A 1JRGA 3TH0A 4OJ5A 5DNSA 4KH3A 1QRBA 1TSPA 1BHEA 4YCQA 2VJJA 1K5CA 1QQ1A 1O8EA 3BH6B 2O1DA 1O8HA 1OFLA 4YELA 3SUCA 1IDJA 2VBMA 1X0CA 2X6YA 3H09A 4OJPA 1QRCA 1EE6A 2O0WA 1KTWA 3B4NA 3GQ8A 3VSUA 3ZSCA 1H80A 1DBOA 1O8GA 4I84A 2X85A 2B0RA 2J8IA 1NHCA 5JLVC 2NTQA 2QYUA 1PLUA 3NAWA 1JTAA 2XTYA 2J8KA 2BM6A 1CLWA 2W7ZA 3EQNA 3UW0A 4C2LA 4XLAA 4OJOA 2XT2A 1GQ8A 4EW9A 2NZMA 4XLCA 2XC1A 4HWVA 1HF2A 1LLWA 1KQ5A 1O8MA 3KRGA 4NK6A 4U4BA 2ODLA 3FY3A 3GRHA 4OJLA 1VBLA 4XORA 4Z03A 3VMWA 2X6XA 2O17A 4V02C 1PE9A 4W8RA 1OFEA 1HG8A 1EA0A 3T9GA 1O8DA 2INVA 4YEIA 2XTXA 4YZXA 3RIQA 2QZAA 3PSSA 1WMRA 2IOUG 1DBGA 1PXZA 3JURA 4XOTA 1O8JA 3SQVA 1TYWA 4NK8A 1QA2A 3P4GA 3SY2A 4XR6A 1IB4A 1RMGA 1TYUA 1K8FA 1L1IA 1QA3A 1CZFA 4Z05A 3VSTA 2Z8GA 3SYJA 4OZZA 4XMYA 4XOPA 2QY1A 2V5IA 1O8LA 5AMVA 2NTBA 2UVEA 3LJYA 3ZPPA 3SZEA 3JX8A 2UVFA 4U49A 1O8FA 2BX6A 2BM4A 2VFNA 2O0VA 3GQ7A 4Z06A 1OOCA 1DABA 3NB2A 2X6WA 2NSTA 2VFMA 2BSPA 2XTWA 1O88A 2O04A 3ML3A 1QCXA 3EQOA 1OFMA 1QJVA 4OM9A 4JRAC 4XONA 1IDKA 3GQAA 4XLFA 2X3HA 4YZAA 5C1CA 3B90A 3LMWA 5JMCB 4YZQA 3N90A 4XQFA 4OPWA 3LYCA 4PMHA 1OGMX 4MR0A 4OJ6A 4XN0A 4YFOA 4YDTA 2EWEA 4W8QA 1K4ZA 1LM1A 4W8TA 4URRA 2VBEA 3N6ZA 4XLHA 1RU4A 2QXZA 1QA1A 1KCCA 4OZYA 1O8IA 2NT6A 4W8SA 2PYGA 2BM7A 1LLZA 4MXNA 1TYXA 2NTPA 1TYVA 3VSVA 2VBKA 4XM3A 4YEJA 2QX3A 1OGOX 2F3LA 2VFOA 2VFPA 5C1EA 2YUHA 4YC5A 1XG2A 4XNFA 3VMVA 4AVZA 4YZ0A 1WXRA 2IQ7A 1BN8A 2BM5A 3BH7B 3PSZA 4XL9A 2PYHA 3AK5A 1AIRA 1RWRA 2O6WA 2VFQA 4XKVA 3GQ9A 3WWGA 1IA5A 2VJIA 1OFDA 2NT9A 2INUA 2PECA 2XT4A 3B8YA 3DU1X 1O8KA 4XKWA 4XLEA 1EZGA 3PETA
chains in the Genus database with same CATH topology
3LJYA 2G0YA 2XC1A 1HF2A 2BM7A 1KQ5A 1TYXA 3TH0A 1TYVA 3SZEA 4OJ5A 4KH3A 1QRBA 1TSPA 3JX8A 2VFOA 2VFPA 2F3LA 4OJLA 1QQ1A 3BH6B 4V02C 2YUHA 2BX6A 2BM4A 2VFNA 1DABA 1WXRA 3H09A 4OJPA 1QRCA 2VFMA 2BM5A 3BH7B 3RIQA 3ML3A 2IOUG 3AK5A 4OM9A 2B0RA 2J8IA 2VFQA 4JRAC 1TYWA 5JLVC 1QA2A 3P4GA 5JMCB 3N90A 4OPWA 3LYCA 1TYUA 1K8FA 4OJ6A 2BM6A 1CLWA 2W7ZA 1QA3A 1K4ZA 3N6ZA 3SYJA 4OJOA 1QA1A 2V5IA 3PETA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XC1 A;  1TYX A;  3TH0 A;  1TYV A;  3SZE A;  4KH3 A;  1QRB A;  1TSP A;  2VFO A;  2VFP A;  1QQ1 A;  2VFN A;  1DAB A;  1WXR A;  3H09 A;  1QRC A;  2VFM A;  3RIQ A;  3ML3 A;  2IOU G;  3AK5 A;  4OM9 A;  2VFQ A;  1TYW A;  1QA2 A;  1TYU A;  1CLW A;  1QA3 A;  3SYJ A;  1QA1 A;  2V5I A; 
#chains in the Genus database with same CATH topology
 2NSP A;  2G0Y A;  1KCD A;  4XN3 A;  1JRG A;  3TH0 A;  4OJ5 A;  5DNS A;  4KH3 A;  1QRB A;  1TSP A;  1BHE A;  4YCQ A;  2VJJ A;  1K5C A;  1QQ1 A;  1O8E A;  3BH6 B;  2O1D A;  1O8H A;  1OFL A;  4YEL A;  3SUC A;  1IDJ A;  2VBM A;  1X0C A;  2X6Y A;  3H09 A;  4OJP A;  1QRC A;  1EE6 A;  2O0W A;  1KTW A;  3B4N A;  3GQ8 A;  3VSU A;  3ZSC A;  1H80 A;  1DBO A;  1O8G A;  4I84 A;  2X85 A;  2B0R A;  2J8I A;  1NHC A;  5JLV C;  2NTQ A;  2QYU A;  1PLU A;  3NAW A;  1JTA A;  2XTY A;  2J8K A;  2BM6 A;  1CLW A;  2W7Z A;  3EQN A;  3UW0 A;  4C2L A;  4XLA A;  4OJO A;  2XT2 A;  1GQ8 A;  4EW9 A;  2NZM A;  4XLC A;  2XC1 A;  4HWV A;  1HF2 A;  1LLW A;  1KQ5 A;  1O8M A;  3KRG A;  4NK6 A;  4U4B A;  2ODL A;  3FY3 A;  3GRH A;  4OJL A;  1VBL A;  4XOR A;  4Z03 A;  3VMW A;  2X6X A;  2O17 A;  4V02 C;  1PE9 A;  4W8R A;  1OFE A;  1HG8 A;  1EA0 A;  3T9G A;  1O8D A;  2INV A;  4YEI A;  2XTX A;  4YZX A;  3RIQ A;  2QZA A;  3PSS A;  1WMR A;  2IOU G;  1DBG A;  1PXZ A;  3JUR A;  4XOT A;  1O8J A;  3SQV A;  1TYW A;  4NK8 A;  1QA2 A;  3P4G A;  3SY2 A;  4XR6 A;  1IB4 A;  1RMG A;  1TYU A;  1K8F A;  1L1I A;  1QA3 A;  1CZF A;  4Z05 A;  3VST A;  2Z8G A;  3SYJ A;  4OZZ A;  4XMY A;  4XOP A;  2QY1 A;  2V5I A;  1O8L A;  5AMV A;  2NTB A;  2UVE A;  3LJY A;  3ZPP A;  3SZE A;  3JX8 A;  2UVF A;  4U49 A;  1O8F A;  2BX6 A;  2BM4 A;  2VFN A;  2O0V A;  3GQ7 A;  4Z06 A;  1OOC A;  1DAB A;  3NB2 A;  2X6W A;  2NST A;  2VFM A;  2BSP A;  2XTW A;  1O88 A;  2O04 A;  3ML3 A;  1QCX A;  3EQO A;  1OFM A;  1QJV A;  4OM9 A;  4JRA C;  4XON A;  1IDK A;  3GQA A;  4XLF A;  2X3H A;  4YZA A;  5C1C A;  3B90 A;  3LMW A;  5JMC B;  4YZQ A;  3N90 A;  4XQF A;  4OPW A;  3LYC A;  4PMH A;  1OGM X;  4MR0 A;  4OJ6 A;  4XN0 A;  4YFO A;  4YDT A;  2EWE A;  4W8Q A;  1K4Z A;  1LM1 A;  4W8T A;  4URR A;  2VBE A;  3N6Z A;  4XLH A;  1RU4 A;  2QXZ A;  1QA1 A;  1KCC A;  4OZY A;  1O8I A;  2NT6 A;  4W8S A;  2PYG A;  2BM7 A;  1LLZ A;  4MXN A;  1TYX A;  2NTP A;  1TYV A;  3VSV A;  2VBK A;  4XM3 A;  4YEJ A;  2QX3 A;  1OGO X;  2F3L A;  2VFO A;  2VFP A;  5C1E A;  2YUH A;  4YC5 A;  1XG2 A;  4XNF A;  3VMV A;  4AVZ A;  4YZ0 A;  1WXR A;  2IQ7 A;  1BN8 A;  2BM5 A;  3BH7 B;  3PSZ A;  4XL9 A;  2PYH A;  3AK5 A;  1AIR A;  1RWR A;  2O6W A;  2VFQ A;  4XKV A;  3GQ9 A;  3WWG A;  1IA5 A;  2VJI A;  1OFD A;  2NT9 A;  2INU A;  2PEC A;  2XT4 A;  3B8Y A;  3DU1 X;  1O8K A;  4XKW A;  4XLE A;  1EZG A;  3PET A; 
#chains in the Genus database with same CATH homology
 3LJY A;  2G0Y A;  2XC1 A;  1HF2 A;  2BM7 A;  1KQ5 A;  1TYX A;  3TH0 A;  1TYV A;  3SZE A;  4OJ5 A;  4KH3 A;  1QRB A;  1TSP A;  3JX8 A;  2VFO A;  2VFP A;  2F3L A;  4OJL A;  1QQ1 A;  3BH6 B;  4V02 C;  2YUH A;  2BX6 A;  2BM4 A;  2VFN A;  1DAB A;  1WXR A;  3H09 A;  4OJP A;  1QRC A;  2VFM A;  2BM5 A;  3BH7 B;  3RIQ A;  3ML3 A;  2IOU G;  3AK5 A;  4OM9 A;  2B0R A;  2J8I A;  2VFQ A;  4JRA C;  1TYW A;  5JLV C;  1QA2 A;  3P4G A;  5JMC B;  3N90 A;  4OPW A;  3LYC A;  1TYU A;  1K8F A;  4OJ6 A;  2BM6 A;  1CLW A;  2W7Z A;  1QA3 A;  1K4Z A;  3N6Z A;  3SYJ A;  4OJO A;  1QA1 A;  2V5I A;  3PET A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...