2VFPA

Low temperature structure of p22 tailspike protein fragment (109-666), mutant v349l
Total Genus 208
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
208
sequence length
556
structure length
556
Chain Sequence
DQYSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGLIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords P22 TAILSPIKE PROTEIN
publication title Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein
rcsb
source organism Enterobacteria phage p22
molecule tags Hydrolase
total genus 208
structure length 556
sequence length 556
ec nomenclature ec 3.2.1.-:
pdb deposition date 2007-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2vfpA00
2VFMA 2XC1A 2IOUG 1TYWA 1QRBA 1QQ1A 2VFOA 3H09A 2VFNA 4KH3A 3AK5A 2VFPA 3TH0A 1DABA 2VFQA 1QRCA 1TYVA 1WXRA 1TSPA 3SZEA 3RIQA 1QA1A 1TYUA 1QA2A 1CLWA 4OM9A 3ML3A 3SYJA 2V5IA 1TYXA 1QA3A
chains in the Genus database with same CATH superfamily
4YEJA 2XTXA 2IQ7A 3GQ9A 2VFMA 2J8KA 4URRA 3VMWA 1WMRA 4XM3A 2XC1A 1KCDA 1PXZA 2PYHA 2QY1A 3SQVA 1QRBA 1HF2A 1QQ1A 1GQ8A 1O88A 3ZPPA 1OOCA 4JRAC 1NHCA 2XT2A 2VBKA 4XN3A 3AK5A 1O8JA 1H80A 2VBEA 4OZZA 1PE9A 3N6ZA 1O8DA 4OZYA 2XT4A 3EQOA 2O0VA 3SZEA 2UVEA 3VSVA 2BM5A 1O8GA 4HWVA 4OJ5A 1OFDA 2INUA 4YEIA 3PSZA 1KCCA 3NB2A 2ODLA 3JX8A 4YZAA 3JURA 3VSUA 3GQAA 2G0YA 2X85A 4YDTA 5C1CA 4W8TA 1X0CA 1CZFA 2YUHA 2X6XA 2Z8GA 1O8IA 4XOTA 2X6WA 1OFMA 2VJIA 2O17A 2O04A 1TYWA 2VBMA 1IDJA 1HG8A 4OJ6A 4XLAA 1LLWA 2NSPA 2NT9A 2UVFA 1O8EA 3H09A 4MXNA 4U4BA 4Z05A 2NTQA 4KH3A 2BM6A 1KQ5A 2XTYA 1DBGA 2VFPA 3TH0A 4XOPA 4XR6A 4YC5A 1OGMX 4OJPA 2QZAA 2O6WA 1TYVA 1AIRA 4OPWA 1WXRA 3SY2A 1JTAA 2NT6A 4U49A 2F3LA 4XQFA 1QA1A 4XLFA 4XKVA 2NTPA 4XONA 1O8LA 4YELA 5AMVA 1CLWA 2QXZA 3T9GA 1RWRA 2X3HA 3ML3A 2V5IA 4OM9A 4Z06A 3SUCA 4AVZA 4YZ0A 2X6YA 1XG2A 4XNFA 2W7ZA 4NK6A 1O8HA 2NTBA 5JMCB 1IDKA 2NZMA 1BN8A 4XL9A 5JLVC 4V02C 2VFOA 2INVA 4XORA 1OFLA 4MR0A 1QCXA 3LJYA 1EE6A 1DABA 1TSPA 4YFOA 3N90A 2QX3A 3PETA 5C1EA 4PMHA 2BX6A 4XMYA 1TYUA 2BM4A 1LM1A 4NK8A 1RMGA 3B4NA 4XLCA 4YCQA 2PECA 4I84A 3P4GA 3WWGA 4XKWA 3SYJA 4XLEA 5DNSA 4OJLA 1QJVA 4C2LA 2BM7A 1TYXA 4XLHA 1O8MA 1QA3A 2EWEA 4Z03A 3GQ7A 1K5CA 2PYGA 2O0WA 4YZQA 3NAWA 3PSSA 2IOUG 2J8IA 4W8SA 1PLUA 1LLZA 2O1DA 2QYUA 3GQ8A 1DBOA 1IA5A 3VMVA 2VFNA 4W8RA 1EZGA 2XTWA 3BH6B 1JRGA 3B90A 1O8KA 4EW9A 3EQNA 2VFQA 1QRCA 4XN0A 2VJJA 3ZSCA 1L1IA 1KTWA 4W8QA 1OGOX 3RIQA 1OFEA 3DU1X 3B8YA 3LYCA 3UW0A 1K8FA 3BH7B 2NSTA 3GRHA 1VBLA 3KRGA 4OJOA 4YZXA 1O8FA 1QA2A 1EA0A 1IB4A 3LMWA 1K4ZA 1BHEA 1RU4A 2BSPA 3FY3A 2B0RA 3VSTA
chains in the Genus database with same CATH topology
2W7ZA 2VFMA 2XC1A 5JMCB 2IOUG 1TYWA 2J8IA 1QRBA 1HF2A 1QQ1A 4OJ6A 5JLVC 4V02C 2VFOA 3H09A 4JRAC 2VFNA 3BH6B 4KH3A 2BM6A 3AK5A 1KQ5A 2VFPA 3LJYA 3N6ZA 3TH0A 1DABA 2VFQA 1QRCA 4OJPA 1TYVA 4OPWA 1TSPA 3SZEA 1WXRA 3RIQA 2F3LA 3N90A 2BM5A 3PETA 1QA1A 2BX6A 2BM7A 4OJ5A 1TYUA 2BM4A 1K8FA 3BH7B 3LYCA 4OJOA 1CLWA 1QA2A 3JX8A 3P4GA 4OM9A 3ML3A 3SYJA 2V5IA 1K4ZA 4OJLA 2G0YA 1TYXA 1QA3A 2B0RA 2YUHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VFM A;  2XC1 A;  2IOU G;  1TYW A;  1QRB A;  1QQ1 A;  2VFO A;  3H09 A;  2VFN A;  4KH3 A;  3AK5 A;  2VFP A;  3TH0 A;  1DAB A;  2VFQ A;  1QRC A;  1TYV A;  1WXR A;  1TSP A;  3SZE A;  3RIQ A;  1QA1 A;  1TYU A;  1QA2 A;  1CLW A;  4OM9 A;  3ML3 A;  3SYJ A;  2V5I A;  1TYX A;  1QA3 A; 
#chains in the Genus database with same CATH topology
 4YEJ A;  2XTX A;  2IQ7 A;  3GQ9 A;  2VFM A;  2J8K A;  4URR A;  3VMW A;  1WMR A;  4XM3 A;  2XC1 A;  1KCD A;  1PXZ A;  2PYH A;  2QY1 A;  3SQV A;  1QRB A;  1HF2 A;  1QQ1 A;  1GQ8 A;  1O88 A;  3ZPP A;  1OOC A;  4JRA C;  1NHC A;  2XT2 A;  2VBK A;  4XN3 A;  3AK5 A;  1O8J A;  1H80 A;  2VBE A;  4OZZ A;  1PE9 A;  3N6Z A;  1O8D A;  4OZY A;  2XT4 A;  3EQO A;  2O0V A;  3SZE A;  2UVE A;  3VSV A;  2BM5 A;  1O8G A;  4HWV A;  4OJ5 A;  1OFD A;  2INU A;  4YEI A;  3PSZ A;  1KCC A;  3NB2 A;  2ODL A;  3JX8 A;  4YZA A;  3JUR A;  3VSU A;  3GQA A;  2G0Y A;  2X85 A;  4YDT A;  5C1C A;  4W8T A;  1X0C A;  1CZF A;  2YUH A;  2X6X A;  2Z8G A;  1O8I A;  4XOT A;  2X6W A;  1OFM A;  2VJI A;  2O17 A;  2O04 A;  1TYW A;  2VBM A;  1IDJ A;  1HG8 A;  4OJ6 A;  4XLA A;  1LLW A;  2NSP A;  2NT9 A;  2UVF A;  1O8E A;  3H09 A;  4MXN A;  4U4B A;  4Z05 A;  2NTQ A;  4KH3 A;  2BM6 A;  1KQ5 A;  2XTY A;  1DBG A;  2VFP A;  3TH0 A;  4XOP A;  4XR6 A;  4YC5 A;  1OGM X;  4OJP A;  2QZA A;  2O6W A;  1TYV A;  1AIR A;  4OPW A;  1WXR A;  3SY2 A;  1JTA A;  2NT6 A;  4U49 A;  2F3L A;  4XQF A;  1QA1 A;  4XLF A;  4XKV A;  2NTP A;  4XON A;  1O8L A;  4YEL A;  5AMV A;  1CLW A;  2QXZ A;  3T9G A;  1RWR A;  2X3H A;  3ML3 A;  2V5I A;  4OM9 A;  4Z06 A;  3SUC A;  4AVZ A;  4YZ0 A;  2X6Y A;  1XG2 A;  4XNF A;  2W7Z A;  4NK6 A;  1O8H A;  2NTB A;  5JMC B;  1IDK A;  2NZM A;  1BN8 A;  4XL9 A;  5JLV C;  4V02 C;  2VFO A;  2INV A;  4XOR A;  1OFL A;  4MR0 A;  1QCX A;  3LJY A;  1EE6 A;  1DAB A;  1TSP A;  4YFO A;  3N90 A;  2QX3 A;  3PET A;  5C1E A;  4PMH A;  2BX6 A;  4XMY A;  1TYU A;  2BM4 A;  1LM1 A;  4NK8 A;  1RMG A;  3B4N A;  4XLC A;  4YCQ A;  2PEC A;  4I84 A;  3P4G A;  3WWG A;  4XKW A;  3SYJ A;  4XLE A;  5DNS A;  4OJL A;  1QJV A;  4C2L A;  2BM7 A;  1TYX A;  4XLH A;  1O8M A;  1QA3 A;  2EWE A;  4Z03 A;  3GQ7 A;  1K5C A;  2PYG A;  2O0W A;  4YZQ A;  3NAW A;  3PSS A;  2IOU G;  2J8I A;  4W8S A;  1PLU A;  1LLZ A;  2O1D A;  2QYU A;  3GQ8 A;  1DBO A;  1IA5 A;  3VMV A;  2VFN A;  4W8R A;  1EZG A;  2XTW A;  3BH6 B;  1JRG A;  3B90 A;  1O8K A;  4EW9 A;  3EQN A;  2VFQ A;  1QRC A;  4XN0 A;  2VJJ A;  3ZSC A;  1L1I A;  1KTW A;  4W8Q A;  1OGO X;  3RIQ A;  1OFE A;  3DU1 X;  3B8Y A;  3LYC A;  3UW0 A;  1K8F A;  3BH7 B;  2NST A;  3GRH A;  1VBL A;  3KRG A;  4OJO A;  4YZX A;  1O8F A;  1QA2 A;  1EA0 A;  1IB4 A;  3LMW A;  1K4Z A;  1BHE A;  1RU4 A;  2BSP A;  3FY3 A;  2B0R A;  3VST A; 
#chains in the Genus database with same CATH homology
 2W7Z A;  2VFM A;  2XC1 A;  5JMC B;  2IOU G;  1TYW A;  2J8I A;  1QRB A;  1HF2 A;  1QQ1 A;  4OJ6 A;  5JLV C;  4V02 C;  2VFO A;  3H09 A;  4JRA C;  2VFN A;  3BH6 B;  4KH3 A;  2BM6 A;  3AK5 A;  1KQ5 A;  2VFP A;  3LJY A;  3N6Z A;  3TH0 A;  1DAB A;  2VFQ A;  1QRC A;  4OJP A;  1TYV A;  4OPW A;  1TSP A;  3SZE A;  1WXR A;  3RIQ A;  2F3L A;  3N90 A;  2BM5 A;  3PET A;  1QA1 A;  2BX6 A;  2BM7 A;  4OJ5 A;  1TYU A;  2BM4 A;  1K8F A;  3BH7 B;  3LYC A;  4OJO A;  1CLW A;  1QA2 A;  3JX8 A;  3P4G A;  4OM9 A;  3ML3 A;  3SYJ A;  2V5I A;  1K4Z A;  4OJL A;  2G0Y A;  1TYX A;  1QA3 A;  2B0R A;  2YUH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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