2VFPA

Low temperature structure of p22 tailspike protein fragment (109-666), mutant v349l
Total Genus 208
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
208
sequence length
556
structure length
556
Chain Sequence
b'DQYSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGLIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords P22 TAILSPIKE PROTEIN
publication title Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein
rcsb
source organism Enterobacteria phage p22
molecule tags Hydrolase
total genus 208
structure length 556
sequence length 556
ec nomenclature ec 3.2.1.-:
pdb deposition date 2007-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2vfpA00
3ML3A 1TYUA 1QRBA 2VFNA 1DABA 1TSPA 3SYJA 2VFQA 1WXRA 3H09A 1TYXA 1QRCA 1QQ1A 4KH3A 1TYVA 2V5IA 3SZEA 2VFOA 3AK5A 2VFPA 1QA1A 4OM9A 3RIQA 2IOUG 1QA3A 1QA2A 3TH0A 2VFMA 1TYWA 2XC1A 1CLWA
chains in the Genus database with same CATH superfamily
4XNFA 3JURA 4NK8A 1QRBA 1K5CA 1AIRA 4YCQA 3DU1X 1KCCA 4XQFA 3SYJA 1WXRA 1QJVA 2NTQA 3LYCA 3NB2A 1TYXA 3SY2A 3PETA 4YZXA 3EQNA 5JMCB 4YDTA 2VFOA 1PLUA 2UVFA 1O8DA 1JRGA 2VFPA 4W8QA 4YFOA 1RMGA 2O04A 2XT2A 4OM9A 2INUA 1HF2A 1DBGA 1EE6A 2IOUG 1OFEA 1O88A 1VBLA 3BH7B 4JRAC 4XN0A 3NAWA 3B8YA 4YELA 1WMRA 2VJJA 1PE9A 1O8LA 1TYWA 4AVZA 1O8MA 2INVA 2BM4A 3VSUA 2X6YA 2O0VA 2VJIA 2VFNA 1DABA 3VMWA 2BSPA 1K8FA 2EWEA 2NT9A 2B0RA 3LJYA 1RU4A 1OGMX 1QQ1A 4XKVA 4V02C 1O8GA 1TYVA 3GRHA 4Z05A 1IB4A 2ODLA 3GQ8A 4U4BA 2X6XA 4XR6A 1QA1A 2O0WA 1OOCA 2NSTA 3EQOA 3BH6B 1IDJA 4XL9A 3GQ7A 3FY3A 5C1CA 1JTAA 1QA3A 2BM7A 1O8EA 4OJ6A 4NK6A 3GQAA 1QA2A 2VFMA 1RWRA 4XOTA 2QY1A 4YEIA 2BM5A 1LM1A 2XC1A 2X6WA 1LLZA 1BN8A 1OFLA 4W8TA 5AMVA 1KTWA 1BHEA 1OFMA 2G0YA 2O6WA 1LLWA 1TYUA 3ML3A 4C2LA 1KQ5A 1TSPA 1KCDA 1O8IA 1OFDA 2NT6A 2NZMA 2PYHA 4OJ5A 3LMWA 3JX8A 3T9GA 2Z8GA 4OJPA 1GQ8A 4XONA 4YZQA 1QRCA 2NTBA 4KH3A 4XLAA 3ZPPA 3VMVA 2V5IA 2VBEA 4URRA 3PSZA 4Z06A 5C1EA 1O8FA 3AK5A 1PXZA 3UW0A 3VSTA 2VBMA 3SQVA 2J8KA 4OPWA 3RIQA 4YZAA 4MR0A 3B4NA 4MXNA 1HG8A 2XTYA 4OJLA 4Z03A 3KRGA 4W8RA 2X85A 2NTPA 1QCXA 4XN3A 3TH0A 2IQ7A 1O8HA 2QX3A 2QYUA 2YUHA 2XT4A 1EA0A 4YEJA 2O17A 4XMYA 1XG2A 1IA5A 4XORA 2NSPA 2BX6A 2O1DA 3WWGA 3P4GA 2UVEA 3N6ZA 5JLVC 4U49A 3B90A 4XM3A 2VFQA 3SUCA 1DBOA 2QZAA 2PECA 3H09A 4W8SA 2QXZA 1K4ZA 1OGOX 1O8KA 1L1IA 3ZSCA 2PYGA 3N90A 4XOPA 3SZEA 2W7ZA 3GQ9A 2VBKA 1H80A 1X0CA 4YZ0A 2X3HA 4I84A 1CZFA 3VSVA 1EZGA 2XTXA 4EW9A 4HWVA 4XLFA 1IDKA 4XLHA 4OZZA 5DNSA 1O8JA 2XTWA 2F3LA 4OZYA 4YC5A 4XLEA 4XKWA 4XLCA 4OJOA 2BM6A 4PMHA 2J8IA 1NHCA 1CLWA 3PSSA
chains in the Genus database with same CATH topology
2BX6A 2G0YA 2BM4A 3ML3A 1TYUA 3P4GA 1QRBA 3N6ZA 1KQ5A 2VFNA 1DABA 1K8FA 1TSPA 5JLVC 3SYJA 2VFQA 2B0RA 3LJYA 4OJ5A 1WXRA 3H09A 3JX8A 3LYCA 1K4ZA 1TYXA 3PETA 4OJPA 1QQ1A 1QRCA 3N90A 1TYVA 4KH3A 4V02C 2V5IA 3SZEA 2VFOA 5JMCB 2W7ZA 2VFPA 3AK5A 1QA1A 4OM9A 4OPWA 3RIQA 1HF2A 3BH6B 2IOUG 4JRAC 4OJLA 3BH7B 1QA3A 2BM7A 4OJ6A 1QA2A 3TH0A 2VFMA 2YUHA 2F3LA 1TYWA 2BM5A 2BM6A 4OJOA 2XC1A 2J8IA 1CLWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ML3 A;  1TYU A;  1QRB A;  2VFN A;  1DAB A;  1TSP A;  3SYJ A;  2VFQ A;  1WXR A;  3H09 A;  1TYX A;  1QRC A;  1QQ1 A;  4KH3 A;  1TYV A;  2V5I A;  3SZE A;  2VFO A;  3AK5 A;  2VFP A;  1QA1 A;  4OM9 A;  3RIQ A;  2IOU G;  1QA3 A;  1QA2 A;  3TH0 A;  2VFM A;  1TYW A;  2XC1 A;  1CLW A; 
#chains in the Genus database with same CATH topology
 4XNF A;  3JUR A;  4NK8 A;  1QRB A;  1K5C A;  1AIR A;  4YCQ A;  3DU1 X;  1KCC A;  4XQF A;  3SYJ A;  1WXR A;  1QJV A;  2NTQ A;  3LYC A;  3NB2 A;  1TYX A;  3SY2 A;  3PET A;  4YZX A;  3EQN A;  5JMC B;  4YDT A;  2VFO A;  1PLU A;  2UVF A;  1O8D A;  1JRG A;  2VFP A;  4W8Q A;  4YFO A;  1RMG A;  2O04 A;  2XT2 A;  4OM9 A;  2INU A;  1HF2 A;  1DBG A;  1EE6 A;  2IOU G;  1OFE A;  1O88 A;  1VBL A;  3BH7 B;  4JRA C;  4XN0 A;  3NAW A;  3B8Y A;  4YEL A;  1WMR A;  2VJJ A;  1PE9 A;  1O8L A;  1TYW A;  4AVZ A;  1O8M A;  2INV A;  2BM4 A;  3VSU A;  2X6Y A;  2O0V A;  2VJI A;  2VFN A;  1DAB A;  3VMW A;  2BSP A;  1K8F A;  2EWE A;  2NT9 A;  2B0R A;  3LJY A;  1RU4 A;  1OGM X;  1QQ1 A;  4XKV A;  4V02 C;  1O8G A;  1TYV A;  3GRH A;  4Z05 A;  1IB4 A;  2ODL A;  3GQ8 A;  4U4B A;  2X6X A;  4XR6 A;  1QA1 A;  2O0W A;  1OOC A;  2NST A;  3EQO A;  3BH6 B;  1IDJ A;  4XL9 A;  3GQ7 A;  3FY3 A;  5C1C A;  1JTA A;  1QA3 A;  2BM7 A;  1O8E A;  4OJ6 A;  4NK6 A;  3GQA A;  1QA2 A;  2VFM A;  1RWR A;  4XOT A;  2QY1 A;  4YEI A;  2BM5 A;  1LM1 A;  2XC1 A;  2X6W A;  1LLZ A;  1BN8 A;  1OFL A;  4W8T A;  5AMV A;  1KTW A;  1BHE A;  1OFM A;  2G0Y A;  2O6W A;  1LLW A;  1TYU A;  3ML3 A;  4C2L A;  1KQ5 A;  1TSP A;  1KCD A;  1O8I A;  1OFD A;  2NT6 A;  2NZM A;  2PYH A;  4OJ5 A;  3LMW A;  3JX8 A;  3T9G A;  2Z8G A;  4OJP A;  1GQ8 A;  4XON A;  4YZQ A;  1QRC A;  2NTB A;  4KH3 A;  4XLA A;  3ZPP A;  3VMV A;  2V5I A;  2VBE A;  4URR A;  3PSZ A;  4Z06 A;  5C1E A;  1O8F A;  3AK5 A;  1PXZ A;  3UW0 A;  3VST A;  2VBM A;  3SQV A;  2J8K A;  4OPW A;  3RIQ A;  4YZA A;  4MR0 A;  3B4N A;  4MXN A;  1HG8 A;  2XTY A;  4OJL A;  4Z03 A;  3KRG A;  4W8R A;  2X85 A;  2NTP A;  1QCX A;  4XN3 A;  3TH0 A;  2IQ7 A;  1O8H A;  2QX3 A;  2QYU A;  2YUH A;  2XT4 A;  1EA0 A;  4YEJ A;  2O17 A;  4XMY A;  1XG2 A;  1IA5 A;  4XOR A;  2NSP A;  2BX6 A;  2O1D A;  3WWG A;  3P4G A;  2UVE A;  3N6Z A;  5JLV C;  4U49 A;  3B90 A;  4XM3 A;  2VFQ A;  3SUC A;  1DBO A;  2QZA A;  2PEC A;  3H09 A;  4W8S A;  2QXZ A;  1K4Z A;  1OGO X;  1O8K A;  1L1I A;  3ZSC A;  2PYG A;  3N90 A;  4XOP A;  3SZE A;  2W7Z A;  3GQ9 A;  2VBK A;  1H80 A;  1X0C A;  4YZ0 A;  2X3H A;  4I84 A;  1CZF A;  3VSV A;  1EZG A;  2XTX A;  4EW9 A;  4HWV A;  4XLF A;  1IDK A;  4XLH A;  4OZZ A;  5DNS A;  1O8J A;  2XTW A;  2F3L A;  4OZY A;  4YC5 A;  4XLE A;  4XKW A;  4XLC A;  4OJO A;  2BM6 A;  4PMH A;  2J8I A;  1NHC A;  1CLW A;  3PSS A; 
#chains in the Genus database with same CATH homology
 2BX6 A;  2G0Y A;  2BM4 A;  3ML3 A;  1TYU A;  3P4G A;  1QRB A;  3N6Z A;  1KQ5 A;  2VFN A;  1DAB A;  1K8F A;  1TSP A;  5JLV C;  3SYJ A;  2VFQ A;  2B0R A;  3LJY A;  4OJ5 A;  1WXR A;  3H09 A;  3JX8 A;  3LYC A;  1K4Z A;  1TYX A;  3PET A;  4OJP A;  1QQ1 A;  1QRC A;  3N90 A;  1TYV A;  4KH3 A;  4V02 C;  2V5I A;  3SZE A;  2VFO A;  5JMC B;  2W7Z A;  2VFP A;  3AK5 A;  1QA1 A;  4OM9 A;  4OPW A;  3RIQ A;  1HF2 A;  3BH6 B;  2IOU G;  4JRA C;  4OJL A;  3BH7 B;  1QA3 A;  2BM7 A;  4OJ6 A;  1QA2 A;  3TH0 A;  2VFM A;  2YUH A;  2F3L A;  1TYW A;  2BM5 A;  2BM6 A;  4OJO A;  2XC1 A;  2J8I A;  1CLW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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