4NK8A

Crystal structure of the periplasmic alginate epimerase algg d317a mutant
Total Genus 166
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
166
sequence length
424
structure length
417
Chain Sequence
EMAKPVLPDLSGYTTEAALKKIARNKPGKITVARMMEETGLEFIGGDNKMAEWVVRQKGIPQAIMISDGYVNLQDLVKKVPKQFLSEVSPGVYVARLPILVKETGIFEIDSKTKELRLSQEGSFIVSEGKMLITNTSVNAWSETRNGLAAYRTPDEFRPFVLTWGGSQTWIATKMASMGYNQSSYGVSISQYTPNTAKVLKRGEPTGWIIDSEFADMWYGFYCYETRDFVVGNTYRDNIVYGIAPHDRSHGLIIAENDVYGTKKHGIIISREVDNSFIFRNSHNNKLSGVVLDRNSVGNIVAYNEIYQNHTDGITLYESGNNLLWGNRVIANRRHGIRVRNSVNIKLYENVAMANGLMGVYGHIKDLNDTDRDIELDPFDAQVSLIMVGGELSSNGSGPLSIDSPLSVELYRVSMLM
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Isomerase
source organism Pseudomonas syringae pv. tomato
publication title Catalytic Mechanism and Mode of Action of the Periplasmic Alginate Epimerase AlgG.
pubmed doi rcsb
molecule keywords Poly(beta-D-mannuronate) C5 epimerase
total genus 166
structure length 417
sequence length 424
ec nomenclature ec 5.1.3.37: Mannuronan 5-epimerase.
pdb deposition date 2013-11-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13229 Beta_helix Right handed beta helix region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4nk8A00
2X6YA 2NZMA 4XOTA 1O8LA 1CZFA 1IDJA 3FY3A 2X85A 4OZYA 2X6WA 4YZAA 2PYHA 3B8YA 2INUA 3GQAA 4XLCA 1O8HA 1HG8A 4Z06A 2VJJA 2NT9A 1GQ8A 1JRGA 1RWRA 2QY1A 1OGOX 2NTBA 2QXZA 2IQ7A 2ODLA 4I84A 2EWEA 2UVFA 3B4NA 3EQOA 4PMHA 4C2LA 3EQNA 3JURA 3UW0A 2QX3A 1KCCA 1KCDA 4XORA 1JTAA 4OJ5A 1OGMX 2Z8GA 4XONA 4XLHA 4XOPA 4XLFA 1KTWA 2VBMA 3T9GA 3SUCA 1O88A 3GQ9A 4XL9A 4W8SA 4OZZA 5C1EA 3KRGA 4XKWA 1BN8A 1O8FA 2O17A 4MR0A 4OJLA 4XLAA 2VBEA 4Z05A 1XG2A 1O8JA 2NTQA 2O04A 1O8DA 2NSPA 4XR6A 2NT6A 4XLEA 2PECA 4YZQA 4W8TA 2NTPA 4YZXA 2NSTA 4AVZA 2PYGA 1VBLA 2VJIA 1DBOA 1O8IA 1PXZA 1K5CA 1O8KA 2X3HA 1X0CA 4NK6A 1WMRA 2VBKA 2BSPA 4XM3A 4XNFA 2O0VA 4XMYA 1QCXA 4Z03A 4URRA 4XN0A 4HWVA 1OFMA 4MXNA 3GQ8A 4XQFA 1O8EA 4U4BA 3LMWA 4YZ0A 3ZPPA 1IB4A 4OJPA 3WWGA 2X6XA 4YEJA 5C1CA 3GRHA 1RMGA 4W8QA 5AMVA 4EW9A 1PLUA 2UVEA 4XKVA 1DBGA 3GQ7A 3VSUA 1BHEA 4W8RA 1RU4A 1OOCA 1O8GA 1NHCA 2INVA 4OJOA 4YELA 3VMVA 3VSVA 3VMWA 4XN3A 1OFLA 3ZSCA 1PE9A 2O1DA 4NK8A 3VSTA 4OJ6A 1EE6A 1IDKA 1O8MA 3B90A 4U49A 2O0WA 1IA5A 1H80A 1QJVA 1AIRA
chains in the Genus database with same CATH superfamily
1EZGA 2VFOA 2NZMA 1QRCA 2X6YA 4XOTA 1O8LA 1QA3A 4OPWA 4YEIA 1TSPA 1CZFA 2VFNA 1IDJA 3FY3A 2X85A 4OZYA 2X6WA 4YZAA 2XTYA 2PYHA 3B8YA 2INUA 3GQAA 4YCQA 1L1IA 4XLCA 3JX8A 1O8HA 1HG8A 4Z06A 2O6WA 2VJJA 2NT9A 1OFEA 1GQ8A 1EA0A 1JRGA 1RWRA 2NTBA 1OGOX 2QXZA 2QY1A 2IOUG 2IQ7A 5DNSA 2ODLA 2W7ZA 4I84A 2EWEA 2UVFA 3B4NA 3EQOA 4PMHA 4C2LA 1TYXA 3EQNA 3JURA 3N90A 3UW0A 2QX3A 2XT4A 3H09A 1KCCA 1KCDA 4XORA 2G0YA 1JTAA 2QYUA 4OJ5A 1OGMX 2Z8GA 4OM9A 4XONA 1HF2A 2J8KA 4XLHA 4XLFA 4XOPA 1QRBA 1KTWA 2VBMA 3T9GA 3SUCA 1O88A 1TYVA 3GQ9A 4XL9A 2VFPA 4W8SA 3AK5A 4OZZA 3RIQA 1LLZA 5C1EA 2BM7A 3KRGA 1TYWA 4XKWA 1BN8A 1O8FA 2O17A 3SY2A 1QA2A 3ML3A 4MR0A 4OJLA 4XLAA 2VBEA 4Z05A 1WXRA 1XG2A 2VFQA 1O8JA 2NTQA 2O04A 1O8DA 2V5IA 3LJYA 2NSPA 3TH0A 4XR6A 2NT6A 4XLEA 2PECA 1LLWA 4W8TA 2NTPA 4YZQA 2NSTA 4YZXA 4AVZA 2PYGA 3NAWA 3BH7B 1VBLA 2QZAA 2VJIA 1DBOA 1K8FA 1O8IA 1PXZA 1K5CA 1LM1A 2XTXA 1O8KA 3LYCA 2X3HA 1X0CA 4NK6A 1WMRA 2BM5A 3BH6B 2VBKA 1KQ5A 2BSPA 3SQVA 3SYJA 4XM3A 4XNFA 5JMCB 2O0VA 2XC1A 3DU1X 4XMYA 1OFDA 1DABA 1QCXA 4Z03A 4URRA 4XN0A 4HWVA 1OFMA 4MXNA 3GQ8A 4XQFA 1O8EA 4KH3A 1TYUA 4U4BA 3LMWA 3PSSA 4YZ0A 3ZPPA 1IB4A 1QQ1A 2BM6A 4OJPA 2YUHA 3WWGA 2X6XA 2B0RA 4YEJA 5C1CA 3GRHA 1RMGA 4W8QA 1CLWA 2F3LA 3NB2A 4YDTA 3PETA 3SZEA 5AMVA 2BM4A 4EW9A 1PLUA 2UVEA 2J8IA 1DBGA 3GQ7A 3PSZA 4XKVA 3VSUA 4YC5A 1BHEA 3P4GA 4W8RA 3N6ZA 1RU4A 1OOCA 1O8GA 4JRAC 1NHCA 2INVA 4OJOA 4YELA 3VMVA 3VSVA 3VMWA 4XN3A 1OFLA 3ZSCA 1PE9A 1K4ZA 2BX6A 2O1DA 4NK8A 3VSTA 4OJ6A 1EE6A 1IDKA 1O8MA 3B90A 4U49A 4V02C 2XTWA 2O0WA 5JLVC 1QA1A 2VFMA 2XT2A 1IA5A 4YFOA 1H80A 1QJVA 1AIRA
chains in the Genus database with same CATH topology
2X6YA 2NZMA 4XOTA 1O8LA 1CZFA 1IDJA 3FY3A 2X85A 4OZYA 2X6WA 4YZAA 2PYHA 3B8YA 2INUA 3GQAA 4XLCA 1O8HA 1HG8A 4Z06A 2VJJA 2NT9A 1GQ8A 1JRGA 1RWRA 2QY1A 1OGOX 2NTBA 2QXZA 2IQ7A 2ODLA 4I84A 2EWEA 2UVFA 3B4NA 3EQOA 4PMHA 4C2LA 3EQNA 3JURA 3UW0A 2QX3A 1KCCA 1KCDA 4XORA 1JTAA 4OJ5A 1OGMX 2Z8GA 4XONA 4XLHA 4XOPA 4XLFA 1KTWA 2VBMA 3T9GA 3SUCA 1O88A 3GQ9A 4XL9A 4W8SA 4OZZA 5C1EA 3KRGA 4XKWA 1BN8A 1O8FA 2O17A 4MR0A 4OJLA 4XLAA 2VBEA 4Z05A 1XG2A 1O8JA 2NTQA 2O04A 1O8DA 2NSPA 4XR6A 2NT6A 4XLEA 2PECA 4YZQA 4W8TA 2NTPA 4YZXA 2NSTA 4AVZA 2PYGA 1VBLA 2VJIA 1DBOA 1O8IA 1PXZA 1K5CA 1O8KA 2X3HA 1X0CA 4NK6A 1WMRA 2VBKA 2BSPA 4XM3A 4XNFA 2O0VA 4XMYA 1QCXA 4Z03A 4URRA 4XN0A 4HWVA 1OFMA 4MXNA 3GQ8A 4XQFA 1O8EA 4U4BA 3LMWA 4YZ0A 3ZPPA 1IB4A 4OJPA 3WWGA 2X6XA 4YEJA 5C1CA 3GRHA 1RMGA 4W8QA 5AMVA 4EW9A 1PLUA 2UVEA 4XKVA 1DBGA 3GQ7A 3VSUA 1BHEA 4W8RA 1RU4A 1OOCA 1O8GA 1NHCA 2INVA 4OJOA 4YELA 3VMVA 3VSVA 3VMWA 4XN3A 1OFLA 3ZSCA 1PE9A 2O1DA 4NK8A 3VSTA 4OJ6A 1EE6A 1IDKA 1O8MA 3B90A 4U49A 2O0WA 1IA5A 1H80A 1QJVA 1AIRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X6Y A;  2NZM A;  4XOT A;  1O8L A;  1CZF A;  1IDJ A;  3FY3 A;  2X85 A;  4OZY A;  2X6W A;  4YZA A;  2PYH A;  3B8Y A;  2INU A;  3GQA A;  4XLC A;  1O8H A;  1HG8 A;  4Z06 A;  2VJJ A;  2NT9 A;  1GQ8 A;  1JRG A;  1RWR A;  2QY1 A;  1OGO X;  2NTB A;  2QXZ A;  2IQ7 A;  2ODL A;  4I84 A;  2EWE A;  2UVF A;  3B4N A;  3EQO A;  4PMH A;  4C2L A;  3EQN A;  3JUR A;  3UW0 A;  2QX3 A;  1KCC A;  1KCD A;  4XOR A;  1JTA A;  4OJ5 A;  1OGM X;  2Z8G A;  4XON A;  4XLH A;  4XOP A;  4XLF A;  1KTW A;  2VBM A;  3T9G A;  3SUC A;  1O88 A;  3GQ9 A;  4XL9 A;  4W8S A;  4OZZ A;  5C1E A;  3KRG A;  4XKW A;  1BN8 A;  1O8F A;  2O17 A;  4MR0 A;  4OJL A;  4XLA A;  2VBE A;  4Z05 A;  1XG2 A;  1O8J A;  2NTQ A;  2O04 A;  1O8D A;  2NSP A;  4XR6 A;  2NT6 A;  4XLE A;  2PEC A;  4YZQ A;  4W8T A;  2NTP A;  4YZX A;  2NST A;  4AVZ A;  2PYG A;  1VBL A;  2VJI A;  1DBO A;  1O8I A;  1PXZ A;  1K5C A;  1O8K A;  2X3H A;  1X0C A;  4NK6 A;  1WMR A;  2VBK A;  2BSP A;  4XM3 A;  4XNF A;  2O0V A;  4XMY A;  1QCX A;  4Z03 A;  4URR A;  4XN0 A;  4HWV A;  1OFM A;  4MXN A;  3GQ8 A;  4XQF A;  1O8E A;  4U4B A;  3LMW A;  4YZ0 A;  3ZPP A;  1IB4 A;  4OJP A;  3WWG A;  2X6X A;  4YEJ A;  5C1C A;  3GRH A;  1RMG A;  4W8Q A;  5AMV A;  4EW9 A;  1PLU A;  2UVE A;  4XKV A;  1DBG A;  3GQ7 A;  3VSU A;  1BHE A;  4W8R A;  1RU4 A;  1OOC A;  1O8G A;  1NHC A;  2INV A;  4OJO A;  4YEL A;  3VMV A;  3VSV A;  3VMW A;  4XN3 A;  1OFL A;  3ZSC A;  1PE9 A;  2O1D A;  4NK8 A;  3VST A;  4OJ6 A;  1EE6 A;  1IDK A;  1O8M A;  3B90 A;  4U49 A;  2O0W A;  1IA5 A;  1H80 A;  1QJV A;  1AIR A; 
#chains in the Genus database with same CATH topology
 1EZG A;  2VFO A;  2NZM A;  1QRC A;  2X6Y A;  4XOT A;  1O8L A;  1QA3 A;  4OPW A;  4YEI A;  1TSP A;  1CZF A;  2VFN A;  1IDJ A;  3FY3 A;  2X85 A;  4OZY A;  2X6W A;  4YZA A;  2XTY A;  2PYH A;  3B8Y A;  2INU A;  3GQA A;  4YCQ A;  1L1I A;  4XLC A;  3JX8 A;  1O8H A;  1HG8 A;  4Z06 A;  2O6W A;  2VJJ A;  2NT9 A;  1OFE A;  1GQ8 A;  1EA0 A;  1JRG A;  1RWR A;  2NTB A;  1OGO X;  2QXZ A;  2QY1 A;  2IOU G;  2IQ7 A;  5DNS A;  2ODL A;  2W7Z A;  4I84 A;  2EWE A;  2UVF A;  3B4N A;  3EQO A;  4PMH A;  4C2L A;  1TYX A;  3EQN A;  3JUR A;  3N90 A;  3UW0 A;  2QX3 A;  2XT4 A;  3H09 A;  1KCC A;  1KCD A;  4XOR A;  2G0Y A;  1JTA A;  2QYU A;  4OJ5 A;  1OGM X;  2Z8G A;  4OM9 A;  4XON A;  1HF2 A;  2J8K A;  4XLH A;  4XLF A;  4XOP A;  1QRB A;  1KTW A;  2VBM A;  3T9G A;  3SUC A;  1O88 A;  1TYV A;  3GQ9 A;  4XL9 A;  2VFP A;  4W8S A;  3AK5 A;  4OZZ A;  3RIQ A;  1LLZ A;  5C1E A;  2BM7 A;  3KRG A;  1TYW A;  4XKW A;  1BN8 A;  1O8F A;  2O17 A;  3SY2 A;  1QA2 A;  3ML3 A;  4MR0 A;  4OJL A;  4XLA A;  2VBE A;  4Z05 A;  1WXR A;  1XG2 A;  2VFQ A;  1O8J A;  2NTQ A;  2O04 A;  1O8D A;  2V5I A;  3LJY A;  2NSP A;  3TH0 A;  4XR6 A;  2NT6 A;  4XLE A;  2PEC A;  1LLW A;  4W8T A;  2NTP A;  4YZQ A;  2NST A;  4YZX A;  4AVZ A;  2PYG A;  3NAW A;  3BH7 B;  1VBL A;  2QZA A;  2VJI A;  1DBO A;  1K8F A;  1O8I A;  1PXZ A;  1K5C A;  1LM1 A;  2XTX A;  1O8K A;  3LYC A;  2X3H A;  1X0C A;  4NK6 A;  1WMR A;  2BM5 A;  3BH6 B;  2VBK A;  1KQ5 A;  2BSP A;  3SQV A;  3SYJ A;  4XM3 A;  4XNF A;  5JMC B;  2O0V A;  2XC1 A;  3DU1 X;  4XMY A;  1OFD A;  1DAB A;  1QCX A;  4Z03 A;  4URR A;  4XN0 A;  4HWV A;  1OFM A;  4MXN A;  3GQ8 A;  4XQF A;  1O8E A;  4KH3 A;  1TYU A;  4U4B A;  3LMW A;  3PSS A;  4YZ0 A;  3ZPP A;  1IB4 A;  1QQ1 A;  2BM6 A;  4OJP A;  2YUH A;  3WWG A;  2X6X A;  2B0R A;  4YEJ A;  5C1C A;  3GRH A;  1RMG A;  4W8Q A;  1CLW A;  2F3L A;  3NB2 A;  4YDT A;  3PET A;  3SZE A;  5AMV A;  2BM4 A;  4EW9 A;  1PLU A;  2UVE A;  2J8I A;  1DBG A;  3GQ7 A;  3PSZ A;  4XKV A;  3VSU A;  4YC5 A;  1BHE A;  3P4G A;  4W8R A;  3N6Z A;  1RU4 A;  1OOC A;  1O8G A;  4JRA C;  1NHC A;  2INV A;  4OJO A;  4YEL A;  3VMV A;  3VSV A;  3VMW A;  4XN3 A;  1OFL A;  3ZSC A;  1PE9 A;  1K4Z A;  2BX6 A;  2O1D A;  4NK8 A;  3VST A;  4OJ6 A;  1EE6 A;  1IDK A;  1O8M A;  3B90 A;  4U49 A;  4V02 C;  2XTW A;  2O0W A;  5JLV C;  1QA1 A;  2VFM A;  2XT2 A;  1IA5 A;  4YFO A;  1H80 A;  1QJV A;  1AIR A; 
#chains in the Genus database with same CATH homology
 2X6Y A;  2NZM A;  4XOT A;  1O8L A;  1CZF A;  1IDJ A;  3FY3 A;  2X85 A;  4OZY A;  2X6W A;  4YZA A;  2PYH A;  3B8Y A;  2INU A;  3GQA A;  4XLC A;  1O8H A;  1HG8 A;  4Z06 A;  2VJJ A;  2NT9 A;  1GQ8 A;  1JRG A;  1RWR A;  2QY1 A;  1OGO X;  2NTB A;  2QXZ A;  2IQ7 A;  2ODL A;  4I84 A;  2EWE A;  2UVF A;  3B4N A;  3EQO A;  4PMH A;  4C2L A;  3EQN A;  3JUR A;  3UW0 A;  2QX3 A;  1KCC A;  1KCD A;  4XOR A;  1JTA A;  4OJ5 A;  1OGM X;  2Z8G A;  4XON A;  4XLH A;  4XOP A;  4XLF A;  1KTW A;  2VBM A;  3T9G A;  3SUC A;  1O88 A;  3GQ9 A;  4XL9 A;  4W8S A;  4OZZ A;  5C1E A;  3KRG A;  4XKW A;  1BN8 A;  1O8F A;  2O17 A;  4MR0 A;  4OJL A;  4XLA A;  2VBE A;  4Z05 A;  1XG2 A;  1O8J A;  2NTQ A;  2O04 A;  1O8D A;  2NSP A;  4XR6 A;  2NT6 A;  4XLE A;  2PEC A;  4YZQ A;  4W8T A;  2NTP A;  4YZX A;  2NST A;  4AVZ A;  2PYG A;  1VBL A;  2VJI A;  1DBO A;  1O8I A;  1PXZ A;  1K5C A;  1O8K A;  2X3H A;  1X0C A;  4NK6 A;  1WMR A;  2VBK A;  2BSP A;  4XM3 A;  4XNF A;  2O0V A;  4XMY A;  1QCX A;  4Z03 A;  4URR A;  4XN0 A;  4HWV A;  1OFM A;  4MXN A;  3GQ8 A;  4XQF A;  1O8E A;  4U4B A;  3LMW A;  4YZ0 A;  3ZPP A;  1IB4 A;  4OJP A;  3WWG A;  2X6X A;  4YEJ A;  5C1C A;  3GRH A;  1RMG A;  4W8Q A;  5AMV A;  4EW9 A;  1PLU A;  2UVE A;  4XKV A;  1DBG A;  3GQ7 A;  3VSU A;  1BHE A;  4W8R A;  1RU4 A;  1OOC A;  1O8G A;  1NHC A;  2INV A;  4OJO A;  4YEL A;  3VMV A;  3VSV A;  3VMW A;  4XN3 A;  1OFL A;  3ZSC A;  1PE9 A;  2O1D A;  4NK8 A;  3VST A;  4OJ6 A;  1EE6 A;  1IDK A;  1O8M A;  3B90 A;  4U49 A;  2O0W A;  1IA5 A;  1H80 A;  1QJV A;  1AIR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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