1CLWA

Tailspike protein from phage p22, v331a mutant
Total Genus 188
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
554
structure length
543
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSASSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Mutations improving the folding of phage P22 tailspike protein affect its receptor binding activity.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral protein
molecule keywords TAILSPIKE PROTEIN
total genus 188
structure length 543
sequence length 554
ec nomenclature
pdb deposition date 1999-05-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1clwA00
4OM9A 1QRCA 1TSPA 3SZEA 2VFOA 2XC1A 3TH0A 1CLWA 2VFNA 3RIQA 1QA2A 3SYJA 1QA3A 1QRBA 3AK5A 1TYUA 1QQ1A 1TYVA 2VFQA 1TYXA 2VFMA 4KH3A 2IOUG 1DABA 1TYWA 1WXRA 3ML3A 3H09A 2V5IA 2VFPA 1QA1A
chains in the Genus database with same CATH superfamily
2QYUA 1TSPA 3PETA 2XTWA 2J8KA 4XOTA 4MR0A 4XLHA 2QX3A 2VFOA 2O0VA 2XC1A 5C1CA 1O88A 3EQOA 4Z06A 1CLWA 5AMVA 2INVA 2VFNA 3GQ8A 4XKVA 1IA5A 2X6XA 1QJVA 1LM1A 1BHEA 4MXNA 4YZQA 4XQFA 3B90A 3VMVA 3SYJA 4XN3A 4XLAA 2X6YA 2PYHA 1TYUA 4U4BA 1PE9A 4OJPA 1K4ZA 3FY3A 4URRA 4U49A 2NT9A 3NAWA 4XL9A 3JX8A 2O0WA 4OZZA 4YEJA 2O04A 2VFQA 4OJLA 2XT2A 3VSUA 2IOUG 5DNSA 1EZGA 1IDJA 3ML3A 2V5IA 1O8DA 2NTBA 1QRCA 2EWEA 3GQ7A 4HWVA 2NT6A 1PXZA 4NK6A 4XONA 4Z05A 2O17A 3BH6B 3ZSCA 4C2LA 3SQVA 1DBOA 2INUA 2X6WA 3PSZA 4XM3A 4XORA 3VSTA 4XLEA 4AVZA 4XNFA 1EE6A 1OGOX 4YFOA 1QA2A 1K8FA 1OFMA 1PLUA 2VBKA 1HF2A 3GQ9A 4W8SA 4Z03A 3LJYA 3AK5A 2UVEA 1BN8A 3ZPPA 1O8LA 3LMWA 3WWGA 1EA0A 2BM7A 3EQNA 4XOPA 1OOCA 1O8JA 4OJ6A 4XLFA 4YELA 4XN0A 3KRGA 1KCCA 1RWRA 1KTWA 4OPWA 4XMYA 1JTAA 2W7ZA 3N6ZA 3UW0A 2VFMA 4KH3A 1K5CA 2PYGA 2UVFA 4XKWA 4YC5A 1DABA 2BX6A 3H09A 2XTYA 2O1DA 1RU4A 4W8TA 3B4NA 3GQAA 4YZXA 1H80A 2X85A 3SZEA 1KCDA 2BM6A 4W8QA 3TH0A 4OJOA 1O8MA 3T9GA 5JMCB 3NB2A 3RIQA 4PMHA 2BSPA 1GQ8A 4XLCA 1QA3A 2F3LA 4XR6A 2B0RA 2Z8GA 3VSVA 1JRGA 1X0CA 2QZAA 4W8RA 1IDKA 1WMRA 4YDTA 1TYVA 1TYXA 1O8HA 2NSTA 3N90A 3DU1X 3SY2A 2J8IA 2NTPA 2NZMA 2VJIA 2ODLA 4I84A 1L1IA 1LLZA 1IB4A 2NSPA 5JLVC 2VBEA 2XT4A 2VFPA 3PSSA 2XTXA 3LYCA 4OM9A 2G0YA 1NHCA 1O8FA 3VMWA 4YEIA 1O8GA 2X3HA 3BH7B 3B8YA 3GRHA 2YUHA 2IQ7A 2VJJA 1LLWA 2PECA 1HG8A 1OFDA 4EW9A 1QRBA 1XG2A 3SUCA 1CZFA 2BM5A 1OFLA 2VBMA 4NK8A 4YCQA 4OZYA 1OGMX 4YZ0A 1AIRA 4JRAC 2BM4A 1QQ1A 4V02C 1VBLA 1O8KA 2QY1A 2NTQA 1O8EA 2QXZA 5C1EA 1QCXA 1O8IA 3JURA 1RMGA 1KQ5A 1DBGA 3P4GA 4OJ5A 2O6WA 1TYWA 4YZAA 1WXRA 1OFEA 1QA1A
chains in the Genus database with same CATH topology
4OM9A 1QRCA 1TSPA 2G0YA 3PETA 3SZEA 2BM6A 2VFOA 2XC1A 3BH7B 3BH6B 4OJOA 3TH0A 5JMCB 1CLWA 2YUHA 2VFNA 3RIQA 1QA2A 1K8FA 3SYJA 1HF2A 1QA3A 1QRBA 3LJYA 3AK5A 2BM5A 2F3LA 1TYUA 2B0RA 4OJPA 1K4ZA 4JRAC 2BM4A 2BM7A 1QQ1A 3JX8A 4OJ6A 4V02C 1TYVA 1TYXA 2VFQA 3N90A 4OPWA 4OJLA 3N6ZA 1KQ5A 2J8IA 2W7ZA 2VFMA 4KH3A 2IOUG 3P4GA 4OJ5A 1DABA 1TYWA 5JLVC 2BX6A 3ML3A 3H09A 2V5IA 1WXRA 2VFPA 1QA1A 3LYCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OM9 A;  1QRC A;  1TSP A;  3SZE A;  2VFO A;  2XC1 A;  3TH0 A;  1CLW A;  2VFN A;  3RIQ A;  1QA2 A;  3SYJ A;  1QA3 A;  1QRB A;  3AK5 A;  1TYU A;  1QQ1 A;  1TYV A;  2VFQ A;  1TYX A;  2VFM A;  4KH3 A;  2IOU G;  1DAB A;  1TYW A;  1WXR A;  3ML3 A;  3H09 A;  2V5I A;  2VFP A;  1QA1 A; 
#chains in the Genus database with same CATH topology
 2QYU A;  1TSP A;  3PET A;  2XTW A;  2J8K A;  4XOT A;  4MR0 A;  4XLH A;  2QX3 A;  2VFO A;  2O0V A;  2XC1 A;  5C1C A;  1O88 A;  3EQO A;  4Z06 A;  1CLW A;  5AMV A;  2INV A;  2VFN A;  3GQ8 A;  4XKV A;  1IA5 A;  2X6X A;  1QJV A;  1LM1 A;  1BHE A;  4MXN A;  4YZQ A;  4XQF A;  3B90 A;  3VMV A;  3SYJ A;  4XN3 A;  4XLA A;  2X6Y A;  2PYH A;  1TYU A;  4U4B A;  1PE9 A;  4OJP A;  1K4Z A;  3FY3 A;  4URR A;  4U49 A;  2NT9 A;  3NAW A;  4XL9 A;  3JX8 A;  2O0W A;  4OZZ A;  4YEJ A;  2O04 A;  2VFQ A;  4OJL A;  2XT2 A;  3VSU A;  2IOU G;  5DNS A;  1EZG A;  1IDJ A;  3ML3 A;  2V5I A;  1O8D A;  2NTB A;  1QRC A;  2EWE A;  3GQ7 A;  4HWV A;  2NT6 A;  1PXZ A;  4NK6 A;  4XON A;  4Z05 A;  2O17 A;  3BH6 B;  3ZSC A;  4C2L A;  3SQV A;  1DBO A;  2INU A;  2X6W A;  3PSZ A;  4XM3 A;  4XOR A;  3VST A;  4XLE A;  4AVZ A;  4XNF A;  1EE6 A;  1OGO X;  4YFO A;  1QA2 A;  1K8F A;  1OFM A;  1PLU A;  2VBK A;  1HF2 A;  3GQ9 A;  4W8S A;  4Z03 A;  3LJY A;  3AK5 A;  2UVE A;  1BN8 A;  3ZPP A;  1O8L A;  3LMW A;  3WWG A;  1EA0 A;  2BM7 A;  3EQN A;  4XOP A;  1OOC A;  1O8J A;  4OJ6 A;  4XLF A;  4YEL A;  4XN0 A;  3KRG A;  1KCC A;  1RWR A;  1KTW A;  4OPW A;  4XMY A;  1JTA A;  2W7Z A;  3N6Z A;  3UW0 A;  2VFM A;  4KH3 A;  1K5C A;  2PYG A;  2UVF A;  4XKW A;  4YC5 A;  1DAB A;  2BX6 A;  3H09 A;  2XTY A;  2O1D A;  1RU4 A;  4W8T A;  3B4N A;  3GQA A;  4YZX A;  1H80 A;  2X85 A;  3SZE A;  1KCD A;  2BM6 A;  4W8Q A;  3TH0 A;  4OJO A;  1O8M A;  3T9G A;  5JMC B;  3NB2 A;  3RIQ A;  4PMH A;  2BSP A;  1GQ8 A;  4XLC A;  1QA3 A;  2F3L A;  4XR6 A;  2B0R A;  2Z8G A;  3VSV A;  1JRG A;  1X0C A;  2QZA A;  4W8R A;  1IDK A;  1WMR A;  4YDT A;  1TYV A;  1TYX A;  1O8H A;  2NST A;  3N90 A;  3DU1 X;  3SY2 A;  2J8I A;  2NTP A;  2NZM A;  2VJI A;  2ODL A;  4I84 A;  1L1I A;  1LLZ A;  1IB4 A;  2NSP A;  5JLV C;  2VBE A;  2XT4 A;  2VFP A;  3PSS A;  2XTX A;  3LYC A;  4OM9 A;  2G0Y A;  1NHC A;  1O8F A;  3VMW A;  4YEI A;  1O8G A;  2X3H A;  3BH7 B;  3B8Y A;  3GRH A;  2YUH A;  2IQ7 A;  2VJJ A;  1LLW A;  2PEC A;  1HG8 A;  1OFD A;  4EW9 A;  1QRB A;  1XG2 A;  3SUC A;  1CZF A;  2BM5 A;  1OFL A;  2VBM A;  4NK8 A;  4YCQ A;  4OZY A;  1OGM X;  4YZ0 A;  1AIR A;  4JRA C;  2BM4 A;  1QQ1 A;  4V02 C;  1VBL A;  1O8K A;  2QY1 A;  2NTQ A;  1O8E A;  2QXZ A;  5C1E A;  1QCX A;  1O8I A;  3JUR A;  1RMG A;  1KQ5 A;  1DBG A;  3P4G A;  4OJ5 A;  2O6W A;  1TYW A;  4YZA A;  1WXR A;  1OFE A;  1QA1 A; 
#chains in the Genus database with same CATH homology
 4OM9 A;  1QRC A;  1TSP A;  2G0Y A;  3PET A;  3SZE A;  2BM6 A;  2VFO A;  2XC1 A;  3BH7 B;  3BH6 B;  4OJO A;  3TH0 A;  5JMC B;  1CLW A;  2YUH A;  2VFN A;  3RIQ A;  1QA2 A;  1K8F A;  3SYJ A;  1HF2 A;  1QA3 A;  1QRB A;  3LJY A;  3AK5 A;  2BM5 A;  2F3L A;  1TYU A;  2B0R A;  4OJP A;  1K4Z A;  4JRA C;  2BM4 A;  2BM7 A;  1QQ1 A;  3JX8 A;  4OJ6 A;  4V02 C;  1TYV A;  1TYX A;  2VFQ A;  3N90 A;  4OPW A;  4OJL A;  3N6Z A;  1KQ5 A;  2J8I A;  2W7Z A;  2VFM A;  4KH3 A;  2IOU G;  3P4G A;  4OJ5 A;  1DAB A;  1TYW A;  5JLV C;  2BX6 A;  3ML3 A;  3H09 A;  2V5I A;  1WXR A;  2VFP A;  1QA1 A;  3LYC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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