1CLWA

Tailspike protein from phage p22, v331a mutant
Total Genus 188
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
554
structure length
543
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSASSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
molecule keywords TAILSPIKE PROTEIN
publication title Mutations improving the folding of phage P22 tailspike protein affect its receptor binding activity.
pubmed doi rcsb
source organism Enterobacteria phage p22
total genus 188
structure length 543
sequence length 554
ec nomenclature
pdb deposition date 1999-05-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1clwA00
1QQ1A 1CLWA 1TYVA 1QA1A 1TYXA 4KH3A 1QRBA 1QRCA 4OM9A 2VFNA 2VFQA 2XC1A 1QA2A 2VFPA 1TSPA 3ML3A 1TYUA 3AK5A 1WXRA 3SZEA 1TYWA 2IOUG 3TH0A 3H09A 1DABA 1QA3A 2V5IA 3SYJA 2VFMA 3RIQA 2VFOA
chains in the Genus database with same CATH superfamily
1O8MA 1QQ1A 1CLWA 2PYGA 2NTBA 4OPWA 1TYXA 2J8KA 4KH3A 4YCQA 1KCDA 1PE9A 3KRGA 2QXZA 2EWEA 1KTWA 2VBMA 3VMVA 5JMCB 3BH7B 3N6ZA 3ZPPA 3DU1X 4XQFA 3LYCA 4HWVA 2NSTA 3LJYA 5DNSA 4C2LA 2QX3A 2VFPA 1LLWA 1K8FA 4YZXA 3SY2A 3VMWA 2NT9A 3JX8A 2O17A 4PMHA 4URRA 2X85A 4XOTA 4Z05A 2O6WA 4MXNA 3GQ9A 4XLAA 4XLEA 4XR6A 3NB2A 4XKWA 4Z06A 1WMRA 2INUA 1VBLA 2VJIA 1IDKA 4XL9A 3EQOA 2ODLA 2X6YA 3WWGA 2VFOA 2J8IA 2BM6A 2PYHA 4OZYA 4W8RA 1TYVA 4XORA 1QA1A 1O8FA 3VSTA 1EE6A 2BX6A 2W7ZA 2O1DA 3NAWA 1QRBA 2NTPA 1QRCA 1QJVA 2O04A 4YDTA 1H80A 3GRHA 4NK6A 4YFOA 1L1IA 1OFDA 2NZMA 2VFNA 1LLZA 1JRGA 1O8DA 3B90A 1O8HA 1TYUA 4MR0A 1IA5A 3SZEA 5JLVC 1O8EA 1TYWA 1KQ5A 1O8LA 2F3LA 1OFMA 3B8YA 1KCCA 3TH0A 1AIRA 3PETA 2NTQA 4OJ5A 4U4BA 2PECA 2INVA 5C1EA 4XLHA 2V5IA 1HF2A 3P4GA 3EQNA 3RIQA 1IDJA 4XNFA 1PXZA 1BN8A 1DBGA 2XTWA 4EW9A 2VBEA 2VJJA 2Z8GA 2QY1A 4W8SA 4YEIA 1OFEA 4YZAA 1K4ZA 3B4NA 2UVEA 4JRAC 4XKVA 4OM9A 4W8QA 4OJ6A 1GQ8A 2XT2A 2XC1A 1HG8A 3PSZA 4XN0A 1IB4A 1QA2A 1O88A 1TSPA 3ML3A 3JURA 2O0WA 3GQ7A 2QZAA 1OFLA 4AVZA 1RMGA 1K5CA 4XLCA 1O8IA 1RWRA 2BM5A 2IOUG 1O8GA 5C1CA 2X6XA 3H09A 4XM3A 3GQ8A 4XOPA 3SUCA 1EZGA 4U49A 3SQVA 1DABA 2UVFA 1QA3A 2VFMA 2O0VA 1O8JA 1X0CA 5AMVA 1LM1A 4XN3A 4OJOA 2X3HA 3N90A 4W8TA 4XONA 2QYUA 4V02C 2XTYA 2BM4A 4YZ0A 2G0YA 1EA0A 1OOCA 1O8KA 2YUHA 2BM7A 2XT4A 4YC5A 4OJPA 2NSPA 1BHEA 2BSPA 4NK8A 2VFQA 4YEJA 3GQAA 4XLFA 1QCXA 3AK5A 3VSVA 1JTAA 4YELA 1WXRA 2X6WA 4YZQA 1OGMX 3VSUA 3ZSCA 3T9GA 3LMWA 4XMYA 3BH6B 1OGOX 3PSSA 4OZZA 1XG2A 1NHCA 4I84A 1RU4A 3SYJA 2VBKA 2IQ7A 3FY3A 1DBOA 1PLUA 4OJLA 2XTXA 4Z03A 3UW0A 1CZFA 2B0RA 2NT6A
chains in the Genus database with same CATH topology
4OJOA 1QQ1A 1CLWA 3N90A 4V02C 1TYVA 1QA1A 1K4ZA 2BM4A 1TYXA 4OPWA 2G0YA 2BX6A 4KH3A 2W7ZA 2YUHA 4JRAC 1QRBA 2BM7A 1QRCA 4OM9A 4OJPA 3BH7B 3N6ZA 5JMCB 4OJ6A 2VFNA 2VFQA 2XC1A 3LYCA 1QA2A 3LJYA 1TSPA 2VFPA 1K8FA 1TYUA 3ML3A 3AK5A 1WXRA 3SZEA 5JLVC 3JX8A 1TYWA 1KQ5A 2F3LA 2BM5A 2IOUG 3TH0A 3BH6B 3PETA 3H09A 4OJ5A 1DABA 1QA3A 2V5IA 3SYJA 1HF2A 2VFMA 3P4GA 4OJLA 3RIQA 2VFOA 2B0RA 2J8IA 2BM6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QQ1 A;  1CLW A;  1TYV A;  1QA1 A;  1TYX A;  4KH3 A;  1QRB A;  1QRC A;  4OM9 A;  2VFN A;  2VFQ A;  2XC1 A;  1QA2 A;  2VFP A;  1TSP A;  3ML3 A;  1TYU A;  3AK5 A;  1WXR A;  3SZE A;  1TYW A;  2IOU G;  3TH0 A;  3H09 A;  1DAB A;  1QA3 A;  2V5I A;  3SYJ A;  2VFM A;  3RIQ A;  2VFO A; 
#chains in the Genus database with same CATH topology
 1O8M A;  1QQ1 A;  1CLW A;  2PYG A;  2NTB A;  4OPW A;  1TYX A;  2J8K A;  4KH3 A;  4YCQ A;  1KCD A;  1PE9 A;  3KRG A;  2QXZ A;  2EWE A;  1KTW A;  2VBM A;  3VMV A;  5JMC B;  3BH7 B;  3N6Z A;  3ZPP A;  3DU1 X;  4XQF A;  3LYC A;  4HWV A;  2NST A;  3LJY A;  5DNS A;  4C2L A;  2QX3 A;  2VFP A;  1LLW A;  1K8F A;  4YZX A;  3SY2 A;  3VMW A;  2NT9 A;  3JX8 A;  2O17 A;  4PMH A;  4URR A;  2X85 A;  4XOT A;  4Z05 A;  2O6W A;  4MXN A;  3GQ9 A;  4XLA A;  4XLE A;  4XR6 A;  3NB2 A;  4XKW A;  4Z06 A;  1WMR A;  2INU A;  1VBL A;  2VJI A;  1IDK A;  4XL9 A;  3EQO A;  2ODL A;  2X6Y A;  3WWG A;  2VFO A;  2J8I A;  2BM6 A;  2PYH A;  4OZY A;  4W8R A;  1TYV A;  4XOR A;  1QA1 A;  1O8F A;  3VST A;  1EE6 A;  2BX6 A;  2W7Z A;  2O1D A;  3NAW A;  1QRB A;  2NTP A;  1QRC A;  1QJV A;  2O04 A;  4YDT A;  1H80 A;  3GRH A;  4NK6 A;  4YFO A;  1L1I A;  1OFD A;  2NZM A;  2VFN A;  1LLZ A;  1JRG A;  1O8D A;  3B90 A;  1O8H A;  1TYU A;  4MR0 A;  1IA5 A;  3SZE A;  5JLV C;  1O8E A;  1TYW A;  1KQ5 A;  1O8L A;  2F3L A;  1OFM A;  3B8Y A;  1KCC A;  3TH0 A;  1AIR A;  3PET A;  2NTQ A;  4OJ5 A;  4U4B A;  2PEC A;  2INV A;  5C1E A;  4XLH A;  2V5I A;  1HF2 A;  3P4G A;  3EQN A;  3RIQ A;  1IDJ A;  4XNF A;  1PXZ A;  1BN8 A;  1DBG A;  2XTW A;  4EW9 A;  2VBE A;  2VJJ A;  2Z8G A;  2QY1 A;  4W8S A;  4YEI A;  1OFE A;  4YZA A;  1K4Z A;  3B4N A;  2UVE A;  4JRA C;  4XKV A;  4OM9 A;  4W8Q A;  4OJ6 A;  1GQ8 A;  2XT2 A;  2XC1 A;  1HG8 A;  3PSZ A;  4XN0 A;  1IB4 A;  1QA2 A;  1O88 A;  1TSP A;  3ML3 A;  3JUR A;  2O0W A;  3GQ7 A;  2QZA A;  1OFL A;  4AVZ A;  1RMG A;  1K5C A;  4XLC A;  1O8I A;  1RWR A;  2BM5 A;  2IOU G;  1O8G A;  5C1C A;  2X6X A;  3H09 A;  4XM3 A;  3GQ8 A;  4XOP A;  3SUC A;  1EZG A;  4U49 A;  3SQV A;  1DAB A;  2UVF A;  1QA3 A;  2VFM A;  2O0V A;  1O8J A;  1X0C A;  5AMV A;  1LM1 A;  4XN3 A;  4OJO A;  2X3H A;  3N90 A;  4W8T A;  4XON A;  2QYU A;  4V02 C;  2XTY A;  2BM4 A;  4YZ0 A;  2G0Y A;  1EA0 A;  1OOC A;  1O8K A;  2YUH A;  2BM7 A;  2XT4 A;  4YC5 A;  4OJP A;  2NSP A;  1BHE A;  2BSP A;  4NK8 A;  2VFQ A;  4YEJ A;  3GQA A;  4XLF A;  1QCX A;  3AK5 A;  3VSV A;  1JTA A;  4YEL A;  1WXR A;  2X6W A;  4YZQ A;  1OGM X;  3VSU A;  3ZSC A;  3T9G A;  3LMW A;  4XMY A;  3BH6 B;  1OGO X;  3PSS A;  4OZZ A;  1XG2 A;  1NHC A;  4I84 A;  1RU4 A;  3SYJ A;  2VBK A;  2IQ7 A;  3FY3 A;  1DBO A;  1PLU A;  4OJL A;  2XTX A;  4Z03 A;  3UW0 A;  1CZF A;  2B0R A;  2NT6 A; 
#chains in the Genus database with same CATH homology
 4OJO A;  1QQ1 A;  1CLW A;  3N90 A;  4V02 C;  1TYV A;  1QA1 A;  1K4Z A;  2BM4 A;  1TYX A;  4OPW A;  2G0Y A;  2BX6 A;  4KH3 A;  2W7Z A;  2YUH A;  4JRA C;  1QRB A;  2BM7 A;  1QRC A;  4OM9 A;  4OJP A;  3BH7 B;  3N6Z A;  5JMC B;  4OJ6 A;  2VFN A;  2VFQ A;  2XC1 A;  3LYC A;  1QA2 A;  3LJY A;  1TSP A;  2VFP A;  1K8F A;  1TYU A;  3ML3 A;  3AK5 A;  1WXR A;  3SZE A;  5JLV C;  3JX8 A;  1TYW A;  1KQ5 A;  2F3L A;  2BM5 A;  2IOU G;  3TH0 A;  3BH6 B;  3PET A;  3H09 A;  4OJ5 A;  1DAB A;  1QA3 A;  2V5I A;  3SYJ A;  1HF2 A;  2VFM A;  3P4G A;  4OJL A;  3RIQ A;  2VFO A;  2B0R A;  2J8I A;  2BM6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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