1CLWA

Tailspike protein from phage p22, v331a mutant
Total Genus 188
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
554
structure length
543
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSASSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords TAILSPIKE PROTEIN
publication title Mutations improving the folding of phage P22 tailspike protein affect its receptor binding activity.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral protein
total genus 188
structure length 543
sequence length 554
ec nomenclature
pdb deposition date 1999-05-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1clwA00
1TYUA 1TYWA 2IOUG 3TH0A 3H09A 3SZEA 2VFMA 2VFOA 1TYVA 1TSPA 1QQ1A 1QA1A 1WXRA 3AK5A 1TYXA 2XC1A 3SYJA 1DABA 2VFQA 3ML3A 1QA3A 1CLWA 4KH3A 1QRCA 2VFNA 1QA2A 2VFPA 1QRBA 3RIQA 2V5IA 4OM9A
chains in the Genus database with same CATH superfamily
4XMYA 3EQOA 4W8SA 1H80A 1AIRA 4YCQA 4Z05A 1TYUA 1IA5A 4XOPA 3H09A 1O8FA 1XG2A 1RWRA 1TYVA 1TSPA 1O8KA 1OGOX 4XLCA 1K8FA 1VBLA 4XLHA 1JTAA 3GQ7A 3NB2A 4YDTA 4JRAC 3SYJA 4XM3A 2O04A 3JX8A 2QYUA 2BM6A 2O6WA 2NTPA 2NZMA 4OJOA 1RU4A 4U4BA 1L1IA 2BM5A 2BX6A 1DABA 1GQ8A 2XTYA 3ML3A 2J8KA 2QXZA 1QA3A 1PLUA 1KQ5A 2XT4A 2NTBA 4OJ5A 4KH3A 2VFNA 3LJYA 1O8GA 4XNFA 4YZXA 4XKWA 1OFMA 2W7ZA 4YZQA 2VJJA 2J8IA 3GQ8A 2IOUG 3LMWA 3SZEA 2EWEA 3DU1X 4V02C 4XONA 1QQ1A 2PYGA 2X6WA 2INUA 2NTQA 4OJ6A 2VBEA 4MR0A 4URRA 1PXZA 3VMVA 1K4ZA 2VBKA 1DBGA 1O8IA 1IDKA 2BM4A 1OOCA 4XLEA 2VFQA 3VSUA 3ZSCA 4AVZA 3P4GA 2XTWA 1LM1A 3LYCA 1QA2A 4YEJA 2NSTA 4Z03A 1OFLA 2QZAA 1OFDA 1LLZA 2YUHA 3PSZA 4XR6A 3GRHA 1X0CA 2X6XA 4Z06A 1BHEA 1O88A 2F3LA 1EE6A 5C1CA 3SUCA 2NT9A 3VMWA 1HG8A 4MXNA 3N6ZA 1QA1A 1WXRA 2Z8GA 2XC1A 1KTWA 3EQNA 1JRGA 5C1EA 1EA0A 1O8EA 2O17A 4OJLA 2B0RA 3ZPPA 1EZGA 4XOTA 2UVEA 2ODLA 3BH7B 2BSPA 3FY3A 3NAWA 4OJPA 4U49A 5AMVA 3WWGA 3GQAA 1CLWA 4YELA 3B8YA 1NHCA 1QCXA 4YZAA 4YFOA 1K5CA 4XQFA 1QRCA 5JLVC 1RMGA 1O8DA 2PYHA 2VFPA 1O8HA 5DNSA 3UW0A 1QRBA 2XTXA 1OFEA 2X3HA 4OM9A 1O8JA 4I84A 2O0WA 4PMHA 4W8QA 2IQ7A 1TYWA 4XN3A 3B4NA 4YEIA 3TH0A 5JMCB 2VBMA 2VFMA 2VFOA 2XT2A 2X6YA 4NK8A 4XLFA 4OPWA 1O8MA 3BH6B 1O8LA 4OZZA 3AK5A 1TYXA 4XN0A 1KCDA 2O1DA 3KRGA 4XORA 2X85A 3GQ9A 2UVFA 2NSPA 2QY1A 4XL9A 2INVA 4YZ0A 1KCCA 4YC5A 2O0VA 3PSSA 1LLWA 1HF2A 4XKVA 4NK6A 2NT6A 3SY2A 3N90A 4OZYA 4C2LA 4EW9A 1PE9A 1IDJA 1IB4A 3VSVA 2VJIA 1DBOA 1QJVA 4W8TA 3JURA 3T9GA 4XLAA 1OGMX 1WMRA 4HWVA 2BM7A 3PETA 3VSTA 3SQVA 3RIQA 1BN8A 2G0YA 2PECA 2V5IA 3B90A 1CZFA 4W8RA 2QX3A
chains in the Genus database with same CATH topology
2J8IA 1TYUA 1TYWA 2F3LA 2IOUG 3TH0A 3H09A 3SZEA 5JMCB 2VFMA 2VFOA 1TYVA 4V02C 1TSPA 4OPWA 1QQ1A 3BH6B 3N6ZA 1QA1A 1WXRA 4OJ6A 3AK5A 1TYXA 1K8FA 2XC1A 3SYJA 4JRAC 1K4ZA 3JX8A 4OJLA 2BM6A 2B0RA 2BM4A 1HF2A 4OJOA 3N90A 2BM5A 2BX6A 3BH7B 4OJPA 1DABA 2VFQA 3ML3A 1QA3A 1CLWA 1KQ5A 4OJ5A 4KH3A 3P4GA 1QRCA 2VFNA 2BM7A 3LYCA 3LJYA 2VFPA 3PETA 5JLVC 1QA2A 1QRBA 3RIQA 2V5IA 2G0YA 2YUHA 2W7ZA 4OM9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TYU A;  1TYW A;  2IOU G;  3TH0 A;  3H09 A;  3SZE A;  2VFM A;  2VFO A;  1TYV A;  1TSP A;  1QQ1 A;  1QA1 A;  1WXR A;  3AK5 A;  1TYX A;  2XC1 A;  3SYJ A;  1DAB A;  2VFQ A;  3ML3 A;  1QA3 A;  1CLW A;  4KH3 A;  1QRC A;  2VFN A;  1QA2 A;  2VFP A;  1QRB A;  3RIQ A;  2V5I A;  4OM9 A; 
#chains in the Genus database with same CATH topology
 4XMY A;  3EQO A;  4W8S A;  1H80 A;  1AIR A;  4YCQ A;  4Z05 A;  1TYU A;  1IA5 A;  4XOP A;  3H09 A;  1O8F A;  1XG2 A;  1RWR A;  1TYV A;  1TSP A;  1O8K A;  1OGO X;  4XLC A;  1K8F A;  1VBL A;  4XLH A;  1JTA A;  3GQ7 A;  3NB2 A;  4YDT A;  4JRA C;  3SYJ A;  4XM3 A;  2O04 A;  3JX8 A;  2QYU A;  2BM6 A;  2O6W A;  2NTP A;  2NZM A;  4OJO A;  1RU4 A;  4U4B A;  1L1I A;  2BM5 A;  2BX6 A;  1DAB A;  1GQ8 A;  2XTY A;  3ML3 A;  2J8K A;  2QXZ A;  1QA3 A;  1PLU A;  1KQ5 A;  2XT4 A;  2NTB A;  4OJ5 A;  4KH3 A;  2VFN A;  3LJY A;  1O8G A;  4XNF A;  4YZX A;  4XKW A;  1OFM A;  2W7Z A;  4YZQ A;  2VJJ A;  2J8I A;  3GQ8 A;  2IOU G;  3LMW A;  3SZE A;  2EWE A;  3DU1 X;  4V02 C;  4XON A;  1QQ1 A;  2PYG A;  2X6W A;  2INU A;  2NTQ A;  4OJ6 A;  2VBE A;  4MR0 A;  4URR A;  1PXZ A;  3VMV A;  1K4Z A;  2VBK A;  1DBG A;  1O8I A;  1IDK A;  2BM4 A;  1OOC A;  4XLE A;  2VFQ A;  3VSU A;  3ZSC A;  4AVZ A;  3P4G A;  2XTW A;  1LM1 A;  3LYC A;  1QA2 A;  4YEJ A;  2NST A;  4Z03 A;  1OFL A;  2QZA A;  1OFD A;  1LLZ A;  2YUH A;  3PSZ A;  4XR6 A;  3GRH A;  1X0C A;  2X6X A;  4Z06 A;  1BHE A;  1O88 A;  2F3L A;  1EE6 A;  5C1C A;  3SUC A;  2NT9 A;  3VMW A;  1HG8 A;  4MXN A;  3N6Z A;  1QA1 A;  1WXR A;  2Z8G A;  2XC1 A;  1KTW A;  3EQN A;  1JRG A;  5C1E A;  1EA0 A;  1O8E A;  2O17 A;  4OJL A;  2B0R A;  3ZPP A;  1EZG A;  4XOT A;  2UVE A;  2ODL A;  3BH7 B;  2BSP A;  3FY3 A;  3NAW A;  4OJP A;  4U49 A;  5AMV A;  3WWG A;  3GQA A;  1CLW A;  4YEL A;  3B8Y A;  1NHC A;  1QCX A;  4YZA A;  4YFO A;  1K5C A;  4XQF A;  1QRC A;  5JLV C;  1RMG A;  1O8D A;  2PYH A;  2VFP A;  1O8H A;  5DNS A;  3UW0 A;  1QRB A;  2XTX A;  1OFE A;  2X3H A;  4OM9 A;  1O8J A;  4I84 A;  2O0W A;  4PMH A;  4W8Q A;  2IQ7 A;  1TYW A;  4XN3 A;  3B4N A;  4YEI A;  3TH0 A;  5JMC B;  2VBM A;  2VFM A;  2VFO A;  2XT2 A;  2X6Y A;  4NK8 A;  4XLF A;  4OPW A;  1O8M A;  3BH6 B;  1O8L A;  4OZZ A;  3AK5 A;  1TYX A;  4XN0 A;  1KCD A;  2O1D A;  3KRG A;  4XOR A;  2X85 A;  3GQ9 A;  2UVF A;  2NSP A;  2QY1 A;  4XL9 A;  2INV A;  4YZ0 A;  1KCC A;  4YC5 A;  2O0V A;  3PSS A;  1LLW A;  1HF2 A;  4XKV A;  4NK6 A;  2NT6 A;  3SY2 A;  3N90 A;  4OZY A;  4C2L A;  4EW9 A;  1PE9 A;  1IDJ A;  1IB4 A;  3VSV A;  2VJI A;  1DBO A;  1QJV A;  4W8T A;  3JUR A;  3T9G A;  4XLA A;  1OGM X;  1WMR A;  4HWV A;  2BM7 A;  3PET A;  3VST A;  3SQV A;  3RIQ A;  1BN8 A;  2G0Y A;  2PEC A;  2V5I A;  3B90 A;  1CZF A;  4W8R A;  2QX3 A; 
#chains in the Genus database with same CATH homology
 2J8I A;  1TYU A;  1TYW A;  2F3L A;  2IOU G;  3TH0 A;  3H09 A;  3SZE A;  5JMC B;  2VFM A;  2VFO A;  1TYV A;  4V02 C;  1TSP A;  4OPW A;  1QQ1 A;  3BH6 B;  3N6Z A;  1QA1 A;  1WXR A;  4OJ6 A;  3AK5 A;  1TYX A;  1K8F A;  2XC1 A;  3SYJ A;  4JRA C;  1K4Z A;  3JX8 A;  4OJL A;  2BM6 A;  2B0R A;  2BM4 A;  1HF2 A;  4OJO A;  3N90 A;  2BM5 A;  2BX6 A;  3BH7 B;  4OJP A;  1DAB A;  2VFQ A;  3ML3 A;  1QA3 A;  1CLW A;  1KQ5 A;  4OJ5 A;  4KH3 A;  3P4G A;  1QRC A;  2VFN A;  2BM7 A;  3LYC A;  3LJY A;  2VFP A;  3PET A;  5JLV C;  1QA2 A;  1QRB A;  3RIQ A;  2V5I A;  2G0Y A;  2YUH A;  2W7Z A;  4OM9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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