1CLWA

Tailspike protein from phage p22, v331a mutant
Total Genus 188
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
554
structure length
543
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSASSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Mutations improving the folding of phage P22 tailspike protein affect its receptor binding activity.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral protein
molecule keywords TAILSPIKE PROTEIN
total genus 188
structure length 543
sequence length 554
ec nomenclature
pdb deposition date 1999-05-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1clwA00
1QRBA 1CLWA 2VFQA 1TSPA 3AK5A 2XC1A 2VFNA 1TYWA 1QA2A 1WXRA 2VFMA 3TH0A 1DABA 1QA3A 1QRCA 4KH3A 2IOUG 3ML3A 1TYUA 1QQ1A 2V5IA 3RIQA 1QA1A 2VFPA 3H09A 1TYVA 4OM9A 3SZEA 2VFOA 1TYXA 3SYJA
chains in the Genus database with same CATH superfamily
2NZMA 4XONA 4YEIA 1LM1A 3P4GA 4Z05A 3WWGA 4XMYA 1OFLA 4AVZA 3B90A 4MR0A 4OJPA 1PXZA 1JTAA 1O8MA 4XORA 3B4NA 4MXNA 4C2LA 1DABA 4YEJA 2BM7A 2BSPA 2IOUG 4YDTA 4YZQA 1O8FA 2UVFA 4OJOA 2X3HA 1O8KA 2W7ZA 4XLHA 4YZXA 1OGMX 4XR6A 4W8RA 2QZAA 3SUCA 3T9GA 2EWEA 2IQ7A 2XTWA 3NB2A 4URRA 4Z06A 2QXZA 4OM9A 5JMCB 1NHCA 3GQ8A 2QY1A 2VBEA 1RWRA 3JX8A 4U4BA 4XQFA 1DBGA 4XL9A 4XLFA 1O8HA 2PYGA 1O8GA 1HG8A 2NSPA 2NTQA 4XLCA 1TSPA 3BH6B 4PMHA 5AMVA 5C1CA 4YZ0A 1KCDA 1PLUA 1OFEA 2VFNA 2NT9A 3GRHA 1OFMA 4HWVA 3BH7B 2BM4A 1H80A 4YC5A 2BM6A 5JLVC 1WXRA 1KQ5A 2VFMA 2PECA 3NAWA 4XN3A 2Z8GA 1LLZA 3EQNA 1EE6A 1O8LA 3GQ9A 3ZPPA 4W8QA 4XLAA 2PYHA 4XM3A 2NT6A 3LMWA 1O8JA 4NK8A 3ML3A 2J8IA 1BN8A 3LYCA 4OZYA 1QQ1A 4U49A 1QCXA 4XLEA 1EA0A 3FY3A 1IB4A 2ODLA 1QA1A 1RMGA 4OZZA 1KCCA 1VBLA 3SQVA 2UVEA 1HF2A 2X6YA 3PSSA 1TYVA 3JURA 2O1DA 2VJJA 4XOTA 2QYUA 1QRBA 3VMVA 2VFQA 2XT2A 3AK5A 2XC1A 2XTXA 2BM5A 2VBMA 2F3LA 4I84A 1DBOA 1TYWA 1RU4A 1OGOX 3N90A 3VSTA 1QA3A 4OPWA 3PETA 1K5CA 2O0VA 2B0RA 4KH3A 2O0WA 3SY2A 1JRGA 3EQOA 3B8YA 2V5IA 4OJ5A 1OOCA 3GQ7A 1K8FA 1QJVA 2NTPA 1CZFA 2VJIA 3UW0A 2VFPA 4W8TA 3VSVA 4EW9A 2NSTA 2NTBA 2XT4A 4XOPA 2YUHA 1TYXA 2O04A 3VSUA 4OJ6A 4OJLA 3DU1X 3KRGA 1O8EA 1CLWA 4V02C 4YZAA 1KTWA 3SYJA 1XG2A 1EZGA 1LLWA 1WMRA 4XN0A 4YELA 1IA5A 3ZSCA 1X0CA 5DNSA 1QA2A 2J8KA 4YCQA 3TH0A 2VBKA 4W8SA 1GQ8A 1L1IA 3GQAA 1QRCA 1OFDA 3N6ZA 4JRAC 2X6XA 1BHEA 4XKVA 1TYUA 2O6WA 2X85A 2INUA 2INVA 2X6WA 3LJYA 1O8DA 4XKWA 5C1EA 3RIQA 4Z03A 3PSZA 3VMWA 1K4ZA 1O8IA 4NK6A 2XTYA 1IDJA 1PE9A 3H09A 1O88A 2QX3A 4XNFA 3SZEA 1AIRA 2VFOA 2G0YA 2O17A 4YFOA 2BX6A 1IDKA
chains in the Genus database with same CATH topology
1QRBA 1CLWA 2VFQA 4V02C 1TSPA 3BH6B 3P4GA 2VFNA 2XC1A 3SYJA 3AK5A 2BM5A 4OJPA 3BH7B 2BM4A 2F3LA 2BM6A 1TYWA 5JLVC 1QA2A 1KQ5A 2VFMA 3TH0A 1WXRA 1DABA 3N90A 1QA3A 4OPWA 3N6ZA 2BM7A 1QRCA 3PETA 4JRAC 4OJ6A 2B0RA 4KH3A 2IOUG 3ML3A 2J8IA 3LYCA 1TYUA 1QQ1A 3LJYA 4OJOA 2V5IA 2W7ZA 4OJ5A 3RIQA 1K8FA 1QA1A 1K4ZA 2VFPA 3H09A 1HF2A 5JMCB 1TYVA 4OM9A 3SZEA 2VFOA 2YUHA 2G0YA 1TYXA 3JX8A 2BX6A 4OJLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QRB A;  1CLW A;  2VFQ A;  1TSP A;  3AK5 A;  2XC1 A;  2VFN A;  1TYW A;  1QA2 A;  1WXR A;  2VFM A;  3TH0 A;  1DAB A;  1QA3 A;  1QRC A;  4KH3 A;  2IOU G;  3ML3 A;  1TYU A;  1QQ1 A;  2V5I A;  3RIQ A;  1QA1 A;  2VFP A;  3H09 A;  1TYV A;  4OM9 A;  3SZE A;  2VFO A;  1TYX A;  3SYJ A; 
#chains in the Genus database with same CATH topology
 2NZM A;  4XON A;  4YEI A;  1LM1 A;  3P4G A;  4Z05 A;  3WWG A;  4XMY A;  1OFL A;  4AVZ A;  3B90 A;  4MR0 A;  4OJP A;  1PXZ A;  1JTA A;  1O8M A;  4XOR A;  3B4N A;  4MXN A;  4C2L A;  1DAB A;  4YEJ A;  2BM7 A;  2BSP A;  2IOU G;  4YDT A;  4YZQ A;  1O8F A;  2UVF A;  4OJO A;  2X3H A;  1O8K A;  2W7Z A;  4XLH A;  4YZX A;  1OGM X;  4XR6 A;  4W8R A;  2QZA A;  3SUC A;  3T9G A;  2EWE A;  2IQ7 A;  2XTW A;  3NB2 A;  4URR A;  4Z06 A;  2QXZ A;  4OM9 A;  5JMC B;  1NHC A;  3GQ8 A;  2QY1 A;  2VBE A;  1RWR A;  3JX8 A;  4U4B A;  4XQF A;  1DBG A;  4XL9 A;  4XLF A;  1O8H A;  2PYG A;  1O8G A;  1HG8 A;  2NSP A;  2NTQ A;  4XLC A;  1TSP A;  3BH6 B;  4PMH A;  5AMV A;  5C1C A;  4YZ0 A;  1KCD A;  1PLU A;  1OFE A;  2VFN A;  2NT9 A;  3GRH A;  1OFM A;  4HWV A;  3BH7 B;  2BM4 A;  1H80 A;  4YC5 A;  2BM6 A;  5JLV C;  1WXR A;  1KQ5 A;  2VFM A;  2PEC A;  3NAW A;  4XN3 A;  2Z8G A;  1LLZ A;  3EQN A;  1EE6 A;  1O8L A;  3GQ9 A;  3ZPP A;  4W8Q A;  4XLA A;  2PYH A;  4XM3 A;  2NT6 A;  3LMW A;  1O8J A;  4NK8 A;  3ML3 A;  2J8I A;  1BN8 A;  3LYC A;  4OZY A;  1QQ1 A;  4U49 A;  1QCX A;  4XLE A;  1EA0 A;  3FY3 A;  1IB4 A;  2ODL A;  1QA1 A;  1RMG A;  4OZZ A;  1KCC A;  1VBL A;  3SQV A;  2UVE A;  1HF2 A;  2X6Y A;  3PSS A;  1TYV A;  3JUR A;  2O1D A;  2VJJ A;  4XOT A;  2QYU A;  1QRB A;  3VMV A;  2VFQ A;  2XT2 A;  3AK5 A;  2XC1 A;  2XTX A;  2BM5 A;  2VBM A;  2F3L A;  4I84 A;  1DBO A;  1TYW A;  1RU4 A;  1OGO X;  3N90 A;  3VST A;  1QA3 A;  4OPW A;  3PET A;  1K5C A;  2O0V A;  2B0R A;  4KH3 A;  2O0W A;  3SY2 A;  1JRG A;  3EQO A;  3B8Y A;  2V5I A;  4OJ5 A;  1OOC A;  3GQ7 A;  1K8F A;  1QJV A;  2NTP A;  1CZF A;  2VJI A;  3UW0 A;  2VFP A;  4W8T A;  3VSV A;  4EW9 A;  2NST A;  2NTB A;  2XT4 A;  4XOP A;  2YUH A;  1TYX A;  2O04 A;  3VSU A;  4OJ6 A;  4OJL A;  3DU1 X;  3KRG A;  1O8E A;  1CLW A;  4V02 C;  4YZA A;  1KTW A;  3SYJ A;  1XG2 A;  1EZG A;  1LLW A;  1WMR A;  4XN0 A;  4YEL A;  1IA5 A;  3ZSC A;  1X0C A;  5DNS A;  1QA2 A;  2J8K A;  4YCQ A;  3TH0 A;  2VBK A;  4W8S A;  1GQ8 A;  1L1I A;  3GQA A;  1QRC A;  1OFD A;  3N6Z A;  4JRA C;  2X6X A;  1BHE A;  4XKV A;  1TYU A;  2O6W A;  2X85 A;  2INU A;  2INV A;  2X6W A;  3LJY A;  1O8D A;  4XKW A;  5C1E A;  3RIQ A;  4Z03 A;  3PSZ A;  3VMW A;  1K4Z A;  1O8I A;  4NK6 A;  2XTY A;  1IDJ A;  1PE9 A;  3H09 A;  1O88 A;  2QX3 A;  4XNF A;  3SZE A;  1AIR A;  2VFO A;  2G0Y A;  2O17 A;  4YFO A;  2BX6 A;  1IDK A; 
#chains in the Genus database with same CATH homology
 1QRB A;  1CLW A;  2VFQ A;  4V02 C;  1TSP A;  3BH6 B;  3P4G A;  2VFN A;  2XC1 A;  3SYJ A;  3AK5 A;  2BM5 A;  4OJP A;  3BH7 B;  2BM4 A;  2F3L A;  2BM6 A;  1TYW A;  5JLV C;  1QA2 A;  1KQ5 A;  2VFM A;  3TH0 A;  1WXR A;  1DAB A;  3N90 A;  1QA3 A;  4OPW A;  3N6Z A;  2BM7 A;  1QRC A;  3PET A;  4JRA C;  4OJ6 A;  2B0R A;  4KH3 A;  2IOU G;  3ML3 A;  2J8I A;  3LYC A;  1TYU A;  1QQ1 A;  3LJY A;  4OJO A;  2V5I A;  2W7Z A;  4OJ5 A;  3RIQ A;  1K8F A;  1QA1 A;  1K4Z A;  2VFP A;  3H09 A;  1HF2 A;  5JMC B;  1TYV A;  4OM9 A;  3SZE A;  2VFO A;  2YUH A;  2G0Y A;  1TYX A;  3JX8 A;  2BX6 A;  4OJL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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