1CLWA

Tailspike protein from phage p22, v331a mutant
Total Genus 188
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
554
structure length
543
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSASSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords TAILSPIKE PROTEIN
publication title Mutations improving the folding of phage P22 tailspike protein affect its receptor binding activity.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral protein
total genus 188
structure length 543
sequence length 554
ec nomenclature
pdb deposition date 1999-05-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1clwA00
1TYVA 3SYJA 2V5IA 2IOUG 1TYWA 1QA1A 1WXRA 1QRCA 4OM9A 1QRBA 3ML3A 1DABA 2XC1A 1TSPA 1TYXA 1QA2A 3SZEA 3RIQA 2VFMA 1QQ1A 2VFQA 2VFPA 2VFNA 2VFOA 1CLWA 3AK5A 4KH3A 3H09A 1QA3A 1TYUA 3TH0A
chains in the Genus database with same CATH superfamily
3SYJA 3GQ8A 2VBKA 1WMRA 3JURA 1DBOA 2IOUG 1TYWA 2YUHA 2EWEA 4OM9A 2XT4A 3KRGA 1O8KA 4XOTA 5JLVC 2XTWA 1DABA 1OGOX 4W8SA 2BM6A 4YCQA 4Z05A 2NT9A 4W8TA 1H80A 1QA2A 3B4NA 1LM1A 2NT6A 3SY2A 4XLAA 4XLCA 3GQ7A 4OPWA 5JMCB 3RIQA 1KCCA 4W8QA 1OFLA 4OJ6A 2VFMA 1VBLA 3WWGA 2VFPA 3EQNA 1BN8A 2O17A 4W8RA 4OJOA 1K4ZA 1RU4A 3PETA 4YZXA 1KTWA 2ODLA 1IDJA 1CZFA 1XG2A 1RMGA 2BM5A 4XQFA 4Z03A 4NK8A 4OZZA 4YEIA 1TYVA 3B90A 1O8IA 1K8FA 4YDTA 4XL9A 2PYHA 1QRCA 1WXRA 2X85A 2VJIA 1QJVA 2BM4A 4XN0A 2O0WA 2XT2A 3DU1X 4PMHA 3N90A 1PE9A 1DBGA 3T9GA 3UW0A 1GQ8A 5DNSA 1PXZA 2X6WA 1QCXA 1OFMA 1EZGA 2QY1A 2X6YA 4XORA 4YFOA 4YEJA 1OOCA 4XN3A 3ZSCA 1K5CA 1KCDA 2NTPA 4MXNA 1HF2A 4XONA 4YZ0A 4I84A 3ZPPA 3P4GA 3B8YA 4XNFA 4OJPA 4Z06A 2VFQA 4U49A 4XR6A 1IA5A 2INUA 4KH3A 2BM7A 3SUCA 1HG8A 4OZYA 4XKVA 2X6XA 1EE6A 3TH0A 2UVFA 4C2LA 4NK6A 1IDKA 1O88A 2V5IA 4MR0A 4YZQA 1QA1A 2VJJA 5C1EA 1LLZA 1EA0A 2BX6A 3ML3A 2W7ZA 3PSZA 2XC1A 4XOPA 3GQ9A 4XKWA 2NTBA 1O8GA 4HWVA 4V02C 1TYXA 2F3LA 4AVZA 2O04A 2XTYA 2PECA 3N6ZA 1LLWA 3JX8A 4URRA 1L1IA 1O8LA 1PLUA 3LJYA 2INVA 4XLFA 3BH6B 3FY3A 1X0CA 4XLEA 1CLWA 4YC5A 2PYGA 2NSTA 2NSPA 3H09A 1QA3A 2X3HA 3VMVA 3VSTA 1O8HA 1IB4A 2Z8GA 2VBMA 4YELA 2NTQA 3PSSA 1JRGA 1NHCA 2G0YA 2IQ7A 1QRBA 3VMWA 2O1DA 4YZAA 5C1CA 1AIRA 1OGMX 2QX3A 3GQAA 1KQ5A 4JRAC 4U4BA 1OFDA 1TSPA 2BSPA 2QYUA 2O6WA 4OJ5A 5AMVA 1O8EA 3SZEA 1O8MA 4EW9A 2J8KA 3SQVA 3NAWA 3LMWA 3EQOA 2UVEA 4OJLA 4XMYA 2QZAA 3NB2A 1OFEA 1QQ1A 3GRHA 4XM3A 3VSVA 2VBEA 2J8IA 1O8DA 2QXZA 2VFNA 2O0VA 2VFOA 4XLHA 3AK5A 1O8JA 2B0RA 1O8FA 3BH7B 3LYCA 1TYUA 2NZMA 2XTXA 1BHEA 1RWRA 1JTAA 3VSUA
chains in the Genus database with same CATH topology
1TYVA 3SYJA 1K8FA 2V5IA 2IOUG 1TYWA 2YUHA 1QA1A 1QRCA 4OM9A 1WXRA 2G0YA 1QRBA 2BM4A 2BX6A 3ML3A 1DABA 2W7ZA 1KQ5A 4JRAC 3N90A 5JLVC 2XC1A 1TSPA 2BM6A 4OJ5A 1TYXA 2F3LA 4V02C 1QA2A 3SZEA 3N6ZA 3JX8A 1HF2A 4OPWA 4OJLA 3RIQA 5JMCB 3LJYA 4OJ6A 2VFMA 3P4GA 1QQ1A 3BH6B 4OJPA 2VFQA 2J8IA 2VFNA 2VFOA 1CLWA 2VFPA 4OJOA 1K4ZA 3PETA 2B0RA 3H09A 4KH3A 2BM7A 1QA3A 3BH7B 2BM5A 1TYUA 3LYCA 3AK5A 3TH0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TYV A;  3SYJ A;  2V5I A;  2IOU G;  1TYW A;  1QA1 A;  1WXR A;  1QRC A;  4OM9 A;  1QRB A;  3ML3 A;  1DAB A;  2XC1 A;  1TSP A;  1TYX A;  1QA2 A;  3SZE A;  3RIQ A;  2VFM A;  1QQ1 A;  2VFQ A;  2VFP A;  2VFN A;  2VFO A;  1CLW A;  3AK5 A;  4KH3 A;  3H09 A;  1QA3 A;  1TYU A;  3TH0 A; 
#chains in the Genus database with same CATH topology
 3SYJ A;  3GQ8 A;  2VBK A;  1WMR A;  3JUR A;  1DBO A;  2IOU G;  1TYW A;  2YUH A;  2EWE A;  4OM9 A;  2XT4 A;  3KRG A;  1O8K A;  4XOT A;  5JLV C;  2XTW A;  1DAB A;  1OGO X;  4W8S A;  2BM6 A;  4YCQ A;  4Z05 A;  2NT9 A;  4W8T A;  1H80 A;  1QA2 A;  3B4N A;  1LM1 A;  2NT6 A;  3SY2 A;  4XLA A;  4XLC A;  3GQ7 A;  4OPW A;  5JMC B;  3RIQ A;  1KCC A;  4W8Q A;  1OFL A;  4OJ6 A;  2VFM A;  1VBL A;  3WWG A;  2VFP A;  3EQN A;  1BN8 A;  2O17 A;  4W8R A;  4OJO A;  1K4Z A;  1RU4 A;  3PET A;  4YZX A;  1KTW A;  2ODL A;  1IDJ A;  1CZF A;  1XG2 A;  1RMG A;  2BM5 A;  4XQF A;  4Z03 A;  4NK8 A;  4OZZ A;  4YEI A;  1TYV A;  3B90 A;  1O8I A;  1K8F A;  4YDT A;  4XL9 A;  2PYH A;  1QRC A;  1WXR A;  2X85 A;  2VJI A;  1QJV A;  2BM4 A;  4XN0 A;  2O0W A;  2XT2 A;  3DU1 X;  4PMH A;  3N90 A;  1PE9 A;  1DBG A;  3T9G A;  3UW0 A;  1GQ8 A;  5DNS A;  1PXZ A;  2X6W A;  1QCX A;  1OFM A;  1EZG A;  2QY1 A;  2X6Y A;  4XOR A;  4YFO A;  4YEJ A;  1OOC A;  4XN3 A;  3ZSC A;  1K5C A;  1KCD A;  2NTP A;  4MXN A;  1HF2 A;  4XON A;  4YZ0 A;  4I84 A;  3ZPP A;  3P4G A;  3B8Y A;  4XNF A;  4OJP A;  4Z06 A;  2VFQ A;  4U49 A;  4XR6 A;  1IA5 A;  2INU A;  4KH3 A;  2BM7 A;  3SUC A;  1HG8 A;  4OZY A;  4XKV A;  2X6X A;  1EE6 A;  3TH0 A;  2UVF A;  4C2L A;  4NK6 A;  1IDK A;  1O88 A;  2V5I A;  4MR0 A;  4YZQ A;  1QA1 A;  2VJJ A;  5C1E A;  1LLZ A;  1EA0 A;  2BX6 A;  3ML3 A;  2W7Z A;  3PSZ A;  2XC1 A;  4XOP A;  3GQ9 A;  4XKW A;  2NTB A;  1O8G A;  4HWV A;  4V02 C;  1TYX A;  2F3L A;  4AVZ A;  2O04 A;  2XTY A;  2PEC A;  3N6Z A;  1LLW A;  3JX8 A;  4URR A;  1L1I A;  1O8L A;  1PLU A;  3LJY A;  2INV A;  4XLF A;  3BH6 B;  3FY3 A;  1X0C A;  4XLE A;  1CLW A;  4YC5 A;  2PYG A;  2NST A;  2NSP A;  3H09 A;  1QA3 A;  2X3H A;  3VMV A;  3VST A;  1O8H A;  1IB4 A;  2Z8G A;  2VBM A;  4YEL A;  2NTQ A;  3PSS A;  1JRG A;  1NHC A;  2G0Y A;  2IQ7 A;  1QRB A;  3VMW A;  2O1D A;  4YZA A;  5C1C A;  1AIR A;  1OGM X;  2QX3 A;  3GQA A;  1KQ5 A;  4JRA C;  4U4B A;  1OFD A;  1TSP A;  2BSP A;  2QYU A;  2O6W A;  4OJ5 A;  5AMV A;  1O8E A;  3SZE A;  1O8M A;  4EW9 A;  2J8K A;  3SQV A;  3NAW A;  3LMW A;  3EQO A;  2UVE A;  4OJL A;  4XMY A;  2QZA A;  3NB2 A;  1OFE A;  1QQ1 A;  3GRH A;  4XM3 A;  3VSV A;  2VBE A;  2J8I A;  1O8D A;  2QXZ A;  2VFN A;  2O0V A;  2VFO A;  4XLH A;  3AK5 A;  1O8J A;  2B0R A;  1O8F A;  3BH7 B;  3LYC A;  1TYU A;  2NZM A;  2XTX A;  1BHE A;  1RWR A;  1JTA A;  3VSU A; 
#chains in the Genus database with same CATH homology
 1TYV A;  3SYJ A;  1K8F A;  2V5I A;  2IOU G;  1TYW A;  2YUH A;  1QA1 A;  1QRC A;  4OM9 A;  1WXR A;  2G0Y A;  1QRB A;  2BM4 A;  2BX6 A;  3ML3 A;  1DAB A;  2W7Z A;  1KQ5 A;  4JRA C;  3N90 A;  5JLV C;  2XC1 A;  1TSP A;  2BM6 A;  4OJ5 A;  1TYX A;  2F3L A;  4V02 C;  1QA2 A;  3SZE A;  3N6Z A;  3JX8 A;  1HF2 A;  4OPW A;  4OJL A;  3RIQ A;  5JMC B;  3LJY A;  4OJ6 A;  2VFM A;  3P4G A;  1QQ1 A;  3BH6 B;  4OJP A;  2VFQ A;  2J8I A;  2VFN A;  2VFO A;  1CLW A;  2VFP A;  4OJO A;  1K4Z A;  3PET A;  2B0R A;  3H09 A;  4KH3 A;  2BM7 A;  1QA3 A;  3BH7 B;  2BM5 A;  1TYU A;  3LYC A;  3AK5 A;  3TH0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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