1CLWA

Tailspike protein from phage p22, v331a mutant
Total Genus 188
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
554
structure length
543
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSASSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
source organism Enterobacteria phage p22
publication title Mutations improving the folding of phage P22 tailspike protein affect its receptor binding activity.
pubmed doi rcsb
molecule keywords TAILSPIKE PROTEIN
total genus 188
structure length 543
sequence length 554
ec nomenclature
pdb deposition date 1999-05-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1clwA00
4KH3A 1WXRA 2VFPA 1QRBA 2VFMA 1QRCA 3H09A 3TH0A 3AK5A 4OM9A 3RIQA 1QQ1A 3SYJA 1DABA 1TYXA 1CLWA 1TYUA 1TYVA 3ML3A 2VFQA 1QA2A 3SZEA 2VFOA 2IOUG 2VFNA 1QA3A 2XC1A 1TSPA 1TYWA 2V5IA 1QA1A
chains in the Genus database with same CATH superfamily
4KH3A 4XKWA 3VSVA 1LLWA 2BX6A 4XNFA 2X6XA 3N90A 3BH7B 5DNSA 2VFMA 2XTYA 5JLVC 1H80A 2O0VA 4Z03A 3AK5A 2O0WA 1QCXA 3ZSCA 2VJJA 1QQ1A 4OPWA 4W8RA 4C2LA 1JTAA 2NSPA 1BHEA 4OJ6A 1OFDA 4MXNA 4XLFA 4XLAA 1VBLA 1TYXA 2BM6A 4XN3A 1PLUA 2QX3A 3DU1X 4YELA 4XLEA 2VBKA 2QZAA 3PSSA 3VSUA 3JURA 3PSZA 2VBEA 3ZPPA 1OFEA 3ML3A 1KCCA 3KRGA 1K8FA 1X0CA 3SUCA 4YZXA 4URRA 3SZEA 3JX8A 1KCDA 2VFNA 4W8SA 1PXZA 3B90A 1TYVA 1IDKA 1WXRA 3VMWA 1PE9A 1K5CA 3FY3A 4JRAC 4U4BA 2BM5A 1HF2A 2QYUA 2G0YA 3EQOA 3H09A 4YEJA 4YC5A 3VSTA 1XG2A 4OM9A 4W8TA 3RIQA 2NT6A 1IDJA 2XTWA 1O8GA 3LYCA 2XTXA 1EZGA 2NTBA 4OJOA 4NK6A 1O8EA 4U49A 4YZ0A 3NAWA 4YCQA 3N6ZA 3NB2A 1IA5A 3B4NA 1RMGA 2J8IA 4V02C 2VJIA 4I84A 2VFQA 1RU4A 4XM3A 3BH6B 1NHCA 1OGMX 2IOUG 2PYGA 2VFOA 4Z06A 4OJLA 1TYWA 1O8DA 4YDTA 2W7ZA 4YZQA 4EW9A 4HWVA 3P4GA 2EWEA 1QRBA 2VFPA 5C1CA 1OGOX 2O17A 4YFOA 3TH0A 1QRCA 2PYHA 4YEIA 4XKVA 1O8IA 1OFLA 1LM1A 3T9GA 4AVZA 4XQFA 3VMVA 1K4ZA 4XN0A 3B8YA 1OOCA 3WWGA 1BN8A 1IB4A 2X6YA 1EE6A 1O8MA 1DABA 1JRGA 1O8FA 1HG8A 3GQ7A 2ODLA 3PETA 3UW0A 1EA0A 1CZFA 4XLCA 2NT9A 1O8LA 4YZAA 1TYUA 2QXZA 4XORA 2F3LA 1DBOA 5C1EA 1O8JA 2J8KA 2XT4A 3LMWA 2YUHA 4XR6A 2VBMA 3GQAA 4PMHA 4XOTA 1WMRA 1KTWA 2XC1A 3GQ8A 4XOPA 1LLZA 3EQNA 4OJPA 2UVEA 2PECA 2Z8GA 4W8QA 5AMVA 1OFMA 1O88A 4OJ5A 1O8HA 2IQ7A 2BSPA 2INVA 2UVFA 3GQ9A 4XL9A 1RWRA 4XMYA 3GRHA 4XLHA 3SYJA 2NTQA 4Z05A 2X85A 1AIRA 1GQ8A 4OZZA 1KQ5A 5JMCB 2NSTA 4XONA 2X6WA 2B0RA 2INUA 1QJVA 4MR0A 1CLWA 3LJYA 2XT2A 2QY1A 3SY2A 1L1IA 1DBGA 1O8KA 2X3HA 2O04A 2NZMA 2O1DA 2O6WA 4OZYA 1QA2A 2BM4A 3SQVA 1QA3A 2BM7A 1TSPA 2NTPA 2V5IA 4NK8A 1QA1A
chains in the Genus database with same CATH topology
4KH3A 3P4GA 2VFPA 1QRBA 1WXRA 2BX6A 4OJ5A 3N90A 4JRAC 3BH7B 2VFMA 1QRCA 1HF2A 2BM5A 2G0YA 3H09A 3TH0A 5JLVC 3AK5A 4OM9A 1K4ZA 3RIQA 2V5IA 1QQ1A 4OPWA 3SYJA 3LYCA 4OJ6A 1KQ5A 5JMCB 1DABA 1TYXA 3PETA 2B0RA 2BM6A 4OJOA 1CLWA 3N6ZA 3LJYA 1TYUA 2J8IA 4OJLA 4V02C 2F3LA 3ML3A 2VFQA 1K8FA 2YUHA 3BH6B 3SZEA 3JX8A 2VFOA 2BM4A 2IOUG 2VFNA 1QA2A 1QA3A 2BM7A 1TSPA 1TYWA 2XC1A 1TYVA 4OJPA 1QA1A 2W7ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KH3 A;  1WXR A;  2VFP A;  1QRB A;  2VFM A;  1QRC A;  3H09 A;  3TH0 A;  3AK5 A;  4OM9 A;  3RIQ A;  1QQ1 A;  3SYJ A;  1DAB A;  1TYX A;  1CLW A;  1TYU A;  1TYV A;  3ML3 A;  2VFQ A;  1QA2 A;  3SZE A;  2VFO A;  2IOU G;  2VFN A;  1QA3 A;  2XC1 A;  1TSP A;  1TYW A;  2V5I A;  1QA1 A; 
#chains in the Genus database with same CATH topology
 4KH3 A;  4XKW A;  3VSV A;  1LLW A;  2BX6 A;  4XNF A;  2X6X A;  3N90 A;  3BH7 B;  5DNS A;  2VFM A;  2XTY A;  5JLV C;  1H80 A;  2O0V A;  4Z03 A;  3AK5 A;  2O0W A;  1QCX A;  3ZSC A;  2VJJ A;  1QQ1 A;  4OPW A;  4W8R A;  4C2L A;  1JTA A;  2NSP A;  1BHE A;  4OJ6 A;  1OFD A;  4MXN A;  4XLF A;  4XLA A;  1VBL A;  1TYX A;  2BM6 A;  4XN3 A;  1PLU A;  2QX3 A;  3DU1 X;  4YEL A;  4XLE A;  2VBK A;  2QZA A;  3PSS A;  3VSU A;  3JUR A;  3PSZ A;  2VBE A;  3ZPP A;  1OFE A;  3ML3 A;  1KCC A;  3KRG A;  1K8F A;  1X0C A;  3SUC A;  4YZX A;  4URR A;  3SZE A;  3JX8 A;  1KCD A;  2VFN A;  4W8S A;  1PXZ A;  3B90 A;  1TYV A;  1IDK A;  1WXR A;  3VMW A;  1PE9 A;  1K5C A;  3FY3 A;  4JRA C;  4U4B A;  2BM5 A;  1HF2 A;  2QYU A;  2G0Y A;  3EQO A;  3H09 A;  4YEJ A;  4YC5 A;  3VST A;  1XG2 A;  4OM9 A;  4W8T A;  3RIQ A;  2NT6 A;  1IDJ A;  2XTW A;  1O8G A;  3LYC A;  2XTX A;  1EZG A;  2NTB A;  4OJO A;  4NK6 A;  1O8E A;  4U49 A;  4YZ0 A;  3NAW A;  4YCQ A;  3N6Z A;  3NB2 A;  1IA5 A;  3B4N A;  1RMG A;  2J8I A;  4V02 C;  2VJI A;  4I84 A;  2VFQ A;  1RU4 A;  4XM3 A;  3BH6 B;  1NHC A;  1OGM X;  2IOU G;  2PYG A;  2VFO A;  4Z06 A;  4OJL A;  1TYW A;  1O8D A;  4YDT A;  2W7Z A;  4YZQ A;  4EW9 A;  4HWV A;  3P4G A;  2EWE A;  1QRB A;  2VFP A;  5C1C A;  1OGO X;  2O17 A;  4YFO A;  3TH0 A;  1QRC A;  2PYH A;  4YEI A;  4XKV A;  1O8I A;  1OFL A;  1LM1 A;  3T9G A;  4AVZ A;  4XQF A;  3VMV A;  1K4Z A;  4XN0 A;  3B8Y A;  1OOC A;  3WWG A;  1BN8 A;  1IB4 A;  2X6Y A;  1EE6 A;  1O8M A;  1DAB A;  1JRG A;  1O8F A;  1HG8 A;  3GQ7 A;  2ODL A;  3PET A;  3UW0 A;  1EA0 A;  1CZF A;  4XLC A;  2NT9 A;  1O8L A;  4YZA A;  1TYU A;  2QXZ A;  4XOR A;  2F3L A;  1DBO A;  5C1E A;  1O8J A;  2J8K A;  2XT4 A;  3LMW A;  2YUH A;  4XR6 A;  2VBM A;  3GQA A;  4PMH A;  4XOT A;  1WMR A;  1KTW A;  2XC1 A;  3GQ8 A;  4XOP A;  1LLZ A;  3EQN A;  4OJP A;  2UVE A;  2PEC A;  2Z8G A;  4W8Q A;  5AMV A;  1OFM A;  1O88 A;  4OJ5 A;  1O8H A;  2IQ7 A;  2BSP A;  2INV A;  2UVF A;  3GQ9 A;  4XL9 A;  1RWR A;  4XMY A;  3GRH A;  4XLH A;  3SYJ A;  2NTQ A;  4Z05 A;  2X85 A;  1AIR A;  1GQ8 A;  4OZZ A;  1KQ5 A;  5JMC B;  2NST A;  4XON A;  2X6W A;  2B0R A;  2INU A;  1QJV A;  4MR0 A;  1CLW A;  3LJY A;  2XT2 A;  2QY1 A;  3SY2 A;  1L1I A;  1DBG A;  1O8K A;  2X3H A;  2O04 A;  2NZM A;  2O1D A;  2O6W A;  4OZY A;  1QA2 A;  2BM4 A;  3SQV A;  1QA3 A;  2BM7 A;  1TSP A;  2NTP A;  2V5I A;  4NK8 A;  1QA1 A; 
#chains in the Genus database with same CATH homology
 4KH3 A;  3P4G A;  2VFP A;  1QRB A;  1WXR A;  2BX6 A;  4OJ5 A;  3N90 A;  4JRA C;  3BH7 B;  2VFM A;  1QRC A;  1HF2 A;  2BM5 A;  2G0Y A;  3H09 A;  3TH0 A;  5JLV C;  3AK5 A;  4OM9 A;  1K4Z A;  3RIQ A;  2V5I A;  1QQ1 A;  4OPW A;  3SYJ A;  3LYC A;  4OJ6 A;  1KQ5 A;  5JMC B;  1DAB A;  1TYX A;  3PET A;  2B0R A;  2BM6 A;  4OJO A;  1CLW A;  3N6Z A;  3LJY A;  1TYU A;  2J8I A;  4OJL A;  4V02 C;  2F3L A;  3ML3 A;  2VFQ A;  1K8F A;  2YUH A;  3BH6 B;  3SZE A;  3JX8 A;  2VFO A;  2BM4 A;  2IOU G;  2VFN A;  1QA2 A;  1QA3 A;  2BM7 A;  1TSP A;  1TYW A;  2XC1 A;  1TYV A;  4OJP A;  1QA1 A;  2W7Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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