1QRCA

Tailspike protein, mutant w391a
Total Genus 190
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
190
sequence length
554
structure length
543
Chain Sequence
b'YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVADGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords TAILSPIKE PROTEIN
molecule tags Viral protein
publication title Plasticity and steric strain in a parallel beta-helix: rational mutations in the P22 tailspike protein.
pubmed doi rcsb
total genus 190
structure length 543
sequence length 554
ec nomenclature
pdb deposition date 1999-06-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1qrcA00
4OM9A 2XC1A 3SYJA 2VFOA 1TYXA 3RIQA 1QA1A 1QRBA 1TSPA 1TYUA 3H09A 1DABA 3ML3A 2VFPA 1WXRA 1QA2A 3TH0A 1QQ1A 3AK5A 3SZEA 1TYWA 1QA3A 1CLWA 4KH3A 2VFNA 2IOUG 1QRCA 2VFMA 2V5IA 1TYVA 2VFQA
chains in the Genus database with same CATH superfamily
3FY3A 1KQ5A 3LJYA 4Z06A 2BM4A 4NK8A 1K8FA 4JRAC 4U4BA 4XLFA 3WWGA 1O8IA 3PSZA 1QCXA 2J8KA 4Z03A 4XLEA 3NB2A 2X6XA 3RIQA 1IDJA 1PLUA 2O0VA 3B8YA 4C2LA 1AIRA 2NZMA 1O8LA 1DABA 4XLAA 4OJLA 3T9GA 1OFDA 4W8QA 3VSUA 3TH0A 1LLZA 2PYHA 1OOCA 2IQ7A 4URRA 1EZGA 3DU1X 3SQVA 2XTYA 3BH7B 2IOUG 1DBOA 2INUA 4XL9A 2QXZA 3VMVA 1OGOX 1OGMX 5JMCB 5C1CA 4YZXA 2XT4A 2NT6A 2NSTA 3EQOA 3JX8A 2O1DA 1IDKA 4Z05A 2BX6A 4OJOA 1NHCA 1QA1A 4NK6A 3P4GA 4OJ6A 4YEJA 2BSPA 1OFEA 2NTQA 2XTXA 4XORA 5AMVA 1BN8A 3BH6B 1O8FA 2VJJA 1CZFA 2O6WA 2VFPA 3GQ8A 2NTPA 3N6ZA 3GQ9A 4YZAA 4OJ5A 4EW9A 1QQ1A 2W7ZA 2BM7A 4MXNA 2O04A 1OFMA 3AK5A 1O8GA 1O8KA 4PMHA 1L1IA 2VJIA 3GRHA 4XMYA 1QA3A 1CLWA 1O8DA 1EA0A 1DBGA 1PE9A 2X6YA 4XQFA 3SY2A 3GQ7A 4XKWA 2X6WA 1K5CA 2V5IA 1HF2A 2ODLA 3N90A 4I84A 1BHEA 3GQAA 1KCDA 1HG8A 2NT9A 1QJVA 4W8RA 1VBLA 1IA5A 3SYJA 2XT2A 1JTAA 2BM5A 1TYXA 2QYUA 4W8SA 1QRBA 5JLVC 3ZSCA 1GQ8A 3SUCA 1TSPA 3PETA 2VBMA 2XTWA 3H09A 4XOPA 3ML3A 2Z8GA 4OZZA 4XM3A 4XONA 2O17A 5C1EA 4XR6A 1QA2A 2QZAA 4MR0A 1OFLA 3PSSA 2VBKA 1KTWA 2PECA 4XN0A 2J8IA 2NTBA 2QX3A 1TYWA 2UVEA 4YC5A 2INVA 2X3HA 1O8JA 4KH3A 4U49A 4W8TA 4HWVA 3JURA 4YZ0A 4XNFA 1PXZA 4YZQA 2VFMA 1O8MA 1TYVA 2EWEA 1O8EA 4OZYA 5DNSA 1TYUA 1WMRA 4OM9A 1RWRA 2X85A 4V02C 1RMGA 4XLHA 2XC1A 2VBEA 4OJPA 4AVZA 4XOTA 3B90A 2VFOA 3LYCA 1K4ZA 2O0WA 2PYGA 1JRGA 1LLWA 4OPWA 1H80A 3KRGA 1RU4A 3UW0A 1EE6A 1O88A 4YFOA 4YEIA 2NSPA 1IB4A 3VMWA 4XKVA 2G0YA 3VSTA 1WXRA 4XLCA 2F3LA 1XG2A 1O8HA 1LM1A 3SZEA 3LMWA 4YCQA 4YELA 1KCCA 1X0CA 3B4NA 2QY1A 2B0RA 3NAWA 3ZPPA 2VFNA 1QRCA 2BM6A 4YDTA 2YUHA 4XN3A 3VSVA 3EQNA 2VFQA 2UVFA
chains in the Genus database with same CATH topology
4OM9A 1KQ5A 3LJYA 4V02C 2XC1A 2BM4A 4OJPA 1K8FA 3SYJA 4JRAC 2BM5A 3JX8A 2VFOA 1TYXA 1K4ZA 2BX6A 3LYCA 4OPWA 4OJOA 1QRBA 3RIQA 5JLVC 5JMCB 3P4GA 4OJ6A 1QA1A 1TSPA 3PETA 3BH6B 3H09A 1DABA 2G0YA 3ML3A 2VFPA 3N6ZA 4OJLA 1WXRA 1QA2A 2F3LA 4OJ5A 2VFQA 1QQ1A 2W7ZA 2BM7A 3TH0A 3AK5A 3SZEA 2J8IA 1TYWA 1QA3A 1CLWA 2B0RA 4KH3A 2VFNA 3BH7B 2IOUG 1QRCA 2BM6A 2VFMA 2V5IA 1HF2A 1TYVA 2YUHA 3N90A 1TYUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OM9 A;  2XC1 A;  3SYJ A;  2VFO A;  1TYX A;  3RIQ A;  1QA1 A;  1QRB A;  1TSP A;  1TYU A;  3H09 A;  1DAB A;  3ML3 A;  2VFP A;  1WXR A;  1QA2 A;  3TH0 A;  1QQ1 A;  3AK5 A;  3SZE A;  1TYW A;  1QA3 A;  1CLW A;  4KH3 A;  2VFN A;  2IOU G;  1QRC A;  2VFM A;  2V5I A;  1TYV A;  2VFQ A; 
#chains in the Genus database with same CATH topology
 3FY3 A;  1KQ5 A;  3LJY A;  4Z06 A;  2BM4 A;  4NK8 A;  1K8F A;  4JRA C;  4U4B A;  4XLF A;  3WWG A;  1O8I A;  3PSZ A;  1QCX A;  2J8K A;  4Z03 A;  4XLE A;  3NB2 A;  2X6X A;  3RIQ A;  1IDJ A;  1PLU A;  2O0V A;  3B8Y A;  4C2L A;  1AIR A;  2NZM A;  1O8L A;  1DAB A;  4XLA A;  4OJL A;  3T9G A;  1OFD A;  4W8Q A;  3VSU A;  3TH0 A;  1LLZ A;  2PYH A;  1OOC A;  2IQ7 A;  4URR A;  1EZG A;  3DU1 X;  3SQV A;  2XTY A;  3BH7 B;  2IOU G;  1DBO A;  2INU A;  4XL9 A;  2QXZ A;  3VMV A;  1OGO X;  1OGM X;  5JMC B;  5C1C A;  4YZX A;  2XT4 A;  2NT6 A;  2NST A;  3EQO A;  3JX8 A;  2O1D A;  1IDK A;  4Z05 A;  2BX6 A;  4OJO A;  1NHC A;  1QA1 A;  4NK6 A;  3P4G A;  4OJ6 A;  4YEJ A;  2BSP A;  1OFE A;  2NTQ A;  2XTX A;  4XOR A;  5AMV A;  1BN8 A;  3BH6 B;  1O8F A;  2VJJ A;  1CZF A;  2O6W A;  2VFP A;  3GQ8 A;  2NTP A;  3N6Z A;  3GQ9 A;  4YZA A;  4OJ5 A;  4EW9 A;  1QQ1 A;  2W7Z A;  2BM7 A;  4MXN A;  2O04 A;  1OFM A;  3AK5 A;  1O8G A;  1O8K A;  4PMH A;  1L1I A;  2VJI A;  3GRH A;  4XMY A;  1QA3 A;  1CLW A;  1O8D A;  1EA0 A;  1DBG A;  1PE9 A;  2X6Y A;  4XQF A;  3SY2 A;  3GQ7 A;  4XKW A;  2X6W A;  1K5C A;  2V5I A;  1HF2 A;  2ODL A;  3N90 A;  4I84 A;  1BHE A;  3GQA A;  1KCD A;  1HG8 A;  2NT9 A;  1QJV A;  4W8R A;  1VBL A;  1IA5 A;  3SYJ A;  2XT2 A;  1JTA A;  2BM5 A;  1TYX A;  2QYU A;  4W8S A;  1QRB A;  5JLV C;  3ZSC A;  1GQ8 A;  3SUC A;  1TSP A;  3PET A;  2VBM A;  2XTW A;  3H09 A;  4XOP A;  3ML3 A;  2Z8G A;  4OZZ A;  4XM3 A;  4XON A;  2O17 A;  5C1E A;  4XR6 A;  1QA2 A;  2QZA A;  4MR0 A;  1OFL A;  3PSS A;  2VBK A;  1KTW A;  2PEC A;  4XN0 A;  2J8I A;  2NTB A;  2QX3 A;  1TYW A;  2UVE A;  4YC5 A;  2INV A;  2X3H A;  1O8J A;  4KH3 A;  4U49 A;  4W8T A;  4HWV A;  3JUR A;  4YZ0 A;  4XNF A;  1PXZ A;  4YZQ A;  2VFM A;  1O8M A;  1TYV A;  2EWE A;  1O8E A;  4OZY A;  5DNS A;  1TYU A;  1WMR A;  4OM9 A;  1RWR A;  2X85 A;  4V02 C;  1RMG A;  4XLH A;  2XC1 A;  2VBE A;  4OJP A;  4AVZ A;  4XOT A;  3B90 A;  2VFO A;  3LYC A;  1K4Z A;  2O0W A;  2PYG A;  1JRG A;  1LLW A;  4OPW A;  1H80 A;  3KRG A;  1RU4 A;  3UW0 A;  1EE6 A;  1O88 A;  4YFO A;  4YEI A;  2NSP A;  1IB4 A;  3VMW A;  4XKV A;  2G0Y A;  3VST A;  1WXR A;  4XLC A;  2F3L A;  1XG2 A;  1O8H A;  1LM1 A;  3SZE A;  3LMW A;  4YCQ A;  4YEL A;  1KCC A;  1X0C A;  3B4N A;  2QY1 A;  2B0R A;  3NAW A;  3ZPP A;  2VFN A;  1QRC A;  2BM6 A;  4YDT A;  2YUH A;  4XN3 A;  3VSV A;  3EQN A;  2VFQ A;  2UVF A; 
#chains in the Genus database with same CATH homology
 4OM9 A;  1KQ5 A;  3LJY A;  4V02 C;  2XC1 A;  2BM4 A;  4OJP A;  1K8F A;  3SYJ A;  4JRA C;  2BM5 A;  3JX8 A;  2VFO A;  1TYX A;  1K4Z A;  2BX6 A;  3LYC A;  4OPW A;  4OJO A;  1QRB A;  3RIQ A;  5JLV C;  5JMC B;  3P4G A;  4OJ6 A;  1QA1 A;  1TSP A;  3PET A;  3BH6 B;  3H09 A;  1DAB A;  2G0Y A;  3ML3 A;  2VFP A;  3N6Z A;  4OJL A;  1WXR A;  1QA2 A;  2F3L A;  4OJ5 A;  2VFQ A;  1QQ1 A;  2W7Z A;  2BM7 A;  3TH0 A;  3AK5 A;  3SZE A;  2J8I A;  1TYW A;  1QA3 A;  1CLW A;  2B0R A;  4KH3 A;  2VFN A;  3BH7 B;  2IOU G;  1QRC A;  2BM6 A;  2VFM A;  2V5I A;  1HF2 A;  1TYV A;  2YUH A;  3N90 A;  1TYU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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