1QRCA

Tailspike protein, mutant w391a
Total Genus 190
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
190
sequence length
554
structure length
543
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVADGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
molecule keywords TAILSPIKE PROTEIN
publication title Plasticity and steric strain in a parallel beta-helix: rational mutations in the P22 tailspike protein.
pubmed doi rcsb
total genus 190
structure length 543
sequence length 554
ec nomenclature
pdb deposition date 1999-06-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1qrcA00
3RIQA 3ML3A 1WXRA 1CLWA 1DABA 2V5IA 1TYVA 2VFPA 3TH0A 3AK5A 2VFMA 4OM9A 2VFNA 1QQ1A 1QA2A 2VFOA 2XC1A 4KH3A 1QRBA 1TYWA 3H09A 1TSPA 1QA1A 1QA3A 3SZEA 2IOUG 1QRCA 1TYXA 3SYJA 2VFQA 1TYUA
chains in the Genus database with same CATH superfamily
1PXZA 2O0VA 4XLHA 3VSUA 3SUCA 4NK6A 1O8EA 2NTQA 1EA0A 2NZMA 3ZSCA 2O1DA 4W8QA 1O8IA 3AK5A 2O04A 4XLCA 1O8KA 4I84A 2BM4A 2VFNA 4OM9A 3UW0A 1OFMA 2INUA 4W8TA 2NT6A 1OFEA 2O0WA 4PMHA 4Z05A 1RU4A 4XLAA 1QRBA 2NSTA 4YELA 1O8HA 4XKWA 1QA3A 3GQ9A 4C2LA 1AIRA 1EZGA 2F3LA 2UVEA 4YEJA 2X85A 4U49A 1IDJA 4OPWA 3VMWA 2O17A 4OJ6A 4NK8A 3GQAA 4OZZA 2PECA 3LYCA 3ML3A 1LLWA 3RIQA 2XT4A 3TH0A 4OJ5A 3N90A 2NT9A 2BX6A 4XOTA 2UVFA 1O88A 1QCXA 3GQ8A 1IB4A 1O8DA 4OJLA 2G0YA 2W7ZA 1K4ZA 3KRGA 4XORA 1WMRA 4OJPA 2Z8GA 1QQ1A 4XLEA 1VBLA 3PETA 2B0RA 1DBGA 3GQ7A 3LJYA 3JURA 1O8MA 4EW9A 4XONA 4XN0A 3WWGA 2XTXA 4XR6A 1IDKA 3VMVA 2ODLA 1NHCA 2VJJA 1JTAA 2O6WA 3GRHA 2EWEA 1LLZA 1GQ8A 3NB2A 2NTBA 2VBKA 2VFQA 1TYUA 1OGOX 4YFOA 1X0CA 1KQ5A 3SY2A 1WXRA 1KCDA 3P4GA 4XQFA 1DABA 4W8SA 1OFLA 3SQVA 4MR0A 2QYUA 3BH6B 2VJIA 3NAWA 1K8FA 3BH7B 2BM6A 2PYGA 4V02C 3VSTA 2QZAA 4U4BA 2V5IA 2XTYA 2QXZA 2VFMA 4XMYA 1JRGA 1O8GA 3PSSA 2NSPA 4YCQA 5JLVC 1QA2A 1L1IA 2INVA 4XN3A 4XNFA 1O8FA 5DNSA 1KTWA 2BSPA 2J8IA 3VSVA 3H09A 1QJVA 1TSPA 4Z06A 1OFDA 2X6WA 4W8RA 5C1CA 2BM7A 4OZYA 1PE9A 1QRCA 1TYXA 2QY1A 2X6XA 3LMWA 2J8KA 2X3HA 1CZFA 4YEIA 2NTPA 3SYJA 1EE6A 2VBEA 4YZXA 4Z03A 1HF2A 1BN8A 2PYHA 1HG8A 2XT2A 4AVZA 2XTWA 5JMCB 1IA5A 2X6YA 3FY3A 4XOPA 1O8LA 4YDTA 1OOCA 1XG2A 1CLWA 4XM3A 3EQOA 4HWVA 1TYVA 2VFPA 1RMGA 3DU1X 4YZQA 5AMVA 4JRAC 1H80A 4URRA 4XKVA 1O8JA 5C1EA 3T9GA 4YC5A 2VFOA 1KCCA 2VBMA 2XC1A 2YUHA 1BHEA 4KH3A 1DBOA 2IQ7A 1LM1A 1TYWA 4OJOA 4XL9A 3B90A 1QA1A 2QX3A 3B4NA 3N6ZA 3B8YA 3SZEA 3PSZA 2IOUG 3EQNA 4MXNA 4YZ0A 3JX8A 2BM5A 1RWRA 4XLFA 3ZPPA 1K5CA 4YZAA 1OGMX 1PLUA
chains in the Genus database with same CATH topology
1KQ5A 1HF2A 3RIQA 3LYCA 3ML3A 3P4GA 1WXRA 4OJ5A 5JMCB 3N90A 3BH6B 2BX6A 1K8FA 3BH7B 2BM6A 4V02C 1CLWA 4OJLA 2G0YA 2W7ZA 1K4ZA 1DABA 2V5IA 1TYVA 2VFPA 3TH0A 3AK5A 2VFMA 4OJPA 4JRAC 2BM4A 2VFNA 1QQ1A 4OM9A 5JLVC 1QA2A 2VFOA 2XC1A 3PETA 2B0RA 2YUHA 4KH3A 4OJ6A 1QRBA 3LJYA 2J8IA 1TYWA 3H09A 1TSPA 4OJOA 1QA1A 1QA3A 3SZEA 3N6ZA 2BM7A 2F3LA 2IOUG 3JX8A 1QRCA 1TYXA 2BM5A 3SYJA 4OPWA 2VFQA 1TYUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RIQ A;  3ML3 A;  1WXR A;  1CLW A;  1DAB A;  2V5I A;  1TYV A;  2VFP A;  3TH0 A;  3AK5 A;  2VFM A;  4OM9 A;  2VFN A;  1QQ1 A;  1QA2 A;  2VFO A;  2XC1 A;  4KH3 A;  1QRB A;  1TYW A;  3H09 A;  1TSP A;  1QA1 A;  1QA3 A;  3SZE A;  2IOU G;  1QRC A;  1TYX A;  3SYJ A;  2VFQ A;  1TYU A; 
#chains in the Genus database with same CATH topology
 1PXZ A;  2O0V A;  4XLH A;  3VSU A;  3SUC A;  4NK6 A;  1O8E A;  2NTQ A;  1EA0 A;  2NZM A;  3ZSC A;  2O1D A;  4W8Q A;  1O8I A;  3AK5 A;  2O04 A;  4XLC A;  1O8K A;  4I84 A;  2BM4 A;  2VFN A;  4OM9 A;  3UW0 A;  1OFM A;  2INU A;  4W8T A;  2NT6 A;  1OFE A;  2O0W A;  4PMH A;  4Z05 A;  1RU4 A;  4XLA A;  1QRB A;  2NST A;  4YEL A;  1O8H A;  4XKW A;  1QA3 A;  3GQ9 A;  4C2L A;  1AIR A;  1EZG A;  2F3L A;  2UVE A;  4YEJ A;  2X85 A;  4U49 A;  1IDJ A;  4OPW A;  3VMW A;  2O17 A;  4OJ6 A;  4NK8 A;  3GQA A;  4OZZ A;  2PEC A;  3LYC A;  3ML3 A;  1LLW A;  3RIQ A;  2XT4 A;  3TH0 A;  4OJ5 A;  3N90 A;  2NT9 A;  2BX6 A;  4XOT A;  2UVF A;  1O88 A;  1QCX A;  3GQ8 A;  1IB4 A;  1O8D A;  4OJL A;  2G0Y A;  2W7Z A;  1K4Z A;  3KRG A;  4XOR A;  1WMR A;  4OJP A;  2Z8G A;  1QQ1 A;  4XLE A;  1VBL A;  3PET A;  2B0R A;  1DBG A;  3GQ7 A;  3LJY A;  3JUR A;  1O8M A;  4EW9 A;  4XON A;  4XN0 A;  3WWG A;  2XTX A;  4XR6 A;  1IDK A;  3VMV A;  2ODL A;  1NHC A;  2VJJ A;  1JTA A;  2O6W A;  3GRH A;  2EWE A;  1LLZ A;  1GQ8 A;  3NB2 A;  2NTB A;  2VBK A;  2VFQ A;  1TYU A;  1OGO X;  4YFO A;  1X0C A;  1KQ5 A;  3SY2 A;  1WXR A;  1KCD A;  3P4G A;  4XQF A;  1DAB A;  4W8S A;  1OFL A;  3SQV A;  4MR0 A;  2QYU A;  3BH6 B;  2VJI A;  3NAW A;  1K8F A;  3BH7 B;  2BM6 A;  2PYG A;  4V02 C;  3VST A;  2QZA A;  4U4B A;  2V5I A;  2XTY A;  2QXZ A;  2VFM A;  4XMY A;  1JRG A;  1O8G A;  3PSS A;  2NSP A;  4YCQ A;  5JLV C;  1QA2 A;  1L1I A;  2INV A;  4XN3 A;  4XNF A;  1O8F A;  5DNS A;  1KTW A;  2BSP A;  2J8I A;  3VSV A;  3H09 A;  1QJV A;  1TSP A;  4Z06 A;  1OFD A;  2X6W A;  4W8R A;  5C1C A;  2BM7 A;  4OZY A;  1PE9 A;  1QRC A;  1TYX A;  2QY1 A;  2X6X A;  3LMW A;  2J8K A;  2X3H A;  1CZF A;  4YEI A;  2NTP A;  3SYJ A;  1EE6 A;  2VBE A;  4YZX A;  4Z03 A;  1HF2 A;  1BN8 A;  2PYH A;  1HG8 A;  2XT2 A;  4AVZ A;  2XTW A;  5JMC B;  1IA5 A;  2X6Y A;  3FY3 A;  4XOP A;  1O8L A;  4YDT A;  1OOC A;  1XG2 A;  1CLW A;  4XM3 A;  3EQO A;  4HWV A;  1TYV A;  2VFP A;  1RMG A;  3DU1 X;  4YZQ A;  5AMV A;  4JRA C;  1H80 A;  4URR A;  4XKV A;  1O8J A;  5C1E A;  3T9G A;  4YC5 A;  2VFO A;  1KCC A;  2VBM A;  2XC1 A;  2YUH A;  1BHE A;  4KH3 A;  1DBO A;  2IQ7 A;  1LM1 A;  1TYW A;  4OJO A;  4XL9 A;  3B90 A;  1QA1 A;  2QX3 A;  3B4N A;  3N6Z A;  3B8Y A;  3SZE A;  3PSZ A;  2IOU G;  3EQN A;  4MXN A;  4YZ0 A;  3JX8 A;  2BM5 A;  1RWR A;  4XLF A;  3ZPP A;  1K5C A;  4YZA A;  1OGM X;  1PLU A; 
#chains in the Genus database with same CATH homology
 1KQ5 A;  1HF2 A;  3RIQ A;  3LYC A;  3ML3 A;  3P4G A;  1WXR A;  4OJ5 A;  5JMC B;  3N90 A;  3BH6 B;  2BX6 A;  1K8F A;  3BH7 B;  2BM6 A;  4V02 C;  1CLW A;  4OJL A;  2G0Y A;  2W7Z A;  1K4Z A;  1DAB A;  2V5I A;  1TYV A;  2VFP A;  3TH0 A;  3AK5 A;  2VFM A;  4OJP A;  4JRA C;  2BM4 A;  2VFN A;  1QQ1 A;  4OM9 A;  5JLV C;  1QA2 A;  2VFO A;  2XC1 A;  3PET A;  2B0R A;  2YUH A;  4KH3 A;  4OJ6 A;  1QRB A;  3LJY A;  2J8I A;  1TYW A;  3H09 A;  1TSP A;  4OJO A;  1QA1 A;  1QA3 A;  3SZE A;  3N6Z A;  2BM7 A;  2F3L A;  2IOU G;  3JX8 A;  1QRC A;  1TYX A;  2BM5 A;  3SYJ A;  4OPW A;  2VFQ A;  1TYU A; 
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similar chains in the pdb database (?% sequence similarity)

 
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