1QRCA

Tailspike protein, mutant w391a
Total Genus 190
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
190
sequence length
554
structure length
543
Chain Sequence
b'YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVADGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords TAILSPIKE PROTEIN
publication title Plasticity and steric strain in a parallel beta-helix: rational mutations in the P22 tailspike protein.
pubmed doi rcsb
molecule tags Viral protein
total genus 190
structure length 543
sequence length 554
ec nomenclature
pdb deposition date 1999-06-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1qrcA00
3RIQA 3SYJA 1TYVA 3H09A 1TYXA 3SZEA 1TSPA 1WXRA 4OM9A 1QRBA 2VFQA 1QA3A 2IOUG 2VFNA 4KH3A 1CLWA 2VFPA 2VFOA 1DABA 1TYWA 2V5IA 2VFMA 1TYUA 1QRCA 3TH0A 1QQ1A 1QA2A 2XC1A 3AK5A 3ML3A 1QA1A
chains in the Genus database with same CATH superfamily
4I84A 4YZAA 1XG2A 1DBOA 4OPWA 1IDJA 4OJOA 4YEIA 2BM6A 4XR6A 4XLEA 1EA0A 4XKWA 4XONA 1OGMX 4YZXA 1TSPA 2VJJA 1IA5A 3VSVA 2VBEA 2VFQA 3JURA 2IOUG 2XT2A 4OZZA 5DNSA 5C1EA 2G0YA 4XLAA 4KH3A 1OFDA 1OFLA 3SUCA 2PECA 2XTWA 1BHEA 3GQ8A 1WMRA 5JLVC 2BM4A 1GQ8A 2X6WA 3TH0A 1HF2A 3PETA 1RU4A 1QQ1A 3BH7B 4Z03A 1KQ5A 3EQNA 2ODLA 4JRAC 1OFEA 1EE6A 2UVFA 3T9GA 1IB4A 4MR0A 2O0WA 3VMWA 2F3LA 3BH6B 3B90A 3ML3A 2O0VA 4HWVA 4U49A 4YZ0A 1KTWA 3JX8A 3EQOA 3GRHA 4OM9A 4Z05A 1K5CA 1K8FA 4V02C 1QA3A 4C2LA 1PLUA 2BX6A 2NTQA 1LM1A 3VMVA 1IDKA 3NAWA 3N90A 5AMVA 4AVZA 1X0CA 3GQ7A 4XLHA 1O8IA 2B0RA 1QRCA 2NSPA 4OJPA 4YEJA 1KCDA 4OJ6A 1QA2A 1OOCA 2QY1A 3SY2A 1BN8A 3B4NA 1O8GA 4XQFA 2QXZA 4YZQA 1EZGA 4EW9A 1RMGA 2BSPA 4XM3A 3SYJA 4URRA 4U4BA 4XNFA 3H09A 2O1DA 2IQ7A 2QZAA 1AIRA 1H80A 2O17A 4W8RA 1TYXA 1CZFA 1VBLA 3P4GA 2Z8GA 2INVA 2J8KA 2UVEA 4YFOA 1DBGA 2NTBA 1O8LA 1WXRA 1QRBA 1QCXA 3ZSCA 3PSZA 4W8TA 1LLWA 2BM7A 1OGOX 2EWEA 2INUA 1QJVA 3NB2A 3WWGA 4NK8A 2O6WA 2VFOA 2X6YA 3KRGA 1DABA 3GQ9A 1LLZA 2V5IA 4OZYA 4YC5A 2VFMA 3UW0A 4XLCA 1TYUA 3FY3A 4NK6A 4YELA 2YUHA 2X3HA 3N6ZA 2PYHA 3LJYA 4XN0A 3DU1X 2NSTA 2QYUA 2O04A 4XLFA 4XORA 3VSTA 1QA1A 4W8QA 1NHCA 3LYCA 4XL9A 4YCQA 1O8MA 2NTPA 3RIQA 1TYVA 1JTAA 2NT9A 2XTXA 2J8IA 3PSSA 3ZPPA 3LMWA 2VJIA 2X85A 3SZEA 4XMYA 5C1CA 4XOTA 2W7ZA 4MXNA 4PMHA 2VBKA 4YDTA 1HG8A 1O8DA 1OFMA 1RWRA 2XT4A 5JMCB 1JRGA 2QX3A 2VFNA 1K4ZA 4OJLA 1CLWA 4OJ5A 4W8SA 2XTYA 2VBMA 2VFPA 2NZMA 1O88A 1L1IA 1TYWA 1PE9A 2X6XA 1O8FA 4XN3A 3SQVA 1PXZA 2PYGA 4XKVA 1KCCA 3VSUA 1O8EA 1O8JA 2XC1A 3GQAA 3AK5A 1O8HA 2NT6A 2BM5A 3B8YA 1O8KA 4XOPA 4Z06A
chains in the Genus database with same CATH topology
3LYCA 3RIQA 3SYJA 1TYVA 4OPWA 3H09A 4OJOA 2BM6A 2J8IA 2F3LA 3BH6B 1TYXA 3ML3A 3SZEA 3P4GA 1TSPA 3JX8A 2W7ZA 1WXRA 4OM9A 1QRBA 1K8FA 2VFQA 4V02C 1QA3A 2IOUG 5JMCB 2G0YA 2BX6A 2BM7A 2VFNA 4KH3A 1K4ZA 4OJLA 1CLWA 4OJ5A 2VFPA 3N90A 2VFOA 1DABA 1TYWA 2V5IA 2B0RA 2VFMA 5JLVC 1TYUA 2BM4A 1QRCA 4OJPA 2YUHA 3TH0A 1HF2A 3PETA 3BH7B 1QQ1A 3N6ZA 3LJYA 2XC1A 4OJ6A 1KQ5A 1QA2A 3AK5A 4JRAC 2BM5A 1QA1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RIQ A;  3SYJ A;  1TYV A;  3H09 A;  1TYX A;  3SZE A;  1TSP A;  1WXR A;  4OM9 A;  1QRB A;  2VFQ A;  1QA3 A;  2IOU G;  2VFN A;  4KH3 A;  1CLW A;  2VFP A;  2VFO A;  1DAB A;  1TYW A;  2V5I A;  2VFM A;  1TYU A;  1QRC A;  3TH0 A;  1QQ1 A;  1QA2 A;  2XC1 A;  3AK5 A;  3ML3 A;  1QA1 A; 
#chains in the Genus database with same CATH topology
 4I84 A;  4YZA A;  1XG2 A;  1DBO A;  4OPW A;  1IDJ A;  4OJO A;  4YEI A;  2BM6 A;  4XR6 A;  4XLE A;  1EA0 A;  4XKW A;  4XON A;  1OGM X;  4YZX A;  1TSP A;  2VJJ A;  1IA5 A;  3VSV A;  2VBE A;  2VFQ A;  3JUR A;  2IOU G;  2XT2 A;  4OZZ A;  5DNS A;  5C1E A;  2G0Y A;  4XLA A;  4KH3 A;  1OFD A;  1OFL A;  3SUC A;  2PEC A;  2XTW A;  1BHE A;  3GQ8 A;  1WMR A;  5JLV C;  2BM4 A;  1GQ8 A;  2X6W A;  3TH0 A;  1HF2 A;  3PET A;  1RU4 A;  1QQ1 A;  3BH7 B;  4Z03 A;  1KQ5 A;  3EQN A;  2ODL A;  4JRA C;  1OFE A;  1EE6 A;  2UVF A;  3T9G A;  1IB4 A;  4MR0 A;  2O0W A;  3VMW A;  2F3L A;  3BH6 B;  3B90 A;  3ML3 A;  2O0V A;  4HWV A;  4U49 A;  4YZ0 A;  1KTW A;  3JX8 A;  3EQO A;  3GRH A;  4OM9 A;  4Z05 A;  1K5C A;  1K8F A;  4V02 C;  1QA3 A;  4C2L A;  1PLU A;  2BX6 A;  2NTQ A;  1LM1 A;  3VMV A;  1IDK A;  3NAW A;  3N90 A;  5AMV A;  4AVZ A;  1X0C A;  3GQ7 A;  4XLH A;  1O8I A;  2B0R A;  1QRC A;  2NSP A;  4OJP A;  4YEJ A;  1KCD A;  4OJ6 A;  1QA2 A;  1OOC A;  2QY1 A;  3SY2 A;  1BN8 A;  3B4N A;  1O8G A;  4XQF A;  2QXZ A;  4YZQ A;  1EZG A;  4EW9 A;  1RMG A;  2BSP A;  4XM3 A;  3SYJ A;  4URR A;  4U4B A;  4XNF A;  3H09 A;  2O1D A;  2IQ7 A;  2QZA A;  1AIR A;  1H80 A;  2O17 A;  4W8R A;  1TYX A;  1CZF A;  1VBL A;  3P4G A;  2Z8G A;  2INV A;  2J8K A;  2UVE A;  4YFO A;  1DBG A;  2NTB A;  1O8L A;  1WXR A;  1QRB A;  1QCX A;  3ZSC A;  3PSZ A;  4W8T A;  1LLW A;  2BM7 A;  1OGO X;  2EWE A;  2INU A;  1QJV A;  3NB2 A;  3WWG A;  4NK8 A;  2O6W A;  2VFO A;  2X6Y A;  3KRG A;  1DAB A;  3GQ9 A;  1LLZ A;  2V5I A;  4OZY A;  4YC5 A;  2VFM A;  3UW0 A;  4XLC A;  1TYU A;  3FY3 A;  4NK6 A;  4YEL A;  2YUH A;  2X3H A;  3N6Z A;  2PYH A;  3LJY A;  4XN0 A;  3DU1 X;  2NST A;  2QYU A;  2O04 A;  4XLF A;  4XOR A;  3VST A;  1QA1 A;  4W8Q A;  1NHC A;  3LYC A;  4XL9 A;  4YCQ A;  1O8M A;  2NTP A;  3RIQ A;  1TYV A;  1JTA A;  2NT9 A;  2XTX A;  2J8I A;  3PSS A;  3ZPP A;  3LMW A;  2VJI A;  2X85 A;  3SZE A;  4XMY A;  5C1C A;  4XOT A;  2W7Z A;  4MXN A;  4PMH A;  2VBK A;  4YDT A;  1HG8 A;  1O8D A;  1OFM A;  1RWR A;  2XT4 A;  5JMC B;  1JRG A;  2QX3 A;  2VFN A;  1K4Z A;  4OJL A;  1CLW A;  4OJ5 A;  4W8S A;  2XTY A;  2VBM A;  2VFP A;  2NZM A;  1O88 A;  1L1I A;  1TYW A;  1PE9 A;  2X6X A;  1O8F A;  4XN3 A;  3SQV A;  1PXZ A;  2PYG A;  4XKV A;  1KCC A;  3VSU A;  1O8E A;  1O8J A;  2XC1 A;  3GQA A;  3AK5 A;  1O8H A;  2NT6 A;  2BM5 A;  3B8Y A;  1O8K A;  4XOP A;  4Z06 A; 
#chains in the Genus database with same CATH homology
 3LYC A;  3RIQ A;  3SYJ A;  1TYV A;  4OPW A;  3H09 A;  4OJO A;  2BM6 A;  2J8I A;  2F3L A;  3BH6 B;  1TYX A;  3ML3 A;  3SZE A;  3P4G A;  1TSP A;  3JX8 A;  2W7Z A;  1WXR A;  4OM9 A;  1QRB A;  1K8F A;  2VFQ A;  4V02 C;  1QA3 A;  2IOU G;  5JMC B;  2G0Y A;  2BX6 A;  2BM7 A;  2VFN A;  4KH3 A;  1K4Z A;  4OJL A;  1CLW A;  4OJ5 A;  2VFP A;  3N90 A;  2VFO A;  1DAB A;  1TYW A;  2V5I A;  2B0R A;  2VFM A;  5JLV C;  1TYU A;  2BM4 A;  1QRC A;  4OJP A;  2YUH A;  3TH0 A;  1HF2 A;  3PET A;  3BH7 B;  1QQ1 A;  3N6Z A;  3LJY A;  2XC1 A;  4OJ6 A;  1KQ5 A;  1QA2 A;  3AK5 A;  4JRA C;  2BM5 A;  1QA1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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