1QRCA

Tailspike protein, mutant w391a
Total Genus 190
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
190
sequence length
554
structure length
543
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVADGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords TAILSPIKE PROTEIN
publication title Plasticity and steric strain in a parallel beta-helix: rational mutations in the P22 tailspike protein.
pubmed doi rcsb
molecule tags Viral protein
total genus 190
structure length 543
sequence length 554
ec nomenclature
pdb deposition date 1999-06-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1qrcA00
1TYUA 3AK5A 1QQ1A 2XC1A 4OM9A 1QA1A 2IOUG 2VFPA 1TYWA 3RIQA 2VFQA 3ML3A 3SZEA 3H09A 1DABA 1QRBA 1WXRA 3SYJA 2VFOA 3TH0A 1TYVA 1QA2A 2VFNA 1CLWA 1QA3A 1QRCA 1TSPA 2V5IA 4KH3A 1TYXA 2VFMA
chains in the Genus database with same CATH superfamily
2XTWA 3B4NA 1EE6A 4OJ6A 4YDTA 1QQ1A 4OJPA 4OM9A 5C1CA 1QA1A 1H80A 1QJVA 1AIRA 1O8MA 2BM4A 4XQFA 3VMVA 3GQAA 2J8KA 2VFPA 4MR0A 2X6WA 4HWVA 1NHCA 3ML3A 3SZEA 1X0CA 3UW0A 2BM5A 4YELA 1HG8A 2NTBA 1DBOA 2QXZA 3P4GA 2XTYA 2J8IA 2PYGA 4XR6A 3LYCA 4OPWA 2Z8GA 2INUA 3EQNA 2UVEA 4PMHA 2O0VA 1OFLA 2QZAA 3EQOA 2O6WA 2QX3A 5DNSA 3GQ8A 2ODLA 1RWRA 1TYUA 2VBEA 4V02C 4URRA 3NAWA 1JTAA 4OJOA 4W8RA 4C2LA 3KRGA 4JRAC 1WMRA 3GRHA 4YZQA 1O8JA 3BH7B 3AK5A 2O1DA 4Z05A 1IA5A 1O8LA 2VBMA 2BM6A 2X6YA 4W8QA 4XONA 2IOUG 1K4ZA 1O88A 4XOTA 2NZMA 2NT9A 2F3LA 2INVA 2VFQA 3GQ7A 2VBKA 1PE9A 1KTWA 3ZPPA 1OFDA 1O8DA 3H09A 4W8TA 4YCQA 2W7ZA 4AVZA 1WXRA 2NTPA 1DBGA 2NTQA 1OFMA 2YUHA 3TH0A 3ZSCA 2VFNA 4I84A 1K8FA 2NSPA 1KQ5A 2XT4A 4XORA 1IDKA 3SUCA 1GQ8A 1OGMX 2O04A 1O8GA 3FY3A 1O8KA 1TSPA 3JURA 5AMVA 1OGOX 1RU4A 3VSUA 1LM1A 4XLAA 1K5CA 1BHEA 1VBLA 3DU1X 2X3HA 4OZYA 4MXNA 4Z03A 3N6ZA 3NB2A 1PXZA 1TYWA 3RIQA 4YEJA 3VSVA 4XLHA 3PSZA 4YFOA 4XNFA 1OOCA 1RMGA 2X85A 4OZZA 3PSSA 2UVFA 2XT2A 1O8EA 1PLUA 2VFOA 3SYJA 4YZ0A 3LMWA 2QYUA 2X6XA 4XLFA 2VJIA 1KCDA 3N90A 1O8HA 4XN3A 4XL9A 4XM3A 1QA3A 1EA0A 1O8IA 3GQ9A 2V5IA 3JX8A 1TYXA 3B8YA 4XKVA 4YZAA 4NK6A 1EZGA 5C1EA 4YEIA 1LLZA 2NSTA 4OJLA 4YC5A 3SY2A 2BM7A 4Z06A 1OFEA 5JLVC 3T9GA 3WWGA 4XLEA 2XC1A 4U4BA 1LLWA 2XTXA 1CZFA 4XN0A 4XLCA 1XG2A 4W8SA 1O8FA 1IB4A 3VSTA 1KCCA 1JRGA 1DABA 1QRBA 1QCXA 4U49A 4XKWA 3PETA 4NK8A 1BN8A 2NT6A 2BSPA 2IQ7A 1TYVA 4EW9A 1QA2A 2O17A 4YZXA 3VMWA 2EWEA 2VJJA 3LJYA 4XOPA 1L1IA 2G0YA 3BH6B 3B90A 1CLWA 1IDJA 2O0WA 2PYHA 1QRCA 2B0RA 4XMYA 5JMCB 4KH3A 3SQVA 2VFMA 2BX6A 2QY1A 1HF2A 2PECA 4OJ5A
chains in the Genus database with same CATH topology
1TYUA 4OJLA 4V02C 4OJOA 4OJ6A 2BM7A 1QQ1A 4JRAC 5JLVC 3AK5A 3BH7B 4OJPA 2XC1A 4OM9A 1QA1A 3N6ZA 2BM6A 2BM4A 2IOUG 1K4ZA 2VFPA 1TYWA 2F3LA 2VFQA 3RIQA 3ML3A 3SZEA 3H09A 1DABA 1QRBA 2W7ZA 1WXRA 3PETA 3SYJA 2BM5A 2VFOA 2YUHA 1TYVA 3TH0A 1QA2A 2VFNA 1K8FA 3LJYA 1KQ5A 3P4GA 2G0YA 2J8IA 3BH6B 3LYCA 4OPWA 3N90A 1CLWA 5JMCB 1QA3A 1QRCA 1TSPA 2B0RA 2V5IA 3JX8A 1TYXA 2BX6A 2VFMA 4KH3A 1HF2A 4OJ5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TYU A;  3AK5 A;  1QQ1 A;  2XC1 A;  4OM9 A;  1QA1 A;  2IOU G;  2VFP A;  1TYW A;  3RIQ A;  2VFQ A;  3ML3 A;  3SZE A;  3H09 A;  1DAB A;  1QRB A;  1WXR A;  3SYJ A;  2VFO A;  3TH0 A;  1TYV A;  1QA2 A;  2VFN A;  1CLW A;  1QA3 A;  1QRC A;  1TSP A;  2V5I A;  4KH3 A;  1TYX A;  2VFM A; 
#chains in the Genus database with same CATH topology
 2XTW A;  3B4N A;  1EE6 A;  4OJ6 A;  4YDT A;  1QQ1 A;  4OJP A;  4OM9 A;  5C1C A;  1QA1 A;  1H80 A;  1QJV A;  1AIR A;  1O8M A;  2BM4 A;  4XQF A;  3VMV A;  3GQA A;  2J8K A;  2VFP A;  4MR0 A;  2X6W A;  4HWV A;  1NHC A;  3ML3 A;  3SZE A;  1X0C A;  3UW0 A;  2BM5 A;  4YEL A;  1HG8 A;  2NTB A;  1DBO A;  2QXZ A;  3P4G A;  2XTY A;  2J8I A;  2PYG A;  4XR6 A;  3LYC A;  4OPW A;  2Z8G A;  2INU A;  3EQN A;  2UVE A;  4PMH A;  2O0V A;  1OFL A;  2QZA A;  3EQO A;  2O6W A;  2QX3 A;  5DNS A;  3GQ8 A;  2ODL A;  1RWR A;  1TYU A;  2VBE A;  4V02 C;  4URR A;  3NAW A;  1JTA A;  4OJO A;  4W8R A;  4C2L A;  3KRG A;  4JRA C;  1WMR A;  3GRH A;  4YZQ A;  1O8J A;  3BH7 B;  3AK5 A;  2O1D A;  4Z05 A;  1IA5 A;  1O8L A;  2VBM A;  2BM6 A;  2X6Y A;  4W8Q A;  4XON A;  2IOU G;  1K4Z A;  1O88 A;  4XOT A;  2NZM A;  2NT9 A;  2F3L A;  2INV A;  2VFQ A;  3GQ7 A;  2VBK A;  1PE9 A;  1KTW A;  3ZPP A;  1OFD A;  1O8D A;  3H09 A;  4W8T A;  4YCQ A;  2W7Z A;  4AVZ A;  1WXR A;  2NTP A;  1DBG A;  2NTQ A;  1OFM A;  2YUH A;  3TH0 A;  3ZSC A;  2VFN A;  4I84 A;  1K8F A;  2NSP A;  1KQ5 A;  2XT4 A;  4XOR A;  1IDK A;  3SUC A;  1GQ8 A;  1OGM X;  2O04 A;  1O8G A;  3FY3 A;  1O8K A;  1TSP A;  3JUR A;  5AMV A;  1OGO X;  1RU4 A;  3VSU A;  1LM1 A;  4XLA A;  1K5C A;  1BHE A;  1VBL A;  3DU1 X;  2X3H A;  4OZY A;  4MXN A;  4Z03 A;  3N6Z A;  3NB2 A;  1PXZ A;  1TYW A;  3RIQ A;  4YEJ A;  3VSV A;  4XLH A;  3PSZ A;  4YFO A;  4XNF A;  1OOC A;  1RMG A;  2X85 A;  4OZZ A;  3PSS A;  2UVF A;  2XT2 A;  1O8E A;  1PLU A;  2VFO A;  3SYJ A;  4YZ0 A;  3LMW A;  2QYU A;  2X6X A;  4XLF A;  2VJI A;  1KCD A;  3N90 A;  1O8H A;  4XN3 A;  4XL9 A;  4XM3 A;  1QA3 A;  1EA0 A;  1O8I A;  3GQ9 A;  2V5I A;  3JX8 A;  1TYX A;  3B8Y A;  4XKV A;  4YZA A;  4NK6 A;  1EZG A;  5C1E A;  4YEI A;  1LLZ A;  2NST A;  4OJL A;  4YC5 A;  3SY2 A;  2BM7 A;  4Z06 A;  1OFE A;  5JLV C;  3T9G A;  3WWG A;  4XLE A;  2XC1 A;  4U4B A;  1LLW A;  2XTX A;  1CZF A;  4XN0 A;  4XLC A;  1XG2 A;  4W8S A;  1O8F A;  1IB4 A;  3VST A;  1KCC A;  1JRG A;  1DAB A;  1QRB A;  1QCX A;  4U49 A;  4XKW A;  3PET A;  4NK8 A;  1BN8 A;  2NT6 A;  2BSP A;  2IQ7 A;  1TYV A;  4EW9 A;  1QA2 A;  2O17 A;  4YZX A;  3VMW A;  2EWE A;  2VJJ A;  3LJY A;  4XOP A;  1L1I A;  2G0Y A;  3BH6 B;  3B90 A;  1CLW A;  1IDJ A;  2O0W A;  2PYH A;  1QRC A;  2B0R A;  4XMY A;  5JMC B;  4KH3 A;  3SQV A;  2VFM A;  2BX6 A;  2QY1 A;  1HF2 A;  2PEC A;  4OJ5 A; 
#chains in the Genus database with same CATH homology
 1TYU A;  4OJL A;  4V02 C;  4OJO A;  4OJ6 A;  2BM7 A;  1QQ1 A;  4JRA C;  5JLV C;  3AK5 A;  3BH7 B;  4OJP A;  2XC1 A;  4OM9 A;  1QA1 A;  3N6Z A;  2BM6 A;  2BM4 A;  2IOU G;  1K4Z A;  2VFP A;  1TYW A;  2F3L A;  2VFQ A;  3RIQ A;  3ML3 A;  3SZE A;  3H09 A;  1DAB A;  1QRB A;  2W7Z A;  1WXR A;  3PET A;  3SYJ A;  2BM5 A;  2VFO A;  2YUH A;  1TYV A;  3TH0 A;  1QA2 A;  2VFN A;  1K8F A;  3LJY A;  1KQ5 A;  3P4G A;  2G0Y A;  2J8I A;  3BH6 B;  3LYC A;  4OPW A;  3N90 A;  1CLW A;  5JMC B;  1QA3 A;  1QRC A;  1TSP A;  2B0R A;  2V5I A;  3JX8 A;  1TYX A;  2BX6 A;  2VFM A;  4KH3 A;  1HF2 A;  4OJ5 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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