1CZFA

Endo-polygalacturonase ii from aspergillus niger
Total Genus 134
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
134
sequence length
335
structure length
335
Chain Sequence
DSCTFTTAAAAKAGKAKCSTITLNNIEVPAGTTLDLTGLTSGTKVIFEGTTTFQYEEWAGPLISMSGEHITVTGASGHLINCDGARWWDGKGTSGKKKPKFFYAHGLDSSSITGLNIKNTPLMAFSVQANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSGENIWFTGGTCIGGHGLSIGSVGDRSNNVVKNVTIEHSTVSNSENAVRIKTISGATGSVSEITYSNIVMSGISDYGVVIQQDYEDGKPTGKPTNGVTIQDVKLESVTGSVDSGATEIYLLCGSGSCSDWTWDDVKVTGGKKSTACKNFPSVASC
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords POLYGALACTURONASE II
publication title 1.68-A crystal structure of endopolygalacturonase II from Aspergillus niger and identification of active site residues by site-directed mutagenesis.
pubmed doi rcsb
molecule tags Hydrolase
total genus 134
structure length 335
sequence length 335
chains with identical sequence B
ec nomenclature ec 3.2.1.15: Endo-polygalacturonase.
pdb deposition date 1999-09-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00295 Glyco_hydro_28 Glycosyl hydrolases family 28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1czfA00
1PXZA 1H80A 1IDKA 3UW0A 2PYGA 2INUA 1O8KA 4OZYA 4XNFA 4URRA 4W8RA 2VJJA 4YZQA 1NHCA 2IQ7A 1RMGA 1RWRA 1O8MA 1O8EA 4XLEA 4W8SA 4I84A 2NT9A 3SUCA 2O04A 1OFMA 3LMWA 1KTWA 4Z06A 3VSTA 1EE6A 1GQ8A 1O8LA 3B4NA 3EQNA 4W8QA 2QY1A 1IB4A 4XLAA 4OJLA 1X0CA 4XOTA 4XONA 3VSUA 4XL9A 4OJ5A 3GRHA 2NTPA 4C2LA 4XLFA 3B90A 4XKVA 4XKWA 1CZFA 4XM3A 1BN8A 4U4BA 1KCCA 3EQOA 4XR6A 1O8HA 2NTBA 3GQ9A 4XN3A 4XORA 5C1CA 2VBEA 2Z8GA 3JURA 1BHEA 2O0VA 1RU4A 1QCXA 5C1EA 1O8FA 2EWEA 2BSPA 2NSTA 1AIRA 4YZAA 2QX3A 2VBKA 1XG2A 1O8DA 2NZMA 4OJOA 4OJPA 3VMVA 1JRGA 2PYHA 4XMYA 2NTQA 1IA5A 2ODLA 1DBOA 1VBLA 3B8YA 3GQAA 4NK6A 1KCDA 1PLUA 4XLHA 2NSPA 1HG8A 4W8TA 2O0WA 4XN0A 1JTAA 4OZZA 4YELA 2PECA 3FY3A 1PE9A 4EW9A 2X6XA 2X6YA 4NK8A 4YZXA 2X3HA 5AMVA 2X85A 3T9GA 3VSVA 4AVZA 2VBMA 1WMRA 4MXNA 4YZ0A 4U49A 2X6WA 2O17A 1OFLA 3ZSCA 1QJVA 1IDJA 3WWGA 1DBGA 2NT6A 3VMWA 3ZPPA 1O8IA 4MR0A 4Z03A 3GQ7A 3KRGA 4XLCA 1O88A 2UVFA 2O1DA 1K5CA 4XOPA 2UVEA 2QXZA 4XQFA 1O8JA 3GQ8A 1OGOX 4OJ6A 1O8GA 2VJIA 4YEJA 1OOCA 1OGMX 4Z05A 2INVA 4PMHA 4HWVA
chains in the Genus database with same CATH superfamily
1HF2A 3RIQA 1PXZA 1QQ1A 1TYWA 1H80A 3DU1X 1IDKA 3UW0A 2PYGA 1L1IA 2INUA 1O8KA 4OZYA 4XNFA 4URRA 4W8RA 2VJJA 4YZQA 1NHCA 2IQ7A 1RMGA 1RWRA 1O8MA 2V5IA 1EA0A 2XTYA 1O8EA 3N90A 4XLEA 3PSSA 2BM7A 3N6ZA 4W8SA 2J8KA 2NT9A 4I84A 3SUCA 3SZEA 2O04A 1OFMA 3LMWA 1KTWA 4YC5A 4Z06A 1EE6A 1GQ8A 2W7ZA 1O8LA 1TSPA 1LLWA 3B4NA 3EQNA 4W8QA 2QY1A 3ML3A 3PETA 4XLAA 1IB4A 4OJLA 1X0CA 4XOTA 4XONA 3VSUA 3LYCA 4XL9A 4OJ5A 3GRHA 2NTPA 4C2LA 3TH0A 4XLFA 3B90A 4XKVA 1WXRA 4XKWA 1TYVA 2O6WA 1OFEA 3VSTA 1CZFA 4XM3A 1K4ZA 1BN8A 1KQ5A 4U4BA 5JLVC 1KCCA 3NB2A 2BM4A 3H09A 3EQOA 4XR6A 1LLZA 1O8HA 2NTBA 3GQ9A 4XN3A 2QZAA 4XORA 5C1CA 3SQVA 2VBEA 2Z8GA 3JURA 1BHEA 2O0VA 4YFOA 1OFDA 1RU4A 5JMCB 2BX6A 1QCXA 5C1EA 2IOUG 1O8FA 2J8IA 2EWEA 4YCQA 2BSPA 2NSTA 1TYXA 1AIRA 2XT4A 4YZAA 2QX3A 2VBKA 3BH7B 1XG2A 1O8DA 2BM6A 3P4GA 1CLWA 2NZMA 1QA1A 4OJOA 2YUHA 4OJPA 3VMVA 1JRGA 2PYHA 4XMYA 2NTQA 1IA5A 3AK5A 2ODLA 1DBOA 2XT2A 2BM5A 1VBLA 2VFQA 1QRBA 3B8YA 3GQAA 4NK6A 1KCDA 4V02C 1PLUA 4XLHA 2NSPA 1HG8A 4W8TA 4KH3A 2O0WA 4XN0A 1JTAA 1LM1A 2VFMA 4OZZA 4YELA 2PECA 2QYUA 3FY3A 1PE9A 3JX8A 3LJYA 4EW9A 2X6XA 2X6YA 4NK8A 1TYUA 4YZXA 2X3HA 2B0RA 5AMVA 2X85A 3BH6B 3T9GA 3VSVA 2VBMA 4AVZA 4OM9A 1WMRA 5DNSA 4MXNA 4YZ0A 4U49A 2VFPA 2X6WA 2O17A 1OFLA 2F3LA 3ZSCA 1QJVA 1IDJA 4YEIA 3WWGA 1DBGA 2NT6A 4JRAC 4YDTA 3VMWA 1K8FA 1O8IA 3ZPPA 4MR0A 3PSZA 4Z03A 2XTXA 1QRCA 3GQ7A 2XC1A 4OPWA 3SY2A 3KRGA 4XLCA 1O88A 2UVFA 1QA2A 2O1DA 1K5CA 4XOPA 3SYJA 2UVEA 2QXZA 2G0YA 2VFNA 3NAWA 4XQFA 1O8JA 3GQ8A 1OGOX 4OJ6A 1DABA 1O8GA 1EZGA 2VJIA 2XTWA 4YEJA 1OOCA 1OGMX 4Z05A 2INVA 2VFOA 4PMHA 1QA3A 4HWVA
chains in the Genus database with same CATH topology
1PXZA 1H80A 1IDKA 3UW0A 2PYGA 2INUA 1O8KA 4OZYA 4XNFA 4URRA 4W8RA 2VJJA 4YZQA 1NHCA 2IQ7A 1RMGA 1RWRA 1O8MA 1O8EA 4XLEA 4W8SA 4I84A 2NT9A 3SUCA 2O04A 1OFMA 3LMWA 1KTWA 4Z06A 3VSTA 1EE6A 1GQ8A 1O8LA 3B4NA 3EQNA 4W8QA 2QY1A 1IB4A 4XLAA 4OJLA 1X0CA 4XOTA 4XONA 3VSUA 4XL9A 4OJ5A 3GRHA 2NTPA 4C2LA 4XLFA 3B90A 4XKVA 4XKWA 1CZFA 4XM3A 1BN8A 4U4BA 1KCCA 3EQOA 4XR6A 1O8HA 2NTBA 3GQ9A 4XN3A 4XORA 5C1CA 2VBEA 2Z8GA 3JURA 1BHEA 2O0VA 1RU4A 1QCXA 5C1EA 1O8FA 2EWEA 2BSPA 2NSTA 1AIRA 4YZAA 2QX3A 2VBKA 1XG2A 1O8DA 2NZMA 4OJOA 4OJPA 3VMVA 1JRGA 2PYHA 4XMYA 2NTQA 1IA5A 2ODLA 1DBOA 1VBLA 3B8YA 3GQAA 4NK6A 1KCDA 1PLUA 4XLHA 2NSPA 1HG8A 4W8TA 2O0WA 4XN0A 1JTAA 4OZZA 4YELA 2PECA 3FY3A 1PE9A 4EW9A 2X6XA 2X6YA 4NK8A 4YZXA 2X3HA 5AMVA 2X85A 3T9GA 3VSVA 4AVZA 2VBMA 1WMRA 4MXNA 4YZ0A 4U49A 2X6WA 2O17A 1OFLA 3ZSCA 1QJVA 1IDJA 3WWGA 1DBGA 2NT6A 3VMWA 3ZPPA 1O8IA 4MR0A 4Z03A 3GQ7A 3KRGA 4XLCA 1O88A 2UVFA 2O1DA 1K5CA 4XOPA 2UVEA 2QXZA 4XQFA 1O8JA 3GQ8A 1OGOX 4OJ6A 1O8GA 2VJIA 4YEJA 1OOCA 1OGMX 4Z05A 2INVA 4PMHA 4HWVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PXZ A;  1H80 A;  1IDK A;  3UW0 A;  2PYG A;  2INU A;  1O8K A;  4OZY A;  4XNF A;  4URR A;  4W8R A;  2VJJ A;  4YZQ A;  1NHC A;  2IQ7 A;  1RMG A;  1RWR A;  1O8M A;  1O8E A;  4XLE A;  4W8S A;  4I84 A;  2NT9 A;  3SUC A;  2O04 A;  1OFM A;  3LMW A;  1KTW A;  4Z06 A;  3VST A;  1EE6 A;  1GQ8 A;  1O8L A;  3B4N A;  3EQN A;  4W8Q A;  2QY1 A;  1IB4 A;  4XLA A;  4OJL A;  1X0C A;  4XOT A;  4XON A;  3VSU A;  4XL9 A;  4OJ5 A;  3GRH A;  2NTP A;  4C2L A;  4XLF A;  3B90 A;  4XKV A;  4XKW A;  1CZF A;  4XM3 A;  1BN8 A;  4U4B A;  1KCC A;  3EQO A;  4XR6 A;  1O8H A;  2NTB A;  3GQ9 A;  4XN3 A;  4XOR A;  5C1C A;  2VBE A;  2Z8G A;  3JUR A;  1BHE A;  2O0V A;  1RU4 A;  1QCX A;  5C1E A;  1O8F A;  2EWE A;  2BSP A;  2NST A;  1AIR A;  4YZA A;  2QX3 A;  2VBK A;  1XG2 A;  1O8D A;  2NZM A;  4OJO A;  4OJP A;  3VMV A;  1JRG A;  2PYH A;  4XMY A;  2NTQ A;  1IA5 A;  2ODL A;  1DBO A;  1VBL A;  3B8Y A;  3GQA A;  4NK6 A;  1KCD A;  1PLU A;  4XLH A;  2NSP A;  1HG8 A;  4W8T A;  2O0W A;  4XN0 A;  1JTA A;  4OZZ A;  4YEL A;  2PEC A;  3FY3 A;  1PE9 A;  4EW9 A;  2X6X A;  2X6Y A;  4NK8 A;  4YZX A;  2X3H A;  5AMV A;  2X85 A;  3T9G A;  3VSV A;  4AVZ A;  2VBM A;  1WMR A;  4MXN A;  4YZ0 A;  4U49 A;  2X6W A;  2O17 A;  1OFL A;  3ZSC A;  1QJV A;  1IDJ A;  3WWG A;  1DBG A;  2NT6 A;  3VMW A;  3ZPP A;  1O8I A;  4MR0 A;  4Z03 A;  3GQ7 A;  3KRG A;  4XLC A;  1O88 A;  2UVF A;  2O1D A;  1K5C A;  4XOP A;  2UVE A;  2QXZ A;  4XQF A;  1O8J A;  3GQ8 A;  1OGO X;  4OJ6 A;  1O8G A;  2VJI A;  4YEJ A;  1OOC A;  1OGM X;  4Z05 A;  2INV A;  4PMH A;  4HWV A; 
#chains in the Genus database with same CATH topology
 1HF2 A;  3RIQ A;  1PXZ A;  1QQ1 A;  1TYW A;  1H80 A;  3DU1 X;  1IDK A;  3UW0 A;  2PYG A;  1L1I A;  2INU A;  1O8K A;  4OZY A;  4XNF A;  4URR A;  4W8R A;  2VJJ A;  4YZQ A;  1NHC A;  2IQ7 A;  1RMG A;  1RWR A;  1O8M A;  2V5I A;  1EA0 A;  2XTY A;  1O8E A;  3N90 A;  4XLE A;  3PSS A;  2BM7 A;  3N6Z A;  4W8S A;  2J8K A;  2NT9 A;  4I84 A;  3SUC A;  3SZE A;  2O04 A;  1OFM A;  3LMW A;  1KTW A;  4YC5 A;  4Z06 A;  1EE6 A;  1GQ8 A;  2W7Z A;  1O8L A;  1TSP A;  1LLW A;  3B4N A;  3EQN A;  4W8Q A;  2QY1 A;  3ML3 A;  3PET A;  4XLA A;  1IB4 A;  4OJL A;  1X0C A;  4XOT A;  4XON A;  3VSU A;  3LYC A;  4XL9 A;  4OJ5 A;  3GRH A;  2NTP A;  4C2L A;  3TH0 A;  4XLF A;  3B90 A;  4XKV A;  1WXR A;  4XKW A;  1TYV A;  2O6W A;  1OFE A;  3VST A;  1CZF A;  4XM3 A;  1K4Z A;  1BN8 A;  1KQ5 A;  4U4B A;  5JLV C;  1KCC A;  3NB2 A;  2BM4 A;  3H09 A;  3EQO A;  4XR6 A;  1LLZ A;  1O8H A;  2NTB A;  3GQ9 A;  4XN3 A;  2QZA A;  4XOR A;  5C1C A;  3SQV A;  2VBE A;  2Z8G A;  3JUR A;  1BHE A;  2O0V A;  4YFO A;  1OFD A;  1RU4 A;  5JMC B;  2BX6 A;  1QCX A;  5C1E A;  2IOU G;  1O8F A;  2J8I A;  2EWE A;  4YCQ A;  2BSP A;  2NST A;  1TYX A;  1AIR A;  2XT4 A;  4YZA A;  2QX3 A;  2VBK A;  3BH7 B;  1XG2 A;  1O8D A;  2BM6 A;  3P4G A;  1CLW A;  2NZM A;  1QA1 A;  4OJO A;  2YUH A;  4OJP A;  3VMV A;  1JRG A;  2PYH A;  4XMY A;  2NTQ A;  1IA5 A;  3AK5 A;  2ODL A;  1DBO A;  2XT2 A;  2BM5 A;  1VBL A;  2VFQ A;  1QRB A;  3B8Y A;  3GQA A;  4NK6 A;  1KCD A;  4V02 C;  1PLU A;  4XLH A;  2NSP A;  1HG8 A;  4W8T A;  4KH3 A;  2O0W A;  4XN0 A;  1JTA A;  1LM1 A;  2VFM A;  4OZZ A;  4YEL A;  2PEC A;  2QYU A;  3FY3 A;  1PE9 A;  3JX8 A;  3LJY A;  4EW9 A;  2X6X A;  2X6Y A;  4NK8 A;  1TYU A;  4YZX A;  2X3H A;  2B0R A;  5AMV A;  2X85 A;  3BH6 B;  3T9G A;  3VSV A;  2VBM A;  4AVZ A;  4OM9 A;  1WMR A;  5DNS A;  4MXN A;  4YZ0 A;  4U49 A;  2VFP A;  2X6W A;  2O17 A;  1OFL A;  2F3L A;  3ZSC A;  1QJV A;  1IDJ A;  4YEI A;  3WWG A;  1DBG A;  2NT6 A;  4JRA C;  4YDT A;  3VMW A;  1K8F A;  1O8I A;  3ZPP A;  4MR0 A;  3PSZ A;  4Z03 A;  2XTX A;  1QRC A;  3GQ7 A;  2XC1 A;  4OPW A;  3SY2 A;  3KRG A;  4XLC A;  1O88 A;  2UVF A;  1QA2 A;  2O1D A;  1K5C A;  4XOP A;  3SYJ A;  2UVE A;  2QXZ A;  2G0Y A;  2VFN A;  3NAW A;  4XQF A;  1O8J A;  3GQ8 A;  1OGO X;  4OJ6 A;  1DAB A;  1O8G A;  1EZG A;  2VJI A;  2XTW A;  4YEJ A;  1OOC A;  1OGM X;  4Z05 A;  2INV A;  2VFO A;  4PMH A;  1QA3 A;  4HWV A; 
#chains in the Genus database with same CATH homology
 1PXZ A;  1H80 A;  1IDK A;  3UW0 A;  2PYG A;  2INU A;  1O8K A;  4OZY A;  4XNF A;  4URR A;  4W8R A;  2VJJ A;  4YZQ A;  1NHC A;  2IQ7 A;  1RMG A;  1RWR A;  1O8M A;  1O8E A;  4XLE A;  4W8S A;  4I84 A;  2NT9 A;  3SUC A;  2O04 A;  1OFM A;  3LMW A;  1KTW A;  4Z06 A;  3VST A;  1EE6 A;  1GQ8 A;  1O8L A;  3B4N A;  3EQN A;  4W8Q A;  2QY1 A;  1IB4 A;  4XLA A;  4OJL A;  1X0C A;  4XOT A;  4XON A;  3VSU A;  4XL9 A;  4OJ5 A;  3GRH A;  2NTP A;  4C2L A;  4XLF A;  3B90 A;  4XKV A;  4XKW A;  1CZF A;  4XM3 A;  1BN8 A;  4U4B A;  1KCC A;  3EQO A;  4XR6 A;  1O8H A;  2NTB A;  3GQ9 A;  4XN3 A;  4XOR A;  5C1C A;  2VBE A;  2Z8G A;  3JUR A;  1BHE A;  2O0V A;  1RU4 A;  1QCX A;  5C1E A;  1O8F A;  2EWE A;  2BSP A;  2NST A;  1AIR A;  4YZA A;  2QX3 A;  2VBK A;  1XG2 A;  1O8D A;  2NZM A;  4OJO A;  4OJP A;  3VMV A;  1JRG A;  2PYH A;  4XMY A;  2NTQ A;  1IA5 A;  2ODL A;  1DBO A;  1VBL A;  3B8Y A;  3GQA A;  4NK6 A;  1KCD A;  1PLU A;  4XLH A;  2NSP A;  1HG8 A;  4W8T A;  2O0W A;  4XN0 A;  1JTA A;  4OZZ A;  4YEL A;  2PEC A;  3FY3 A;  1PE9 A;  4EW9 A;  2X6X A;  2X6Y A;  4NK8 A;  4YZX A;  2X3H A;  5AMV A;  2X85 A;  3T9G A;  3VSV A;  4AVZ A;  2VBM A;  1WMR A;  4MXN A;  4YZ0 A;  4U49 A;  2X6W A;  2O17 A;  1OFL A;  3ZSC A;  1QJV A;  1IDJ A;  3WWG A;  1DBG A;  2NT6 A;  3VMW A;  3ZPP A;  1O8I A;  4MR0 A;  4Z03 A;  3GQ7 A;  3KRG A;  4XLC A;  1O88 A;  2UVF A;  2O1D A;  1K5C A;  4XOP A;  2UVE A;  2QXZ A;  4XQF A;  1O8J A;  3GQ8 A;  1OGO X;  4OJ6 A;  1O8G A;  2VJI A;  4YEJ A;  1OOC A;  1OGM X;  4Z05 A;  2INV A;  4PMH A;  4HWV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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