1CZFA

Endo-polygalacturonase ii from aspergillus niger
Total Genus 134
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
134
sequence length
335
structure length
335
Chain Sequence
DSCTFTTAAAAKAGKAKCSTITLNNIEVPAGTTLDLTGLTSGTKVIFEGTTTFQYEEWAGPLISMSGEHITVTGASGHLINCDGARWWDGKGTSGKKKPKFFYAHGLDSSSITGLNIKNTPLMAFSVQANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSGENIWFTGGTCIGGHGLSIGSVGDRSNNVVKNVTIEHSTVSNSENAVRIKTISGATGSVSEITYSNIVMSGISDYGVVIQQDYEDGKPTGKPTNGVTIQDVKLESVTGSVDSGATEIYLLCGSGSCSDWTWDDVKVTGGKKSTACKNFPSVASC
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords POLYGALACTURONASE II
publication title 1.68-A crystal structure of endopolygalacturonase II from Aspergillus niger and identification of active site residues by site-directed mutagenesis.
pubmed doi rcsb
total genus 134
structure length 335
sequence length 335
chains with identical sequence B
ec nomenclature ec 3.2.1.15: Endo-polygalacturonase.
pdb deposition date 1999-09-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00295 Glyco_hydro_28 Glycosyl hydrolases family 28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1czfA00
1DBGA 1KCDA 2NSTA 1GQ8A 2VJIA 4YZAA 1OFLA 4XMYA 4XLHA 3SUCA 2Z8GA 3KRGA 2NSPA 1JRGA 2VJJA 1O8IA 2X85A 2EWEA 2O1DA 4XN3A 1O88A 3T9GA 4OJOA 1BHEA 2QXZA 1O8KA 2INUA 1QJVA 4XNFA 4U49A 1HG8A 2PECA 4XN0A 1PE9A 3VSTA 2PYGA 4XOTA 3VMWA 2VBEA 1OGMX 4URRA 1RMGA 3VMVA 4MR0A 4YEJA 1KCCA 1AIRA 4OJLA 2PYHA 5C1EA 4OJPA 1O8FA 3VSVA 2UVEA 4Z06A 1DBOA 4XONA 4XLFA 4YZXA 3EQOA 3GQ8A 4NK6A 1O8MA 4C2LA 2O04A 4W8RA 1H80A 1WMRA 3ZPPA 4XKVA 2BSPA 4YZ0A 4NK8A 2X6XA 3GQ7A 1RWRA 4W8TA 4XLCA 4U4BA 1QCXA 1O8JA 1OGOX 1O8LA 4XORA 3GQAA 1O8EA 3ZSCA 3GQ9A 1EE6A 2NTBA 4HWVA 1K5CA 3EQNA 1IB4A 4YZQA 3JURA 1O8HA 1IA5A 1RU4A 5C1CA 1O8DA 2QX3A 3UW0A 3GRHA 2X6WA 2O17A 2QY1A 2O0VA 4XR6A 4W8QA 2UVFA 4Z05A 4MXNA 2X3HA 1VBLA 3FY3A 1X0CA 4Z03A 1IDKA 2NTPA 2O0WA 1O8GA 4XL9A 1IDJA 3LMWA 4XKWA 1CZFA 1KTWA 4XOPA 4PMHA 4XLEA 2VBKA 2NT9A 4YELA 1PXZA 1JTAA 2INVA 2NTQA 3B8YA 1OOCA 4I84A 4OJ5A 2NZMA 2IQ7A 1OFMA 2VBMA 3B90A 1PLUA 3VSUA 2NT6A 3WWGA 1XG2A 4AVZA 2ODLA 4XQFA 4OZYA 4EW9A 4OZZA 1NHCA 4OJ6A 4XLAA 1BN8A 5AMVA 4XM3A 4W8SA 2X6YA 3B4NA
chains in the Genus database with same CATH superfamily
1DBGA 1KCDA 1TYWA 1GQ8A 2BM5A 2NSTA 2VJIA 1OFLA 3JX8A 4YZAA 1WXRA 2YUHA 4XMYA 1LLZA 4XLHA 3DU1X 3SUCA 1OFEA 1OFDA 2F3LA 2Z8GA 3RIQA 1QA1A 1EA0A 3KRGA 2NSPA 1QA3A 1JRGA 2VJJA 1O8IA 3TH0A 2X85A 2J8IA 2O1DA 4XN3A 1TYXA 2VFQA 1O88A 2W7ZA 2XTYA 2QZAA 2XT2A 2X6YA 3T9GA 3BH7B 4OJOA 1BHEA 2QXZA 1O8KA 3AK5A 2INUA 2BM4A 1QJVA 3LJYA 4XNFA 4U49A 1HG8A 3SZEA 2PECA 4XN0A 2BM7A 1PE9A 4KH3A 4YC5A 3VSTA 2PYGA 4XOTA 3SQVA 3VMWA 2VBEA 1OGMX 4JRAC 4URRA 1RMGA 3PETA 4OPWA 4MR0A 3VMVA 4YEJA 2O6WA 1KCCA 1AIRA 4OJLA 2PYHA 5C1EA 4OJPA 1O8FA 3VSVA 2UVEA 3H09A 1HF2A 1KQ5A 1DBOA 4XONA 4Z06A 4XLFA 4V02C 1QA2A 1EZGA 4YZXA 3N90A 3EQOA 3GQ8A 4YDTA 4NK6A 1O8MA 4OM9A 3SYJA 4C2LA 4YCQA 2O04A 1TYUA 1QRCA 4W8RA 1H80A 1WMRA 3ZPPA 4XKVA 2BSPA 4YZ0A 2J8KA 2BM6A 3ML3A 4NK8A 2X6XA 3GQ7A 1RWRA 4W8TA 4XLCA 1CLWA 4U4BA 1QCXA 3PSSA 4YEIA 1O8JA 1OGOX 1O8LA 4XORA 3PSZA 1QQ1A 3GQAA 1O8EA 3ZSCA 3GQ9A 1EE6A 2NTBA 2VFNA 4HWVA 3EQNA 1K4ZA 1IB4A 1K5CA 2VFOA 4YZQA 3JURA 1O8HA 2XT4A 5JMCB 3NAWA 1IA5A 1RU4A 5C1CA 1L1IA 3P4GA 1O8DA 2QX3A 3SY2A 3UW0A 3GRHA 2X6WA 1TSPA 2O17A 2QY1A 2O0VA 4XR6A 4W8QA 2UVFA 4Z05A 2VFPA 4YFOA 5JLVC 1QRBA 4MXNA 3LYCA 2QYUA 2X3HA 1VBLA 3N6ZA 5DNSA 1LLWA 1TYVA 2B0RA 3FY3A 1K8FA 2BX6A 1BN8A 1LM1A 1X0CA 4Z03A 3BH6B 1IDKA 2NTPA 2O0WA 1O8GA 4XL9A 1IDJA 3LMWA 4XKWA 1CZFA 1KTWA 4XOPA 4PMHA 2XTXA 4XLEA 2VFMA 2VBKA 2NT9A 4YELA 1PXZA 1JTAA 2INVA 2NTQA 3B8YA 1OOCA 4I84A 4OJ5A 2IOUG 3NB2A 2NZMA 2IQ7A 1OFMA 2VBMA 2XTWA 3B90A 1PLUA 2V5IA 3VSUA 2NT6A 1DABA 3WWGA 1XG2A 4AVZA 2ODLA 4XQFA 4OZYA 2XC1A 4EW9A 4OZZA 1NHCA 4OJ6A 4XLAA 2G0YA 5AMVA 4XM3A 4W8SA 2EWEA 3B4NA
chains in the Genus database with same CATH topology
1DBGA 1KCDA 2NSTA 1GQ8A 2VJIA 4YZAA 1OFLA 4XMYA 4XLHA 3SUCA 2Z8GA 3KRGA 2NSPA 1JRGA 2VJJA 1O8IA 2X85A 2EWEA 2O1DA 4XN3A 1O88A 3T9GA 4OJOA 1BHEA 2QXZA 1O8KA 2INUA 1QJVA 4XNFA 4U49A 1HG8A 2PECA 4XN0A 1PE9A 3VSTA 2PYGA 4XOTA 3VMWA 2VBEA 1OGMX 4URRA 1RMGA 3VMVA 4MR0A 4YEJA 1KCCA 1AIRA 4OJLA 2PYHA 5C1EA 4OJPA 1O8FA 3VSVA 2UVEA 4Z06A 1DBOA 4XONA 4XLFA 4YZXA 3EQOA 3GQ8A 4NK6A 1O8MA 4C2LA 2O04A 4W8RA 1H80A 1WMRA 3ZPPA 4XKVA 2BSPA 4YZ0A 4NK8A 2X6XA 3GQ7A 1RWRA 4W8TA 4XLCA 4U4BA 1QCXA 1O8JA 1OGOX 1O8LA 4XORA 3GQAA 1O8EA 3ZSCA 3GQ9A 1EE6A 2NTBA 4HWVA 1K5CA 3EQNA 1IB4A 4YZQA 3JURA 1O8HA 1IA5A 1RU4A 5C1CA 1O8DA 2QX3A 3UW0A 3GRHA 2X6WA 2O17A 2QY1A 2O0VA 4XR6A 4W8QA 2UVFA 4Z05A 4MXNA 2X3HA 1VBLA 3FY3A 1X0CA 4Z03A 1IDKA 2NTPA 2O0WA 1O8GA 4XL9A 1IDJA 3LMWA 4XKWA 1CZFA 1KTWA 4XOPA 4PMHA 4XLEA 2VBKA 2NT9A 4YELA 1PXZA 1JTAA 2INVA 2NTQA 3B8YA 1OOCA 4I84A 4OJ5A 2NZMA 2IQ7A 1OFMA 2VBMA 3B90A 1PLUA 3VSUA 2NT6A 3WWGA 1XG2A 4AVZA 2ODLA 4XQFA 4OZYA 4EW9A 4OZZA 1NHCA 4OJ6A 4XLAA 1BN8A 5AMVA 4XM3A 4W8SA 2X6YA 3B4NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DBG A;  1KCD A;  2NST A;  1GQ8 A;  2VJI A;  4YZA A;  1OFL A;  4XMY A;  4XLH A;  3SUC A;  2Z8G A;  3KRG A;  2NSP A;  1JRG A;  2VJJ A;  1O8I A;  2X85 A;  2EWE A;  2O1D A;  4XN3 A;  1O88 A;  3T9G A;  4OJO A;  1BHE A;  2QXZ A;  1O8K A;  2INU A;  1QJV A;  4XNF A;  4U49 A;  1HG8 A;  2PEC A;  4XN0 A;  1PE9 A;  3VST A;  2PYG A;  4XOT A;  3VMW A;  2VBE A;  1OGM X;  4URR A;  1RMG A;  3VMV A;  4MR0 A;  4YEJ A;  1KCC A;  1AIR A;  4OJL A;  2PYH A;  5C1E A;  4OJP A;  1O8F A;  3VSV A;  2UVE A;  4Z06 A;  1DBO A;  4XON A;  4XLF A;  4YZX A;  3EQO A;  3GQ8 A;  4NK6 A;  1O8M A;  4C2L A;  2O04 A;  4W8R A;  1H80 A;  1WMR A;  3ZPP A;  4XKV A;  2BSP A;  4YZ0 A;  4NK8 A;  2X6X A;  3GQ7 A;  1RWR A;  4W8T A;  4XLC A;  4U4B A;  1QCX A;  1O8J A;  1OGO X;  1O8L A;  4XOR A;  3GQA A;  1O8E A;  3ZSC A;  3GQ9 A;  1EE6 A;  2NTB A;  4HWV A;  1K5C A;  3EQN A;  1IB4 A;  4YZQ A;  3JUR A;  1O8H A;  1IA5 A;  1RU4 A;  5C1C A;  1O8D A;  2QX3 A;  3UW0 A;  3GRH A;  2X6W A;  2O17 A;  2QY1 A;  2O0V A;  4XR6 A;  4W8Q A;  2UVF A;  4Z05 A;  4MXN A;  2X3H A;  1VBL A;  3FY3 A;  1X0C A;  4Z03 A;  1IDK A;  2NTP A;  2O0W A;  1O8G A;  4XL9 A;  1IDJ A;  3LMW A;  4XKW A;  1CZF A;  1KTW A;  4XOP A;  4PMH A;  4XLE A;  2VBK A;  2NT9 A;  4YEL A;  1PXZ A;  1JTA A;  2INV A;  2NTQ A;  3B8Y A;  1OOC A;  4I84 A;  4OJ5 A;  2NZM A;  2IQ7 A;  1OFM A;  2VBM A;  3B90 A;  1PLU A;  3VSU A;  2NT6 A;  3WWG A;  1XG2 A;  4AVZ A;  2ODL A;  4XQF A;  4OZY A;  4EW9 A;  4OZZ A;  1NHC A;  4OJ6 A;  4XLA A;  1BN8 A;  5AMV A;  4XM3 A;  4W8S A;  2X6Y A;  3B4N A; 
#chains in the Genus database with same CATH topology
 1DBG A;  1KCD A;  1TYW A;  1GQ8 A;  2BM5 A;  2NST A;  2VJI A;  1OFL A;  3JX8 A;  4YZA A;  1WXR A;  2YUH A;  4XMY A;  1LLZ A;  4XLH A;  3DU1 X;  3SUC A;  1OFE A;  1OFD A;  2F3L A;  2Z8G A;  3RIQ A;  1QA1 A;  1EA0 A;  3KRG A;  2NSP A;  1QA3 A;  1JRG A;  2VJJ A;  1O8I A;  3TH0 A;  2X85 A;  2J8I A;  2O1D A;  4XN3 A;  1TYX A;  2VFQ A;  1O88 A;  2W7Z A;  2XTY A;  2QZA A;  2XT2 A;  2X6Y A;  3T9G A;  3BH7 B;  4OJO A;  1BHE A;  2QXZ A;  1O8K A;  3AK5 A;  2INU A;  2BM4 A;  1QJV A;  3LJY A;  4XNF A;  4U49 A;  1HG8 A;  3SZE A;  2PEC A;  4XN0 A;  2BM7 A;  1PE9 A;  4KH3 A;  4YC5 A;  3VST A;  2PYG A;  4XOT A;  3SQV A;  3VMW A;  2VBE A;  1OGM X;  4JRA C;  4URR A;  1RMG A;  3PET A;  4OPW A;  4MR0 A;  3VMV A;  4YEJ A;  2O6W A;  1KCC A;  1AIR A;  4OJL A;  2PYH A;  5C1E A;  4OJP A;  1O8F A;  3VSV A;  2UVE A;  3H09 A;  1HF2 A;  1KQ5 A;  1DBO A;  4XON A;  4Z06 A;  4XLF A;  4V02 C;  1QA2 A;  1EZG A;  4YZX A;  3N90 A;  3EQO A;  3GQ8 A;  4YDT A;  4NK6 A;  1O8M A;  4OM9 A;  3SYJ A;  4C2L A;  4YCQ A;  2O04 A;  1TYU A;  1QRC A;  4W8R A;  1H80 A;  1WMR A;  3ZPP A;  4XKV A;  2BSP A;  4YZ0 A;  2J8K A;  2BM6 A;  3ML3 A;  4NK8 A;  2X6X A;  3GQ7 A;  1RWR A;  4W8T A;  4XLC A;  1CLW A;  4U4B A;  1QCX A;  3PSS A;  4YEI A;  1O8J A;  1OGO X;  1O8L A;  4XOR A;  3PSZ A;  1QQ1 A;  3GQA A;  1O8E A;  3ZSC A;  3GQ9 A;  1EE6 A;  2NTB A;  2VFN A;  4HWV A;  3EQN A;  1K4Z A;  1IB4 A;  1K5C A;  2VFO A;  4YZQ A;  3JUR A;  1O8H A;  2XT4 A;  5JMC B;  3NAW A;  1IA5 A;  1RU4 A;  5C1C A;  1L1I A;  3P4G A;  1O8D A;  2QX3 A;  3SY2 A;  3UW0 A;  3GRH A;  2X6W A;  1TSP A;  2O17 A;  2QY1 A;  2O0V A;  4XR6 A;  4W8Q A;  2UVF A;  4Z05 A;  2VFP A;  4YFO A;  5JLV C;  1QRB A;  4MXN A;  3LYC A;  2QYU A;  2X3H A;  1VBL A;  3N6Z A;  5DNS A;  1LLW A;  1TYV A;  2B0R A;  3FY3 A;  1K8F A;  2BX6 A;  1BN8 A;  1LM1 A;  1X0C A;  4Z03 A;  3BH6 B;  1IDK A;  2NTP A;  2O0W A;  1O8G A;  4XL9 A;  1IDJ A;  3LMW A;  4XKW A;  1CZF A;  1KTW A;  4XOP A;  4PMH A;  2XTX A;  4XLE A;  2VFM A;  2VBK A;  2NT9 A;  4YEL A;  1PXZ A;  1JTA A;  2INV A;  2NTQ A;  3B8Y A;  1OOC A;  4I84 A;  4OJ5 A;  2IOU G;  3NB2 A;  2NZM A;  2IQ7 A;  1OFM A;  2VBM A;  2XTW A;  3B90 A;  1PLU A;  2V5I A;  3VSU A;  2NT6 A;  1DAB A;  3WWG A;  1XG2 A;  4AVZ A;  2ODL A;  4XQF A;  4OZY A;  2XC1 A;  4EW9 A;  4OZZ A;  1NHC A;  4OJ6 A;  4XLA A;  2G0Y A;  5AMV A;  4XM3 A;  4W8S A;  2EWE A;  3B4N A; 
#chains in the Genus database with same CATH homology
 1DBG A;  1KCD A;  2NST A;  1GQ8 A;  2VJI A;  4YZA A;  1OFL A;  4XMY A;  4XLH A;  3SUC A;  2Z8G A;  3KRG A;  2NSP A;  1JRG A;  2VJJ A;  1O8I A;  2X85 A;  2EWE A;  2O1D A;  4XN3 A;  1O88 A;  3T9G A;  4OJO A;  1BHE A;  2QXZ A;  1O8K A;  2INU A;  1QJV A;  4XNF A;  4U49 A;  1HG8 A;  2PEC A;  4XN0 A;  1PE9 A;  3VST A;  2PYG A;  4XOT A;  3VMW A;  2VBE A;  1OGM X;  4URR A;  1RMG A;  3VMV A;  4MR0 A;  4YEJ A;  1KCC A;  1AIR A;  4OJL A;  2PYH A;  5C1E A;  4OJP A;  1O8F A;  3VSV A;  2UVE A;  4Z06 A;  1DBO A;  4XON A;  4XLF A;  4YZX A;  3EQO A;  3GQ8 A;  4NK6 A;  1O8M A;  4C2L A;  2O04 A;  4W8R A;  1H80 A;  1WMR A;  3ZPP A;  4XKV A;  2BSP A;  4YZ0 A;  4NK8 A;  2X6X A;  3GQ7 A;  1RWR A;  4W8T A;  4XLC A;  4U4B A;  1QCX A;  1O8J A;  1OGO X;  1O8L A;  4XOR A;  3GQA A;  1O8E A;  3ZSC A;  3GQ9 A;  1EE6 A;  2NTB A;  4HWV A;  1K5C A;  3EQN A;  1IB4 A;  4YZQ A;  3JUR A;  1O8H A;  1IA5 A;  1RU4 A;  5C1C A;  1O8D A;  2QX3 A;  3UW0 A;  3GRH A;  2X6W A;  2O17 A;  2QY1 A;  2O0V A;  4XR6 A;  4W8Q A;  2UVF A;  4Z05 A;  4MXN A;  2X3H A;  1VBL A;  3FY3 A;  1X0C A;  4Z03 A;  1IDK A;  2NTP A;  2O0W A;  1O8G A;  4XL9 A;  1IDJ A;  3LMW A;  4XKW A;  1CZF A;  1KTW A;  4XOP A;  4PMH A;  4XLE A;  2VBK A;  2NT9 A;  4YEL A;  1PXZ A;  1JTA A;  2INV A;  2NTQ A;  3B8Y A;  1OOC A;  4I84 A;  4OJ5 A;  2NZM A;  2IQ7 A;  1OFM A;  2VBM A;  3B90 A;  1PLU A;  3VSU A;  2NT6 A;  3WWG A;  1XG2 A;  4AVZ A;  2ODL A;  4XQF A;  4OZY A;  4EW9 A;  4OZZ A;  1NHC A;  4OJ6 A;  4XLA A;  1BN8 A;  5AMV A;  4XM3 A;  4W8S A;  2X6Y A;  3B4N A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...