3PSZA

Crystal structure of ahqnr, the qnr protein from aeromonas hydrophila (p21212 crystal form)
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
216
structure length
213
Chain Sequence
MIKDKFEGVRFEQQDLEGEQFQGCRFIGCNFSWLDLAERFVDCSFYDRESEQSCLLQGCDLREASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFANQITVKSYFEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQINEDQQQALLEQIGLIVFP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Qnr
publication title Structural insights into quinolone antibiotic resistance mediated by pentapeptide repeat proteins: conserved surface loops direct the activity of a Qnr protein from a Gram-negative bacterium
pubmed doi rcsb
source organism Aeromonas hydrophila
molecule tags Cell cycle
total genus 81
structure length 213
sequence length 216
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-12-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00805 Pentapeptide Pentapeptide repeats (8 copies)
A PF13599 Pentapeptide_4 Pentapeptide repeats (9 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.80 Mainly Beta 3 Solenoid Pectate Lyase C-like E3 ubiquitin-protein ligase SopA 3pszA00
2XTXA 3NB2A 4YCQA 2J8KA 3PSZA 3NAWA 3DU1X 4YFOA 3PSSA 5DNSA 4YDTA 4YEIA 2QYUA 2XTYA 3SY2A 2O6WA 2XTWA 4YC5A 2XT4A 3SQVA 2XT2A 2QZAA
chains in the Genus database with same CATH superfamily
2INVA 1CZFA 2PYGA 2BM6A 1LM1A 1O8LA 1RMGA 4YZAA 3AK5A 1O8FA 1QA3A 2BM4A 1IDJA 2O1DA 1QQ1A 2ODLA 1DBGA 1L1IA 1NHCA 1DBOA 2PECA 3PSSA 5DNSA 2BM7A 4U49A 1X0CA 1XG2A 4XN0A 2Z8GA 3GQ7A 1TYUA 4YZXA 2J8IA 1TYXA 4XLHA 1EE6A 4Z06A 4YEIA 4XKWA 2NSPA 1RWRA 4NK6A 1OGMX 3BH6B 4YZ0A 1H80A 3H09A 3ZPPA 4XKVA 1QA1A 1EZGA 4OJ6A 4URRA 2X6YA 1HG8A 3SZEA 2XT2A 1KQ5A 2QZAA 2VFQA 3P4GA 2XTXA 3NB2A 4XLCA 1K8FA 4OPWA 3WWGA 4I84A 1EA0A 1QRBA 4Z03A 4XORA 1CLWA 3ML3A 2QY1A 1HF2A 2VBMA 2X6WA 3PSZA 1WXRA 3NAWA 1BN8A 1TYVA 5C1CA 3B8YA 3SYJA 1IDKA 2NTPA 4W8TA 3VSUA 2NTQA 1QJVA 1O8EA 1GQ8A 4U4BA 3JX8A 1KCDA 2O17A 2IOUG 2VJIA 3SUCA 2O0WA 1LLZA 4OZYA 4XMYA 1K5CA 2QYUA 3LYCA 3RIQA 2X85A 3ZSCA 2VJJA 1OFEA 2XTYA 2NT9A 4PMHA 2O6WA 2XTWA 3SY2A 1OFDA 3B90A 4W8QA 4XLEA 1VBLA 1K4ZA 4JRAC 2QX3A 1LLWA 4YCQA 1O8GA 4OJ5A 2VFOA 2VFMA 3LMWA 1WMRA 3GQ9A 4KH3A 2X3HA 5C1EA 3VSTA 4OJOA 4XOTA 2VFNA 3N90A 4XLFA 1IB4A 2XC1A 1O8HA 1O88A 2B0RA 2F3LA 3VMVA 3LJYA 1QCXA 3BH7B 2O0VA 2VBEA 3FY3A 2VFPA 1QRCA 1BHEA 4HWVA 4YEJA 3UW0A 1TSPA 1RU4A 2BM5A 3VMWA 4YDTA 1OGOX 2G0YA 4OJPA 1O8KA 2UVEA 1O8DA 1OFMA 4Z05A 3VSVA 4C2LA 3EQOA 2V5IA 4YC5A 2XT4A 2QXZA 4OM9A 2IQ7A 4V02C 2O04A 4NK8A 1O8MA 2EWEA 1JRGA 3GQAA 3EQNA 4XQFA 1KTWA 2BSPA 4XLAA 5JLVC 1DABA 2J8KA 4OZZA 4YELA 4AVZA 4MR0A 3DU1X 1PE9A 4OJLA 2BX6A 4YFOA 4XOPA 3GQ8A 1TYWA 4XR6A 1QA2A 1O8JA 5AMVA 2W7ZA 3TH0A 4EW9A 3GRHA 2X6XA 2UVFA 1PXZA 2NZMA 1OFLA 4XNFA 2PYHA 3N6ZA 5JMCB 3T9GA 2NTBA 4W8RA 4XONA 3KRGA 2YUHA 1JTAA 4XL9A 4MXNA 2NT6A 3JURA 4XN3A 4XM3A 1PLUA 2NSTA 4YZQA 1KCCA 3PETA 3SQVA 4W8SA 1IA5A 2VBKA 2INUA 3B4NA 1OOCA 1O8IA 1AIRA
chains in the Genus database with same CATH topology
2XTXA 3NB2A 4YCQA 2J8KA 3PSZA 3NAWA 3DU1X 4YFOA 3PSSA 5DNSA 4YDTA 4YEIA 2QYUA 2XTYA 3SY2A 2O6WA 2XTWA 4YC5A 2XT4A 3SQVA 2XT2A 2QZAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XTX A;  3NB2 A;  4YCQ A;  2J8K A;  3PSZ A;  3NAW A;  3DU1 X;  4YFO A;  3PSS A;  5DNS A;  4YDT A;  4YEI A;  2QYU A;  2XTY A;  3SY2 A;  2O6W A;  2XTW A;  4YC5 A;  2XT4 A;  3SQV A;  2XT2 A;  2QZA A; 
#chains in the Genus database with same CATH topology
 2INV A;  1CZF A;  2PYG A;  2BM6 A;  1LM1 A;  1O8L A;  1RMG A;  4YZA A;  3AK5 A;  1O8F A;  1QA3 A;  2BM4 A;  1IDJ A;  2O1D A;  1QQ1 A;  2ODL A;  1DBG A;  1L1I A;  1NHC A;  1DBO A;  2PEC A;  3PSS A;  5DNS A;  2BM7 A;  4U49 A;  1X0C A;  1XG2 A;  4XN0 A;  2Z8G A;  3GQ7 A;  1TYU A;  4YZX A;  2J8I A;  1TYX A;  4XLH A;  1EE6 A;  4Z06 A;  4YEI A;  4XKW A;  2NSP A;  1RWR A;  4NK6 A;  1OGM X;  3BH6 B;  4YZ0 A;  1H80 A;  3H09 A;  3ZPP A;  4XKV A;  1QA1 A;  1EZG A;  4OJ6 A;  4URR A;  2X6Y A;  1HG8 A;  3SZE A;  2XT2 A;  1KQ5 A;  2QZA A;  2VFQ A;  3P4G A;  2XTX A;  3NB2 A;  4XLC A;  1K8F A;  4OPW A;  3WWG A;  4I84 A;  1EA0 A;  1QRB A;  4Z03 A;  4XOR A;  1CLW A;  3ML3 A;  2QY1 A;  1HF2 A;  2VBM A;  2X6W A;  3PSZ A;  1WXR A;  3NAW A;  1BN8 A;  1TYV A;  5C1C A;  3B8Y A;  3SYJ A;  1IDK A;  2NTP A;  4W8T A;  3VSU A;  2NTQ A;  1QJV A;  1O8E A;  1GQ8 A;  4U4B A;  3JX8 A;  1KCD A;  2O17 A;  2IOU G;  2VJI A;  3SUC A;  2O0W A;  1LLZ A;  4OZY A;  4XMY A;  1K5C A;  2QYU A;  3LYC A;  3RIQ A;  2X85 A;  3ZSC A;  2VJJ A;  1OFE A;  2XTY A;  2NT9 A;  4PMH A;  2O6W A;  2XTW A;  3SY2 A;  1OFD A;  3B90 A;  4W8Q A;  4XLE A;  1VBL A;  1K4Z A;  4JRA C;  2QX3 A;  1LLW A;  4YCQ A;  1O8G A;  4OJ5 A;  2VFO A;  2VFM A;  3LMW A;  1WMR A;  3GQ9 A;  4KH3 A;  2X3H A;  5C1E A;  3VST A;  4OJO A;  4XOT A;  2VFN A;  3N90 A;  4XLF A;  1IB4 A;  2XC1 A;  1O8H A;  1O88 A;  2B0R A;  2F3L A;  3VMV A;  3LJY A;  1QCX A;  3BH7 B;  2O0V A;  2VBE A;  3FY3 A;  2VFP A;  1QRC A;  1BHE A;  4HWV A;  4YEJ A;  3UW0 A;  1TSP A;  1RU4 A;  2BM5 A;  3VMW A;  4YDT A;  1OGO X;  2G0Y A;  4OJP A;  1O8K A;  2UVE A;  1O8D A;  1OFM A;  4Z05 A;  3VSV A;  4C2L A;  3EQO A;  2V5I A;  4YC5 A;  2XT4 A;  2QXZ A;  4OM9 A;  2IQ7 A;  4V02 C;  2O04 A;  4NK8 A;  1O8M A;  2EWE A;  1JRG A;  3GQA A;  3EQN A;  4XQF A;  1KTW A;  2BSP A;  4XLA A;  5JLV C;  1DAB A;  2J8K A;  4OZZ A;  4YEL A;  4AVZ A;  4MR0 A;  3DU1 X;  1PE9 A;  4OJL A;  2BX6 A;  4YFO A;  4XOP A;  3GQ8 A;  1TYW A;  4XR6 A;  1QA2 A;  1O8J A;  5AMV A;  2W7Z A;  3TH0 A;  4EW9 A;  3GRH A;  2X6X A;  2UVF A;  1PXZ A;  2NZM A;  1OFL A;  4XNF A;  2PYH A;  3N6Z A;  5JMC B;  3T9G A;  2NTB A;  4W8R A;  4XON A;  3KRG A;  2YUH A;  1JTA A;  4XL9 A;  4MXN A;  2NT6 A;  3JUR A;  4XN3 A;  4XM3 A;  1PLU A;  2NST A;  4YZQ A;  1KCC A;  3PET A;  3SQV A;  4W8S A;  1IA5 A;  2VBK A;  2INU A;  3B4N A;  1OOC A;  1O8I A;  1AIR A; 
#chains in the Genus database with same CATH homology
 2XTX A;  3NB2 A;  4YCQ A;  2J8K A;  3PSZ A;  3NAW A;  3DU1 X;  4YFO A;  3PSS A;  5DNS A;  4YDT A;  4YEI A;  2QYU A;  2XTY A;  3SY2 A;  2O6W A;  2XTW A;  4YC5 A;  2XT4 A;  3SQV A;  2XT2 A;  2QZA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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