3PSZA

Crystal structure of ahqnr, the qnr protein from aeromonas hydrophila (p21212 crystal form)
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
216
structure length
213
Chain Sequence
b'MIKDKFEGVRFEQQDLEGEQFQGCRFIGCNFSWLDLAERFVDCSFYDRESEQSCLLQGCDLREASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFANQITVKSYFEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQINEDQQQALLEQIGLIVFP'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Qnr
publication title Structural insights into quinolone antibiotic resistance mediated by pentapeptide repeat proteins: conserved surface loops direct the activity of a Qnr protein from a Gram-negative bacterium
pubmed doi rcsb
source organism Aeromonas hydrophila
molecule tags Cell cycle
total genus 81
structure length 213
sequence length 216
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-12-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00805 Pentapeptide Pentapeptide repeats (8 copies)
A PF13599 Pentapeptide_4 Pentapeptide repeats (9 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.80 Mainly Beta 3 Solenoid Pectate Lyase C-like E3 ubiquitin-protein ligase SopA 3pszA00
2O6WA 2XT2A 3SY2A 4YC5A 4YEIA 2XTWA 2QZAA 3PSZA 3PSSA 3SQVA 2J8KA 2XTYA 2XTXA 2QYUA 4YDTA 2XT4A 3DU1X 3NB2A 5DNSA 4YFOA 3NAWA 4YCQA
chains in the Genus database with same CATH superfamily
4I84A 1IB4A 3PETA 1IDKA 2O6WA 2XT2A 1QJVA 1L1IA 4XL9A 2QY1A 2INVA 1AIRA 3SY2A 1CZFA 1JTAA 4XN0A 1LLWA 1EA0A 2QZAA 4OZZA 3KRGA 5DNSA 2G0YA 4OJ5A 1O8JA 1BHEA 1LLZA 1QRBA 2XTYA 5JMCB 1EE6A 4XMYA 1O8HA 3FY3A 4XOTA 1IA5A 1O8DA 1O8MA 3EQOA 3LMWA 2XTXA 1KTWA 3JX8A 1EZGA 1TYWA 2B0RA 1QRCA 2O17A 3GRHA 3SYJA 3AK5A 2O04A 2X6WA 2NSTA 2O0VA 3JURA 1JRGA 2QX3A 2BM6A 4XLEA 4Z05A 4NK8A 2VBEA 3N6ZA 1OGOX 1KQ5A 1OFLA 2UVEA 3B4NA 3B8YA 4V02C 3GQ8A 4XM3A 5C1EA 1K5CA 2IQ7A 1PXZA 1VBLA 4U49A 1HF2A 4XNFA 4YC5A 1DBGA 1PE9A 4YEIA 1KCCA 1WMRA 2BM5A 4XKWA 3SQVA 1QA2A 2UVFA 4OJOA 4EW9A 1IDJA 1H80A 1RWRA 3B90A 4MR0A 2BM7A 2NTPA 1PLUA 2VBKA 1BN8A 1OFEA 4XLAA 2BM4A 1RU4A 2NTBA 2W7ZA 4MXNA 1RMGA 1DABA 1QA3A 4YEJA 4YZQA 1OOCA 2VFNA 2X6XA 1O8LA 2VBMA 2J8KA 3TH0A 2YUHA 4W8SA 3VSUA 2PYGA 2NTQA 4JRAC 2V5IA 2NT9A 1K8FA 2O0WA 3VSTA 2NT6A 2F3LA 1O8FA 4YELA 4XLCA 5JLVC 2XTWA 3PSZA 3SUCA 1CLWA 2X85A 1O88A 3VSVA 2XC1A 2VFMA 1O8EA 3P4GA 4U4BA 2VJIA 4YZ0A 3SZEA 4PMHA 3N90A 1KCDA 4OJLA 2QXZA 1XG2A 3H09A 4XR6A 3WWGA 3ZPPA 2Z8GA 1QA1A 4Z03A 1QQ1A 4XQFA 2NZMA 3GQ7A 4URRA 2X3HA 4YDTA 2PECA 4Z06A 1QCXA 1TYXA 2X6YA 4XONA 1O8GA 4OPWA 4XLFA 3NB2A 2O1DA 4XN3A 1HG8A 3NAWA 4OJ6A 5C1CA 4W8QA 1OFMA 2VJJA 3T9GA 3ZSCA 4AVZA 3ML3A 1TSPA 1LM1A 1GQ8A 1O8IA 2PYHA 3BH6B 4OZYA 2VFQA 4OJPA 2J8IA 4XKVA 4HWVA 2IOUG 3GQ9A 3EQNA 3LJYA 3RIQA 4C2LA 3GQAA 3PSSA 1TYVA 3VMVA 4W8RA 2BSPA 1NHCA 1OFDA 1K4ZA 2NSPA 4W8TA 1X0CA 1TYUA 3UW0A 5AMVA 1DBOA 2QYUA 2ODLA 4OM9A 2INUA 4XLHA 3BH7B 1OGMX 4NK6A 1WXRA 4KH3A 2EWEA 4XORA 4YZAA 2XT4A 4YZXA 3DU1X 3LYCA 4XOPA 2VFPA 4YFOA 2VFOA 1O8KA 3VMWA 4YCQA 2BX6A
chains in the Genus database with same CATH topology
2O6WA 2XT2A 3SY2A 4YC5A 4YEIA 2XTWA 2QZAA 3PSZA 3PSSA 3SQVA 2J8KA 2XTYA 2XTXA 2QYUA 4YDTA 2XT4A 3DU1X 3NB2A 5DNSA 4YFOA 3NAWA 4YCQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O6W A;  2XT2 A;  3SY2 A;  4YC5 A;  4YEI A;  2XTW A;  2QZA A;  3PSZ A;  3PSS A;  3SQV A;  2J8K A;  2XTY A;  2XTX A;  2QYU A;  4YDT A;  2XT4 A;  3DU1 X;  3NB2 A;  5DNS A;  4YFO A;  3NAW A;  4YCQ A; 
#chains in the Genus database with same CATH topology
 4I84 A;  1IB4 A;  3PET A;  1IDK A;  2O6W A;  2XT2 A;  1QJV A;  1L1I A;  4XL9 A;  2QY1 A;  2INV A;  1AIR A;  3SY2 A;  1CZF A;  1JTA A;  4XN0 A;  1LLW A;  1EA0 A;  2QZA A;  4OZZ A;  3KRG A;  5DNS A;  2G0Y A;  4OJ5 A;  1O8J A;  1BHE A;  1LLZ A;  1QRB A;  2XTY A;  5JMC B;  1EE6 A;  4XMY A;  1O8H A;  3FY3 A;  4XOT A;  1IA5 A;  1O8D A;  1O8M A;  3EQO A;  3LMW A;  2XTX A;  1KTW A;  3JX8 A;  1EZG A;  1TYW A;  2B0R A;  1QRC A;  2O17 A;  3GRH A;  3SYJ A;  3AK5 A;  2O04 A;  2X6W A;  2NST A;  2O0V A;  3JUR A;  1JRG A;  2QX3 A;  2BM6 A;  4XLE A;  4Z05 A;  4NK8 A;  2VBE A;  3N6Z A;  1OGO X;  1KQ5 A;  1OFL A;  2UVE A;  3B4N A;  3B8Y A;  4V02 C;  3GQ8 A;  4XM3 A;  5C1E A;  1K5C A;  2IQ7 A;  1PXZ A;  1VBL A;  4U49 A;  1HF2 A;  4XNF A;  4YC5 A;  1DBG A;  1PE9 A;  4YEI A;  1KCC A;  1WMR A;  2BM5 A;  4XKW A;  3SQV A;  1QA2 A;  2UVF A;  4OJO A;  4EW9 A;  1IDJ A;  1H80 A;  1RWR A;  3B90 A;  4MR0 A;  2BM7 A;  2NTP A;  1PLU A;  2VBK A;  1BN8 A;  1OFE A;  4XLA A;  2BM4 A;  1RU4 A;  2NTB A;  2W7Z A;  4MXN A;  1RMG A;  1DAB A;  1QA3 A;  4YEJ A;  4YZQ A;  1OOC A;  2VFN A;  2X6X A;  1O8L A;  2VBM A;  2J8K A;  3TH0 A;  2YUH A;  4W8S A;  3VSU A;  2PYG A;  2NTQ A;  4JRA C;  2V5I A;  2NT9 A;  1K8F A;  2O0W A;  3VST A;  2NT6 A;  2F3L A;  1O8F A;  4YEL A;  4XLC A;  5JLV C;  2XTW A;  3PSZ A;  3SUC A;  1CLW A;  2X85 A;  1O88 A;  3VSV A;  2XC1 A;  2VFM A;  1O8E A;  3P4G A;  4U4B A;  2VJI A;  4YZ0 A;  3SZE A;  4PMH A;  3N90 A;  1KCD A;  4OJL A;  2QXZ A;  1XG2 A;  3H09 A;  4XR6 A;  3WWG A;  3ZPP A;  2Z8G A;  1QA1 A;  4Z03 A;  1QQ1 A;  4XQF A;  2NZM A;  3GQ7 A;  4URR A;  2X3H A;  4YDT A;  2PEC A;  4Z06 A;  1QCX A;  1TYX A;  2X6Y A;  4XON A;  1O8G A;  4OPW A;  4XLF A;  3NB2 A;  2O1D A;  4XN3 A;  1HG8 A;  3NAW A;  4OJ6 A;  5C1C A;  4W8Q A;  1OFM A;  2VJJ A;  3T9G A;  3ZSC A;  4AVZ A;  3ML3 A;  1TSP A;  1LM1 A;  1GQ8 A;  1O8I A;  2PYH A;  3BH6 B;  4OZY A;  2VFQ A;  4OJP A;  2J8I A;  4XKV A;  4HWV A;  2IOU G;  3GQ9 A;  3EQN A;  3LJY A;  3RIQ A;  4C2L A;  3GQA A;  3PSS A;  1TYV A;  3VMV A;  4W8R A;  2BSP A;  1NHC A;  1OFD A;  1K4Z A;  2NSP A;  4W8T A;  1X0C A;  1TYU A;  3UW0 A;  5AMV A;  1DBO A;  2QYU A;  2ODL A;  4OM9 A;  2INU A;  4XLH A;  3BH7 B;  1OGM X;  4NK6 A;  1WXR A;  4KH3 A;  2EWE A;  4XOR A;  4YZA A;  2XT4 A;  4YZX A;  3DU1 X;  3LYC A;  4XOP A;  2VFP A;  4YFO A;  2VFO A;  1O8K A;  3VMW A;  4YCQ A;  2BX6 A; 
#chains in the Genus database with same CATH homology
 2O6W A;  2XT2 A;  3SY2 A;  4YC5 A;  4YEI A;  2XTW A;  2QZA A;  3PSZ A;  3PSS A;  3SQV A;  2J8K A;  2XTY A;  2XTX A;  2QYU A;  4YDT A;  2XT4 A;  3DU1 X;  3NB2 A;  5DNS A;  4YFO A;  3NAW A;  4YCQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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