3PSZA

Crystal structure of ahqnr, the qnr protein from aeromonas hydrophila (p21212 crystal form)
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
216
structure length
213
Chain Sequence
MIKDKFEGVRFEQQDLEGEQFQGCRFIGCNFSWLDLAERFVDCSFYDRESEQSCLLQGCDLREASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFANQITVKSYFEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQINEDQQQALLEQIGLIVFP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural insights into quinolone antibiotic resistance mediated by pentapeptide repeat proteins: conserved surface loops direct the activity of a Qnr protein from a Gram-negative bacterium
pubmed doi rcsb
source organism Aeromonas hydrophila
molecule tags Cell cycle
molecule keywords Qnr
total genus 81
structure length 213
sequence length 216
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-12-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00805 Pentapeptide Pentapeptide repeats (8 copies)
A PF13599 Pentapeptide_4 Pentapeptide repeats (9 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.80 Mainly Beta 3 Solenoid Pectate Lyase C-like E3 ubiquitin-protein ligase SopA 3pszA00
2XT2A 3SQVA 3NAWA 4YDTA 2J8KA 3PSZA 2XTWA 4YCQA 2XT4A 2O6WA 3SY2A 2XTYA 3DU1X 2QYUA 3PSSA 2QZAA 4YFOA 4YC5A 5DNSA 2XTXA 4YEIA 3NB2A
chains in the Genus database with same CATH superfamily
1IA5A 3JURA 4Z05A 5C1CA 4OJ6A 4MXNA 2INVA 2PYHA 3BH7B 1OGMX 4XOPA 1K8FA 3B4NA 3B90A 2UVFA 4HWVA 3PSZA 2BM4A 3LMWA 3VMWA 1O8KA 4XQFA 1L1IA 4KH3A 2W7ZA 1OFEA 2VFOA 2IQ7A 2X6XA 2XT4A 2O6WA 4U4BA 2X6WA 3P4GA 4Z06A 1PE9A 1HF2A 3NB2A 1OFMA 1LLZA 1VBLA 2O1DA 2QYUA 1BN8A 2XC1A 4XR6A 3KRGA 2VBEA 3N90A 2VJIA 1DBGA 1QA3A 1WMRA 2QZAA 3BH6B 4XOTA 3GRHA 2NT6A 4YZXA 4XMYA 3PETA 1QQ1A 4PMHA 4V02C 1TSPA 4XN0A 4OJOA 4YEIA 2BSPA 4W8SA 4W8RA 1KTWA 4NK6A 2VFMA 4JRAC 2QXZA 4XLFA 2NSPA 1DBOA 1EE6A 1O8FA 3UW0A 2V5IA 1DABA 2B0RA 4YZAA 1XG2A 2PECA 1GQ8A 1AIRA 1CLWA 1RU4A 1O8EA 1LM1A 4XL9A 4XORA 2X6YA 4XLCA 1TYVA 2XTWA 2J8IA 4YCQA 2NZMA 4NK8A 4YZQA 2QY1A 3SY2A 4U49A 5C1EA 1O8JA 2NTBA 1IDJA 1LLWA 4XM3A 2G0YA 2VFPA 4XLEA 3VSVA 3EQNA 2NSTA 3ZSCA 3PSSA 4W8QA 1O8MA 1TYXA 2BM6A 3GQAA 3VSUA 2XTXA 3GQ7A 3H09A 3LYCA 4AVZA 2BM5A 3SUCA 2BX6A 1QRBA 2X85A 2NTQA 3TH0A 4MR0A 3SQVA 3GQ8A 4YDTA 3VMVA 4OJLA 1KCCA 2ODLA 2O0VA 3GQ9A 4XLHA 2INUA 5JLVC 2X3HA 1OFLA 1WXRA 1EA0A 1KQ5A 2QX3A 4OPWA 1OGOX 3EQOA 1K4ZA 1O88A 4XLAA 2XTYA 4XONA 1JRGA 2VBMA 3RIQA 1QJVA 1OFDA 3B8YA 1JTAA 1O8DA 1OOCA 2UVEA 4YEJA 4EW9A 2O0WA 1NHCA 4XKWA 2PYGA 1K5CA 2BM7A 4W8TA 4XN3A 1IB4A 2YUHA 4YC5A 4XNFA 5DNSA 1TYUA 3SZEA 2O04A 3FY3A 2F3LA 1RWRA 1CZFA 1O8LA 3JX8A 4OZYA 2XT2A 4OJ5A 1HG8A 1QRCA 3NAWA 1EZGA 1QA1A 1TYWA 2J8KA 1O8IA 3ZPPA 4URRA 3VSTA 2O17A 3LJYA 4Z03A 4OJPA 2VBKA 4XKVA 1PXZA 2NTPA 4OM9A 1IDKA 1BHEA 3DU1X 1QA2A 3N6ZA 4OZZA 2NT9A 3T9GA 5AMVA 3SYJA 1RMGA 4C2LA 5JMCB 3AK5A 1H80A 2Z8GA 1KCDA 3ML3A 2IOUG 4I84A 1O8GA 4YFOA 1PLUA 1X0CA 4YELA 4YZ0A 1QCXA 2EWEA 2VFQA 3WWGA 2VJJA 1O8HA 2VFNA
chains in the Genus database with same CATH topology
2XT2A 3SQVA 3NAWA 4YDTA 2J8KA 3PSZA 2XTWA 4YCQA 2XT4A 2O6WA 3SY2A 2XTYA 3DU1X 2QYUA 3PSSA 2QZAA 4YFOA 4YC5A 5DNSA 2XTXA 4YEIA 3NB2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XT2 A;  3SQV A;  3NAW A;  4YDT A;  2J8K A;  3PSZ A;  2XTW A;  4YCQ A;  2XT4 A;  2O6W A;  3SY2 A;  2XTY A;  3DU1 X;  2QYU A;  3PSS A;  2QZA A;  4YFO A;  4YC5 A;  5DNS A;  2XTX A;  4YEI A;  3NB2 A; 
#chains in the Genus database with same CATH topology
 1IA5 A;  3JUR A;  4Z05 A;  5C1C A;  4OJ6 A;  4MXN A;  2INV A;  2PYH A;  3BH7 B;  1OGM X;  4XOP A;  1K8F A;  3B4N A;  3B90 A;  2UVF A;  4HWV A;  3PSZ A;  2BM4 A;  3LMW A;  3VMW A;  1O8K A;  4XQF A;  1L1I A;  4KH3 A;  2W7Z A;  1OFE A;  2VFO A;  2IQ7 A;  2X6X A;  2XT4 A;  2O6W A;  4U4B A;  2X6W A;  3P4G A;  4Z06 A;  1PE9 A;  1HF2 A;  3NB2 A;  1OFM A;  1LLZ A;  1VBL A;  2O1D A;  2QYU A;  1BN8 A;  2XC1 A;  4XR6 A;  3KRG A;  2VBE A;  3N90 A;  2VJI A;  1DBG A;  1QA3 A;  1WMR A;  2QZA A;  3BH6 B;  4XOT A;  3GRH A;  2NT6 A;  4YZX A;  4XMY A;  3PET A;  1QQ1 A;  4PMH A;  4V02 C;  1TSP A;  4XN0 A;  4OJO A;  4YEI A;  2BSP A;  4W8S A;  4W8R A;  1KTW A;  4NK6 A;  2VFM A;  4JRA C;  2QXZ A;  4XLF A;  2NSP A;  1DBO A;  1EE6 A;  1O8F A;  3UW0 A;  2V5I A;  1DAB A;  2B0R A;  4YZA A;  1XG2 A;  2PEC A;  1GQ8 A;  1AIR A;  1CLW A;  1RU4 A;  1O8E A;  1LM1 A;  4XL9 A;  4XOR A;  2X6Y A;  4XLC A;  1TYV A;  2XTW A;  2J8I A;  4YCQ A;  2NZM A;  4NK8 A;  4YZQ A;  2QY1 A;  3SY2 A;  4U49 A;  5C1E A;  1O8J A;  2NTB A;  1IDJ A;  1LLW A;  4XM3 A;  2G0Y A;  2VFP A;  4XLE A;  3VSV A;  3EQN A;  2NST A;  3ZSC A;  3PSS A;  4W8Q A;  1O8M A;  1TYX A;  2BM6 A;  3GQA A;  3VSU A;  2XTX A;  3GQ7 A;  3H09 A;  3LYC A;  4AVZ A;  2BM5 A;  3SUC A;  2BX6 A;  1QRB A;  2X85 A;  2NTQ A;  3TH0 A;  4MR0 A;  3SQV A;  3GQ8 A;  4YDT A;  3VMV A;  4OJL A;  1KCC A;  2ODL A;  2O0V A;  3GQ9 A;  4XLH A;  2INU A;  5JLV C;  2X3H A;  1OFL A;  1WXR A;  1EA0 A;  1KQ5 A;  2QX3 A;  4OPW A;  1OGO X;  3EQO A;  1K4Z A;  1O88 A;  4XLA A;  2XTY A;  4XON A;  1JRG A;  2VBM A;  3RIQ A;  1QJV A;  1OFD A;  3B8Y A;  1JTA A;  1O8D A;  1OOC A;  2UVE A;  4YEJ A;  4EW9 A;  2O0W A;  1NHC A;  4XKW A;  2PYG A;  1K5C A;  2BM7 A;  4W8T A;  4XN3 A;  1IB4 A;  2YUH A;  4YC5 A;  4XNF A;  5DNS A;  1TYU A;  3SZE A;  2O04 A;  3FY3 A;  2F3L A;  1RWR A;  1CZF A;  1O8L A;  3JX8 A;  4OZY A;  2XT2 A;  4OJ5 A;  1HG8 A;  1QRC A;  3NAW A;  1EZG A;  1QA1 A;  1TYW A;  2J8K A;  1O8I A;  3ZPP A;  4URR A;  3VST A;  2O17 A;  3LJY A;  4Z03 A;  4OJP A;  2VBK A;  4XKV A;  1PXZ A;  2NTP A;  4OM9 A;  1IDK A;  1BHE A;  3DU1 X;  1QA2 A;  3N6Z A;  4OZZ A;  2NT9 A;  3T9G A;  5AMV A;  3SYJ A;  1RMG A;  4C2L A;  5JMC B;  3AK5 A;  1H80 A;  2Z8G A;  1KCD A;  3ML3 A;  2IOU G;  4I84 A;  1O8G A;  4YFO A;  1PLU A;  1X0C A;  4YEL A;  4YZ0 A;  1QCX A;  2EWE A;  2VFQ A;  3WWG A;  2VJJ A;  1O8H A;  2VFN A; 
#chains in the Genus database with same CATH homology
 2XT2 A;  3SQV A;  3NAW A;  4YDT A;  2J8K A;  3PSZ A;  2XTW A;  4YCQ A;  2XT4 A;  2O6W A;  3SY2 A;  2XTY A;  3DU1 X;  2QYU A;  3PSS A;  2QZA A;  4YFO A;  4YC5 A;  5DNS A;  2XTX A;  4YEI A;  3NB2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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