1PE9A

Mutations in the t1.5 loop of pectate lyase a
Total Genus 132
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
132
sequence length
361
structure length
361
Chain Sequence
AELVSDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNGSIFSDNGSVLNGSAVDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSGKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Effect of mutations in the T1.5 loop of pectate lyase A from Erwinia chrysanthemi EC16.
pubmed doi rcsb
source organism Erwinia chrysanthemi
molecule tags Lyase
molecule keywords Pectate lyase A
total genus 132
structure length 361
sequence length 361
chains with identical sequence B
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2003-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1pe9A00
2QY1A 1RWRA 4W8RA 2UVEA 3T9GA 1O8HA 5C1EA 2UVFA 2BSPA 2X6YA 3GQ9A 1VBLA 2X6XA 1O8JA 3SUCA 2ODLA 4XR6A 2O04A 4U49A 4YZQA 1BHEA 4XOTA 1X0CA 4Z05A 4XL9A 1OFLA 1OGOX 2NTQA 3GRHA 1O8IA 4URRA 1XG2A 2X6WA 3FY3A 4OZYA 1OFMA 1WMRA 4OJLA 3GQAA 3ZPPA 4OJ6A 4XM3A 1KCDA 2NTPA 4OJ5A 1OGMX 4OJPA 1O8MA 1IB4A 2NT9A 1JTAA 3B4NA 2PECA 1H80A 2QX3A 4XQFA 2VBKA 4XKVA 3EQOA 1O8FA 3GQ7A 3JURA 4XMYA 3B8YA 1O8LA 2NSTA 1O88A 4I84A 2VJJA 4XONA 3WWGA 4MXNA 4NK6A 1AIRA 4XLFA 1JRGA 2INVA 1OOCA 4XORA 4YELA 3VMVA 1PE9A 4XLEA 1GQ8A 1PXZA 3VSTA 4OJOA 4YZAA 2PYGA 2NSPA 1O8EA 4XLHA 4XN0A 4XKWA 4W8SA 1IDKA 3B90A 4MR0A 2O17A 1QCXA 3ZSCA 1KTWA 2O0VA 1DBOA 1PLUA 5C1CA 2QXZA 1KCCA 5AMVA 4XLAA 2PYHA 3VSUA 2EWEA 4NK8A 4W8TA 4XNFA 4U4BA 2IQ7A 4EW9A 1NHCA 4AVZA 1K5CA 1EE6A 2NT6A 4Z06A 2X3HA 2O1DA 1RMGA 2O0WA 3VMWA 4YZXA 4XOPA 3EQNA 1O8DA 2VBMA 3UW0A 1RU4A 2VJIA 4XLCA 4HWVA 3GQ8A 1HG8A 1IA5A 4PMHA 4C2LA 2NTBA 1CZFA 2Z8GA 2VBEA 1DBGA 1IDJA 4YZ0A 1O8GA 1BN8A 4W8QA 3LMWA 4YEJA 2INUA 1O8KA 2X85A 3VSVA 1QJVA 2NZMA 3KRGA 4XN3A 4Z03A 4OZZA
chains in the Genus database with same CATH superfamily
2QY1A 1RWRA 3JX8A 4W8RA 2UVEA 3T9GA 1O8HA 5C1EA 2UVFA 2BSPA 2X6YA 3NAWA 1KQ5A 1VBLA 3GQ9A 1LM1A 2X6XA 1HF2A 1O8JA 3SQVA 3SUCA 2ODLA 3PSZA 4XR6A 1LLZA 5DNSA 2O04A 4U49A 4YZQA 1OFEA 3BH7B 1WXRA 4OPWA 1TYVA 3RIQA 2BM5A 3N6ZA 1BHEA 3PETA 3LYCA 4XOTA 1EZGA 1X0CA 4Z05A 3ML3A 4XL9A 2G0YA 1QA1A 1OFLA 1OGOX 2NTQA 3GRHA 1O8IA 4URRA 1XG2A 2X6WA 3FY3A 4OZYA 1OFMA 1WMRA 4OJLA 2V5IA 3GQAA 1TYWA 3ZPPA 4OJ6A 2VFMA 2QZAA 1K4ZA 2VFPA 2NTPA 3P4GA 4OJ5A 4XM3A 1KCDA 1OGMX 2BM6A 4OJPA 1O8MA 1IB4A 2NT9A 1JTAA 3B4NA 1TYUA 3TH0A 2PECA 2F3LA 5JLVC 1H80A 2J8IA 2QX3A 2XTXA 2BM4A 4KH3A 4XQFA 3SYJA 1EA0A 2VBKA 4XKVA 3EQOA 1O8FA 3GQ7A 3JURA 4XMYA 3B8YA 1O8LA 2NSTA 1O88A 4I84A 2VJJA 3LJYA 4XONA 3WWGA 4MXNA 1LLWA 4NK6A 1L1IA 1AIRA 4YC5A 4XLFA 1JRGA 2INVA 1OOCA 4XORA 4YELA 3VMVA 4YDTA 1PE9A 4XLEA 4Z03A 1GQ8A 1CLWA 2QYUA 1PXZA 2W7ZA 3VSTA 4OJOA 2XT4A 2VFQA 4YZAA 2PYGA 2VFNA 2NSPA 1TSPA 1O8EA 4XLHA 4XN0A 4XKWA 4W8SA 1IDKA 3B90A 2O6WA 2XTYA 4MR0A 2O17A 1QCXA 3ZSCA 1KTWA 1K8FA 2BX6A 2O0VA 1DBOA 1PLUA 5C1CA 3H09A 2QXZA 1KCCA 5AMVA 4XLAA 2PYHA 3N90A 3VSUA 2EWEA 2XC1A 4NK8A 4W8TA 4XNFA 3PSSA 3DU1X 2IQ7A 4U4BA 4EW9A 1NHCA 4AVZA 1K5CA 1EE6A 2NT6A 4Z06A 2XT2A 2X3HA 4YCQA 2O1DA 1RMGA 2O0WA 3VMWA 5JMCB 1DABA 3SZEA 4YZXA 4XOPA 3EQNA 4JRAC 4YEIA 1O8DA 2VBMA 3UW0A 1RU4A 2VJIA 4V02C 4XLCA 4HWVA 3AK5A 3GQ8A 1HG8A 1IA5A 2BM7A 2IOUG 4PMHA 3BH6B 4YFOA 4C2LA 2NTBA 1CZFA 1QQ1A 1QRCA 2Z8GA 2VBEA 1DBGA 1IDJA 2XTWA 4YZ0A 1O8GA 1BN8A 2VFOA 1QA2A 4W8QA 3LMWA 2YUHA 2INUA 1O8KA 2X85A 4YEJA 3SY2A 4OM9A 2B0RA 3NB2A 1QRBA 1TYXA 1QJVA 2NZMA 3VSVA 1QA3A 1OFDA 3KRGA 4XN3A 2J8KA 4OZZA
chains in the Genus database with same CATH topology
2QY1A 1RWRA 4W8RA 2UVEA 3T9GA 1O8HA 5C1EA 2UVFA 2BSPA 2X6YA 3GQ9A 1VBLA 2X6XA 1O8JA 3SUCA 2ODLA 4XR6A 2O04A 4U49A 4YZQA 1BHEA 4XOTA 1X0CA 4Z05A 4XL9A 1OFLA 1OGOX 2NTQA 3GRHA 1O8IA 4URRA 1XG2A 2X6WA 3FY3A 4OZYA 1OFMA 1WMRA 4OJLA 3GQAA 3ZPPA 4OJ6A 4XM3A 1KCDA 2NTPA 4OJ5A 1OGMX 4OJPA 1O8MA 1IB4A 2NT9A 1JTAA 3B4NA 2PECA 1H80A 2QX3A 4XQFA 2VBKA 4XKVA 3EQOA 1O8FA 3GQ7A 3JURA 4XMYA 3B8YA 1O8LA 2NSTA 1O88A 4I84A 2VJJA 4XONA 3WWGA 4MXNA 4NK6A 1AIRA 4XLFA 1JRGA 2INVA 1OOCA 4XORA 4YELA 3VMVA 1PE9A 4XLEA 1GQ8A 1PXZA 3VSTA 4OJOA 4YZAA 2PYGA 2NSPA 1O8EA 4XLHA 4XN0A 4XKWA 4W8SA 1IDKA 3B90A 4MR0A 2O17A 1QCXA 3ZSCA 1KTWA 2O0VA 1DBOA 1PLUA 5C1CA 2QXZA 1KCCA 5AMVA 4XLAA 2PYHA 3VSUA 2EWEA 4NK8A 4W8TA 4XNFA 4U4BA 2IQ7A 4EW9A 1NHCA 4AVZA 1K5CA 1EE6A 2NT6A 4Z06A 2X3HA 2O1DA 1RMGA 2O0WA 3VMWA 4YZXA 4XOPA 3EQNA 1O8DA 2VBMA 3UW0A 1RU4A 2VJIA 4XLCA 4HWVA 3GQ8A 1HG8A 1IA5A 4PMHA 4C2LA 2NTBA 1CZFA 2Z8GA 2VBEA 1DBGA 1IDJA 4YZ0A 1O8GA 1BN8A 4W8QA 3LMWA 4YEJA 2INUA 1O8KA 2X85A 3VSVA 1QJVA 2NZMA 3KRGA 4XN3A 4Z03A 4OZZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QY1 A;  1RWR A;  4W8R A;  2UVE A;  3T9G A;  1O8H A;  5C1E A;  2UVF A;  2BSP A;  2X6Y A;  3GQ9 A;  1VBL A;  2X6X A;  1O8J A;  3SUC A;  2ODL A;  4XR6 A;  2O04 A;  4U49 A;  4YZQ A;  1BHE A;  4XOT A;  1X0C A;  4Z05 A;  4XL9 A;  1OFL A;  1OGO X;  2NTQ A;  3GRH A;  1O8I A;  4URR A;  1XG2 A;  2X6W A;  3FY3 A;  4OZY A;  1OFM A;  1WMR A;  4OJL A;  3GQA A;  3ZPP A;  4OJ6 A;  4XM3 A;  1KCD A;  2NTP A;  4OJ5 A;  1OGM X;  4OJP A;  1O8M A;  1IB4 A;  2NT9 A;  1JTA A;  3B4N A;  2PEC A;  1H80 A;  2QX3 A;  4XQF A;  2VBK A;  4XKV A;  3EQO A;  1O8F A;  3GQ7 A;  3JUR A;  4XMY A;  3B8Y A;  1O8L A;  2NST A;  1O88 A;  4I84 A;  2VJJ A;  4XON A;  3WWG A;  4MXN A;  4NK6 A;  1AIR A;  4XLF A;  1JRG A;  2INV A;  1OOC A;  4XOR A;  4YEL A;  3VMV A;  1PE9 A;  4XLE A;  1GQ8 A;  1PXZ A;  3VST A;  4OJO A;  4YZA A;  2PYG A;  2NSP A;  1O8E A;  4XLH A;  4XN0 A;  4XKW A;  4W8S A;  1IDK A;  3B90 A;  4MR0 A;  2O17 A;  1QCX A;  3ZSC A;  1KTW A;  2O0V A;  1DBO A;  1PLU A;  5C1C A;  2QXZ A;  1KCC A;  5AMV A;  4XLA A;  2PYH A;  3VSU A;  2EWE A;  4NK8 A;  4W8T A;  4XNF A;  4U4B A;  2IQ7 A;  4EW9 A;  1NHC A;  4AVZ A;  1K5C A;  1EE6 A;  2NT6 A;  4Z06 A;  2X3H A;  2O1D A;  1RMG A;  2O0W A;  3VMW A;  4YZX A;  4XOP A;  3EQN A;  1O8D A;  2VBM A;  3UW0 A;  1RU4 A;  2VJI A;  4XLC A;  4HWV A;  3GQ8 A;  1HG8 A;  1IA5 A;  4PMH A;  4C2L A;  2NTB A;  1CZF A;  2Z8G A;  2VBE A;  1DBG A;  1IDJ A;  4YZ0 A;  1O8G A;  1BN8 A;  4W8Q A;  3LMW A;  4YEJ A;  2INU A;  1O8K A;  2X85 A;  3VSV A;  1QJV A;  2NZM A;  3KRG A;  4XN3 A;  4Z03 A;  4OZZ A; 
#chains in the Genus database with same CATH topology
 2QY1 A;  1RWR A;  3JX8 A;  4W8R A;  2UVE A;  3T9G A;  1O8H A;  5C1E A;  2UVF A;  2BSP A;  2X6Y A;  3NAW A;  1KQ5 A;  1VBL A;  3GQ9 A;  1LM1 A;  2X6X A;  1HF2 A;  1O8J A;  3SQV A;  3SUC A;  2ODL A;  3PSZ A;  4XR6 A;  1LLZ A;  5DNS A;  2O04 A;  4U49 A;  4YZQ A;  1OFE A;  3BH7 B;  1WXR A;  4OPW A;  1TYV A;  3RIQ A;  2BM5 A;  3N6Z A;  1BHE A;  3PET A;  3LYC A;  4XOT A;  1EZG A;  1X0C A;  4Z05 A;  3ML3 A;  4XL9 A;  2G0Y A;  1QA1 A;  1OFL A;  1OGO X;  2NTQ A;  3GRH A;  1O8I A;  4URR A;  1XG2 A;  2X6W A;  3FY3 A;  4OZY A;  1OFM A;  1WMR A;  4OJL A;  2V5I A;  3GQA A;  1TYW A;  3ZPP A;  4OJ6 A;  2VFM A;  2QZA A;  1K4Z A;  2VFP A;  2NTP A;  3P4G A;  4OJ5 A;  4XM3 A;  1KCD A;  1OGM X;  2BM6 A;  4OJP A;  1O8M A;  1IB4 A;  2NT9 A;  1JTA A;  3B4N A;  1TYU A;  3TH0 A;  2PEC A;  2F3L A;  5JLV C;  1H80 A;  2J8I A;  2QX3 A;  2XTX A;  2BM4 A;  4KH3 A;  4XQF A;  3SYJ A;  1EA0 A;  2VBK A;  4XKV A;  3EQO A;  1O8F A;  3GQ7 A;  3JUR A;  4XMY A;  3B8Y A;  1O8L A;  2NST A;  1O88 A;  4I84 A;  2VJJ A;  3LJY A;  4XON A;  3WWG A;  4MXN A;  1LLW A;  4NK6 A;  1L1I A;  1AIR A;  4YC5 A;  4XLF A;  1JRG A;  2INV A;  1OOC A;  4XOR A;  4YEL A;  3VMV A;  4YDT A;  1PE9 A;  4XLE A;  4Z03 A;  1GQ8 A;  1CLW A;  2QYU A;  1PXZ A;  2W7Z A;  3VST A;  4OJO A;  2XT4 A;  2VFQ A;  4YZA A;  2PYG A;  2VFN A;  2NSP A;  1TSP A;  1O8E A;  4XLH A;  4XN0 A;  4XKW A;  4W8S A;  1IDK A;  3B90 A;  2O6W A;  2XTY A;  4MR0 A;  2O17 A;  1QCX A;  3ZSC A;  1KTW A;  1K8F A;  2BX6 A;  2O0V A;  1DBO A;  1PLU A;  5C1C A;  3H09 A;  2QXZ A;  1KCC A;  5AMV A;  4XLA A;  2PYH A;  3N90 A;  3VSU A;  2EWE A;  2XC1 A;  4NK8 A;  4W8T A;  4XNF A;  3PSS A;  3DU1 X;  2IQ7 A;  4U4B A;  4EW9 A;  1NHC A;  4AVZ A;  1K5C A;  1EE6 A;  2NT6 A;  4Z06 A;  2XT2 A;  2X3H A;  4YCQ A;  2O1D A;  1RMG A;  2O0W A;  3VMW A;  5JMC B;  1DAB A;  3SZE A;  4YZX A;  4XOP A;  3EQN A;  4JRA C;  4YEI A;  1O8D A;  2VBM A;  3UW0 A;  1RU4 A;  2VJI A;  4V02 C;  4XLC A;  4HWV A;  3AK5 A;  3GQ8 A;  1HG8 A;  1IA5 A;  2BM7 A;  2IOU G;  4PMH A;  3BH6 B;  4YFO A;  4C2L A;  2NTB A;  1CZF A;  1QQ1 A;  1QRC A;  2Z8G A;  2VBE A;  1DBG A;  1IDJ A;  2XTW A;  4YZ0 A;  1O8G A;  1BN8 A;  2VFO A;  1QA2 A;  4W8Q A;  3LMW A;  2YUH A;  2INU A;  1O8K A;  2X85 A;  4YEJ A;  3SY2 A;  4OM9 A;  2B0R A;  3NB2 A;  1QRB A;  1TYX A;  1QJV A;  2NZM A;  3VSV A;  1QA3 A;  1OFD A;  3KRG A;  4XN3 A;  2J8K A;  4OZZ A; 
#chains in the Genus database with same CATH homology
 2QY1 A;  1RWR A;  4W8R A;  2UVE A;  3T9G A;  1O8H A;  5C1E A;  2UVF A;  2BSP A;  2X6Y A;  3GQ9 A;  1VBL A;  2X6X A;  1O8J A;  3SUC A;  2ODL A;  4XR6 A;  2O04 A;  4U49 A;  4YZQ A;  1BHE A;  4XOT A;  1X0C A;  4Z05 A;  4XL9 A;  1OFL A;  1OGO X;  2NTQ A;  3GRH A;  1O8I A;  4URR A;  1XG2 A;  2X6W A;  3FY3 A;  4OZY A;  1OFM A;  1WMR A;  4OJL A;  3GQA A;  3ZPP A;  4OJ6 A;  4XM3 A;  1KCD A;  2NTP A;  4OJ5 A;  1OGM X;  4OJP A;  1O8M A;  1IB4 A;  2NT9 A;  1JTA A;  3B4N A;  2PEC A;  1H80 A;  2QX3 A;  4XQF A;  2VBK A;  4XKV A;  3EQO A;  1O8F A;  3GQ7 A;  3JUR A;  4XMY A;  3B8Y A;  1O8L A;  2NST A;  1O88 A;  4I84 A;  2VJJ A;  4XON A;  3WWG A;  4MXN A;  4NK6 A;  1AIR A;  4XLF A;  1JRG A;  2INV A;  1OOC A;  4XOR A;  4YEL A;  3VMV A;  1PE9 A;  4XLE A;  1GQ8 A;  1PXZ A;  3VST A;  4OJO A;  4YZA A;  2PYG A;  2NSP A;  1O8E A;  4XLH A;  4XN0 A;  4XKW A;  4W8S A;  1IDK A;  3B90 A;  4MR0 A;  2O17 A;  1QCX A;  3ZSC A;  1KTW A;  2O0V A;  1DBO A;  1PLU A;  5C1C A;  2QXZ A;  1KCC A;  5AMV A;  4XLA A;  2PYH A;  3VSU A;  2EWE A;  4NK8 A;  4W8T A;  4XNF A;  4U4B A;  2IQ7 A;  4EW9 A;  1NHC A;  4AVZ A;  1K5C A;  1EE6 A;  2NT6 A;  4Z06 A;  2X3H A;  2O1D A;  1RMG A;  2O0W A;  3VMW A;  4YZX A;  4XOP A;  3EQN A;  1O8D A;  2VBM A;  3UW0 A;  1RU4 A;  2VJI A;  4XLC A;  4HWV A;  3GQ8 A;  1HG8 A;  1IA5 A;  4PMH A;  4C2L A;  2NTB A;  1CZF A;  2Z8G A;  2VBE A;  1DBG A;  1IDJ A;  4YZ0 A;  1O8G A;  1BN8 A;  4W8Q A;  3LMW A;  4YEJ A;  2INU A;  1O8K A;  2X85 A;  3VSV A;  1QJV A;  2NZM A;  3KRG A;  4XN3 A;  4Z03 A;  4OZZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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