1PE9A

Mutations in the t1.5 loop of pectate lyase a
Total Genus 132
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
132
sequence length
361
structure length
361
Chain Sequence
AELVSDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNGSIFSDNGSVLNGSAVDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSGKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Effect of mutations in the T1.5 loop of pectate lyase A from Erwinia chrysanthemi EC16.
pubmed doi rcsb
source organism Erwinia chrysanthemi
molecule tags Lyase
molecule keywords Pectate lyase A
total genus 132
structure length 361
sequence length 361
chains with identical sequence B
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2003-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1pe9A00
2PECA 3B4NA 4Z06A 2PYGA 4NK6A 4EW9A 2VJJA 2VBEA 3VSTA 2NTBA 1O8MA 4NK8A 4XQFA 1O8LA 3VSUA 3FY3A 4OJ5A 4XN3A 2NTPA 3B8YA 4W8RA 1PLUA 2O0WA 1OGOX 2UVFA 2X6XA 1IA5A 3JURA 4YELA 1K5CA 2NT6A 1O8IA 3UW0A 2QXZA 1VBLA 3SUCA 3LMWA 1GQ8A 2VBKA 2IQ7A 4W8QA 2ODLA 1BN8A 2VBMA 4XR6A 1RMGA 3GQAA 1WMRA 1PXZA 1NHCA 2QY1A 2NTQA 4XKVA 1CZFA 1OFMA 1KCCA 1DBOA 4XONA 3GQ8A 4YEJA 4Z03A 4XNFA 1RU4A 4MXNA 4XM3A 4OJPA 3VMVA 3WWGA 2PYHA 4YZAA 2NZMA 4XORA 4YZXA 4XLEA 1O8JA 3VMWA 4MR0A 3T9GA 4AVZA 1O8KA 4XLFA 1QJVA 4W8TA 2O1DA 1O88A 2O04A 4U49A 1RWRA 1IB4A 4XLCA 2QX3A 2BSPA 1KCDA 2NSPA 2EWEA 4XKWA 2Z8GA 1OGMX 3EQOA 1O8EA 4I84A 2VJIA 4XOPA 3ZPPA 2INVA 4XL9A 2X6YA 2NT9A 1X0CA 1BHEA 1JRGA 3GRHA 2UVEA 1OFLA 3ZSCA 1O8DA 5C1EA 3GQ7A 4C2LA 2O17A 2X3HA 4PMHA 4XMYA 5AMVA 1JTAA 4OZYA 4W8SA 4XLHA 1PE9A 3GQ9A 2INUA 4Z05A 3VSVA 4OZZA 4URRA 1O8FA 1O8GA 2X6WA 2O0VA 1HG8A 3B90A 3KRGA 1XG2A 1QCXA 4U4BA 5C1CA 1AIRA 1EE6A 1IDJA 4OJOA 4XN0A 2NSTA 4YZ0A 1O8HA 1IDKA 4OJ6A 4XOTA 3EQNA 1H80A 1KTWA 4HWVA 2X85A 4XLAA 4OJLA 4YZQA 1OOCA 1DBGA
chains in the Genus database with same CATH superfamily
2PECA 3B4NA 4Z06A 3SZEA 2PYGA 2VFOA 4NK6A 4YCQA 2VJJA 4EW9A 2VBEA 3VSTA 3H09A 2NTBA 1O8MA 3AK5A 2XTYA 3N90A 4NK8A 4XQFA 1O8LA 1QA1A 3DU1X 3NAWA 1TYUA 3NB2A 3VSUA 3FY3A 1EA0A 2QZAA 4OJ5A 4V02C 4XN3A 2NTPA 2IOUG 3B8YA 4W8RA 1PLUA 2O0WA 1EZGA 3SQVA 1OGOX 2UVFA 2VFQA 2X6XA 1IA5A 3JURA 4YELA 1K5CA 2NT6A 1O8IA 1QQ1A 3UW0A 1QRCA 2QXZA 1VBLA 3SUCA 4JRAC 3LMWA 1GQ8A 1QA3A 2VBKA 3SYJA 2IQ7A 1K4ZA 4W8QA 2ODLA 1BN8A 2VBMA 4XR6A 1RMGA 3GQAA 2XC1A 1WMRA 1PXZA 3SY2A 1NHCA 2QY1A 2NTQA 4XKVA 1CZFA 1OFMA 1KCCA 1DBOA 4XONA 5JMCB 1L1IA 3GQ8A 4YEJA 4Z03A 4XNFA 1RU4A 4MXNA 3LYCA 4XM3A 4OJPA 2QYUA 3VMVA 3WWGA 1OFDA 2PYHA 2J8IA 2F3LA 4YZAA 1TSPA 2NZMA 4XORA 4YZXA 3RIQA 4XLEA 1QA2A 2XTWA 1O8JA 3P4GA 3VMWA 4MR0A 5DNSA 2XT4A 3PSZA 3T9GA 3LJYA 2BM7A 4AVZA 3BH6B 1CLWA 4YZQA 1O8KA 4XLFA 1QJVA 2BM6A 2B0RA 4W8TA 1O88A 2O04A 2O1DA 3ML3A 1RWRA 4U49A 1IB4A 3N6ZA 1OFEA 1WXRA 4XLCA 4YEIA 2QX3A 2BSPA 4YFOA 1KCDA 2NSPA 2EWEA 4XKWA 2Z8GA 1OGMX 3EQOA 2VFPA 1O8EA 4I84A 2VJIA 4XOPA 4YC5A 2INVA 1TYWA 4XL9A 3ZPPA 2X6YA 2NT9A 2BX6A 2W7ZA 4OM9A 1DABA 1X0CA 1BHEA 1JRGA 5JLVC 1HF2A 3GRHA 2UVEA 1TYVA 1OFLA 2VFMA 2VFNA 3ZSCA 1O8DA 2XTXA 5C1EA 3GQ7A 4C2LA 2V5IA 2O17A 1QRBA 2X3HA 4PMHA 4XMYA 5AMVA 1JTAA 4OZYA 1K8FA 4KH3A 1LLWA 3PETA 4W8SA 4XLHA 1PE9A 3GQ9A 2INUA 3JX8A 3PSSA 4Z05A 3TH0A 3VSVA 1LLZA 4OZZA 4URRA 1O8FA 1O8GA 1LM1A 2X6WA 2O0VA 1HG8A 3B90A 3KRGA 1XG2A 1QCXA 4U4BA 1KQ5A 2G0YA 2O6WA 5C1CA 1AIRA 4OPWA 1EE6A 1IDJA 4OJOA 4XN0A 2NSTA 4YZ0A 1O8HA 1IDKA 2BM4A 4OJ6A 4XOTA 3EQNA 1TYXA 1H80A 2BM5A 3BH7B 4YDTA 2XT2A 1KTWA 4HWVA 2YUHA 2X85A 4XLAA 4OJLA 2J8KA 1OOCA 1DBGA
chains in the Genus database with same CATH topology
2PECA 3B4NA 4Z06A 2PYGA 4NK6A 4EW9A 2VJJA 2VBEA 3VSTA 2NTBA 1O8MA 4NK8A 4XQFA 1O8LA 3VSUA 3FY3A 4OJ5A 4XN3A 2NTPA 3B8YA 4W8RA 1PLUA 2O0WA 1OGOX 2UVFA 2X6XA 1IA5A 3JURA 4YELA 1K5CA 2NT6A 1O8IA 3UW0A 2QXZA 1VBLA 3SUCA 3LMWA 1GQ8A 2VBKA 2IQ7A 4W8QA 2ODLA 1BN8A 2VBMA 4XR6A 1RMGA 3GQAA 1WMRA 1PXZA 1NHCA 2QY1A 2NTQA 4XKVA 1CZFA 1OFMA 1KCCA 1DBOA 4XONA 3GQ8A 4YEJA 4Z03A 4XNFA 1RU4A 4MXNA 4XM3A 4OJPA 3VMVA 3WWGA 2PYHA 4YZAA 2NZMA 4XORA 4YZXA 4XLEA 1O8JA 3VMWA 4MR0A 3T9GA 4AVZA 1O8KA 4XLFA 1QJVA 4W8TA 2O1DA 1O88A 2O04A 4U49A 1RWRA 1IB4A 4XLCA 2QX3A 2BSPA 1KCDA 2NSPA 2EWEA 4XKWA 2Z8GA 1OGMX 3EQOA 1O8EA 4I84A 2VJIA 4XOPA 3ZPPA 2INVA 4XL9A 2X6YA 2NT9A 1X0CA 1BHEA 1JRGA 3GRHA 2UVEA 1OFLA 3ZSCA 1O8DA 5C1EA 3GQ7A 4C2LA 2O17A 2X3HA 4PMHA 4XMYA 5AMVA 1JTAA 4OZYA 4W8SA 4XLHA 1PE9A 3GQ9A 2INUA 4Z05A 3VSVA 4OZZA 4URRA 1O8FA 1O8GA 2X6WA 2O0VA 1HG8A 3B90A 3KRGA 1XG2A 1QCXA 4U4BA 5C1CA 1AIRA 1EE6A 1IDJA 4OJOA 4XN0A 2NSTA 4YZ0A 1O8HA 1IDKA 4OJ6A 4XOTA 3EQNA 1H80A 1KTWA 4HWVA 2X85A 4XLAA 4OJLA 4YZQA 1OOCA 1DBGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PEC A;  3B4N A;  4Z06 A;  2PYG A;  4NK6 A;  4EW9 A;  2VJJ A;  2VBE A;  3VST A;  2NTB A;  1O8M A;  4NK8 A;  4XQF A;  1O8L A;  3VSU A;  3FY3 A;  4OJ5 A;  4XN3 A;  2NTP A;  3B8Y A;  4W8R A;  1PLU A;  2O0W A;  1OGO X;  2UVF A;  2X6X A;  1IA5 A;  3JUR A;  4YEL A;  1K5C A;  2NT6 A;  1O8I A;  3UW0 A;  2QXZ A;  1VBL A;  3SUC A;  3LMW A;  1GQ8 A;  2VBK A;  2IQ7 A;  4W8Q A;  2ODL A;  1BN8 A;  2VBM A;  4XR6 A;  1RMG A;  3GQA A;  1WMR A;  1PXZ A;  1NHC A;  2QY1 A;  2NTQ A;  4XKV A;  1CZF A;  1OFM A;  1KCC A;  1DBO A;  4XON A;  3GQ8 A;  4YEJ A;  4Z03 A;  4XNF A;  1RU4 A;  4MXN A;  4XM3 A;  4OJP A;  3VMV A;  3WWG A;  2PYH A;  4YZA A;  2NZM A;  4XOR A;  4YZX A;  4XLE A;  1O8J A;  3VMW A;  4MR0 A;  3T9G A;  4AVZ A;  1O8K A;  4XLF A;  1QJV A;  4W8T A;  2O1D A;  1O88 A;  2O04 A;  4U49 A;  1RWR A;  1IB4 A;  4XLC A;  2QX3 A;  2BSP A;  1KCD A;  2NSP A;  2EWE A;  4XKW A;  2Z8G A;  1OGM X;  3EQO A;  1O8E A;  4I84 A;  2VJI A;  4XOP A;  3ZPP A;  2INV A;  4XL9 A;  2X6Y A;  2NT9 A;  1X0C A;  1BHE A;  1JRG A;  3GRH A;  2UVE A;  1OFL A;  3ZSC A;  1O8D A;  5C1E A;  3GQ7 A;  4C2L A;  2O17 A;  2X3H A;  4PMH A;  4XMY A;  5AMV A;  1JTA A;  4OZY A;  4W8S A;  4XLH A;  1PE9 A;  3GQ9 A;  2INU A;  4Z05 A;  3VSV A;  4OZZ A;  4URR A;  1O8F A;  1O8G A;  2X6W A;  2O0V A;  1HG8 A;  3B90 A;  3KRG A;  1XG2 A;  1QCX A;  4U4B A;  5C1C A;  1AIR A;  1EE6 A;  1IDJ A;  4OJO A;  4XN0 A;  2NST A;  4YZ0 A;  1O8H A;  1IDK A;  4OJ6 A;  4XOT A;  3EQN A;  1H80 A;  1KTW A;  4HWV A;  2X85 A;  4XLA A;  4OJL A;  4YZQ A;  1OOC A;  1DBG A; 
#chains in the Genus database with same CATH topology
 2PEC A;  3B4N A;  4Z06 A;  3SZE A;  2PYG A;  2VFO A;  4NK6 A;  4YCQ A;  2VJJ A;  4EW9 A;  2VBE A;  3VST A;  3H09 A;  2NTB A;  1O8M A;  3AK5 A;  2XTY A;  3N90 A;  4NK8 A;  4XQF A;  1O8L A;  1QA1 A;  3DU1 X;  3NAW A;  1TYU A;  3NB2 A;  3VSU A;  3FY3 A;  1EA0 A;  2QZA A;  4OJ5 A;  4V02 C;  4XN3 A;  2NTP A;  2IOU G;  3B8Y A;  4W8R A;  1PLU A;  2O0W A;  1EZG A;  3SQV A;  1OGO X;  2UVF A;  2VFQ A;  2X6X A;  1IA5 A;  3JUR A;  4YEL A;  1K5C A;  2NT6 A;  1O8I A;  1QQ1 A;  3UW0 A;  1QRC A;  2QXZ A;  1VBL A;  3SUC A;  4JRA C;  3LMW A;  1GQ8 A;  1QA3 A;  2VBK A;  3SYJ A;  2IQ7 A;  1K4Z A;  4W8Q A;  2ODL A;  1BN8 A;  2VBM A;  4XR6 A;  1RMG A;  3GQA A;  2XC1 A;  1WMR A;  1PXZ A;  3SY2 A;  1NHC A;  2QY1 A;  2NTQ A;  4XKV A;  1CZF A;  1OFM A;  1KCC A;  1DBO A;  4XON A;  5JMC B;  1L1I A;  3GQ8 A;  4YEJ A;  4Z03 A;  4XNF A;  1RU4 A;  4MXN A;  3LYC A;  4XM3 A;  4OJP A;  2QYU A;  3VMV A;  3WWG A;  1OFD A;  2PYH A;  2J8I A;  2F3L A;  4YZA A;  1TSP A;  2NZM A;  4XOR A;  4YZX A;  3RIQ A;  4XLE A;  1QA2 A;  2XTW A;  1O8J A;  3P4G A;  3VMW A;  4MR0 A;  5DNS A;  2XT4 A;  3PSZ A;  3T9G A;  3LJY A;  2BM7 A;  4AVZ A;  3BH6 B;  1CLW A;  4YZQ A;  1O8K A;  4XLF A;  1QJV A;  2BM6 A;  2B0R A;  4W8T A;  1O88 A;  2O04 A;  2O1D A;  3ML3 A;  1RWR A;  4U49 A;  1IB4 A;  3N6Z A;  1OFE A;  1WXR A;  4XLC A;  4YEI A;  2QX3 A;  2BSP A;  4YFO A;  1KCD A;  2NSP A;  2EWE A;  4XKW A;  2Z8G A;  1OGM X;  3EQO A;  2VFP A;  1O8E A;  4I84 A;  2VJI A;  4XOP A;  4YC5 A;  2INV A;  1TYW A;  4XL9 A;  3ZPP A;  2X6Y A;  2NT9 A;  2BX6 A;  2W7Z A;  4OM9 A;  1DAB A;  1X0C A;  1BHE A;  1JRG A;  5JLV C;  1HF2 A;  3GRH A;  2UVE A;  1TYV A;  1OFL A;  2VFM A;  2VFN A;  3ZSC A;  1O8D A;  2XTX A;  5C1E A;  3GQ7 A;  4C2L A;  2V5I A;  2O17 A;  1QRB A;  2X3H A;  4PMH A;  4XMY A;  5AMV A;  1JTA A;  4OZY A;  1K8F A;  4KH3 A;  1LLW A;  3PET A;  4W8S A;  4XLH A;  1PE9 A;  3GQ9 A;  2INU A;  3JX8 A;  3PSS A;  4Z05 A;  3TH0 A;  3VSV A;  1LLZ A;  4OZZ A;  4URR A;  1O8F A;  1O8G A;  1LM1 A;  2X6W A;  2O0V A;  1HG8 A;  3B90 A;  3KRG A;  1XG2 A;  1QCX A;  4U4B A;  1KQ5 A;  2G0Y A;  2O6W A;  5C1C A;  1AIR A;  4OPW A;  1EE6 A;  1IDJ A;  4OJO A;  4XN0 A;  2NST A;  4YZ0 A;  1O8H A;  1IDK A;  2BM4 A;  4OJ6 A;  4XOT A;  3EQN A;  1TYX A;  1H80 A;  2BM5 A;  3BH7 B;  4YDT A;  2XT2 A;  1KTW A;  4HWV A;  2YUH A;  2X85 A;  4XLA A;  4OJL A;  2J8K A;  1OOC A;  1DBG A; 
#chains in the Genus database with same CATH homology
 2PEC A;  3B4N A;  4Z06 A;  2PYG A;  4NK6 A;  4EW9 A;  2VJJ A;  2VBE A;  3VST A;  2NTB A;  1O8M A;  4NK8 A;  4XQF A;  1O8L A;  3VSU A;  3FY3 A;  4OJ5 A;  4XN3 A;  2NTP A;  3B8Y A;  4W8R A;  1PLU A;  2O0W A;  1OGO X;  2UVF A;  2X6X A;  1IA5 A;  3JUR A;  4YEL A;  1K5C A;  2NT6 A;  1O8I A;  3UW0 A;  2QXZ A;  1VBL A;  3SUC A;  3LMW A;  1GQ8 A;  2VBK A;  2IQ7 A;  4W8Q A;  2ODL A;  1BN8 A;  2VBM A;  4XR6 A;  1RMG A;  3GQA A;  1WMR A;  1PXZ A;  1NHC A;  2QY1 A;  2NTQ A;  4XKV A;  1CZF A;  1OFM A;  1KCC A;  1DBO A;  4XON A;  3GQ8 A;  4YEJ A;  4Z03 A;  4XNF A;  1RU4 A;  4MXN A;  4XM3 A;  4OJP A;  3VMV A;  3WWG A;  2PYH A;  4YZA A;  2NZM A;  4XOR A;  4YZX A;  4XLE A;  1O8J A;  3VMW A;  4MR0 A;  3T9G A;  4AVZ A;  1O8K A;  4XLF A;  1QJV A;  4W8T A;  2O1D A;  1O88 A;  2O04 A;  4U49 A;  1RWR A;  1IB4 A;  4XLC A;  2QX3 A;  2BSP A;  1KCD A;  2NSP A;  2EWE A;  4XKW A;  2Z8G A;  1OGM X;  3EQO A;  1O8E A;  4I84 A;  2VJI A;  4XOP A;  3ZPP A;  2INV A;  4XL9 A;  2X6Y A;  2NT9 A;  1X0C A;  1BHE A;  1JRG A;  3GRH A;  2UVE A;  1OFL A;  3ZSC A;  1O8D A;  5C1E A;  3GQ7 A;  4C2L A;  2O17 A;  2X3H A;  4PMH A;  4XMY A;  5AMV A;  1JTA A;  4OZY A;  4W8S A;  4XLH A;  1PE9 A;  3GQ9 A;  2INU A;  4Z05 A;  3VSV A;  4OZZ A;  4URR A;  1O8F A;  1O8G A;  2X6W A;  2O0V A;  1HG8 A;  3B90 A;  3KRG A;  1XG2 A;  1QCX A;  4U4B A;  5C1C A;  1AIR A;  1EE6 A;  1IDJ A;  4OJO A;  4XN0 A;  2NST A;  4YZ0 A;  1O8H A;  1IDK A;  4OJ6 A;  4XOT A;  3EQN A;  1H80 A;  1KTW A;  4HWV A;  2X85 A;  4XLA A;  4OJL A;  4YZQ A;  1OOC A;  1DBG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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