1PE9A

Mutations in the t1.5 loop of pectate lyase a
Total Genus 132
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
132
sequence length
361
structure length
361
Chain Sequence
AELVSDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNGSIFSDNGSVLNGSAVDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSGKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
molecule keywords Pectate lyase A
publication title Effect of mutations in the T1.5 loop of pectate lyase A from Erwinia chrysanthemi EC16.
pubmed doi rcsb
source organism Erwinia chrysanthemi
total genus 132
structure length 361
sequence length 361
chains with identical sequence B
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2003-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1pe9A00
3VMWA 4XOTA 1PLUA 2NTQA 4XNFA 2QX3A 2EWEA 5AMVA 1IDJA 4YEJA 4OJ5A 2X6XA 3B8YA 4I84A 2VJIA 4XQFA 2X3HA 1O8DA 3GQ8A 1H80A 4XONA 4XOPA 2NSTA 3WWGA 1OOCA 2O1DA 4Z05A 1OGOX 4YZQA 3UW0A 1O8FA 1KCDA 2VBEA 2NSPA 1NHCA 3JURA 1O8EA 1XG2A 1RU4A 2NTBA 2O17A 2Z8GA 4U49A 4MXNA 4OZZA 2VBMA 1AIRA 4XN0A 2X85A 4EW9A 5C1EA 3VSTA 4XLFA 3EQOA 1O88A 1PE9A 1JRGA 1CZFA 4C2LA 1O8KA 4OZYA 4XMYA 4NK6A 1O8GA 3GQ7A 3VSVA 4XLCA 2INUA 2NT9A 3T9GA 4XLAA 1O8IA 1DBOA 1OGMX 2NTPA 1JTAA 4OJPA 2ODLA 2PECA 3B90A 4XKVA 4W8TA 2PYHA 2BSPA 1HG8A 4OJOA 3GRHA 4HWVA 4PMHA 1K5CA 2IQ7A 3SUCA 3B4NA 3VSUA 4XORA 2INVA 3KRGA 5C1CA 2O0WA 1RWRA 4XLHA 1O8HA 1RMGA 2NZMA 2O0VA 4NK8A 1IA5A 2UVFA 1X0CA 1WMRA 4XL9A 3GQAA 1EE6A 1VBLA 1IB4A 2X6YA 1O8LA 1OFMA 2NT6A 1QJVA 4W8RA 4XKWA 2X6WA 2O04A 4XR6A 4YELA 1OFLA 4XM3A 1PXZA 1KCCA 1BHEA 4W8QA 4YZXA 2PYGA 1O8MA 4YZAA 4MR0A 1DBGA 4YZ0A 1QCXA 3GQ9A 4OJLA 3ZPPA 1O8JA 2VJJA 2QY1A 3FY3A 1GQ8A 4URRA 4W8SA 4XLEA 4U4BA 4XN3A 2UVEA 3VMVA 4Z03A 3ZSCA 3LMWA 4OJ6A 1KTWA 3EQNA 4AVZA 2QXZA 2VBKA 1BN8A 4Z06A 1IDKA
chains in the Genus database with same CATH superfamily
3VMWA 1TYUA 1PLUA 2NTQA 4XOTA 2VFOA 2QX3A 4XNFA 4V02C 2EWEA 5AMVA 1IDJA 2BM7A 2YUHA 4YEJA 3N6ZA 4OJ5A 4OM9A 2X6XA 3TH0A 2BX6A 3ML3A 2W7ZA 2XT4A 2VFMA 4OPWA 1LLWA 3B8YA 4I84A 2IOUG 2VJIA 4XQFA 1QRBA 2J8KA 2X3HA 3SYJA 1O8DA 3GQ8A 1H80A 1QRCA 4XONA 2NSTA 4XOPA 3RIQA 3WWGA 1OOCA 2O1DA 4Z05A 1OGOX 4YZQA 3NB2A 3UW0A 4YEIA 3SQVA 1O8FA 2XC1A 1KCDA 2VBEA 5JLVC 2NSPA 1LM1A 3PSZA 3JURA 1NHCA 1O8EA 1XG2A 1RU4A 3BH7B 2NTBA 2O17A 2XTXA 2Z8GA 4U49A 4MXNA 1K4ZA 1OFDA 1AIRA 2VBMA 3DU1X 3PSSA 2X85A 4OZZA 4XN0A 5C1EA 1KQ5A 4XLFA 3VSTA 4EW9A 3EQOA 1WXRA 1O88A 1PE9A 1JRGA 1CZFA 3LJYA 2XTWA 4C2LA 4YDTA 1O8KA 4OZYA 4XMYA 4NK6A 1O8GA 3GQ7A 3VSVA 4XLCA 5JMCB 2INUA 2NT9A 4KH3A 3T9GA 4XLAA 1O8IA 1DBOA 1OGMX 2NTPA 1TYWA 3SY2A 2VFQA 1JTAA 3P4GA 4OJPA 3SZEA 2ODLA 2PECA 3B90A 4XKVA 2F3LA 4W8TA 2PYHA 1QA2A 2BSPA 1HG8A 4OJOA 3GRHA 4HWVA 4PMHA 1TYXA 1K5CA 2IQ7A 3SUCA 3B4NA 3VSUA 4XORA 2V5IA 2INVA 3KRGA 3AK5A 5C1CA 2O0WA 1RWRA 1TSPA 4XLHA 1O8HA 2BM4A 1RMGA 2VFNA 2NZMA 4YCQA 2VFPA 2O0VA 4NK8A 4JRAC 2UVFA 1IA5A 1EZGA 3H09A 1X0CA 1WMRA 4XL9A 3GQAA 1EE6A 1VBLA 1IB4A 3BH6B 2X6YA 2J8IA 1LLZA 2XTYA 2B0RA 3N90A 1CLWA 3PETA 1O8LA 5DNSA 1OFMA 2G0YA 1QJVA 2NT6A 4W8RA 2X6WA 2O04A 4XKWA 4XR6A 1EA0A 4YELA 2BM5A 1DABA 2BM6A 1OFLA 2QZAA 4XM3A 1PXZA 1KCCA 1BHEA 4W8QA 4YZXA 2PYGA 1O8MA 4YFOA 1QQ1A 4YZAA 4MR0A 1DBGA 4YZ0A 1QCXA 3GQ9A 4OJLA 3ZPPA 1O8JA 2VJJA 1QA3A 2QY1A 3FY3A 1GQ8A 1OFEA 4URRA 3LYCA 4W8SA 4YC5A 4XLEA 2QYUA 4U4BA 4XN3A 1TYVA 2UVEA 2O6WA 1K8FA 3VMVA 4Z03A 3ZSCA 3LMWA 4OJ6A 1KTWA 2XT2A 3EQNA 4AVZA 1QA1A 1HF2A 3NAWA 2QXZA 2VBKA 3JX8A 1BN8A 4Z06A 1L1IA 1IDKA
chains in the Genus database with same CATH topology
3VMWA 4XOTA 1PLUA 2NTQA 4XNFA 2QX3A 2EWEA 5AMVA 1IDJA 4YEJA 4OJ5A 2X6XA 3B8YA 4I84A 2VJIA 4XQFA 2X3HA 1O8DA 3GQ8A 1H80A 4XONA 4XOPA 2NSTA 3WWGA 1OOCA 2O1DA 4Z05A 1OGOX 4YZQA 3UW0A 1O8FA 1KCDA 2VBEA 2NSPA 1NHCA 3JURA 1O8EA 1XG2A 1RU4A 2NTBA 2O17A 2Z8GA 4U49A 4MXNA 4OZZA 2VBMA 1AIRA 4XN0A 2X85A 4EW9A 5C1EA 3VSTA 4XLFA 3EQOA 1O88A 1PE9A 1JRGA 1CZFA 4C2LA 1O8KA 4OZYA 4XMYA 4NK6A 1O8GA 3GQ7A 3VSVA 4XLCA 2INUA 2NT9A 3T9GA 4XLAA 1O8IA 1DBOA 1OGMX 2NTPA 1JTAA 4OJPA 2ODLA 2PECA 3B90A 4XKVA 4W8TA 2PYHA 2BSPA 1HG8A 4OJOA 3GRHA 4HWVA 4PMHA 1K5CA 2IQ7A 3SUCA 3B4NA 3VSUA 4XORA 2INVA 3KRGA 5C1CA 2O0WA 1RWRA 4XLHA 1O8HA 1RMGA 2NZMA 2O0VA 4NK8A 1IA5A 2UVFA 1X0CA 1WMRA 4XL9A 3GQAA 1EE6A 1VBLA 1IB4A 2X6YA 1O8LA 1OFMA 2NT6A 1QJVA 4W8RA 4XKWA 2X6WA 2O04A 4XR6A 4YELA 1OFLA 4XM3A 1PXZA 1KCCA 1BHEA 4W8QA 4YZXA 2PYGA 1O8MA 4YZAA 4MR0A 1DBGA 4YZ0A 1QCXA 3GQ9A 4OJLA 3ZPPA 1O8JA 2VJJA 2QY1A 3FY3A 1GQ8A 4URRA 4W8SA 4XLEA 4U4BA 4XN3A 2UVEA 3VMVA 4Z03A 3ZSCA 3LMWA 4OJ6A 1KTWA 3EQNA 4AVZA 2QXZA 2VBKA 1BN8A 4Z06A 1IDKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VMW A;  4XOT A;  1PLU A;  2NTQ A;  4XNF A;  2QX3 A;  2EWE A;  5AMV A;  1IDJ A;  4YEJ A;  4OJ5 A;  2X6X A;  3B8Y A;  4I84 A;  2VJI A;  4XQF A;  2X3H A;  1O8D A;  3GQ8 A;  1H80 A;  4XON A;  4XOP A;  2NST A;  3WWG A;  1OOC A;  2O1D A;  4Z05 A;  1OGO X;  4YZQ A;  3UW0 A;  1O8F A;  1KCD A;  2VBE A;  2NSP A;  1NHC A;  3JUR A;  1O8E A;  1XG2 A;  1RU4 A;  2NTB A;  2O17 A;  2Z8G A;  4U49 A;  4MXN A;  4OZZ A;  2VBM A;  1AIR A;  4XN0 A;  2X85 A;  4EW9 A;  5C1E A;  3VST A;  4XLF A;  3EQO A;  1O88 A;  1PE9 A;  1JRG A;  1CZF A;  4C2L A;  1O8K A;  4OZY A;  4XMY A;  4NK6 A;  1O8G A;  3GQ7 A;  3VSV A;  4XLC A;  2INU A;  2NT9 A;  3T9G A;  4XLA A;  1O8I A;  1DBO A;  1OGM X;  2NTP A;  1JTA A;  4OJP A;  2ODL A;  2PEC A;  3B90 A;  4XKV A;  4W8T A;  2PYH A;  2BSP A;  1HG8 A;  4OJO A;  3GRH A;  4HWV A;  4PMH A;  1K5C A;  2IQ7 A;  3SUC A;  3B4N A;  3VSU A;  4XOR A;  2INV A;  3KRG A;  5C1C A;  2O0W A;  1RWR A;  4XLH A;  1O8H A;  1RMG A;  2NZM A;  2O0V A;  4NK8 A;  1IA5 A;  2UVF A;  1X0C A;  1WMR A;  4XL9 A;  3GQA A;  1EE6 A;  1VBL A;  1IB4 A;  2X6Y A;  1O8L A;  1OFM A;  2NT6 A;  1QJV A;  4W8R A;  4XKW A;  2X6W A;  2O04 A;  4XR6 A;  4YEL A;  1OFL A;  4XM3 A;  1PXZ A;  1KCC A;  1BHE A;  4W8Q A;  4YZX A;  2PYG A;  1O8M A;  4YZA A;  4MR0 A;  1DBG A;  4YZ0 A;  1QCX A;  3GQ9 A;  4OJL A;  3ZPP A;  1O8J A;  2VJJ A;  2QY1 A;  3FY3 A;  1GQ8 A;  4URR A;  4W8S A;  4XLE A;  4U4B A;  4XN3 A;  2UVE A;  3VMV A;  4Z03 A;  3ZSC A;  3LMW A;  4OJ6 A;  1KTW A;  3EQN A;  4AVZ A;  2QXZ A;  2VBK A;  1BN8 A;  4Z06 A;  1IDK A; 
#chains in the Genus database with same CATH topology
 3VMW A;  1TYU A;  1PLU A;  2NTQ A;  4XOT A;  2VFO A;  2QX3 A;  4XNF A;  4V02 C;  2EWE A;  5AMV A;  1IDJ A;  2BM7 A;  2YUH A;  4YEJ A;  3N6Z A;  4OJ5 A;  4OM9 A;  2X6X A;  3TH0 A;  2BX6 A;  3ML3 A;  2W7Z A;  2XT4 A;  2VFM A;  4OPW A;  1LLW A;  3B8Y A;  4I84 A;  2IOU G;  2VJI A;  4XQF A;  1QRB A;  2J8K A;  2X3H A;  3SYJ A;  1O8D A;  3GQ8 A;  1H80 A;  1QRC A;  4XON A;  2NST A;  4XOP A;  3RIQ A;  3WWG A;  1OOC A;  2O1D A;  4Z05 A;  1OGO X;  4YZQ A;  3NB2 A;  3UW0 A;  4YEI A;  3SQV A;  1O8F A;  2XC1 A;  1KCD A;  2VBE A;  5JLV C;  2NSP A;  1LM1 A;  3PSZ A;  3JUR A;  1NHC A;  1O8E A;  1XG2 A;  1RU4 A;  3BH7 B;  2NTB A;  2O17 A;  2XTX A;  2Z8G A;  4U49 A;  4MXN A;  1K4Z A;  1OFD A;  1AIR A;  2VBM A;  3DU1 X;  3PSS A;  2X85 A;  4OZZ A;  4XN0 A;  5C1E A;  1KQ5 A;  4XLF A;  3VST A;  4EW9 A;  3EQO A;  1WXR A;  1O88 A;  1PE9 A;  1JRG A;  1CZF A;  3LJY A;  2XTW A;  4C2L A;  4YDT A;  1O8K A;  4OZY A;  4XMY A;  4NK6 A;  1O8G A;  3GQ7 A;  3VSV A;  4XLC A;  5JMC B;  2INU A;  2NT9 A;  4KH3 A;  3T9G A;  4XLA A;  1O8I A;  1DBO A;  1OGM X;  2NTP A;  1TYW A;  3SY2 A;  2VFQ A;  1JTA A;  3P4G A;  4OJP A;  3SZE A;  2ODL A;  2PEC A;  3B90 A;  4XKV A;  2F3L A;  4W8T A;  2PYH A;  1QA2 A;  2BSP A;  1HG8 A;  4OJO A;  3GRH A;  4HWV A;  4PMH A;  1TYX A;  1K5C A;  2IQ7 A;  3SUC A;  3B4N A;  3VSU A;  4XOR A;  2V5I A;  2INV A;  3KRG A;  3AK5 A;  5C1C A;  2O0W A;  1RWR A;  1TSP A;  4XLH A;  1O8H A;  2BM4 A;  1RMG A;  2VFN A;  2NZM A;  4YCQ A;  2VFP A;  2O0V A;  4NK8 A;  4JRA C;  2UVF A;  1IA5 A;  1EZG A;  3H09 A;  1X0C A;  1WMR A;  4XL9 A;  3GQA A;  1EE6 A;  1VBL A;  1IB4 A;  3BH6 B;  2X6Y A;  2J8I A;  1LLZ A;  2XTY A;  2B0R A;  3N90 A;  1CLW A;  3PET A;  1O8L A;  5DNS A;  1OFM A;  2G0Y A;  1QJV A;  2NT6 A;  4W8R A;  2X6W A;  2O04 A;  4XKW A;  4XR6 A;  1EA0 A;  4YEL A;  2BM5 A;  1DAB A;  2BM6 A;  1OFL A;  2QZA A;  4XM3 A;  1PXZ A;  1KCC A;  1BHE A;  4W8Q A;  4YZX A;  2PYG A;  1O8M A;  4YFO A;  1QQ1 A;  4YZA A;  4MR0 A;  1DBG A;  4YZ0 A;  1QCX A;  3GQ9 A;  4OJL A;  3ZPP A;  1O8J A;  2VJJ A;  1QA3 A;  2QY1 A;  3FY3 A;  1GQ8 A;  1OFE A;  4URR A;  3LYC A;  4W8S A;  4YC5 A;  4XLE A;  2QYU A;  4U4B A;  4XN3 A;  1TYV A;  2UVE A;  2O6W A;  1K8F A;  3VMV A;  4Z03 A;  3ZSC A;  3LMW A;  4OJ6 A;  1KTW A;  2XT2 A;  3EQN A;  4AVZ A;  1QA1 A;  1HF2 A;  3NAW A;  2QXZ A;  2VBK A;  3JX8 A;  1BN8 A;  4Z06 A;  1L1I A;  1IDK A; 
#chains in the Genus database with same CATH homology
 3VMW A;  4XOT A;  1PLU A;  2NTQ A;  4XNF A;  2QX3 A;  2EWE A;  5AMV A;  1IDJ A;  4YEJ A;  4OJ5 A;  2X6X A;  3B8Y A;  4I84 A;  2VJI A;  4XQF A;  2X3H A;  1O8D A;  3GQ8 A;  1H80 A;  4XON A;  4XOP A;  2NST A;  3WWG A;  1OOC A;  2O1D A;  4Z05 A;  1OGO X;  4YZQ A;  3UW0 A;  1O8F A;  1KCD A;  2VBE A;  2NSP A;  1NHC A;  3JUR A;  1O8E A;  1XG2 A;  1RU4 A;  2NTB A;  2O17 A;  2Z8G A;  4U49 A;  4MXN A;  4OZZ A;  2VBM A;  1AIR A;  4XN0 A;  2X85 A;  4EW9 A;  5C1E A;  3VST A;  4XLF A;  3EQO A;  1O88 A;  1PE9 A;  1JRG A;  1CZF A;  4C2L A;  1O8K A;  4OZY A;  4XMY A;  4NK6 A;  1O8G A;  3GQ7 A;  3VSV A;  4XLC A;  2INU A;  2NT9 A;  3T9G A;  4XLA A;  1O8I A;  1DBO A;  1OGM X;  2NTP A;  1JTA A;  4OJP A;  2ODL A;  2PEC A;  3B90 A;  4XKV A;  4W8T A;  2PYH A;  2BSP A;  1HG8 A;  4OJO A;  3GRH A;  4HWV A;  4PMH A;  1K5C A;  2IQ7 A;  3SUC A;  3B4N A;  3VSU A;  4XOR A;  2INV A;  3KRG A;  5C1C A;  2O0W A;  1RWR A;  4XLH A;  1O8H A;  1RMG A;  2NZM A;  2O0V A;  4NK8 A;  1IA5 A;  2UVF A;  1X0C A;  1WMR A;  4XL9 A;  3GQA A;  1EE6 A;  1VBL A;  1IB4 A;  2X6Y A;  1O8L A;  1OFM A;  2NT6 A;  1QJV A;  4W8R A;  4XKW A;  2X6W A;  2O04 A;  4XR6 A;  4YEL A;  1OFL A;  4XM3 A;  1PXZ A;  1KCC A;  1BHE A;  4W8Q A;  4YZX A;  2PYG A;  1O8M A;  4YZA A;  4MR0 A;  1DBG A;  4YZ0 A;  1QCX A;  3GQ9 A;  4OJL A;  3ZPP A;  1O8J A;  2VJJ A;  2QY1 A;  3FY3 A;  1GQ8 A;  4URR A;  4W8S A;  4XLE A;  4U4B A;  4XN3 A;  2UVE A;  3VMV A;  4Z03 A;  3ZSC A;  3LMW A;  4OJ6 A;  1KTW A;  3EQN A;  4AVZ A;  2QXZ A;  2VBK A;  1BN8 A;  4Z06 A;  1IDK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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