1PE9A

Mutations in the t1.5 loop of pectate lyase a
Total Genus 132
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
132
sequence length
361
structure length
361
Chain Sequence
AELVSDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNGSIFSDNGSVLNGSAVDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSGKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pectate lyase A
publication title Effect of mutations in the T1.5 loop of pectate lyase A from Erwinia chrysanthemi EC16.
pubmed doi rcsb
source organism Erwinia chrysanthemi
molecule tags Lyase
total genus 132
structure length 361
sequence length 361
chains with identical sequence B
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2003-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1pe9A00
4XLHA 3EQOA 2VBKA 1JTAA 2O04A 4XKVA 1O8FA 2NTQA 3WWGA 1IDJA 5AMVA 4I84A 3UW0A 1X0CA 1H80A 1IDKA 4XL9A 2ODLA 1IA5A 4OJPA 4XMYA 1QJVA 2PYHA 2VJJA 1KCDA 4URRA 4XOTA 4XONA 2X6YA 4Z03A 1DBGA 2NTBA 1RWRA 2NTPA 4XKWA 4XLCA 3GQ8A 4W8QA 3B90A 1OGOX 1KTWA 3B8YA 1PLUA 1RU4A 3SUCA 4XORA 2Z8GA 4U4BA 5C1EA 4AVZA 3FY3A 1O8JA 4YZQA 4OJ6A 4HWVA 1O8DA 1OFMA 2NZMA 1CZFA 3ZPPA 3GRHA 2UVFA 1O8EA 1O8GA 3VSTA 4XOPA 4C2LA 1BHEA 2BSPA 1O8IA 1O8LA 1GQ8A 3ZSCA 4MXNA 2X3HA 3VSUA 4XN0A 5C1CA 1JRGA 1AIRA 2EWEA 3JURA 4OJLA 2O1DA 4XNFA 4OZZA 2NSPA 2X6XA 4YZAA 4XR6A 1QCXA 1RMGA 3KRGA 1VBLA 4U49A 2INUA 4W8RA 3VMWA 1OGMX 4YELA 4NK8A 1O8HA 1O8MA 1WMRA 2PYGA 4XQFA 3B4NA 2UVEA 4Z05A 4YEJA 1OFLA 4XLAA 3GQ7A 4Z06A 3T9GA 1IB4A 2QY1A 2VBMA 2PECA 4EW9A 4PMHA 2O0WA 1O88A 4OJOA 2INVA 4XLEA 2IQ7A 4MR0A 2VBEA 1O8KA 2VJIA 4W8TA 1BN8A 1HG8A 2NT6A 3VMVA 2X85A 1NHCA 1DBOA 3VSVA 4XLFA 2QX3A 4NK6A 3GQ9A 4XN3A 4OZYA 4OJ5A 2NSTA 4XM3A 4YZXA 2O0VA 1XG2A 1PXZA 3EQNA 3LMWA 1K5CA 1KCCA 4YZ0A 1PE9A 4W8SA 2O17A 2NT9A 2X6WA 1EE6A 3GQAA 2QXZA 1OOCA
chains in the Genus database with same CATH superfamily
1TYUA 4XLHA 3EQOA 4YEIA 2VBKA 1L1IA 5C1EA 4YCQA 1JTAA 2O04A 3TH0A 4XKVA 1O8FA 1LLWA 2NTQA 3WWGA 3AK5A 3BH6B 1IDJA 5AMVA 4I84A 3UW0A 1K8FA 1QRCA 2W7ZA 1X0CA 2BM6A 1H80A 1IDKA 2VFQA 2XT2A 4XL9A 2ODLA 4OPWA 1IA5A 4OJPA 1WXRA 4XMYA 4YFOA 1QJVA 2PYHA 2VJJA 1KCDA 4URRA 4XOTA 2XTYA 4XONA 2X6YA 2V5IA 1DBGA 2NTBA 1RWRA 2IOUG 2NTPA 4XKWA 4XLCA 3GQ8A 3BH7B 2F3LA 4W8QA 2B0RA 3B90A 3SQVA 1OGOX 1KTWA 4Z03A 3B8YA 1CLWA 2VFOA 2QYUA 1PLUA 1RU4A 3SUCA 1K4ZA 4XORA 2Z8GA 3PSZA 4U4BA 2XT4A 3FY3A 1O8JA 4V02C 1TSPA 1QRBA 4YZQA 4OJ6A 4HWVA 1O8DA 1OFMA 2NZMA 2O6WA 1CZFA 3ZPPA 3SZEA 3GRHA 2UVFA 1O8EA 1OFEA 1O8GA 3VSTA 4XOPA 4C2LA 1BHEA 2BSPA 2XC1A 1O8IA 1QA3A 1LLZA 2BM5A 1O8LA 3P4GA 2VFNA 1GQ8A 3ZSCA 3LJYA 4MXNA 2X3HA 3VSUA 4XN0A 3H09A 5C1CA 1JRGA 4YDTA 1AIRA 2EWEA 1HF2A 3JURA 4OJLA 2O1DA 2XTXA 4XNFA 1QQ1A 2NSPA 4OZZA 4KH3A 2X6XA 4YZAA 3RIQA 2VFPA 3N90A 3NAWA 4XR6A 1QCXA 1RMGA 3KRGA 1VBLA 4U49A 2INUA 1QA1A 4W8RA 3VMWA 2J8IA 1TYXA 1OGMX 4YELA 1DABA 4NK8A 1O8HA 1O8MA 1WMRA 2PYGA 4XQFA 3B4NA 4YC5A 2UVEA 4Z05A 4YEJA 1OFLA 4XLAA 3GQ7A 4Z06A 3DU1X 3T9GA 1IB4A 3ML3A 2QY1A 2VBMA 2PECA 3N6ZA 4JRAC 4PMHA 2O0WA 5DNSA 4EW9A 1O88A 1TYWA 4OJOA 2INVA 4XLEA 2IQ7A 5JMCB 2YUHA 2VBEA 1O8KA 2XTWA 3NB2A 2VJIA 4MR0A 1BN8A 4W8TA 2BX6A 1HG8A 2NT6A 3SY2A 1QA2A 1EA0A 3PSSA 1KQ5A 3VMVA 1EZGA 2X85A 3SYJA 5JLVC 1NHCA 1DBOA 3VSVA 1OFDA 2QX3A 4NK6A 3GQ9A 4XLFA 4XN3A 3PETA 4OZYA 4OM9A 4OJ5A 2NSTA 4XM3A 3JX8A 4YZXA 1TYVA 2O0VA 2J8KA 1XG2A 1PXZA 3EQNA 3LMWA 2VFMA 2QZAA 1K5CA 1KCCA 2G0YA 4YZ0A 1PE9A 4W8SA 2O17A 3LYCA 2NT9A 4AVZA 2X6WA 1LM1A 1EE6A 3GQAA 2BM4A 2QXZA 1OOCA 2BM7A
chains in the Genus database with same CATH topology
4XLHA 3EQOA 2VBKA 1JTAA 2O04A 4XKVA 1O8FA 2NTQA 3WWGA 1IDJA 5AMVA 4I84A 3UW0A 1X0CA 1H80A 1IDKA 4XL9A 2ODLA 1IA5A 4OJPA 4XMYA 1QJVA 2PYHA 2VJJA 1KCDA 4URRA 4XOTA 4XONA 2X6YA 4Z03A 1DBGA 2NTBA 1RWRA 2NTPA 4XKWA 4XLCA 3GQ8A 4W8QA 3B90A 1OGOX 1KTWA 3B8YA 1PLUA 1RU4A 3SUCA 4XORA 2Z8GA 4U4BA 5C1EA 4AVZA 3FY3A 1O8JA 4YZQA 4OJ6A 4HWVA 1O8DA 1OFMA 2NZMA 1CZFA 3ZPPA 3GRHA 2UVFA 1O8EA 1O8GA 3VSTA 4XOPA 4C2LA 1BHEA 2BSPA 1O8IA 1O8LA 1GQ8A 3ZSCA 4MXNA 2X3HA 3VSUA 4XN0A 5C1CA 1JRGA 1AIRA 2EWEA 3JURA 4OJLA 2O1DA 4XNFA 4OZZA 2NSPA 2X6XA 4YZAA 4XR6A 1QCXA 1RMGA 3KRGA 1VBLA 4U49A 2INUA 4W8RA 3VMWA 1OGMX 4YELA 4NK8A 1O8HA 1O8MA 1WMRA 2PYGA 4XQFA 3B4NA 2UVEA 4Z05A 4YEJA 1OFLA 4XLAA 3GQ7A 4Z06A 3T9GA 1IB4A 2QY1A 2VBMA 2PECA 4EW9A 4PMHA 2O0WA 1O88A 4OJOA 2INVA 4XLEA 2IQ7A 4MR0A 2VBEA 1O8KA 2VJIA 4W8TA 1BN8A 1HG8A 2NT6A 3VMVA 2X85A 1NHCA 1DBOA 3VSVA 4XLFA 2QX3A 4NK6A 3GQ9A 4XN3A 4OZYA 4OJ5A 2NSTA 4XM3A 4YZXA 2O0VA 1XG2A 1PXZA 3EQNA 3LMWA 1K5CA 1KCCA 4YZ0A 1PE9A 4W8SA 2O17A 2NT9A 2X6WA 1EE6A 3GQAA 2QXZA 1OOCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XLH A;  3EQO A;  2VBK A;  1JTA A;  2O04 A;  4XKV A;  1O8F A;  2NTQ A;  3WWG A;  1IDJ A;  5AMV A;  4I84 A;  3UW0 A;  1X0C A;  1H80 A;  1IDK A;  4XL9 A;  2ODL A;  1IA5 A;  4OJP A;  4XMY A;  1QJV A;  2PYH A;  2VJJ A;  1KCD A;  4URR A;  4XOT A;  4XON A;  2X6Y A;  4Z03 A;  1DBG A;  2NTB A;  1RWR A;  2NTP A;  4XKW A;  4XLC A;  3GQ8 A;  4W8Q A;  3B90 A;  1OGO X;  1KTW A;  3B8Y A;  1PLU A;  1RU4 A;  3SUC A;  4XOR A;  2Z8G A;  4U4B A;  5C1E A;  4AVZ A;  3FY3 A;  1O8J A;  4YZQ A;  4OJ6 A;  4HWV A;  1O8D A;  1OFM A;  2NZM A;  1CZF A;  3ZPP A;  3GRH A;  2UVF A;  1O8E A;  1O8G A;  3VST A;  4XOP A;  4C2L A;  1BHE A;  2BSP A;  1O8I A;  1O8L A;  1GQ8 A;  3ZSC A;  4MXN A;  2X3H A;  3VSU A;  4XN0 A;  5C1C A;  1JRG A;  1AIR A;  2EWE A;  3JUR A;  4OJL A;  2O1D A;  4XNF A;  4OZZ A;  2NSP A;  2X6X A;  4YZA A;  4XR6 A;  1QCX A;  1RMG A;  3KRG A;  1VBL A;  4U49 A;  2INU A;  4W8R A;  3VMW A;  1OGM X;  4YEL A;  4NK8 A;  1O8H A;  1O8M A;  1WMR A;  2PYG A;  4XQF A;  3B4N A;  2UVE A;  4Z05 A;  4YEJ A;  1OFL A;  4XLA A;  3GQ7 A;  4Z06 A;  3T9G A;  1IB4 A;  2QY1 A;  2VBM A;  2PEC A;  4EW9 A;  4PMH A;  2O0W A;  1O88 A;  4OJO A;  2INV A;  4XLE A;  2IQ7 A;  4MR0 A;  2VBE A;  1O8K A;  2VJI A;  4W8T A;  1BN8 A;  1HG8 A;  2NT6 A;  3VMV A;  2X85 A;  1NHC A;  1DBO A;  3VSV A;  4XLF A;  2QX3 A;  4NK6 A;  3GQ9 A;  4XN3 A;  4OZY A;  4OJ5 A;  2NST A;  4XM3 A;  4YZX A;  2O0V A;  1XG2 A;  1PXZ A;  3EQN A;  3LMW A;  1K5C A;  1KCC A;  4YZ0 A;  1PE9 A;  4W8S A;  2O17 A;  2NT9 A;  2X6W A;  1EE6 A;  3GQA A;  2QXZ A;  1OOC A; 
#chains in the Genus database with same CATH topology
 1TYU A;  4XLH A;  3EQO A;  4YEI A;  2VBK A;  1L1I A;  5C1E A;  4YCQ A;  1JTA A;  2O04 A;  3TH0 A;  4XKV A;  1O8F A;  1LLW A;  2NTQ A;  3WWG A;  3AK5 A;  3BH6 B;  1IDJ A;  5AMV A;  4I84 A;  3UW0 A;  1K8F A;  1QRC A;  2W7Z A;  1X0C A;  2BM6 A;  1H80 A;  1IDK A;  2VFQ A;  2XT2 A;  4XL9 A;  2ODL A;  4OPW A;  1IA5 A;  4OJP A;  1WXR A;  4XMY A;  4YFO A;  1QJV A;  2PYH A;  2VJJ A;  1KCD A;  4URR A;  4XOT A;  2XTY A;  4XON A;  2X6Y A;  2V5I A;  1DBG A;  2NTB A;  1RWR A;  2IOU G;  2NTP A;  4XKW A;  4XLC A;  3GQ8 A;  3BH7 B;  2F3L A;  4W8Q A;  2B0R A;  3B90 A;  3SQV A;  1OGO X;  1KTW A;  4Z03 A;  3B8Y A;  1CLW A;  2VFO A;  2QYU A;  1PLU A;  1RU4 A;  3SUC A;  1K4Z A;  4XOR A;  2Z8G A;  3PSZ A;  4U4B A;  2XT4 A;  3FY3 A;  1O8J A;  4V02 C;  1TSP A;  1QRB A;  4YZQ A;  4OJ6 A;  4HWV A;  1O8D A;  1OFM A;  2NZM A;  2O6W A;  1CZF A;  3ZPP A;  3SZE A;  3GRH A;  2UVF A;  1O8E A;  1OFE A;  1O8G A;  3VST A;  4XOP A;  4C2L A;  1BHE A;  2BSP A;  2XC1 A;  1O8I A;  1QA3 A;  1LLZ A;  2BM5 A;  1O8L A;  3P4G A;  2VFN A;  1GQ8 A;  3ZSC A;  3LJY A;  4MXN A;  2X3H A;  3VSU A;  4XN0 A;  3H09 A;  5C1C A;  1JRG A;  4YDT A;  1AIR A;  2EWE A;  1HF2 A;  3JUR A;  4OJL A;  2O1D A;  2XTX A;  4XNF A;  1QQ1 A;  2NSP A;  4OZZ A;  4KH3 A;  2X6X A;  4YZA A;  3RIQ A;  2VFP A;  3N90 A;  3NAW A;  4XR6 A;  1QCX A;  1RMG A;  3KRG A;  1VBL A;  4U49 A;  2INU A;  1QA1 A;  4W8R A;  3VMW A;  2J8I A;  1TYX A;  1OGM X;  4YEL A;  1DAB A;  4NK8 A;  1O8H A;  1O8M A;  1WMR A;  2PYG A;  4XQF A;  3B4N A;  4YC5 A;  2UVE A;  4Z05 A;  4YEJ A;  1OFL A;  4XLA A;  3GQ7 A;  4Z06 A;  3DU1 X;  3T9G A;  1IB4 A;  3ML3 A;  2QY1 A;  2VBM A;  2PEC A;  3N6Z A;  4JRA C;  4PMH A;  2O0W A;  5DNS A;  4EW9 A;  1O88 A;  1TYW A;  4OJO A;  2INV A;  4XLE A;  2IQ7 A;  5JMC B;  2YUH A;  2VBE A;  1O8K A;  2XTW A;  3NB2 A;  2VJI A;  4MR0 A;  1BN8 A;  4W8T A;  2BX6 A;  1HG8 A;  2NT6 A;  3SY2 A;  1QA2 A;  1EA0 A;  3PSS A;  1KQ5 A;  3VMV A;  1EZG A;  2X85 A;  3SYJ A;  5JLV C;  1NHC A;  1DBO A;  3VSV A;  1OFD A;  2QX3 A;  4NK6 A;  3GQ9 A;  4XLF A;  4XN3 A;  3PET A;  4OZY A;  4OM9 A;  4OJ5 A;  2NST A;  4XM3 A;  3JX8 A;  4YZX A;  1TYV A;  2O0V A;  2J8K A;  1XG2 A;  1PXZ A;  3EQN A;  3LMW A;  2VFM A;  2QZA A;  1K5C A;  1KCC A;  2G0Y A;  4YZ0 A;  1PE9 A;  4W8S A;  2O17 A;  3LYC A;  2NT9 A;  4AVZ A;  2X6W A;  1LM1 A;  1EE6 A;  3GQA A;  2BM4 A;  2QXZ A;  1OOC A;  2BM7 A; 
#chains in the Genus database with same CATH homology
 4XLH A;  3EQO A;  2VBK A;  1JTA A;  2O04 A;  4XKV A;  1O8F A;  2NTQ A;  3WWG A;  1IDJ A;  5AMV A;  4I84 A;  3UW0 A;  1X0C A;  1H80 A;  1IDK A;  4XL9 A;  2ODL A;  1IA5 A;  4OJP A;  4XMY A;  1QJV A;  2PYH A;  2VJJ A;  1KCD A;  4URR A;  4XOT A;  4XON A;  2X6Y A;  4Z03 A;  1DBG A;  2NTB A;  1RWR A;  2NTP A;  4XKW A;  4XLC A;  3GQ8 A;  4W8Q A;  3B90 A;  1OGO X;  1KTW A;  3B8Y A;  1PLU A;  1RU4 A;  3SUC A;  4XOR A;  2Z8G A;  4U4B A;  5C1E A;  4AVZ A;  3FY3 A;  1O8J A;  4YZQ A;  4OJ6 A;  4HWV A;  1O8D A;  1OFM A;  2NZM A;  1CZF A;  3ZPP A;  3GRH A;  2UVF A;  1O8E A;  1O8G A;  3VST A;  4XOP A;  4C2L A;  1BHE A;  2BSP A;  1O8I A;  1O8L A;  1GQ8 A;  3ZSC A;  4MXN A;  2X3H A;  3VSU A;  4XN0 A;  5C1C A;  1JRG A;  1AIR A;  2EWE A;  3JUR A;  4OJL A;  2O1D A;  4XNF A;  4OZZ A;  2NSP A;  2X6X A;  4YZA A;  4XR6 A;  1QCX A;  1RMG A;  3KRG A;  1VBL A;  4U49 A;  2INU A;  4W8R A;  3VMW A;  1OGM X;  4YEL A;  4NK8 A;  1O8H A;  1O8M A;  1WMR A;  2PYG A;  4XQF A;  3B4N A;  2UVE A;  4Z05 A;  4YEJ A;  1OFL A;  4XLA A;  3GQ7 A;  4Z06 A;  3T9G A;  1IB4 A;  2QY1 A;  2VBM A;  2PEC A;  4EW9 A;  4PMH A;  2O0W A;  1O88 A;  4OJO A;  2INV A;  4XLE A;  2IQ7 A;  4MR0 A;  2VBE A;  1O8K A;  2VJI A;  4W8T A;  1BN8 A;  1HG8 A;  2NT6 A;  3VMV A;  2X85 A;  1NHC A;  1DBO A;  3VSV A;  4XLF A;  2QX3 A;  4NK6 A;  3GQ9 A;  4XN3 A;  4OZY A;  4OJ5 A;  2NST A;  4XM3 A;  4YZX A;  2O0V A;  1XG2 A;  1PXZ A;  3EQN A;  3LMW A;  1K5C A;  1KCC A;  4YZ0 A;  1PE9 A;  4W8S A;  2O17 A;  2NT9 A;  2X6W A;  1EE6 A;  3GQA A;  2QXZ A;  1OOC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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