1PE9A

Mutations in the t1.5 loop of pectate lyase a
Total Genus 132
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
132
sequence length
361
structure length
361
Chain Sequence
AELVSDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNGSIFSDNGSVLNGSAVDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSGKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pectate lyase A
publication title Effect of mutations in the T1.5 loop of pectate lyase A from Erwinia chrysanthemi EC16.
pubmed doi rcsb
source organism Erwinia chrysanthemi
molecule tags Lyase
total genus 132
structure length 361
sequence length 361
chains with identical sequence B
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2003-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1pe9A00
2O0WA 3VSTA 4U4BA 4YZAA 2VBKA 3VMVA 4Z03A 4XN3A 1QJVA 2NT9A 3T9GA 1OGOX 1O8EA 3VSVA 1DBGA 2NTBA 4XLEA 1RMGA 2QY1A 1O88A 1RU4A 1OFMA 4HWVA 4OZYA 4XKWA 1XG2A 2Z8GA 4Z05A 1K5CA 3SUCA 1RWRA 1IA5A 1DBOA 2INVA 4OJLA 1JTAA 4OJOA 4U49A 4XMYA 5C1EA 1EE6A 3ZSCA 4YZXA 1WMRA 5AMVA 4PMHA 1O8JA 1IDKA 2ODLA 2UVEA 4OJ5A 1O8IA 2EWEA 4XNFA 3LMWA 4YELA 1O8DA 4W8TA 4OZZA 4XOTA 4OJPA 4NK8A 4XOPA 1O8KA 2INUA 4YZQA 4XONA 2PYHA 1AIRA 4AVZA 3GQ8A 4XN0A 2PECA 3B4NA 2BSPA 2O0VA 2PYGA 1O8GA 4MR0A 1KTWA 3VSUA 4EW9A 1IB4A 4XLHA 1O8LA 3EQNA 3FY3A 4YEJA 1O8MA 3EQOA 4XQFA 1BN8A 3GQ9A 4XM3A 2O04A 3WWGA 1X0CA 4YZ0A 3GQAA 1KCCA 1GQ8A 4I84A 2X85A 1PLUA 2VJIA 1KCDA 3B90A 2UVFA 2NZMA 4W8QA 2X3HA 1IDJA 4C2LA 2NSTA 1OOCA 1BHEA 2O1DA 1PXZA 4XR6A 3GQ7A 3GRHA 4XORA 2X6YA 1OGMX 4NK6A 5C1CA 3B8YA 2NSPA 3ZPPA 3JURA 4URRA 4W8SA 1JRGA 2VJJA 4XLAA 1O8FA 2QXZA 1CZFA 3UW0A 1QCXA 3KRGA 4MXNA 2X6XA 3VMWA 1H80A 2NT6A 2VBEA 2O17A 4Z06A 2X6WA 2IQ7A 4XLCA 2NTPA 4W8RA 2QX3A 2NTQA 1NHCA 1O8HA 4OJ6A 4XKVA 1PE9A 1VBLA 1HG8A 4XL9A 4XLFA 2VBMA 1OFLA
chains in the Genus database with same CATH superfamily
2O0WA 3VSTA 4U4BA 4YZAA 2VBKA 2O6WA 3VMVA 3RIQA 3JX8A 4XN3A 1QJVA 4Z03A 3DU1X 2NT9A 3LJYA 5JMCB 3T9GA 1OGOX 1O8EA 3VSVA 1DBGA 2NTBA 4YFOA 4XLEA 1RMGA 2J8KA 1O88A 1QRBA 1RU4A 1OFMA 2QY1A 3PSSA 4HWVA 4OZYA 4XKWA 1XG2A 1TYVA 2Z8GA 3H09A 4Z05A 2XTWA 2W7ZA 4OPWA 1K5CA 2XT4A 1RWRA 3SUCA 1IA5A 3N90A 1DBOA 2INVA 4OJLA 1JTAA 4OJOA 4U49A 4XMYA 5C1EA 1EE6A 3ZSCA 2B0RA 4YZXA 1LLZA 1WMRA 4YEIA 2BM6A 5AMVA 4PMHA 1O8JA 1IDKA 1TSPA 2ODLA 2UVEA 2BM7A 4OJ5A 1O8IA 2VFPA 1EA0A 2EWEA 4XNFA 3LMWA 4YELA 1O8DA 4W8TA 4OZZA 3BH7B 4XOTA 2QZAA 4OJPA 4NK8A 4XOPA 1O8KA 3SY2A 1QA3A 2INUA 1K8FA 2BM5A 4YZQA 4XONA 4OM9A 1LLWA 2PYHA 1AIRA 4AVZA 3GQ8A 4XN0A 3ML3A 2VFMA 1OFEA 2PECA 3B4NA 1QQ1A 2BSPA 2O0VA 2PYGA 1O8GA 1TYXA 4MR0A 1KTWA 3VSUA 4EW9A 2XTXA 1EZGA 1IB4A 4XLHA 1TYUA 4YCQA 1O8LA 1K4ZA 2VFQA 3EQNA 2VFOA 3FY3A 4YEJA 5JLVC 1O8MA 3LYCA 3EQOA 4XQFA 1BN8A 3GQ9A 4XM3A 2O04A 3WWGA 1X0CA 4YZ0A 1DABA 3GQAA 1KCCA 4V02C 1GQ8A 2V5IA 2X85A 3P4GA 3BH6B 4I84A 1CLWA 2XTYA 1WXRA 2QYUA 2BM4A 2IOUG 4YC5A 1PLUA 2VJIA 2VFNA 1KCDA 3B90A 1KQ5A 2UVFA 2NZMA 3N6ZA 4W8QA 2X3HA 1IDJA 4YDTA 2YUHA 4C2LA 2NSTA 1OOCA 1BHEA 1QRCA 1PXZA 2O1DA 4XR6A 2J8IA 3GQ7A 3GRHA 4XORA 2X6YA 1OGMX 2XC1A 4NK6A 5C1CA 3B8YA 2NSPA 3ZPPA 3JURA 3SYJA 4URRA 4W8SA 1JRGA 2VJJA 4XLAA 3SZEA 1TYWA 1O8FA 2QXZA 3NB2A 4KH3A 5DNSA 3SQVA 1QA1A 1CZFA 3UW0A 1QCXA 1OFDA 3KRGA 1LM1A 4MXNA 2X6XA 1L1IA 3VMWA 1H80A 2NT6A 2VBEA 2O17A 1HF2A 4JRAC 4Z06A 2X6WA 3TH0A 1QA2A 2IQ7A 2XT2A 2BX6A 4XLCA 2NTPA 4W8RA 2F3LA 2QX3A 3PSZA 4XLFA 3PETA 2NTQA 3NAWA 1NHCA 1O8HA 4OJ6A 3AK5A 4XKVA 1PE9A 1VBLA 1HG8A 4XL9A 2G0YA 2VBMA 1OFLA
chains in the Genus database with same CATH topology
2O0WA 3VSTA 4U4BA 4YZAA 2VBKA 3VMVA 4Z03A 4XN3A 1QJVA 2NT9A 3T9GA 1OGOX 1O8EA 3VSVA 1DBGA 2NTBA 4XLEA 1RMGA 2QY1A 1O88A 1RU4A 1OFMA 4HWVA 4OZYA 4XKWA 1XG2A 2Z8GA 4Z05A 1K5CA 3SUCA 1RWRA 1IA5A 1DBOA 2INVA 4OJLA 1JTAA 4OJOA 4U49A 4XMYA 5C1EA 1EE6A 3ZSCA 4YZXA 1WMRA 5AMVA 4PMHA 1O8JA 1IDKA 2ODLA 2UVEA 4OJ5A 1O8IA 2EWEA 4XNFA 3LMWA 4YELA 1O8DA 4W8TA 4OZZA 4XOTA 4OJPA 4NK8A 4XOPA 1O8KA 2INUA 4YZQA 4XONA 2PYHA 1AIRA 4AVZA 3GQ8A 4XN0A 2PECA 3B4NA 2BSPA 2O0VA 2PYGA 1O8GA 4MR0A 1KTWA 3VSUA 4EW9A 1IB4A 4XLHA 1O8LA 3EQNA 3FY3A 4YEJA 1O8MA 3EQOA 4XQFA 1BN8A 3GQ9A 4XM3A 2O04A 3WWGA 1X0CA 4YZ0A 3GQAA 1KCCA 1GQ8A 4I84A 2X85A 1PLUA 2VJIA 1KCDA 3B90A 2UVFA 2NZMA 4W8QA 2X3HA 1IDJA 4C2LA 2NSTA 1OOCA 1BHEA 2O1DA 1PXZA 4XR6A 3GQ7A 3GRHA 4XORA 2X6YA 1OGMX 4NK6A 5C1CA 3B8YA 2NSPA 3ZPPA 3JURA 4URRA 4W8SA 1JRGA 2VJJA 4XLAA 1O8FA 2QXZA 1CZFA 3UW0A 1QCXA 3KRGA 4MXNA 2X6XA 3VMWA 1H80A 2NT6A 2VBEA 2O17A 4Z06A 2X6WA 2IQ7A 4XLCA 2NTPA 4W8RA 2QX3A 2NTQA 1NHCA 1O8HA 4OJ6A 4XKVA 1PE9A 1VBLA 1HG8A 4XL9A 4XLFA 2VBMA 1OFLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O0W A;  3VST A;  4U4B A;  4YZA A;  2VBK A;  3VMV A;  4Z03 A;  4XN3 A;  1QJV A;  2NT9 A;  3T9G A;  1OGO X;  1O8E A;  3VSV A;  1DBG A;  2NTB A;  4XLE A;  1RMG A;  2QY1 A;  1O88 A;  1RU4 A;  1OFM A;  4HWV A;  4OZY A;  4XKW A;  1XG2 A;  2Z8G A;  4Z05 A;  1K5C A;  3SUC A;  1RWR A;  1IA5 A;  1DBO A;  2INV A;  4OJL A;  1JTA A;  4OJO A;  4U49 A;  4XMY A;  5C1E A;  1EE6 A;  3ZSC A;  4YZX A;  1WMR A;  5AMV A;  4PMH A;  1O8J A;  1IDK A;  2ODL A;  2UVE A;  4OJ5 A;  1O8I A;  2EWE A;  4XNF A;  3LMW A;  4YEL A;  1O8D A;  4W8T A;  4OZZ A;  4XOT A;  4OJP A;  4NK8 A;  4XOP A;  1O8K A;  2INU A;  4YZQ A;  4XON A;  2PYH A;  1AIR A;  4AVZ A;  3GQ8 A;  4XN0 A;  2PEC A;  3B4N A;  2BSP A;  2O0V A;  2PYG A;  1O8G A;  4MR0 A;  1KTW A;  3VSU A;  4EW9 A;  1IB4 A;  4XLH A;  1O8L A;  3EQN A;  3FY3 A;  4YEJ A;  1O8M A;  3EQO A;  4XQF A;  1BN8 A;  3GQ9 A;  4XM3 A;  2O04 A;  3WWG A;  1X0C A;  4YZ0 A;  3GQA A;  1KCC A;  1GQ8 A;  4I84 A;  2X85 A;  1PLU A;  2VJI A;  1KCD A;  3B90 A;  2UVF A;  2NZM A;  4W8Q A;  2X3H A;  1IDJ A;  4C2L A;  2NST A;  1OOC A;  1BHE A;  2O1D A;  1PXZ A;  4XR6 A;  3GQ7 A;  3GRH A;  4XOR A;  2X6Y A;  1OGM X;  4NK6 A;  5C1C A;  3B8Y A;  2NSP A;  3ZPP A;  3JUR A;  4URR A;  4W8S A;  1JRG A;  2VJJ A;  4XLA A;  1O8F A;  2QXZ A;  1CZF A;  3UW0 A;  1QCX A;  3KRG A;  4MXN A;  2X6X A;  3VMW A;  1H80 A;  2NT6 A;  2VBE A;  2O17 A;  4Z06 A;  2X6W A;  2IQ7 A;  4XLC A;  2NTP A;  4W8R A;  2QX3 A;  2NTQ A;  1NHC A;  1O8H A;  4OJ6 A;  4XKV A;  1PE9 A;  1VBL A;  1HG8 A;  4XL9 A;  4XLF A;  2VBM A;  1OFL A; 
#chains in the Genus database with same CATH topology
 2O0W A;  3VST A;  4U4B A;  4YZA A;  2VBK A;  2O6W A;  3VMV A;  3RIQ A;  3JX8 A;  4XN3 A;  1QJV A;  4Z03 A;  3DU1 X;  2NT9 A;  3LJY A;  5JMC B;  3T9G A;  1OGO X;  1O8E A;  3VSV A;  1DBG A;  2NTB A;  4YFO A;  4XLE A;  1RMG A;  2J8K A;  1O88 A;  1QRB A;  1RU4 A;  1OFM A;  2QY1 A;  3PSS A;  4HWV A;  4OZY A;  4XKW A;  1XG2 A;  1TYV A;  2Z8G A;  3H09 A;  4Z05 A;  2XTW A;  2W7Z A;  4OPW A;  1K5C A;  2XT4 A;  1RWR A;  3SUC A;  1IA5 A;  3N90 A;  1DBO A;  2INV A;  4OJL A;  1JTA A;  4OJO A;  4U49 A;  4XMY A;  5C1E A;  1EE6 A;  3ZSC A;  2B0R A;  4YZX A;  1LLZ A;  1WMR A;  4YEI A;  2BM6 A;  5AMV A;  4PMH A;  1O8J A;  1IDK A;  1TSP A;  2ODL A;  2UVE A;  2BM7 A;  4OJ5 A;  1O8I A;  2VFP A;  1EA0 A;  2EWE A;  4XNF A;  3LMW A;  4YEL A;  1O8D A;  4W8T A;  4OZZ A;  3BH7 B;  4XOT A;  2QZA A;  4OJP A;  4NK8 A;  4XOP A;  1O8K A;  3SY2 A;  1QA3 A;  2INU A;  1K8F A;  2BM5 A;  4YZQ A;  4XON A;  4OM9 A;  1LLW A;  2PYH A;  1AIR A;  4AVZ A;  3GQ8 A;  4XN0 A;  3ML3 A;  2VFM A;  1OFE A;  2PEC A;  3B4N A;  1QQ1 A;  2BSP A;  2O0V A;  2PYG A;  1O8G A;  1TYX A;  4MR0 A;  1KTW A;  3VSU A;  4EW9 A;  2XTX A;  1EZG A;  1IB4 A;  4XLH A;  1TYU A;  4YCQ A;  1O8L A;  1K4Z A;  2VFQ A;  3EQN A;  2VFO A;  3FY3 A;  4YEJ A;  5JLV C;  1O8M A;  3LYC A;  3EQO A;  4XQF A;  1BN8 A;  3GQ9 A;  4XM3 A;  2O04 A;  3WWG A;  1X0C A;  4YZ0 A;  1DAB A;  3GQA A;  1KCC A;  4V02 C;  1GQ8 A;  2V5I A;  2X85 A;  3P4G A;  3BH6 B;  4I84 A;  1CLW A;  2XTY A;  1WXR A;  2QYU A;  2BM4 A;  2IOU G;  4YC5 A;  1PLU A;  2VJI A;  2VFN A;  1KCD A;  3B90 A;  1KQ5 A;  2UVF A;  2NZM A;  3N6Z A;  4W8Q A;  2X3H A;  1IDJ A;  4YDT A;  2YUH A;  4C2L A;  2NST A;  1OOC A;  1BHE A;  1QRC A;  1PXZ A;  2O1D A;  4XR6 A;  2J8I A;  3GQ7 A;  3GRH A;  4XOR A;  2X6Y A;  1OGM X;  2XC1 A;  4NK6 A;  5C1C A;  3B8Y A;  2NSP A;  3ZPP A;  3JUR A;  3SYJ A;  4URR A;  4W8S A;  1JRG A;  2VJJ A;  4XLA A;  3SZE A;  1TYW A;  1O8F A;  2QXZ A;  3NB2 A;  4KH3 A;  5DNS A;  3SQV A;  1QA1 A;  1CZF A;  3UW0 A;  1QCX A;  1OFD A;  3KRG A;  1LM1 A;  4MXN A;  2X6X A;  1L1I A;  3VMW A;  1H80 A;  2NT6 A;  2VBE A;  2O17 A;  1HF2 A;  4JRA C;  4Z06 A;  2X6W A;  3TH0 A;  1QA2 A;  2IQ7 A;  2XT2 A;  2BX6 A;  4XLC A;  2NTP A;  4W8R A;  2F3L A;  2QX3 A;  3PSZ A;  4XLF A;  3PET A;  2NTQ A;  3NAW A;  1NHC A;  1O8H A;  4OJ6 A;  3AK5 A;  4XKV A;  1PE9 A;  1VBL A;  1HG8 A;  4XL9 A;  2G0Y A;  2VBM A;  1OFL A; 
#chains in the Genus database with same CATH homology
 2O0W A;  3VST A;  4U4B A;  4YZA A;  2VBK A;  3VMV A;  4Z03 A;  4XN3 A;  1QJV A;  2NT9 A;  3T9G A;  1OGO X;  1O8E A;  3VSV A;  1DBG A;  2NTB A;  4XLE A;  1RMG A;  2QY1 A;  1O88 A;  1RU4 A;  1OFM A;  4HWV A;  4OZY A;  4XKW A;  1XG2 A;  2Z8G A;  4Z05 A;  1K5C A;  3SUC A;  1RWR A;  1IA5 A;  1DBO A;  2INV A;  4OJL A;  1JTA A;  4OJO A;  4U49 A;  4XMY A;  5C1E A;  1EE6 A;  3ZSC A;  4YZX A;  1WMR A;  5AMV A;  4PMH A;  1O8J A;  1IDK A;  2ODL A;  2UVE A;  4OJ5 A;  1O8I A;  2EWE A;  4XNF A;  3LMW A;  4YEL A;  1O8D A;  4W8T A;  4OZZ A;  4XOT A;  4OJP A;  4NK8 A;  4XOP A;  1O8K A;  2INU A;  4YZQ A;  4XON A;  2PYH A;  1AIR A;  4AVZ A;  3GQ8 A;  4XN0 A;  2PEC A;  3B4N A;  2BSP A;  2O0V A;  2PYG A;  1O8G A;  4MR0 A;  1KTW A;  3VSU A;  4EW9 A;  1IB4 A;  4XLH A;  1O8L A;  3EQN A;  3FY3 A;  4YEJ A;  1O8M A;  3EQO A;  4XQF A;  1BN8 A;  3GQ9 A;  4XM3 A;  2O04 A;  3WWG A;  1X0C A;  4YZ0 A;  3GQA A;  1KCC A;  1GQ8 A;  4I84 A;  2X85 A;  1PLU A;  2VJI A;  1KCD A;  3B90 A;  2UVF A;  2NZM A;  4W8Q A;  2X3H A;  1IDJ A;  4C2L A;  2NST A;  1OOC A;  1BHE A;  2O1D A;  1PXZ A;  4XR6 A;  3GQ7 A;  3GRH A;  4XOR A;  2X6Y A;  1OGM X;  4NK6 A;  5C1C A;  3B8Y A;  2NSP A;  3ZPP A;  3JUR A;  4URR A;  4W8S A;  1JRG A;  2VJJ A;  4XLA A;  1O8F A;  2QXZ A;  1CZF A;  3UW0 A;  1QCX A;  3KRG A;  4MXN A;  2X6X A;  3VMW A;  1H80 A;  2NT6 A;  2VBE A;  2O17 A;  4Z06 A;  2X6W A;  2IQ7 A;  4XLC A;  2NTP A;  4W8R A;  2QX3 A;  2NTQ A;  1NHC A;  1O8H A;  4OJ6 A;  4XKV A;  1PE9 A;  1VBL A;  1HG8 A;  4XL9 A;  4XLF A;  2VBM A;  1OFL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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