1PE9A

Mutations in the t1.5 loop of pectate lyase a
Total Genus 132
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
132
sequence length
361
structure length
361
Chain Sequence
AELVSDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNGSIFSDNGSVLNGSAVDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSGKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
source organism Erwinia chrysanthemi
publication title Effect of mutations in the T1.5 loop of pectate lyase A from Erwinia chrysanthemi EC16.
pubmed doi rcsb
molecule keywords Pectate lyase A
total genus 132
structure length 361
sequence length 361
chains with identical sequence B
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2003-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1pe9A00
1RMGA 3VSVA 1O8FA 3JURA 4XLAA 1RWRA 2O0WA 2ODLA 3GQ7A 1BHEA 3GQ9A 4W8TA 2IQ7A 4XR6A 1OOCA 4XLHA 1IA5A 3UW0A 3B8YA 2NTBA 4MXNA 4U4BA 4Z03A 3KRGA 4XKWA 1KTWA 3GQAA 2X85A 4XORA 1VBLA 2UVFA 3FY3A 1DBOA 4OJ5A 4OJPA 4XONA 4XL9A 4YZXA 2EWEA 1BN8A 3VSUA 4XN0A 2O17A 2QXZA 1O8EA 5C1CA 1WMRA 4NK6A 1O8HA 4YEJA 1O8JA 3VSTA 3ZSCA 4W8QA 1CZFA 2NZMA 2O1DA 2PECA 3WWGA 1RU4A 4OZZA 4YZ0A 4XLFA 1O8KA 1AIRA 4AVZA 2X6YA 1OGMX 2INVA 2QX3A 2BSPA 4YZAA 1O8LA 3VMWA 4I84A 1KCCA 4URRA 1KCDA 4XOTA 4C2LA 1NHCA 1O8IA 4W8SA 2VJIA 2O04A 1XG2A 1DBGA 4XN3A 3VMVA 4XLCA 2NT9A 2QY1A 2X3HA 4EW9A 2NSPA 1IDKA 1QCXA 2PYGA 2X6XA 5AMVA 1EE6A 1PXZA 2VBKA 2VBMA 2INUA 4YELA 4Z06A 1PLUA 4XM3A 1IB4A 1H80A 3ZPPA 1JRGA 4NK8A 2X6WA 4XMYA 2UVEA 2VJJA 2NTQA 4XQFA 3B90A 1QJVA 2NTPA 1PE9A 3GQ8A 4OZYA 4XNFA 1K5CA 1OFLA 3LMWA 4OJLA 1IDJA 3T9GA 1O8DA 4W8RA 4PMHA 5C1EA 2Z8GA 1O88A 1O8MA 2NT6A 3EQNA 1O8GA 3GRHA 4OJOA 2NSTA 4XOPA 4U49A 3B4NA 1OGOX 4HWVA 4MR0A 1GQ8A 4Z05A 4YZQA 1HG8A 4XKVA 2O0VA 2PYHA 4XLEA 4OJ6A 3SUCA 3EQOA 1OFMA 1X0CA 1JTAA 2VBEA
chains in the Genus database with same CATH superfamily
1RMGA 4V02C 3VSVA 1CLWA 1O8FA 2BX6A 2XTXA 3JURA 1RWRA 4XLAA 2O0WA 2QYUA 1K8FA 2ODLA 3GQ7A 1BHEA 2V5IA 3GQ9A 4W8TA 2IQ7A 4XR6A 1OOCA 4XLHA 1IA5A 2VFPA 3UW0A 3B8YA 2NTBA 2XC1A 4MXNA 1QRBA 4U4BA 4Z03A 3KRGA 3P4GA 4XKWA 1KTWA 3GQAA 2X85A 4XORA 1VBLA 2UVFA 2VFMA 3FY3A 1DBOA 3H09A 4YEIA 4OJ5A 4OJPA 4XONA 4XL9A 4YZXA 1QRCA 2EWEA 1BN8A 4YC5A 3VSUA 3DU1X 3ML3A 1TSPA 2O17A 2QXZA 1O8EA 4XN0A 5C1CA 2G0YA 1WMRA 4NK6A 3N90A 1O8HA 1WXRA 4YEJA 1O8JA 3VSTA 3ZSCA 3SY2A 4W8QA 1CZFA 2NZMA 2O1DA 2PECA 3SYJA 1RU4A 4OZZA 3WWGA 4XLFA 4YZ0A 1QA3A 1O8KA 1HF2A 2QZAA 2O6WA 3SZEA 1AIRA 2XTYA 2X6YA 4AVZA 1OGMX 2INVA 2QX3A 1TYUA 2BSPA 4YZAA 1O8LA 2YUHA 3VMWA 2BM5A 1KQ5A 3BH6B 4I84A 1DABA 3PSZA 2IOUG 3PSSA 1KCCA 4URRA 1KCDA 4XOTA 4C2LA 1NHCA 1O8IA 2BM4A 1OFDA 4W8SA 1QA1A 2VJIA 2J8KA 2O04A 1XG2A 1DBGA 3PETA 4XN3A 4YFOA 4XLCA 3VMVA 2NT9A 2QY1A 1TYXA 2X3HA 4EW9A 5JMCB 2NSPA 1L1IA 1EA0A 1IDKA 1QCXA 2PYGA 2X6XA 4YDTA 1EE6A 1PXZA 2VBKA 2VBMA 2INUA 4YELA 4Z06A 1EZGA 1PLUA 3SQVA 2VFOA 2BM7A 4XM3A 1IB4A 1H80A 3ZPPA 2W7ZA 1JRGA 4OM9A 2VFQA 2XTWA 3BH7B 4NK8A 2X6WA 4XMYA 2J8IA 2UVEA 2VJJA 2NTQA 5AMVA 3B90A 3LJYA 3NAWA 4XQFA 3RIQA 3LYCA 1QJVA 2NTPA 1K4ZA 3AK5A 1PE9A 3GQ8A 4OZYA 4XNFA 1K5CA 1OFLA 3LMWA 4OJLA 1IDJA 3T9GA 1O8DA 4W8RA 4PMHA 2BM6A 4JRAC 5C1EA 2Z8GA 1O88A 1LM1A 1O8MA 2NT6A 3EQNA 1TYWA 2XT4A 2XT2A 1O8GA 3GRHA 4OJOA 2NSTA 4XOPA 2F3LA 3B4NA 1OGOX 4HWVA 4U49A 4MR0A 1GQ8A 4Z05A 4YZQA 1HG8A 3TH0A 4XKVA 4OPWA 4YCQA 1QA2A 4KH3A 2O0VA 1TYVA 2PYHA 2VFNA 3JX8A 4XLEA 4OJ6A 3SUCA 5DNSA 2B0RA 3EQOA 3NB2A 1OFMA 1OFEA 3N6ZA 1X0CA 5JLVC 1JTAA 2VBEA 1LLWA 1LLZA 1QQ1A
chains in the Genus database with same CATH topology
1RMGA 3VSVA 1O8FA 3JURA 4XLAA 1RWRA 2O0WA 2ODLA 3GQ7A 1BHEA 3GQ9A 4W8TA 2IQ7A 4XR6A 1OOCA 4XLHA 1IA5A 3UW0A 3B8YA 2NTBA 4MXNA 4U4BA 4Z03A 3KRGA 4XKWA 1KTWA 3GQAA 2X85A 4XORA 1VBLA 2UVFA 3FY3A 1DBOA 4OJ5A 4OJPA 4XONA 4XL9A 4YZXA 2EWEA 1BN8A 3VSUA 4XN0A 2O17A 2QXZA 1O8EA 5C1CA 1WMRA 4NK6A 1O8HA 4YEJA 1O8JA 3VSTA 3ZSCA 4W8QA 1CZFA 2NZMA 2O1DA 2PECA 3WWGA 1RU4A 4OZZA 4YZ0A 4XLFA 1O8KA 1AIRA 4AVZA 2X6YA 1OGMX 2INVA 2QX3A 2BSPA 4YZAA 1O8LA 3VMWA 4I84A 1KCCA 4URRA 1KCDA 4XOTA 4C2LA 1NHCA 1O8IA 4W8SA 2VJIA 2O04A 1XG2A 1DBGA 4XN3A 3VMVA 4XLCA 2NT9A 2QY1A 2X3HA 4EW9A 2NSPA 1IDKA 1QCXA 2PYGA 2X6XA 5AMVA 1EE6A 1PXZA 2VBKA 2VBMA 2INUA 4YELA 4Z06A 1PLUA 4XM3A 1IB4A 1H80A 3ZPPA 1JRGA 4NK8A 2X6WA 4XMYA 2UVEA 2VJJA 2NTQA 4XQFA 3B90A 1QJVA 2NTPA 1PE9A 3GQ8A 4OZYA 4XNFA 1K5CA 1OFLA 3LMWA 4OJLA 1IDJA 3T9GA 1O8DA 4W8RA 4PMHA 5C1EA 2Z8GA 1O88A 1O8MA 2NT6A 3EQNA 1O8GA 3GRHA 4OJOA 2NSTA 4XOPA 4U49A 3B4NA 1OGOX 4HWVA 4MR0A 1GQ8A 4Z05A 4YZQA 1HG8A 4XKVA 2O0VA 2PYHA 4XLEA 4OJ6A 3SUCA 3EQOA 1OFMA 1X0CA 1JTAA 2VBEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RMG A;  3VSV A;  1O8F A;  3JUR A;  4XLA A;  1RWR A;  2O0W A;  2ODL A;  3GQ7 A;  1BHE A;  3GQ9 A;  4W8T A;  2IQ7 A;  4XR6 A;  1OOC A;  4XLH A;  1IA5 A;  3UW0 A;  3B8Y A;  2NTB A;  4MXN A;  4U4B A;  4Z03 A;  3KRG A;  4XKW A;  1KTW A;  3GQA A;  2X85 A;  4XOR A;  1VBL A;  2UVF A;  3FY3 A;  1DBO A;  4OJ5 A;  4OJP A;  4XON A;  4XL9 A;  4YZX A;  2EWE A;  1BN8 A;  3VSU A;  4XN0 A;  2O17 A;  2QXZ A;  1O8E A;  5C1C A;  1WMR A;  4NK6 A;  1O8H A;  4YEJ A;  1O8J A;  3VST A;  3ZSC A;  4W8Q A;  1CZF A;  2NZM A;  2O1D A;  2PEC A;  3WWG A;  1RU4 A;  4OZZ A;  4YZ0 A;  4XLF A;  1O8K A;  1AIR A;  4AVZ A;  2X6Y A;  1OGM X;  2INV A;  2QX3 A;  2BSP A;  4YZA A;  1O8L A;  3VMW A;  4I84 A;  1KCC A;  4URR A;  1KCD A;  4XOT A;  4C2L A;  1NHC A;  1O8I A;  4W8S A;  2VJI A;  2O04 A;  1XG2 A;  1DBG A;  4XN3 A;  3VMV A;  4XLC A;  2NT9 A;  2QY1 A;  2X3H A;  4EW9 A;  2NSP A;  1IDK A;  1QCX A;  2PYG A;  2X6X A;  5AMV A;  1EE6 A;  1PXZ A;  2VBK A;  2VBM A;  2INU A;  4YEL A;  4Z06 A;  1PLU A;  4XM3 A;  1IB4 A;  1H80 A;  3ZPP A;  1JRG A;  4NK8 A;  2X6W A;  4XMY A;  2UVE A;  2VJJ A;  2NTQ A;  4XQF A;  3B90 A;  1QJV A;  2NTP A;  1PE9 A;  3GQ8 A;  4OZY A;  4XNF A;  1K5C A;  1OFL A;  3LMW A;  4OJL A;  1IDJ A;  3T9G A;  1O8D A;  4W8R A;  4PMH A;  5C1E A;  2Z8G A;  1O88 A;  1O8M A;  2NT6 A;  3EQN A;  1O8G A;  3GRH A;  4OJO A;  2NST A;  4XOP A;  4U49 A;  3B4N A;  1OGO X;  4HWV A;  4MR0 A;  1GQ8 A;  4Z05 A;  4YZQ A;  1HG8 A;  4XKV A;  2O0V A;  2PYH A;  4XLE A;  4OJ6 A;  3SUC A;  3EQO A;  1OFM A;  1X0C A;  1JTA A;  2VBE A; 
#chains in the Genus database with same CATH topology
 1RMG A;  4V02 C;  3VSV A;  1CLW A;  1O8F A;  2BX6 A;  2XTX A;  3JUR A;  1RWR A;  4XLA A;  2O0W A;  2QYU A;  1K8F A;  2ODL A;  3GQ7 A;  1BHE A;  2V5I A;  3GQ9 A;  4W8T A;  2IQ7 A;  4XR6 A;  1OOC A;  4XLH A;  1IA5 A;  2VFP A;  3UW0 A;  3B8Y A;  2NTB A;  2XC1 A;  4MXN A;  1QRB A;  4U4B A;  4Z03 A;  3KRG A;  3P4G A;  4XKW A;  1KTW A;  3GQA A;  2X85 A;  4XOR A;  1VBL A;  2UVF A;  2VFM A;  3FY3 A;  1DBO A;  3H09 A;  4YEI A;  4OJ5 A;  4OJP A;  4XON A;  4XL9 A;  4YZX A;  1QRC A;  2EWE A;  1BN8 A;  4YC5 A;  3VSU A;  3DU1 X;  3ML3 A;  1TSP A;  2O17 A;  2QXZ A;  1O8E A;  4XN0 A;  5C1C A;  2G0Y A;  1WMR A;  4NK6 A;  3N90 A;  1O8H A;  1WXR A;  4YEJ A;  1O8J A;  3VST A;  3ZSC A;  3SY2 A;  4W8Q A;  1CZF A;  2NZM A;  2O1D A;  2PEC A;  3SYJ A;  1RU4 A;  4OZZ A;  3WWG A;  4XLF A;  4YZ0 A;  1QA3 A;  1O8K A;  1HF2 A;  2QZA A;  2O6W A;  3SZE A;  1AIR A;  2XTY A;  2X6Y A;  4AVZ A;  1OGM X;  2INV A;  2QX3 A;  1TYU A;  2BSP A;  4YZA A;  1O8L A;  2YUH A;  3VMW A;  2BM5 A;  1KQ5 A;  3BH6 B;  4I84 A;  1DAB A;  3PSZ A;  2IOU G;  3PSS A;  1KCC A;  4URR A;  1KCD A;  4XOT A;  4C2L A;  1NHC A;  1O8I A;  2BM4 A;  1OFD A;  4W8S A;  1QA1 A;  2VJI A;  2J8K A;  2O04 A;  1XG2 A;  1DBG A;  3PET A;  4XN3 A;  4YFO A;  4XLC A;  3VMV A;  2NT9 A;  2QY1 A;  1TYX A;  2X3H A;  4EW9 A;  5JMC B;  2NSP A;  1L1I A;  1EA0 A;  1IDK A;  1QCX A;  2PYG A;  2X6X A;  4YDT A;  1EE6 A;  1PXZ A;  2VBK A;  2VBM A;  2INU A;  4YEL A;  4Z06 A;  1EZG A;  1PLU A;  3SQV A;  2VFO A;  2BM7 A;  4XM3 A;  1IB4 A;  1H80 A;  3ZPP A;  2W7Z A;  1JRG A;  4OM9 A;  2VFQ A;  2XTW A;  3BH7 B;  4NK8 A;  2X6W A;  4XMY A;  2J8I A;  2UVE A;  2VJJ A;  2NTQ A;  5AMV A;  3B90 A;  3LJY A;  3NAW A;  4XQF A;  3RIQ A;  3LYC A;  1QJV A;  2NTP A;  1K4Z A;  3AK5 A;  1PE9 A;  3GQ8 A;  4OZY A;  4XNF A;  1K5C A;  1OFL A;  3LMW A;  4OJL A;  1IDJ A;  3T9G A;  1O8D A;  4W8R A;  4PMH A;  2BM6 A;  4JRA C;  5C1E A;  2Z8G A;  1O88 A;  1LM1 A;  1O8M A;  2NT6 A;  3EQN A;  1TYW A;  2XT4 A;  2XT2 A;  1O8G A;  3GRH A;  4OJO A;  2NST A;  4XOP A;  2F3L A;  3B4N A;  1OGO X;  4HWV A;  4U49 A;  4MR0 A;  1GQ8 A;  4Z05 A;  4YZQ A;  1HG8 A;  3TH0 A;  4XKV A;  4OPW A;  4YCQ A;  1QA2 A;  4KH3 A;  2O0V A;  1TYV A;  2PYH A;  2VFN A;  3JX8 A;  4XLE A;  4OJ6 A;  3SUC A;  5DNS A;  2B0R A;  3EQO A;  3NB2 A;  1OFM A;  1OFE A;  3N6Z A;  1X0C A;  5JLV C;  1JTA A;  2VBE A;  1LLW A;  1LLZ A;  1QQ1 A; 
#chains in the Genus database with same CATH homology
 1RMG A;  3VSV A;  1O8F A;  3JUR A;  4XLA A;  1RWR A;  2O0W A;  2ODL A;  3GQ7 A;  1BHE A;  3GQ9 A;  4W8T A;  2IQ7 A;  4XR6 A;  1OOC A;  4XLH A;  1IA5 A;  3UW0 A;  3B8Y A;  2NTB A;  4MXN A;  4U4B A;  4Z03 A;  3KRG A;  4XKW A;  1KTW A;  3GQA A;  2X85 A;  4XOR A;  1VBL A;  2UVF A;  3FY3 A;  1DBO A;  4OJ5 A;  4OJP A;  4XON A;  4XL9 A;  4YZX A;  2EWE A;  1BN8 A;  3VSU A;  4XN0 A;  2O17 A;  2QXZ A;  1O8E A;  5C1C A;  1WMR A;  4NK6 A;  1O8H A;  4YEJ A;  1O8J A;  3VST A;  3ZSC A;  4W8Q A;  1CZF A;  2NZM A;  2O1D A;  2PEC A;  3WWG A;  1RU4 A;  4OZZ A;  4YZ0 A;  4XLF A;  1O8K A;  1AIR A;  4AVZ A;  2X6Y A;  1OGM X;  2INV A;  2QX3 A;  2BSP A;  4YZA A;  1O8L A;  3VMW A;  4I84 A;  1KCC A;  4URR A;  1KCD A;  4XOT A;  4C2L A;  1NHC A;  1O8I A;  4W8S A;  2VJI A;  2O04 A;  1XG2 A;  1DBG A;  4XN3 A;  3VMV A;  4XLC A;  2NT9 A;  2QY1 A;  2X3H A;  4EW9 A;  2NSP A;  1IDK A;  1QCX A;  2PYG A;  2X6X A;  5AMV A;  1EE6 A;  1PXZ A;  2VBK A;  2VBM A;  2INU A;  4YEL A;  4Z06 A;  1PLU A;  4XM3 A;  1IB4 A;  1H80 A;  3ZPP A;  1JRG A;  4NK8 A;  2X6W A;  4XMY A;  2UVE A;  2VJJ A;  2NTQ A;  4XQF A;  3B90 A;  1QJV A;  2NTP A;  1PE9 A;  3GQ8 A;  4OZY A;  4XNF A;  1K5C A;  1OFL A;  3LMW A;  4OJL A;  1IDJ A;  3T9G A;  1O8D A;  4W8R A;  4PMH A;  5C1E A;  2Z8G A;  1O88 A;  1O8M A;  2NT6 A;  3EQN A;  1O8G A;  3GRH A;  4OJO A;  2NST A;  4XOP A;  4U49 A;  3B4N A;  1OGO X;  4HWV A;  4MR0 A;  1GQ8 A;  4Z05 A;  4YZQ A;  1HG8 A;  4XKV A;  2O0V A;  2PYH A;  4XLE A;  4OJ6 A;  3SUC A;  3EQO A;  1OFM A;  1X0C A;  1JTA A;  2VBE A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...