3PSSA

Crystal structure of ahqnr, the qnr protein from aeromonas hydrophila (p21 crystal form)
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
216
structure length
213
Chain Sequence
MIDCFEGVRFEQQDLEGEQFQGCRFIGCNFSWLDLAECRFVDCSFYDRESEQSCLLQGCDLREASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFANQITVSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQINEDQQQALLEQIGLIVFP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell cycle
molecule keywords Qnr
publication title Structural insights into quinolone antibiotic resistance mediated by pentapeptide repeat proteins: conserved surface loops direct the activity of a Qnr protein from a Gram-negative bacterium
pubmed doi rcsb
source organism Aeromonas hydrophila
total genus 82
structure length 213
sequence length 216
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-12-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00805 Pentapeptide Pentapeptide repeats (8 copies)
A PF13599 Pentapeptide_4 Pentapeptide repeats (9 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.80 Mainly Beta 3 Solenoid Pectate Lyase C-like E3 ubiquitin-protein ligase SopA 3pssA00
2XTWA 2QZAA 2QYUA 2XTYA 2XTXA 5DNSA 4YDTA 4YEIA 4YC5A 4YFOA 3PSSA 2XT2A 2J8KA 3DU1X 3SY2A 3PSZA 3SQVA 2XT4A 3NB2A 2O6WA 4YCQA 3NAWA
chains in the Genus database with same CATH superfamily
2VBEA 1KTWA 4XL9A 4XR6A 2XTWA 2VBKA 5AMVA 1L1IA 2NZMA 2BM7A 1AIRA 4MXNA 2QYUA 4XM3A 3GQAA 1O8FA 1PLUA 4XN3A 3VSUA 1VBLA 1KCCA 1LLWA 2PECA 3TH0A 1K4ZA 1TYWA 1QCXA 1TYXA 2XT2A 2PYGA 3PETA 3SY2A 3ZPPA 1QA2A 2IOUG 4NK8A 3WWGA 1O8DA 3T9GA 1KCDA 1O8EA 2XT4A 1OFEA 2INVA 1BHEA 2XC1A 2BSPA 1CZFA 2QXZA 2O6WA 2VFOA 4W8TA 4YELA 4U4BA 1QRBA 1LLZA 4Z05A 3GRHA 1QJVA 4AVZA 1O8HA 2VFQA 3EQNA 4XN0A 4XKVA 1HG8A 2X6WA 3B90A 2NSPA 2G0YA 2QZAA 4OPWA 3AK5A 3UW0A 1JRGA 4URRA 1OOCA 3VMVA 4XNFA 4U49A 2QY1A 2O17A 2F3LA 2ODLA 2QX3A 3GQ7A 4JRAC 4Z03A 5DNSA 3EQOA 4OJPA 1O8IA 4Z06A 4XQFA 1OFLA 1O88A 1IDKA 3B4NA 4XLHA 1QQ1A 2BX6A 4XLCA 5C1EA 2NT9A 2B0RA 2O1DA 5JMCB 1RMGA 1O8JA 4C2LA 4XOTA 4OM9A 4OZZA 4OJ6A 5JLVC 3NB2A 2PYHA 1CLWA 1H80A 2NSTA 2X85A 3GQ9A 3ML3A 4XKWA 4YCQA 3SZEA 2BM5A 1JTAA 3NAWA 1O8KA 3N6ZA 2EWEA 4NK6A 2O04A 4KH3A 1PE9A 2O0WA 1IA5A 1RWRA 1LM1A 3P4GA 2VJJA 3JX8A 4XOPA 3B8YA 4YZAA 1HF2A 2NT6A 1GQ8A 3LYCA 1QRCA 1OGMX 4YDTA 4YEIA 4W8SA 4HWVA 1OFDA 2X6YA 1O8MA 4YFOA 2VFMA 3RIQA 1OFMA 4YEJA 1QA3A 3SYJA 2J8KA 4V02C 3DU1X 3PSZA 2IQ7A 1O8LA 2V5IA 1DABA 1KQ5A 2VFPA 3SQVA 1TYUA 4OJLA 4YZ0A 2VFNA 4XORA 2O0VA 3BH7B 2BM4A 2NTQA 2W7ZA 2Z8GA 3VMWA 4XLEA 1IDJA 3H09A 1X0CA 3GQ8A 3N90A 3VSVA 3LJYA 1OGOX 1K8FA 1WMRA 2NTPA 2UVEA 2VJIA 1DBGA 4OJOA 4W8RA 4OJ5A 2XTYA 1TYVA 2XTXA 3VSTA 4EW9A 1DBOA 4I84A 1WXRA 4YZXA 1XG2A 4YZQA 5C1CA 1BN8A 1QA1A 1O8GA 4XLFA 4YC5A 1IB4A 1TSPA 1EA0A 4XONA 4XLAA 2X3HA 4XMYA 1PXZA 1EZGA 1RU4A 2NTBA 3PSSA 4PMHA 3ZSCA 1NHCA 2INUA 2BM6A 4MR0A 3JURA 2VBMA 3BH6B 1K5CA 2YUHA 3SUCA 3LMWA 4OZYA 4W8QA 2J8IA 3KRGA 1EE6A 3FY3A 2UVFA 2X6XA
chains in the Genus database with same CATH topology
2XTWA 2QZAA 2QYUA 2XTYA 2XTXA 5DNSA 4YDTA 4YEIA 4YC5A 4YFOA 3PSSA 2XT2A 2J8KA 3DU1X 3SY2A 3PSZA 3SQVA 2XT4A 3NB2A 2O6WA 4YCQA 3NAWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XTW A;  2QZA A;  2QYU A;  2XTY A;  2XTX A;  5DNS A;  4YDT A;  4YEI A;  4YC5 A;  4YFO A;  3PSS A;  2XT2 A;  2J8K A;  3DU1 X;  3SY2 A;  3PSZ A;  3SQV A;  2XT4 A;  3NB2 A;  2O6W A;  4YCQ A;  3NAW A; 
#chains in the Genus database with same CATH topology
 2VBE A;  1KTW A;  4XL9 A;  4XR6 A;  2XTW A;  2VBK A;  5AMV A;  1L1I A;  2NZM A;  2BM7 A;  1AIR A;  4MXN A;  2QYU A;  4XM3 A;  3GQA A;  1O8F A;  1PLU A;  4XN3 A;  3VSU A;  1VBL A;  1KCC A;  1LLW A;  2PEC A;  3TH0 A;  1K4Z A;  1TYW A;  1QCX A;  1TYX A;  2XT2 A;  2PYG A;  3PET A;  3SY2 A;  3ZPP A;  1QA2 A;  2IOU G;  4NK8 A;  3WWG A;  1O8D A;  3T9G A;  1KCD A;  1O8E A;  2XT4 A;  1OFE A;  2INV A;  1BHE A;  2XC1 A;  2BSP A;  1CZF A;  2QXZ A;  2O6W A;  2VFO A;  4W8T A;  4YEL A;  4U4B A;  1QRB A;  1LLZ A;  4Z05 A;  3GRH A;  1QJV A;  4AVZ A;  1O8H A;  2VFQ A;  3EQN A;  4XN0 A;  4XKV A;  1HG8 A;  2X6W A;  3B90 A;  2NSP A;  2G0Y A;  2QZA A;  4OPW A;  3AK5 A;  3UW0 A;  1JRG A;  4URR A;  1OOC A;  3VMV A;  4XNF A;  4U49 A;  2QY1 A;  2O17 A;  2F3L A;  2ODL A;  2QX3 A;  3GQ7 A;  4JRA C;  4Z03 A;  5DNS A;  3EQO A;  4OJP A;  1O8I A;  4Z06 A;  4XQF A;  1OFL A;  1O88 A;  1IDK A;  3B4N A;  4XLH A;  1QQ1 A;  2BX6 A;  4XLC A;  5C1E A;  2NT9 A;  2B0R A;  2O1D A;  5JMC B;  1RMG A;  1O8J A;  4C2L A;  4XOT A;  4OM9 A;  4OZZ A;  4OJ6 A;  5JLV C;  3NB2 A;  2PYH A;  1CLW A;  1H80 A;  2NST A;  2X85 A;  3GQ9 A;  3ML3 A;  4XKW A;  4YCQ A;  3SZE A;  2BM5 A;  1JTA A;  3NAW A;  1O8K A;  3N6Z A;  2EWE A;  4NK6 A;  2O04 A;  4KH3 A;  1PE9 A;  2O0W A;  1IA5 A;  1RWR A;  1LM1 A;  3P4G A;  2VJJ A;  3JX8 A;  4XOP A;  3B8Y A;  4YZA A;  1HF2 A;  2NT6 A;  1GQ8 A;  3LYC A;  1QRC A;  1OGM X;  4YDT A;  4YEI A;  4W8S A;  4HWV A;  1OFD A;  2X6Y A;  1O8M A;  4YFO A;  2VFM A;  3RIQ A;  1OFM A;  4YEJ A;  1QA3 A;  3SYJ A;  2J8K A;  4V02 C;  3DU1 X;  3PSZ A;  2IQ7 A;  1O8L A;  2V5I A;  1DAB A;  1KQ5 A;  2VFP A;  3SQV A;  1TYU A;  4OJL A;  4YZ0 A;  2VFN A;  4XOR A;  2O0V A;  3BH7 B;  2BM4 A;  2NTQ A;  2W7Z A;  2Z8G A;  3VMW A;  4XLE A;  1IDJ A;  3H09 A;  1X0C A;  3GQ8 A;  3N90 A;  3VSV A;  3LJY A;  1OGO X;  1K8F A;  1WMR A;  2NTP A;  2UVE A;  2VJI A;  1DBG A;  4OJO A;  4W8R A;  4OJ5 A;  2XTY A;  1TYV A;  2XTX A;  3VST A;  4EW9 A;  1DBO A;  4I84 A;  1WXR A;  4YZX A;  1XG2 A;  4YZQ A;  5C1C A;  1BN8 A;  1QA1 A;  1O8G A;  4XLF A;  4YC5 A;  1IB4 A;  1TSP A;  1EA0 A;  4XON A;  4XLA A;  2X3H A;  4XMY A;  1PXZ A;  1EZG A;  1RU4 A;  2NTB A;  3PSS A;  4PMH A;  3ZSC A;  1NHC A;  2INU A;  2BM6 A;  4MR0 A;  3JUR A;  2VBM A;  3BH6 B;  1K5C A;  2YUH A;  3SUC A;  3LMW A;  4OZY A;  4W8Q A;  2J8I A;  3KRG A;  1EE6 A;  3FY3 A;  2UVF A;  2X6X A; 
#chains in the Genus database with same CATH homology
 2XTW A;  2QZA A;  2QYU A;  2XTY A;  2XTX A;  5DNS A;  4YDT A;  4YEI A;  4YC5 A;  4YFO A;  3PSS A;  2XT2 A;  2J8K A;  3DU1 X;  3SY2 A;  3PSZ A;  3SQV A;  2XT4 A;  3NB2 A;  2O6W A;  4YCQ A;  3NAW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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