2VFOA

Low temperature structure of p22 tailspike protein fragment (109-666), mutant v125l
Total Genus 199
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
199
sequence length
555
structure length
555
Chain Sequence
QYSIEADKKFKYSLKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Bacteriophage p22
publication title Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein
rcsb
molecule keywords P22 TAILSPIKE PROTEIN, MUTANT V125L
total genus 199
structure length 555
sequence length 555
ec nomenclature ec 3.2.1.-:
pdb deposition date 2007-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2vfoA00
1TSPA 1QA2A 1QRCA 1QA3A 1QA1A 1QRBA 1QQ1A 1TYVA 1CLWA 2VFPA 1TYXA 2IOUG 3TH0A 2VFOA 1WXRA 3SZEA 1DABA 3SYJA 2V5IA 4KH3A 3RIQA 4OM9A 3H09A 1TYWA 1TYUA 2XC1A 2VFNA 2VFMA 2VFQA 3AK5A 3ML3A
chains in the Genus database with same CATH superfamily
1QA2A 1LLWA 2X6XA 3WWGA 1QA1A 2BM5A 3N6ZA 2X6YA 4XMYA 2XT2A 4XQFA 1RU4A 1QQ1A 1TYVA 2UVEA 2VBEA 2VFPA 2YUHA 2IOUG 4XOPA 2NTQA 2BM4A 3VSUA 5JMCB 1L1IA 1O8KA 2X85A 2NT6A 1OFMA 2VFOA 2J8KA 5JLVC 4XLHA 3JX8A 3B90A 2BSPA 4YEIA 2BM6A 1JRGA 1QJVA 3JURA 3NAWA 3H09A 2PYHA 4XKVA 1K4ZA 1O8HA 2XTWA 2XC1A 2VBMA 4U4BA 4YZAA 4YC5A 4XLCA 1OFEA 5AMVA 3VMVA 3AK5A 1BHEA 3GRHA 4OJOA 1O8DA 1VBLA 2BX6A 4AVZA 4YCQA 3KRGA 4OZZA 4YEJA 1RMGA 4HWVA 2QYUA 2XTYA 1QRBA 3LJYA 4OJPA 3ZPPA 1K5CA 1CLWA 2W7ZA 1PXZA 1O8FA 4XNFA 1OGOX 3LYCA 4YELA 1EA0A 1H80A 2UVFA 4U49A 3VMWA 3PETA 1RWRA 1K8FA 1OFDA 2VJJA 1IDJA 4XLFA 1HF2A 4XKWA 4OM9A 1IB4A 1LM1A 2B0RA 2VJIA 2NT9A 1NHCA 4I84A 1PLUA 2VBKA 3EQNA 5C1EA 3UW0A 1LLZA 2J8IA 1HG8A 2O0VA 4W8SA 4W8TA 1KQ5A 3SY2A 4OPWA 1O8IA 2NZMA 3SQVA 1GQ8A 4Z03A 1CZFA 4YZQA 2PYGA 1TSPA 4URRA 1QRCA 1QA3A 2O6WA 4YZXA 2IQ7A 1BN8A 3VSVA 4EW9A 1OOCA 3LMWA 1DBGA 1O8JA 4XONA 2O1DA 4YDTA 3SUCA 2EWEA 3TH0A 1KTWA 2BM7A 2O17A 3VSTA 3BH7B 2G0YA 1O8GA 1WMRA 1X0CA 2Z8GA 1DABA 4KH3A 3RIQA 2F3LA 2QY1A 4XORA 2ODLA 4W8QA 4W8RA 1KCCA 3T9GA 3EQOA 3BH6B 3NB2A 4PMHA 4NK6A 3DU1X 1EZGA 4XL9A 3GQ8A 4Z06A 4V02C 4MXNA 2VFNA 2VFMA 2QX3A 2NSTA 4YZ0A 2VFQA 1QCXA 3GQ7A 4C2LA 5DNSA 2PECA 3N90A 4XM3A 5C1CA 1IA5A 1KCDA 4NK8A 1O8MA 1XG2A 1OGMX 1JTAA 1OFLA 2NSPA 4XOTA 3P4GA 2INUA 3B4NA 3ZSCA 1IDKA 1TYXA 4XN3A 3FY3A 1O8EA 4OJ5A 1AIRA 4XLAA 1WXRA 2NTBA 3GQAA 1PE9A 4XR6A 2X3HA 3PSZA 3SZEA 2O0WA 3SYJA 2V5IA 2QZAA 2XT4A 4XLEA 2INVA 4JRAC 4MR0A 2XTXA 1O8LA 3PSSA 4YFOA 4Z05A 1TYUA 1TYWA 2O04A 4XN0A 1O88A 2NTPA 1EE6A 1DBOA 2QXZA 2X6WA 3B8YA 3GQ9A 4OZYA 4OJ6A 4OJLA 3ML3A
chains in the Genus database with same CATH topology
3N90A 1TSPA 1QA2A 1QRCA 1QA3A 1QA1A 2BM5A 3N6ZA 1QRBA 1QQ1A 1TYVA 3LJYA 4OJPA 3P4GA 1CLWA 2VFPA 2W7ZA 2YUHA 1TYXA 2IOUG 2BM4A 3LYCA 5JMCB 4OJ5A 3TH0A 2BM7A 2VFOA 3PETA 5JLVC 1WXRA 3BH7B 2G0YA 1K8FA 3JX8A 3SYJA 2V5IA 3SZEA 4KH3A 1DABA 3RIQA 1HF2A 2F3LA 4JRAC 4OM9A 3BH6B 2BM6A 2B0RA 3H09A 4OJOA 1K4ZA 1TYWA 1TYUA 2XC1A 4V02C 2J8IA 2VFNA 2VFMA 1KQ5A 2VFQA 4OPWA 3AK5A 4OJ6A 3ML3A 4OJLA 2BX6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TSP A;  1QA2 A;  1QRC A;  1QA3 A;  1QA1 A;  1QRB A;  1QQ1 A;  1TYV A;  1CLW A;  2VFP A;  1TYX A;  2IOU G;  3TH0 A;  2VFO A;  1WXR A;  3SZE A;  1DAB A;  3SYJ A;  2V5I A;  4KH3 A;  3RIQ A;  4OM9 A;  3H09 A;  1TYW A;  1TYU A;  2XC1 A;  2VFN A;  2VFM A;  2VFQ A;  3AK5 A;  3ML3 A; 
#chains in the Genus database with same CATH topology
 1QA2 A;  1LLW A;  2X6X A;  3WWG A;  1QA1 A;  2BM5 A;  3N6Z A;  2X6Y A;  4XMY A;  2XT2 A;  4XQF A;  1RU4 A;  1QQ1 A;  1TYV A;  2UVE A;  2VBE A;  2VFP A;  2YUH A;  2IOU G;  4XOP A;  2NTQ A;  2BM4 A;  3VSU A;  5JMC B;  1L1I A;  1O8K A;  2X85 A;  2NT6 A;  1OFM A;  2VFO A;  2J8K A;  5JLV C;  4XLH A;  3JX8 A;  3B90 A;  2BSP A;  4YEI A;  2BM6 A;  1JRG A;  1QJV A;  3JUR A;  3NAW A;  3H09 A;  2PYH A;  4XKV A;  1K4Z A;  1O8H A;  2XTW A;  2XC1 A;  2VBM A;  4U4B A;  4YZA A;  4YC5 A;  4XLC A;  1OFE A;  5AMV A;  3VMV A;  3AK5 A;  1BHE A;  3GRH A;  4OJO A;  1O8D A;  1VBL A;  2BX6 A;  4AVZ A;  4YCQ A;  3KRG A;  4OZZ A;  4YEJ A;  1RMG A;  4HWV A;  2QYU A;  2XTY A;  1QRB A;  3LJY A;  4OJP A;  3ZPP A;  1K5C A;  1CLW A;  2W7Z A;  1PXZ A;  1O8F A;  4XNF A;  1OGO X;  3LYC A;  4YEL A;  1EA0 A;  1H80 A;  2UVF A;  4U49 A;  3VMW A;  3PET A;  1RWR A;  1K8F A;  1OFD A;  2VJJ A;  1IDJ A;  4XLF A;  1HF2 A;  4XKW A;  4OM9 A;  1IB4 A;  1LM1 A;  2B0R A;  2VJI A;  2NT9 A;  1NHC A;  4I84 A;  1PLU A;  2VBK A;  3EQN A;  5C1E A;  3UW0 A;  1LLZ A;  2J8I A;  1HG8 A;  2O0V A;  4W8S A;  4W8T A;  1KQ5 A;  3SY2 A;  4OPW A;  1O8I A;  2NZM A;  3SQV A;  1GQ8 A;  4Z03 A;  1CZF A;  4YZQ A;  2PYG A;  1TSP A;  4URR A;  1QRC A;  1QA3 A;  2O6W A;  4YZX A;  2IQ7 A;  1BN8 A;  3VSV A;  4EW9 A;  1OOC A;  3LMW A;  1DBG A;  1O8J A;  4XON A;  2O1D A;  4YDT A;  3SUC A;  2EWE A;  3TH0 A;  1KTW A;  2BM7 A;  2O17 A;  3VST A;  3BH7 B;  2G0Y A;  1O8G A;  1WMR A;  1X0C A;  2Z8G A;  1DAB A;  4KH3 A;  3RIQ A;  2F3L A;  2QY1 A;  4XOR A;  2ODL A;  4W8Q A;  4W8R A;  1KCC A;  3T9G A;  3EQO A;  3BH6 B;  3NB2 A;  4PMH A;  4NK6 A;  3DU1 X;  1EZG A;  4XL9 A;  3GQ8 A;  4Z06 A;  4V02 C;  4MXN A;  2VFN A;  2VFM A;  2QX3 A;  2NST A;  4YZ0 A;  2VFQ A;  1QCX A;  3GQ7 A;  4C2L A;  5DNS A;  2PEC A;  3N90 A;  4XM3 A;  5C1C A;  1IA5 A;  1KCD A;  4NK8 A;  1O8M A;  1XG2 A;  1OGM X;  1JTA A;  1OFL A;  2NSP A;  4XOT A;  3P4G A;  2INU A;  3B4N A;  3ZSC A;  1IDK A;  1TYX A;  4XN3 A;  3FY3 A;  1O8E A;  4OJ5 A;  1AIR A;  4XLA A;  1WXR A;  2NTB A;  3GQA A;  1PE9 A;  4XR6 A;  2X3H A;  3PSZ A;  3SZE A;  2O0W A;  3SYJ A;  2V5I A;  2QZA A;  2XT4 A;  4XLE A;  2INV A;  4JRA C;  4MR0 A;  2XTX A;  1O8L A;  3PSS A;  4YFO A;  4Z05 A;  1TYU A;  1TYW A;  2O04 A;  4XN0 A;  1O88 A;  2NTP A;  1EE6 A;  1DBO A;  2QXZ A;  2X6W A;  3B8Y A;  3GQ9 A;  4OZY A;  4OJ6 A;  4OJL A;  3ML3 A; 
#chains in the Genus database with same CATH homology
 3N90 A;  1TSP A;  1QA2 A;  1QRC A;  1QA3 A;  1QA1 A;  2BM5 A;  3N6Z A;  1QRB A;  1QQ1 A;  1TYV A;  3LJY A;  4OJP A;  3P4G A;  1CLW A;  2VFP A;  2W7Z A;  2YUH A;  1TYX A;  2IOU G;  2BM4 A;  3LYC A;  5JMC B;  4OJ5 A;  3TH0 A;  2BM7 A;  2VFO A;  3PET A;  5JLV C;  1WXR A;  3BH7 B;  2G0Y A;  1K8F A;  3JX8 A;  3SYJ A;  2V5I A;  3SZE A;  4KH3 A;  1DAB A;  3RIQ A;  1HF2 A;  2F3L A;  4JRA C;  4OM9 A;  3BH6 B;  2BM6 A;  2B0R A;  3H09 A;  4OJO A;  1K4Z A;  1TYW A;  1TYU A;  2XC1 A;  4V02 C;  2J8I A;  2VFN A;  2VFM A;  1KQ5 A;  2VFQ A;  4OPW A;  3AK5 A;  4OJ6 A;  3ML3 A;  4OJL A;  2BX6 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...