2VFOA

Low temperature structure of p22 tailspike protein fragment (109-666), mutant v125l
Total Genus 199
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
199
sequence length
555
structure length
555
Chain Sequence
QYSIEADKKFKYSLKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords P22 TAILSPIKE PROTEIN, MUTANT V125L
publication title Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein
rcsb
source organism Bacteriophage p22
molecule tags Hydrolase
total genus 199
structure length 555
sequence length 555
ec nomenclature ec 3.2.1.-:
pdb deposition date 2007-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2vfoA00
1QQ1A 2VFPA 2IOUG 3SYJA 2V5IA 1QA2A 3SZEA 1QA3A 2VFNA 1TYUA 1TYXA 1TYWA 4OM9A 3TH0A 1TYVA 2VFMA 3ML3A 2VFOA 3H09A 1WXRA 3AK5A 3RIQA 1DABA 2VFQA 1TSPA 1QRBA 1QRCA 1QA1A 1CLWA 4KH3A 2XC1A
chains in the Genus database with same CATH superfamily
1QQ1A 2X6XA 2VFPA 4W8TA 4XQFA 1H80A 3EQNA 2V5IA 3GQ8A 4XLEA 2VBEA 4YZQA 4I84A 4V02C 2Z8GA 4YFOA 1QJVA 4C2LA 2NT6A 1TYXA 3BH7B 2O04A 3PETA 2VJJA 4XLHA 1O8KA 3T9GA 2O6WA 4OPWA 3ML3A 4XN3A 3DU1X 1EA0A 4U4BA 2O0WA 5JLVC 3AK5A 3JX8A 1JTAA 4OJLA 4YEIA 1NHCA 5JMCB 3WWGA 1KQ5A 1QRBA 2BX6A 1RMGA 1O8IA 1QA1A 3P4GA 4W8RA 4XNFA 1IB4A 1O8DA 1PE9A 4XL9A 1HF2A 2PYGA 4OJOA 2VBKA 4KH3A 4OJ6A 4XR6A 2BSPA 2XC1A 4XN0A 3ZPPA 2BM4A 4YCQA 2XT4A 4NK8A 1RU4A 1OFDA 4AVZA 4OZYA 2XTWA 1TYWA 4OM9A 2NSPA 2PECA 3LYCA 1JRGA 3B8YA 2XTYA 1VBLA 3N90A 3N6ZA 1WXRA 4OJPA 3RIQA 1LLWA 3VMVA 2QZAA 2VFQA 3FY3A 2EWEA 1QRCA 4XONA 4YDTA 1EZGA 1XG2A 1OOCA 4YELA 1IDKA 2B0RA 4XM3A 2ODLA 4NK6A 4YEJA 1GQ8A 5DNSA 2VBMA 2QYUA 4W8QA 1K5CA 2YUHA 1CZFA 2QXZA 3PSZA 1BHEA 1OFEA 1O8FA 1X0CA 2J8IA 3SYJA 1QA2A 1O8JA 1HG8A 2NTPA 1TYUA 2VFNA 2W7ZA 3JURA 4JRAC 2O1DA 1RWRA 4XLAA 3TH0A 1TYVA 4YZAA 3VSTA 2VFMA 2X6YA 4OZZA 1WMRA 2XT2A 2X6WA 4U49A 2J8KA 2QY1A 4YZ0A 1DABA 4HWVA 2O17A 3GRHA 4MXNA 1TSPA 2X3HA 1OGMX 5C1EA 2X85A 2NTBA 1QCXA 2NT9A 2NTQA 2INVA 3B90A 1KCCA 3SUCA 1DBGA 1CLWA 2QX3A 1PLUA 4XOTA 1O8GA 1BN8A 1O8MA 3LMWA 3BH6B 2F3LA 2IOUG 1O8HA 4Z06A 2IQ7A 4XORA 3SZEA 1OFMA 2XTXA 1OFLA 3KRGA 3B4NA 3NB2A 1OGOX 3NAWA 2PYHA 5C1CA 1KCDA 1QA3A 4MR0A 3ZSCA 1K4ZA 1O8LA 1L1IA 4W8SA 4XMYA 2INUA 4XKVA 4XLCA 1IA5A 1EE6A 2BM5A 2BM6A 2G0YA 1AIRA 2UVEA 4YC5A 2VFOA 1O88A 2O0VA 3H09A 4OJ5A 4XKWA 4YZXA 1K8FA 4XOPA 4XLFA 3UW0A 3VSVA 3VSUA 1PXZA 1LM1A 4URRA 4Z03A 1DBOA 2BM7A 3VMWA 1O8EA 3GQAA 4Z05A 1KTWA 5AMVA 2NZMA 2VJIA 3SQVA 2UVFA 3SY2A 4EW9A 3GQ9A 3EQOA 3PSSA 1IDJA 1LLZA 2NSTA 3LJYA 3GQ7A 4PMHA
chains in the Genus database with same CATH topology
1QQ1A 2F3LA 2BM4A 2IOUG 2J8IA 2VFPA 2V5IA 3SYJA 1QA2A 3SZEA 4V02C 1QA3A 1TYUA 2VFNA 2W7ZA 1K4ZA 4JRAC 1TYXA 1TYWA 3BH7B 3PETA 4OM9A 3LYCA 3TH0A 1TYVA 2BM5A 2BM6A 2G0YA 4OPWA 2VFMA 3LJYA 3N90A 3ML3A 2VFOA 3H09A 3N6ZA 4OJ5A 1WXRA 4OJPA 1K8FA 3JX8A 5JLVC 3AK5A 3RIQA 4OJLA 1DABA 5JMCB 2VFQA 1TSPA 1KQ5A 1QRBA 2BM7A 2BX6A 1QRCA 1QA1A 3P4GA 2B0RA 1HF2A 4OJOA 1CLWA 4KH3A 4OJ6A 2XC1A 2YUHA 3BH6B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QQ1 A;  2VFP A;  2IOU G;  3SYJ A;  2V5I A;  1QA2 A;  3SZE A;  1QA3 A;  2VFN A;  1TYU A;  1TYX A;  1TYW A;  4OM9 A;  3TH0 A;  1TYV A;  2VFM A;  3ML3 A;  2VFO A;  3H09 A;  1WXR A;  3AK5 A;  3RIQ A;  1DAB A;  2VFQ A;  1TSP A;  1QRB A;  1QRC A;  1QA1 A;  1CLW A;  4KH3 A;  2XC1 A; 
#chains in the Genus database with same CATH topology
 1QQ1 A;  2X6X A;  2VFP A;  4W8T A;  4XQF A;  1H80 A;  3EQN A;  2V5I A;  3GQ8 A;  4XLE A;  2VBE A;  4YZQ A;  4I84 A;  4V02 C;  2Z8G A;  4YFO A;  1QJV A;  4C2L A;  2NT6 A;  1TYX A;  3BH7 B;  2O04 A;  3PET A;  2VJJ A;  4XLH A;  1O8K A;  3T9G A;  2O6W A;  4OPW A;  3ML3 A;  4XN3 A;  3DU1 X;  1EA0 A;  4U4B A;  2O0W A;  5JLV C;  3AK5 A;  3JX8 A;  1JTA A;  4OJL A;  4YEI A;  1NHC A;  5JMC B;  3WWG A;  1KQ5 A;  1QRB A;  2BX6 A;  1RMG A;  1O8I A;  1QA1 A;  3P4G A;  4W8R A;  4XNF A;  1IB4 A;  1O8D A;  1PE9 A;  4XL9 A;  1HF2 A;  2PYG A;  4OJO A;  2VBK A;  4KH3 A;  4OJ6 A;  4XR6 A;  2BSP A;  2XC1 A;  4XN0 A;  3ZPP A;  2BM4 A;  4YCQ A;  2XT4 A;  4NK8 A;  1RU4 A;  1OFD A;  4AVZ A;  4OZY A;  2XTW A;  1TYW A;  4OM9 A;  2NSP A;  2PEC A;  3LYC A;  1JRG A;  3B8Y A;  2XTY A;  1VBL A;  3N90 A;  3N6Z A;  1WXR A;  4OJP A;  3RIQ A;  1LLW A;  3VMV A;  2QZA A;  2VFQ A;  3FY3 A;  2EWE A;  1QRC A;  4XON A;  4YDT A;  1EZG A;  1XG2 A;  1OOC A;  4YEL A;  1IDK A;  2B0R A;  4XM3 A;  2ODL A;  4NK6 A;  4YEJ A;  1GQ8 A;  5DNS A;  2VBM A;  2QYU A;  4W8Q A;  1K5C A;  2YUH A;  1CZF A;  2QXZ A;  3PSZ A;  1BHE A;  1OFE A;  1O8F A;  1X0C A;  2J8I A;  3SYJ A;  1QA2 A;  1O8J A;  1HG8 A;  2NTP A;  1TYU A;  2VFN A;  2W7Z A;  3JUR A;  4JRA C;  2O1D A;  1RWR A;  4XLA A;  3TH0 A;  1TYV A;  4YZA A;  3VST A;  2VFM A;  2X6Y A;  4OZZ A;  1WMR A;  2XT2 A;  2X6W A;  4U49 A;  2J8K A;  2QY1 A;  4YZ0 A;  1DAB A;  4HWV A;  2O17 A;  3GRH A;  4MXN A;  1TSP A;  2X3H A;  1OGM X;  5C1E A;  2X85 A;  2NTB A;  1QCX A;  2NT9 A;  2NTQ A;  2INV A;  3B90 A;  1KCC A;  3SUC A;  1DBG A;  1CLW A;  2QX3 A;  1PLU A;  4XOT A;  1O8G A;  1BN8 A;  1O8M A;  3LMW A;  3BH6 B;  2F3L A;  2IOU G;  1O8H A;  4Z06 A;  2IQ7 A;  4XOR A;  3SZE A;  1OFM A;  2XTX A;  1OFL A;  3KRG A;  3B4N A;  3NB2 A;  1OGO X;  3NAW A;  2PYH A;  5C1C A;  1KCD A;  1QA3 A;  4MR0 A;  3ZSC A;  1K4Z A;  1O8L A;  1L1I A;  4W8S A;  4XMY A;  2INU A;  4XKV A;  4XLC A;  1IA5 A;  1EE6 A;  2BM5 A;  2BM6 A;  2G0Y A;  1AIR A;  2UVE A;  4YC5 A;  2VFO A;  1O88 A;  2O0V A;  3H09 A;  4OJ5 A;  4XKW A;  4YZX A;  1K8F A;  4XOP A;  4XLF A;  3UW0 A;  3VSV A;  3VSU A;  1PXZ A;  1LM1 A;  4URR A;  4Z03 A;  1DBO A;  2BM7 A;  3VMW A;  1O8E A;  3GQA A;  4Z05 A;  1KTW A;  5AMV A;  2NZM A;  2VJI A;  3SQV A;  2UVF A;  3SY2 A;  4EW9 A;  3GQ9 A;  3EQO A;  3PSS A;  1IDJ A;  1LLZ A;  2NST A;  3LJY A;  3GQ7 A;  4PMH A; 
#chains in the Genus database with same CATH homology
 1QQ1 A;  2F3L A;  2BM4 A;  2IOU G;  2J8I A;  2VFP A;  2V5I A;  3SYJ A;  1QA2 A;  3SZE A;  4V02 C;  1QA3 A;  1TYU A;  2VFN A;  2W7Z A;  1K4Z A;  4JRA C;  1TYX A;  1TYW A;  3BH7 B;  3PET A;  4OM9 A;  3LYC A;  3TH0 A;  1TYV A;  2BM5 A;  2BM6 A;  2G0Y A;  4OPW A;  2VFM A;  3LJY A;  3N90 A;  3ML3 A;  2VFO A;  3H09 A;  3N6Z A;  4OJ5 A;  1WXR A;  4OJP A;  1K8F A;  3JX8 A;  5JLV C;  3AK5 A;  3RIQ A;  4OJL A;  1DAB A;  5JMC B;  2VFQ A;  1TSP A;  1KQ5 A;  1QRB A;  2BM7 A;  2BX6 A;  1QRC A;  1QA1 A;  3P4G A;  2B0R A;  1HF2 A;  4OJO A;  1CLW A;  4KH3 A;  4OJ6 A;  2XC1 A;  2YUH A;  3BH6 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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