2VFOA

Low temperature structure of p22 tailspike protein fragment (109-666), mutant v125l
Total Genus 199
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
199
sequence length
555
structure length
555
Chain Sequence
QYSIEADKKFKYSLKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords P22 TAILSPIKE PROTEIN, MUTANT V125L
publication title Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein
rcsb
source organism Bacteriophage p22
total genus 199
structure length 555
sequence length 555
ec nomenclature ec 3.2.1.-:
pdb deposition date 2007-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2vfoA00
1TYXA 1TYWA 1QRCA 1QQ1A 2VFMA 1TYUA 2VFQA 3SZEA 2XC1A 1DABA 4KH3A 2VFNA 4OM9A 2VFPA 3RIQA 1QA2A 1QA1A 1QA3A 3H09A 1CLWA 1WXRA 3ML3A 2V5IA 3SYJA 2IOUG 2VFOA 1TSPA 3TH0A 1TYVA 3AK5A 1QRBA
chains in the Genus database with same CATH superfamily
3GQAA 4XOPA 2XT2A 1DBGA 4XN3A 1O8EA 1QQ1A 2J8IA 1L1IA 4U49A 5C1EA 1KQ5A 3LJYA 4YZQA 3SZEA 3LMWA 3GRHA 3P4GA 4EW9A 4OJ5A 1OGOX 4OM9A 1O8JA 2O1DA 2XTWA 3KRGA 2O17A 3B90A 1OFLA 1O8KA 2QZAA 2PYGA 1KCCA 3VSTA 3GQ9A 1K8FA 4MR0A 1HF2A 2X3HA 2BM6A 1O8MA 1RMGA 2NZMA 3JX8A 1EE6A 2O0WA 3NAWA 2O6WA 4YDTA 3ML3A 2V5IA 2VBMA 3SYJA 3SY2A 2IOUG 4OZZA 4XORA 2W7ZA 3NB2A 2X6XA 4W8TA 3TH0A 2X6WA 1TYVA 3VMWA 1HG8A 3BH6B 1IDKA 3AK5A 1QRBA 3WWGA 1TYWA 2O0VA 3SUCA 1DBOA 1OFDA 2UVEA 1O8IA 3GQ8A 4Z06A 3UW0A 1EA0A 2QX3A 1TYUA 1OOCA 2INUA 2NSTA 2NTBA 1RWRA 2NT6A 2XC1A 4HWVA 2VFPA 3JURA 5JMCB 2X6YA 1O8LA 1OFMA 3DU1X 2QYUA 4MXNA 2INVA 1QA3A 4YZ0A 2VBEA 2ODLA 2XTYA 3VSUA 5AMVA 1OFEA 2NT9A 4XONA 3PSZA 3T9GA 1KTWA 4W8SA 1LLZA 4XKVA 4Z05A 3B8YA 1LLWA 4OJOA 2VBKA 2VFOA 1QJVA 4YFOA 5DNSA 1PE9A 2PYHA 3ZPPA 2O04A 3EQNA 1TYXA 1XG2A 1QCXA 4YEIA 3EQOA 3FY3A 2BM5A 2VJIA 4NK8A 1OGMX 4W8QA 4C2LA 2VFMA 1BN8A 1AIRA 1K4ZA 2VJJA 1PXZA 1CZFA 1X0CA 2NSPA 2QXZA 4XNFA 4JRAC 4YELA 1DABA 2EWEA 2VFNA 2XTXA 1K5CA 1VBLA 3RIQA 4PMHA 2B0RA 1QA2A 4XN0A 4XLCA 1IDJA 3ZSCA 3BH7B 2QY1A 2IQ7A 1O8GA 1IA5A 1O88A 3VSVA 4YZAA 4XOTA 4I84A 4YC5A 2G0YA 2BX6A 4XLFA 3PETA 2NTPA 4XKWA 1LM1A 4URRA 1IB4A 1KCDA 4XL9A 1RU4A 2Z8GA 2BM7A 2YUHA 4OJPA 2PECA 3SQVA 1O8DA 4OJ6A 4XLHA 1JRGA 2BM4A 3LYCA 1TSPA 4YZXA 3PSSA 1BHEA 1QRCA 3N90A 1O8HA 5C1CA 1JTAA 1NHCA 3GQ7A 1GQ8A 2VFQA 1PLUA 4XMYA 5JLVC 4OPWA 2X85A 4KH3A 4XLEA 4U4BA 2F3LA 4XQFA 3B4NA 4OZYA 4AVZA 1QA1A 4V02C 1WMRA 1H80A 1O8FA 3VMVA 4Z03A 4XM3A 2NTQA 3H09A 4YEJA 3N6ZA 1CLWA 4XR6A 1WXRA 2BSPA 2XT4A 4NK6A 4W8RA 4XLAA 2UVFA 2J8KA 4OJLA 1EZGA 4YCQA
chains in the Genus database with same CATH topology
1TYXA 1TYWA 1QRCA 1QQ1A 2BM5A 2J8IA 3N90A 2VFMA 1TYUA 1KQ5A 2VFQA 3LJYA 3SZEA 1K4ZA 3P4GA 3AK5A 2XC1A 5JLVC 1DABA 4OJ5A 4JRAC 4OPWA 4KH3A 2VFNA 4OM9A 2F3LA 2VFPA 3RIQA 5JMCB 2B0RA 1QA2A 3BH7B 1K8FA 4V02C 1HF2A 1QA1A 1QA3A 2BM6A 3JX8A 3H09A 2G0YA 3N6ZA 2BX6A 1CLWA 1WXRA 3ML3A 3PETA 2V5IA 3SYJA 2IOUG 4OJOA 2BM7A 2W7ZA 2VFOA 2YUHA 4OJPA 3TH0A 4OJLA 1QRBA 1TYVA 4OJ6A 3BH6B 2BM4A 3LYCA 1TSPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TYX A;  1TYW A;  1QRC A;  1QQ1 A;  2VFM A;  1TYU A;  2VFQ A;  3SZE A;  2XC1 A;  1DAB A;  4KH3 A;  2VFN A;  4OM9 A;  2VFP A;  3RIQ A;  1QA2 A;  1QA1 A;  1QA3 A;  3H09 A;  1CLW A;  1WXR A;  3ML3 A;  2V5I A;  3SYJ A;  2IOU G;  2VFO A;  1TSP A;  3TH0 A;  1TYV A;  3AK5 A;  1QRB A; 
#chains in the Genus database with same CATH topology
 3GQA A;  4XOP A;  2XT2 A;  1DBG A;  4XN3 A;  1O8E A;  1QQ1 A;  2J8I A;  1L1I A;  4U49 A;  5C1E A;  1KQ5 A;  3LJY A;  4YZQ A;  3SZE A;  3LMW A;  3GRH A;  3P4G A;  4EW9 A;  4OJ5 A;  1OGO X;  4OM9 A;  1O8J A;  2O1D A;  2XTW A;  3KRG A;  2O17 A;  3B90 A;  1OFL A;  1O8K A;  2QZA A;  2PYG A;  1KCC A;  3VST A;  3GQ9 A;  1K8F A;  4MR0 A;  1HF2 A;  2X3H A;  2BM6 A;  1O8M A;  1RMG A;  2NZM A;  3JX8 A;  1EE6 A;  2O0W A;  3NAW A;  2O6W A;  4YDT A;  3ML3 A;  2V5I A;  2VBM A;  3SYJ A;  3SY2 A;  2IOU G;  4OZZ A;  4XOR A;  2W7Z A;  3NB2 A;  2X6X A;  4W8T A;  3TH0 A;  2X6W A;  1TYV A;  3VMW A;  1HG8 A;  3BH6 B;  1IDK A;  3AK5 A;  1QRB A;  3WWG A;  1TYW A;  2O0V A;  3SUC A;  1DBO A;  1OFD A;  2UVE A;  1O8I A;  3GQ8 A;  4Z06 A;  3UW0 A;  1EA0 A;  2QX3 A;  1TYU A;  1OOC A;  2INU A;  2NST A;  2NTB A;  1RWR A;  2NT6 A;  2XC1 A;  4HWV A;  2VFP A;  3JUR A;  5JMC B;  2X6Y A;  1O8L A;  1OFM A;  3DU1 X;  2QYU A;  4MXN A;  2INV A;  1QA3 A;  4YZ0 A;  2VBE A;  2ODL A;  2XTY A;  3VSU A;  5AMV A;  1OFE A;  2NT9 A;  4XON A;  3PSZ A;  3T9G A;  1KTW A;  4W8S A;  1LLZ A;  4XKV A;  4Z05 A;  3B8Y A;  1LLW A;  4OJO A;  2VBK A;  2VFO A;  1QJV A;  4YFO A;  5DNS A;  1PE9 A;  2PYH A;  3ZPP A;  2O04 A;  3EQN A;  1TYX A;  1XG2 A;  1QCX A;  4YEI A;  3EQO A;  3FY3 A;  2BM5 A;  2VJI A;  4NK8 A;  1OGM X;  4W8Q A;  4C2L A;  2VFM A;  1BN8 A;  1AIR A;  1K4Z A;  2VJJ A;  1PXZ A;  1CZF A;  1X0C A;  2NSP A;  2QXZ A;  4XNF A;  4JRA C;  4YEL A;  1DAB A;  2EWE A;  2VFN A;  2XTX A;  1K5C A;  1VBL A;  3RIQ A;  4PMH A;  2B0R A;  1QA2 A;  4XN0 A;  4XLC A;  1IDJ A;  3ZSC A;  3BH7 B;  2QY1 A;  2IQ7 A;  1O8G A;  1IA5 A;  1O88 A;  3VSV A;  4YZA A;  4XOT A;  4I84 A;  4YC5 A;  2G0Y A;  2BX6 A;  4XLF A;  3PET A;  2NTP A;  4XKW A;  1LM1 A;  4URR A;  1IB4 A;  1KCD A;  4XL9 A;  1RU4 A;  2Z8G A;  2BM7 A;  2YUH A;  4OJP A;  2PEC A;  3SQV A;  1O8D A;  4OJ6 A;  4XLH A;  1JRG A;  2BM4 A;  3LYC A;  1TSP A;  4YZX A;  3PSS A;  1BHE A;  1QRC A;  3N90 A;  1O8H A;  5C1C A;  1JTA A;  1NHC A;  3GQ7 A;  1GQ8 A;  2VFQ A;  1PLU A;  4XMY A;  5JLV C;  4OPW A;  2X85 A;  4KH3 A;  4XLE A;  4U4B A;  2F3L A;  4XQF A;  3B4N A;  4OZY A;  4AVZ A;  1QA1 A;  4V02 C;  1WMR A;  1H80 A;  1O8F A;  3VMV A;  4Z03 A;  4XM3 A;  2NTQ A;  3H09 A;  4YEJ A;  3N6Z A;  1CLW A;  4XR6 A;  1WXR A;  2BSP A;  2XT4 A;  4NK6 A;  4W8R A;  4XLA A;  2UVF A;  2J8K A;  4OJL A;  1EZG A;  4YCQ A; 
#chains in the Genus database with same CATH homology
 1TYX A;  1TYW A;  1QRC A;  1QQ1 A;  2BM5 A;  2J8I A;  3N90 A;  2VFM A;  1TYU A;  1KQ5 A;  2VFQ A;  3LJY A;  3SZE A;  1K4Z A;  3P4G A;  3AK5 A;  2XC1 A;  5JLV C;  1DAB A;  4OJ5 A;  4JRA C;  4OPW A;  4KH3 A;  2VFN A;  4OM9 A;  2F3L A;  2VFP A;  3RIQ A;  5JMC B;  2B0R A;  1QA2 A;  3BH7 B;  1K8F A;  4V02 C;  1HF2 A;  1QA1 A;  1QA3 A;  2BM6 A;  3JX8 A;  3H09 A;  2G0Y A;  3N6Z A;  2BX6 A;  1CLW A;  1WXR A;  3ML3 A;  3PET A;  2V5I A;  3SYJ A;  2IOU G;  4OJO A;  2BM7 A;  2W7Z A;  2VFO A;  2YUH A;  4OJP A;  3TH0 A;  4OJL A;  1QRB A;  1TYV A;  4OJ6 A;  3BH6 B;  2BM4 A;  3LYC A;  1TSP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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