2VFOA

Low temperature structure of p22 tailspike protein fragment (109-666), mutant v125l
Total Genus 199
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
199
sequence length
555
structure length
555
Chain Sequence
QYSIEADKKFKYSLKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords P22 TAILSPIKE PROTEIN, MUTANT V125L
publication title Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein
rcsb
source organism Bacteriophage p22
molecule tags Hydrolase
total genus 199
structure length 555
sequence length 555
ec nomenclature ec 3.2.1.-:
pdb deposition date 2007-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2vfoA00
1TYXA 1QQ1A 2VFQA 1QA2A 1CLWA 2IOUG 1QA1A 1QA3A 2VFPA 1TYWA 1WXRA 2XC1A 4KH3A 3RIQA 3ML3A 1DABA 3H09A 4OM9A 3AK5A 3SYJA 3TH0A 1TSPA 1TYUA 1TYVA 2VFNA 2V5IA 2VFMA 1QRCA 2VFOA 1QRBA 3SZEA
chains in the Genus database with same CATH superfamily
1VBLA 4YEIA 4YCQA 2NT6A 4EW9A 1KTWA 2X6WA 2XT2A 2VFQA 4XLHA 1OFEA 4XORA 3ZPPA 3VMVA 4XR6A 1O8JA 1LLWA 2O6WA 2ODLA 2XTWA 2XTXA 3PSZA 4XL9A 2BM6A 1O8EA 1O8IA 5C1CA 4YEJA 1QA1A 2XC1A 3NAWA 3LYCA 1QJVA 1IDJA 2O0WA 1IA5A 1O8MA 3ZSCA 4MR0A 2Z8GA 2NZMA 4Z05A 2NSTA 1TYUA 2F3LA 2NTPA 2XTYA 3N6ZA 1O8DA 4W8SA 4U49A 4XMYA 5C1EA 3SQVA 2G0YA 2XT4A 4OJOA 2UVFA 4YC5A 3B90A 1OGMX 4MXNA 5DNSA 2B0RA 1QQ1A 2BM5A 4YELA 4AVZA 1O88A 1EZGA 1O8KA 3JX8A 3SUCA 3VMWA 4XONA 4Z03A 4YZQA 4OPWA 5AMVA 4W8TA 1WXRA 2INUA 2INVA 4U4BA 1HF2A 3RIQA 1EE6A 3ML3A 4PMHA 2NSPA 2NT9A 1OFLA 4Z06A 3H09A 1DABA 1O8LA 4OM9A 1X0CA 1RMGA 3FY3A 3AK5A 4YFOA 4OJ5A 3TH0A 1OOCA 3GQ7A 2VFNA 2NTBA 2O1DA 2O04A 4URRA 4XLEA 3VSUA 1NHCA 4JRAC 1LLZA 2BX6A 2VFOA 3PETA 1QRBA 3GQ8A 4V02C 1EA0A 4W8RA 1LM1A 1TYXA 4HWVA 2X3HA 1IDKA 2X6YA 1O8FA 1PE9A 3EQNA 4XLCA 4XLAA 3VSVA 2X6XA 2PECA 1QA2A 2VJIA 1WMRA 2BSPA 2VBMA 4OZZA 4OJPA 1CLWA 1QA3A 1JRGA 1O8GA 2QX3A 3P4GA 4OJ6A 4XN0A 3LJYA 4XOPA 3GQAA 4NK6A 2QXZA 1OGOX 1AIRA 1RU4A 3B4NA 3SY2A 2J8KA 2EWEA 4OJLA 2NTQA 3PSSA 4YZXA 1DBGA 3T9GA 3SYJA 4XNFA 3WWGA 4YDTA 1TSPA 1KCDA 1O8HA 1TYVA 2YUHA 2QYUA 2V5IA 4XOTA 1DBOA 3BH6B 3BH7B 1KQ5A 2PYGA 2W7ZA 3LMWA 3SZEA 1GQ8A 2J8IA 4I84A 3DU1X 1HG8A 1PLUA 3KRGA 4OZYA 1K8FA 1CZFA 4XQFA 4YZ0A 5JLVC 1K4ZA 1BN8A 1K5CA 1L1IA 3JURA 2IOUG 4W8QA 5JMCB 4XN3A 3VSTA 1H80A 3B8YA 2VFPA 1RWRA 1TYWA 2BM4A 1BHEA 1PXZA 2UVEA 2VJJA 2X85A 3N90A 2QY1A 1JTAA 1IB4A 2VBKA 2QZAA 2VBEA 3GQ9A 4KH3A 4XM3A 4XKVA 1OFDA 4XLFA 3EQOA 4YZAA 3GRHA 2O17A 1XG2A 3UW0A 1QCXA 4C2LA 4NK8A 1KCCA 2O0VA 2IQ7A 2PYHA 1OFMA 2VFMA 3NB2A 1QRCA 2BM7A 4XKWA
chains in the Genus database with same CATH topology
2J8IA 1TYXA 1QQ1A 2B0RA 2BM5A 2VFQA 1QA2A 3JX8A 1K8FA 5JLVC 1K4ZA 4OJPA 1CLWA 2IOUG 5JMCB 1QA1A 4OPWA 1QA3A 2VFPA 1TYWA 2BM4A 2BM6A 3N90A 3P4GA 4OJ6A 1WXRA 2XC1A 2BM7A 3LJYA 1HF2A 4KH3A 3RIQA 3LYCA 3ML3A 3SZEA 1DABA 3H09A 4OM9A 4OJLA 3AK5A 4OJ5A 3SYJA 3TH0A 1TSPA 1TYUA 2F3LA 1TYVA 3N6ZA 2VFNA 2YUHA 2V5IA 2G0YA 2VFMA 4JRAC 1QRCA 2BX6A 2VFOA 3BH6B 3BH7B 1KQ5A 2W7ZA 4OJOA 3PETA 1QRBA 4V02C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TYX A;  1QQ1 A;  2VFQ A;  1QA2 A;  1CLW A;  2IOU G;  1QA1 A;  1QA3 A;  2VFP A;  1TYW A;  1WXR A;  2XC1 A;  4KH3 A;  3RIQ A;  3ML3 A;  1DAB A;  3H09 A;  4OM9 A;  3AK5 A;  3SYJ A;  3TH0 A;  1TSP A;  1TYU A;  1TYV A;  2VFN A;  2V5I A;  2VFM A;  1QRC A;  2VFO A;  1QRB A;  3SZE A; 
#chains in the Genus database with same CATH topology
 1VBL A;  4YEI A;  4YCQ A;  2NT6 A;  4EW9 A;  1KTW A;  2X6W A;  2XT2 A;  2VFQ A;  4XLH A;  1OFE A;  4XOR A;  3ZPP A;  3VMV A;  4XR6 A;  1O8J A;  1LLW A;  2O6W A;  2ODL A;  2XTW A;  2XTX A;  3PSZ A;  4XL9 A;  2BM6 A;  1O8E A;  1O8I A;  5C1C A;  4YEJ A;  1QA1 A;  2XC1 A;  3NAW A;  3LYC A;  1QJV A;  1IDJ A;  2O0W A;  1IA5 A;  1O8M A;  3ZSC A;  4MR0 A;  2Z8G A;  2NZM A;  4Z05 A;  2NST A;  1TYU A;  2F3L A;  2NTP A;  2XTY A;  3N6Z A;  1O8D A;  4W8S A;  4U49 A;  4XMY A;  5C1E A;  3SQV A;  2G0Y A;  2XT4 A;  4OJO A;  2UVF A;  4YC5 A;  3B90 A;  1OGM X;  4MXN A;  5DNS A;  2B0R A;  1QQ1 A;  2BM5 A;  4YEL A;  4AVZ A;  1O88 A;  1EZG A;  1O8K A;  3JX8 A;  3SUC A;  3VMW A;  4XON A;  4Z03 A;  4YZQ A;  4OPW A;  5AMV A;  4W8T A;  1WXR A;  2INU A;  2INV A;  4U4B A;  1HF2 A;  3RIQ A;  1EE6 A;  3ML3 A;  4PMH A;  2NSP A;  2NT9 A;  1OFL A;  4Z06 A;  3H09 A;  1DAB A;  1O8L A;  4OM9 A;  1X0C A;  1RMG A;  3FY3 A;  3AK5 A;  4YFO A;  4OJ5 A;  3TH0 A;  1OOC A;  3GQ7 A;  2VFN A;  2NTB A;  2O1D A;  2O04 A;  4URR A;  4XLE A;  3VSU A;  1NHC A;  4JRA C;  1LLZ A;  2BX6 A;  2VFO A;  3PET A;  1QRB A;  3GQ8 A;  4V02 C;  1EA0 A;  4W8R A;  1LM1 A;  1TYX A;  4HWV A;  2X3H A;  1IDK A;  2X6Y A;  1O8F A;  1PE9 A;  3EQN A;  4XLC A;  4XLA A;  3VSV A;  2X6X A;  2PEC A;  1QA2 A;  2VJI A;  1WMR A;  2BSP A;  2VBM A;  4OZZ A;  4OJP A;  1CLW A;  1QA3 A;  1JRG A;  1O8G A;  2QX3 A;  3P4G A;  4OJ6 A;  4XN0 A;  3LJY A;  4XOP A;  3GQA A;  4NK6 A;  2QXZ A;  1OGO X;  1AIR A;  1RU4 A;  3B4N A;  3SY2 A;  2J8K A;  2EWE A;  4OJL A;  2NTQ A;  3PSS A;  4YZX A;  1DBG A;  3T9G A;  3SYJ A;  4XNF A;  3WWG A;  4YDT A;  1TSP A;  1KCD A;  1O8H A;  1TYV A;  2YUH A;  2QYU A;  2V5I A;  4XOT A;  1DBO A;  3BH6 B;  3BH7 B;  1KQ5 A;  2PYG A;  2W7Z A;  3LMW A;  3SZE A;  1GQ8 A;  2J8I A;  4I84 A;  3DU1 X;  1HG8 A;  1PLU A;  3KRG A;  4OZY A;  1K8F A;  1CZF A;  4XQF A;  4YZ0 A;  5JLV C;  1K4Z A;  1BN8 A;  1K5C A;  1L1I A;  3JUR A;  2IOU G;  4W8Q A;  5JMC B;  4XN3 A;  3VST A;  1H80 A;  3B8Y A;  2VFP A;  1RWR A;  1TYW A;  2BM4 A;  1BHE A;  1PXZ A;  2UVE A;  2VJJ A;  2X85 A;  3N90 A;  2QY1 A;  1JTA A;  1IB4 A;  2VBK A;  2QZA A;  2VBE A;  3GQ9 A;  4KH3 A;  4XM3 A;  4XKV A;  1OFD A;  4XLF A;  3EQO A;  4YZA A;  3GRH A;  2O17 A;  1XG2 A;  3UW0 A;  1QCX A;  4C2L A;  4NK8 A;  1KCC A;  2O0V A;  2IQ7 A;  2PYH A;  1OFM A;  2VFM A;  3NB2 A;  1QRC A;  2BM7 A;  4XKW A; 
#chains in the Genus database with same CATH homology
 2J8I A;  1TYX A;  1QQ1 A;  2B0R A;  2BM5 A;  2VFQ A;  1QA2 A;  3JX8 A;  1K8F A;  5JLV C;  1K4Z A;  4OJP A;  1CLW A;  2IOU G;  5JMC B;  1QA1 A;  4OPW A;  1QA3 A;  2VFP A;  1TYW A;  2BM4 A;  2BM6 A;  3N90 A;  3P4G A;  4OJ6 A;  1WXR A;  2XC1 A;  2BM7 A;  3LJY A;  1HF2 A;  4KH3 A;  3RIQ A;  3LYC A;  3ML3 A;  3SZE A;  1DAB A;  3H09 A;  4OM9 A;  4OJL A;  3AK5 A;  4OJ5 A;  3SYJ A;  3TH0 A;  1TSP A;  1TYU A;  2F3L A;  1TYV A;  3N6Z A;  2VFN A;  2YUH A;  2V5I A;  2G0Y A;  2VFM A;  4JRA C;  1QRC A;  2BX6 A;  2VFO A;  3BH6 B;  3BH7 B;  1KQ5 A;  2W7Z A;  4OJO A;  3PET A;  1QRB A;  4V02 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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