3EQNA

Crystal structure of beta-1,3-glucanase from phanerochaete chrysosporium (lam55a)
Total Genus 299
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
299
sequence length
752
structure length
752
Chain Sequence
LGSTCSSPLTHGSAAPGDPFWLQNIQHQGIAAFNGNPGGYPVFRNVKNYGAKGDGNTDDTAAIQAAINAGGRCGQGCDSTTTQPALVYFPPGTYKVSSPLVVLYQTQLIGDAKNLPTLLAAPNFSGIALIDADPYLAGGAQYYVNQNNFFRSVRNFVIDLRQVSGSATGIHWQVSQATSLINIVFQMSTAAGNQHQGIFMENGSGGFLGDLVFNGGNIGATFGNQQFTVRNLTFNNANTAINAIWNWGWTFQRITINNCQVGFDLTQGGTSNTGAQGVGAEAIIDAVVTNTQTFVRWSGASSGHLQGSLVLNNIQLTNVPVAVGVKGGPTVLAGGTTTINSWAQGNVYHGTNGNPTFTQGNIANINRPGVLLDSTGRIVSKSHPQYTGYAPSDFVSVRSQGAKGDGHTDDTQAIKNVFAKYAGCKIIFFDAGTYIVTDTIQIPAGTQIVGEVWSVIMGTGSKFTDYNNPQPVIQVGAPGSSGVVEITDMIFTTRGPAAGAIIVEWNVHDPSGQQAAAGAWDTHLIIGGTAQSGLQVGQCPTSGAGGNNCFADFLGLHLTSGSSAYLEGMWVWLADHDLDSGGSQQISLWSNGGIMSESQGPVWLIGTASEHHINYQYFLKNAANHYIGLAQTETPYFQPNPNPPAPFITNSNFDPSQLGQGDAWAMTVQNSHGILVFGAGFYSFFSAYNTGCQSPQNCQNQIVNVDSSSDIAFYSLTTVDTTWQFSVNAQGVINRSNNPNGFADTITAWTRN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Glucan 1,3-beta-glucosidase
publication title Crystal structure of glycoside hydrolase family 55 beta -1,3-glucanase from the basidiomycete Phanerochaete chrysosporium
pubmed doi rcsb
source organism Phanerochaete chrysosporium
total genus 299
structure length 752
sequence length 752
chains with identical sequence B
ec nomenclature ec 3.2.1.58: Glucan 1,3-beta-glucosidase.
pdb deposition date 2008-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12708 Pectate_lyase_3 Pectate lyase superfamily protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3eqnA02
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3eqnA01
4PMHA 4YZ0A 1O8DA 1HG8A 1O8MA 2X6XA 3GQ9A 5C1CA 2Z8GA 1IB4A 2QX3A 3T9GA 2ODLA 4U49A 4XN0A 2X85A 1PXZA 4AVZA 1O8EA 3ZSCA 1BHEA 1DBOA 1QJVA 3SUCA 1O8JA 1O8IA 2O0VA 4MXNA 2UVFA 1IDKA 1O8FA 4XMYA 4NK8A 1O8KA 1KCDA 3GRHA 4XLEA 2X6WA 3LMWA 2NZMA 1K5CA 4W8TA 2X3HA 2INVA 1PE9A 1JRGA 4XNFA 4URRA 2IQ7A 4XLAA 4W8SA 1CZFA 4XLCA 3EQNA 2VBKA 4OJPA 2NTQA 3VMWA 3FY3A 4XONA 2INUA 1GQ8A 1O8HA 1KCCA 3UW0A 2O0WA 2BSPA 1NHCA 3ZPPA 4U4BA 3B4NA 2QY1A 2O04A 1OFLA 4HWVA 3VMVA 4XKVA 4Z03A 2PYHA 4XKWA 4EW9A 4OJ6A 1IA5A 1AIRA 3GQ8A 4OZYA 2NSTA 1O8LA 1PLUA 1DBGA 4YELA 1RU4A 1OGMX 4NK6A 4YZQA 4XN3A 4C2LA 4YZAA 1KTWA 2NT9A 4XQFA 5C1EA 4XM3A 1O88A 2VBEA 2VBMA 2VJJA 4Z05A 3KRGA 4I84A 2X6YA 4W8RA 3GQAA 2NT6A 3WWGA 2O1DA 5AMVA 1H80A 1X0CA 4XOPA 4YZXA 1RWRA 2NSPA 3EQOA 4Z06A 2NTPA 2UVEA 4OJ5A 4W8QA 2PYGA 4OJLA 1QCXA 1OFMA 1O8GA 3VSTA 1RMGA 4XORA 4OJOA 4XLHA 1XG2A 2PECA 1JTAA 1VBLA 4OZZA 2EWEA 3JURA 4YEJA 1IDJA 4XR6A 4MR0A 4XOTA 2NTBA 4XL9A 1BN8A 3B8YA 1OOCA 3VSVA 2QXZA 1OGOX 1WMRA 3VSUA 1EE6A 3B90A 2VJIA 4XLFA 2O17A 3GQ7A
chains in the Genus database with same CATH superfamily
4PMHA 4YDTA 4YZ0A 1O8DA 1HG8A 1TYWA 5DNSA 3JX8A 2QYUA 3PETA 4OPWA 3TH0A 1O8MA 2X6XA 4KH3A 3GQ9A 5C1CA 2Z8GA 1IB4A 2QX3A 3PSSA 2ODLA 4U49A 4XN0A 3T9GA 2X85A 1PXZA 2XT4A 4AVZA 1QA1A 1O8EA 3ZSCA 1BHEA 1DBOA 1K8FA 1DABA 1QJVA 1EZGA 5JLVC 1HF2A 3SUCA 1O8JA 1O8IA 2O0VA 4MXNA 2O6WA 1IDKA 1O8FA 2UVFA 4XMYA 4NK8A 1O8KA 1KCDA 3GRHA 3LYCA 4XLEA 4YEIA 2F3LA 4YCQA 2BM4A 1K4ZA 2X6WA 3LMWA 2NZMA 1K5CA 4W8TA 1OFDA 2INVA 2X3HA 1PE9A 2W7ZA 1JRGA 2BM6A 3NB2A 4XNFA 1QA3A 2VFNA 4URRA 2IQ7A 4XLAA 1QRBA 4W8SA 1CZFA 1QQ1A 4XLCA 3EQNA 2VBKA 3LJYA 2NTQA 4OJPA 3VMWA 2BM7A 3FY3A 3SZEA 2QZAA 3RIQA 2VFMA 1TYVA 4XONA 2INUA 2J8KA 1GQ8A 2VFQA 1O8HA 1KCCA 3UW0A 2O0WA 3NAWA 2BSPA 3ML3A 3ZPPA 4U4BA 1NHCA 4JRAC 5JMCB 3B4NA 1TSPA 1TYXA 2QY1A 2O04A 1OFLA 1TYUA 4HWVA 3VMVA 4XKVA 3BH6B 4Z03A 2PYHA 2XTWA 4XKWA 4EW9A 4OJ6A 4YC5A 1IA5A 1AIRA 3GQ8A 2BX6A 4OZYA 2NSTA 1O8LA 1PLUA 2XT2A 1DBGA 4YELA 3PSZA 4OM9A 1RU4A 1OGMX 2V5IA 4NK6A 4YZQA 3N90A 4XN3A 4C2LA 4YFOA 4YZAA 1KTWA 2NT9A 4XQFA 5C1EA 4XM3A 1O88A 2VBEA 2VBMA 2VJJA 4Z05A 3KRGA 4I84A 2X6YA 4V02C 4W8RA 1L1IA 3GQAA 2NT6A 1KQ5A 3WWGA 2O1DA 2YUHA 5AMVA 1H80A 2G0YA 1X0CA 2BM5A 4XOPA 4YZXA 1QA2A 1RWRA 2NSPA 2XTYA 3EQOA 2NTPA 2UVEA 1LLWA 4Z06A 4OJ5A 1WXRA 2XTXA 4W8QA 1LM1A 2PYGA 4OJLA 2VFOA 3SYJA 1QCXA 1OFMA 1O8GA 3BH7B 3VSTA 1RMGA 3DU1X 4XORA 3AK5A 4OJOA 4XLHA 1XG2A 2IOUG 2PECA 1JTAA 1VBLA 2XC1A 1EA0A 4OZZA 1QRCA 2EWEA 3JURA 1IDJA 4XR6A 4YEJA 1OFEA 4MR0A 4XOTA 2NTBA 4XL9A 3P4GA 1BN8A 2B0RA 3B8YA 1LLZA 1OOCA 3VSVA 2QXZA 2VFPA 1OGOX 1WMRA 3VSUA 3H09A 3SY2A 1EE6A 3N6ZA 2J8IA 3B90A 2VJIA 1CLWA 3SQVA 4XLFA 2O17A 3GQ7A
chains in the Genus database with same CATH topology
4PMHA 4YZ0A 1O8DA 1HG8A 1O8MA 2X6XA 3GQ9A 5C1CA 2Z8GA 1IB4A 2QX3A 3T9GA 2ODLA 4U49A 4XN0A 2X85A 1PXZA 4AVZA 1O8EA 3ZSCA 1BHEA 1DBOA 1QJVA 3SUCA 1O8JA 1O8IA 2O0VA 4MXNA 2UVFA 1IDKA 1O8FA 4XMYA 4NK8A 1O8KA 1KCDA 3GRHA 4XLEA 2X6WA 3LMWA 2NZMA 1K5CA 4W8TA 2X3HA 2INVA 1PE9A 1JRGA 4XNFA 4URRA 2IQ7A 4XLAA 4W8SA 1CZFA 4XLCA 3EQNA 2VBKA 4OJPA 2NTQA 3VMWA 3FY3A 4XONA 2INUA 1GQ8A 1O8HA 1KCCA 3UW0A 2O0WA 2BSPA 1NHCA 3ZPPA 4U4BA 3B4NA 2QY1A 2O04A 1OFLA 4HWVA 3VMVA 4XKVA 4Z03A 2PYHA 4XKWA 4EW9A 4OJ6A 1IA5A 1AIRA 3GQ8A 4OZYA 2NSTA 1O8LA 1PLUA 1DBGA 4YELA 1RU4A 1OGMX 4NK6A 4YZQA 4XN3A 4C2LA 4YZAA 1KTWA 2NT9A 4XQFA 5C1EA 4XM3A 1O88A 2VBEA 2VBMA 2VJJA 4Z05A 3KRGA 4I84A 2X6YA 4W8RA 3GQAA 2NT6A 3WWGA 2O1DA 5AMVA 1H80A 1X0CA 4XOPA 4YZXA 1RWRA 2NSPA 3EQOA 4Z06A 2NTPA 2UVEA 4OJ5A 4W8QA 2PYGA 4OJLA 1QCXA 1OFMA 1O8GA 3VSTA 1RMGA 4XORA 4OJOA 4XLHA 1XG2A 2PECA 1JTAA 1VBLA 4OZZA 2EWEA 3JURA 4YEJA 1IDJA 4XR6A 4MR0A 4XOTA 2NTBA 4XL9A 1BN8A 3B8YA 1OOCA 3VSVA 2QXZA 1OGOX 1WMRA 3VSUA 1EE6A 3B90A 2VJIA 4XLFA 2O17A 3GQ7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PMH A;  4YZ0 A;  1O8D A;  1HG8 A;  1O8M A;  2X6X A;  3GQ9 A;  5C1C A;  2Z8G A;  1IB4 A;  2QX3 A;  3T9G A;  2ODL A;  4U49 A;  4XN0 A;  2X85 A;  1PXZ A;  4AVZ A;  1O8E A;  3ZSC A;  1BHE A;  1DBO A;  1QJV A;  3SUC A;  1O8J A;  1O8I A;  2O0V A;  4MXN A;  2UVF A;  1IDK A;  1O8F A;  4XMY A;  4NK8 A;  1O8K A;  1KCD A;  3GRH A;  4XLE A;  2X6W A;  3LMW A;  2NZM A;  1K5C A;  4W8T A;  2X3H A;  2INV A;  1PE9 A;  1JRG A;  4XNF A;  4URR A;  2IQ7 A;  4XLA A;  4W8S A;  1CZF A;  4XLC A;  3EQN A;  2VBK A;  4OJP A;  2NTQ A;  3VMW A;  3FY3 A;  4XON A;  2INU A;  1GQ8 A;  1O8H A;  1KCC A;  3UW0 A;  2O0W A;  2BSP A;  1NHC A;  3ZPP A;  4U4B A;  3B4N A;  2QY1 A;  2O04 A;  1OFL A;  4HWV A;  3VMV A;  4XKV A;  4Z03 A;  2PYH A;  4XKW A;  4EW9 A;  4OJ6 A;  1IA5 A;  1AIR A;  3GQ8 A;  4OZY A;  2NST A;  1O8L A;  1PLU A;  1DBG A;  4YEL A;  1RU4 A;  1OGM X;  4NK6 A;  4YZQ A;  4XN3 A;  4C2L A;  4YZA A;  1KTW A;  2NT9 A;  4XQF A;  5C1E A;  4XM3 A;  1O88 A;  2VBE A;  2VBM A;  2VJJ A;  4Z05 A;  3KRG A;  4I84 A;  2X6Y A;  4W8R A;  3GQA A;  2NT6 A;  3WWG A;  2O1D A;  5AMV A;  1H80 A;  1X0C A;  4XOP A;  4YZX A;  1RWR A;  2NSP A;  3EQO A;  4Z06 A;  2NTP A;  2UVE A;  4OJ5 A;  4W8Q A;  2PYG A;  4OJL A;  1QCX A;  1OFM A;  1O8G A;  3VST A;  1RMG A;  4XOR A;  4OJO A;  4XLH A;  1XG2 A;  2PEC A;  1JTA A;  1VBL A;  4OZZ A;  2EWE A;  3JUR A;  4YEJ A;  1IDJ A;  4XR6 A;  4MR0 A;  4XOT A;  2NTB A;  4XL9 A;  1BN8 A;  3B8Y A;  1OOC A;  3VSV A;  2QXZ A;  1OGO X;  1WMR A;  3VSU A;  1EE6 A;  3B90 A;  2VJI A;  4XLF A;  2O17 A;  3GQ7 A; 
#chains in the Genus database with same CATH topology
 4PMH A;  4YDT A;  4YZ0 A;  1O8D A;  1HG8 A;  1TYW A;  5DNS A;  3JX8 A;  2QYU A;  3PET A;  4OPW A;  3TH0 A;  1O8M A;  2X6X A;  4KH3 A;  3GQ9 A;  5C1C A;  2Z8G A;  1IB4 A;  2QX3 A;  3PSS A;  2ODL A;  4U49 A;  4XN0 A;  3T9G A;  2X85 A;  1PXZ A;  2XT4 A;  4AVZ A;  1QA1 A;  1O8E A;  3ZSC A;  1BHE A;  1DBO A;  1K8F A;  1DAB A;  1QJV A;  1EZG A;  5JLV C;  1HF2 A;  3SUC A;  1O8J A;  1O8I A;  2O0V A;  4MXN A;  2O6W A;  1IDK A;  1O8F A;  2UVF A;  4XMY A;  4NK8 A;  1O8K A;  1KCD A;  3GRH A;  3LYC A;  4XLE A;  4YEI A;  2F3L A;  4YCQ A;  2BM4 A;  1K4Z A;  2X6W A;  3LMW A;  2NZM A;  1K5C A;  4W8T A;  1OFD A;  2INV A;  2X3H A;  1PE9 A;  2W7Z A;  1JRG A;  2BM6 A;  3NB2 A;  4XNF A;  1QA3 A;  2VFN A;  4URR A;  2IQ7 A;  4XLA A;  1QRB A;  4W8S A;  1CZF A;  1QQ1 A;  4XLC A;  3EQN A;  2VBK A;  3LJY A;  2NTQ A;  4OJP A;  3VMW A;  2BM7 A;  3FY3 A;  3SZE A;  2QZA A;  3RIQ A;  2VFM A;  1TYV A;  4XON A;  2INU A;  2J8K A;  1GQ8 A;  2VFQ A;  1O8H A;  1KCC A;  3UW0 A;  2O0W A;  3NAW A;  2BSP A;  3ML3 A;  3ZPP A;  4U4B A;  1NHC A;  4JRA C;  5JMC B;  3B4N A;  1TSP A;  1TYX A;  2QY1 A;  2O04 A;  1OFL A;  1TYU A;  4HWV A;  3VMV A;  4XKV A;  3BH6 B;  4Z03 A;  2PYH A;  2XTW A;  4XKW A;  4EW9 A;  4OJ6 A;  4YC5 A;  1IA5 A;  1AIR A;  3GQ8 A;  2BX6 A;  4OZY A;  2NST A;  1O8L A;  1PLU A;  2XT2 A;  1DBG A;  4YEL A;  3PSZ A;  4OM9 A;  1RU4 A;  1OGM X;  2V5I A;  4NK6 A;  4YZQ A;  3N90 A;  4XN3 A;  4C2L A;  4YFO A;  4YZA A;  1KTW A;  2NT9 A;  4XQF A;  5C1E A;  4XM3 A;  1O88 A;  2VBE A;  2VBM A;  2VJJ A;  4Z05 A;  3KRG A;  4I84 A;  2X6Y A;  4V02 C;  4W8R A;  1L1I A;  3GQA A;  2NT6 A;  1KQ5 A;  3WWG A;  2O1D A;  2YUH A;  5AMV A;  1H80 A;  2G0Y A;  1X0C A;  2BM5 A;  4XOP A;  4YZX A;  1QA2 A;  1RWR A;  2NSP A;  2XTY A;  3EQO A;  2NTP A;  2UVE A;  1LLW A;  4Z06 A;  4OJ5 A;  1WXR A;  2XTX A;  4W8Q A;  1LM1 A;  2PYG A;  4OJL A;  2VFO A;  3SYJ A;  1QCX A;  1OFM A;  1O8G A;  3BH7 B;  3VST A;  1RMG A;  3DU1 X;  4XOR A;  3AK5 A;  4OJO A;  4XLH A;  1XG2 A;  2IOU G;  2PEC A;  1JTA A;  1VBL A;  2XC1 A;  1EA0 A;  4OZZ A;  1QRC A;  2EWE A;  3JUR A;  1IDJ A;  4XR6 A;  4YEJ A;  1OFE A;  4MR0 A;  4XOT A;  2NTB A;  4XL9 A;  3P4G A;  1BN8 A;  2B0R A;  3B8Y A;  1LLZ A;  1OOC A;  3VSV A;  2QXZ A;  2VFP A;  1OGO X;  1WMR A;  3VSU A;  3H09 A;  3SY2 A;  1EE6 A;  3N6Z A;  2J8I A;  3B90 A;  2VJI A;  1CLW A;  3SQV A;  4XLF A;  2O17 A;  3GQ7 A; 
#chains in the Genus database with same CATH homology
 4PMH A;  4YZ0 A;  1O8D A;  1HG8 A;  1O8M A;  2X6X A;  3GQ9 A;  5C1C A;  2Z8G A;  1IB4 A;  2QX3 A;  3T9G A;  2ODL A;  4U49 A;  4XN0 A;  2X85 A;  1PXZ A;  4AVZ A;  1O8E A;  3ZSC A;  1BHE A;  1DBO A;  1QJV A;  3SUC A;  1O8J A;  1O8I A;  2O0V A;  4MXN A;  2UVF A;  1IDK A;  1O8F A;  4XMY A;  4NK8 A;  1O8K A;  1KCD A;  3GRH A;  4XLE A;  2X6W A;  3LMW A;  2NZM A;  1K5C A;  4W8T A;  2X3H A;  2INV A;  1PE9 A;  1JRG A;  4XNF A;  4URR A;  2IQ7 A;  4XLA A;  4W8S A;  1CZF A;  4XLC A;  3EQN A;  2VBK A;  4OJP A;  2NTQ A;  3VMW A;  3FY3 A;  4XON A;  2INU A;  1GQ8 A;  1O8H A;  1KCC A;  3UW0 A;  2O0W A;  2BSP A;  1NHC A;  3ZPP A;  4U4B A;  3B4N A;  2QY1 A;  2O04 A;  1OFL A;  4HWV A;  3VMV A;  4XKV A;  4Z03 A;  2PYH A;  4XKW A;  4EW9 A;  4OJ6 A;  1IA5 A;  1AIR A;  3GQ8 A;  4OZY A;  2NST A;  1O8L A;  1PLU A;  1DBG A;  4YEL A;  1RU4 A;  1OGM X;  4NK6 A;  4YZQ A;  4XN3 A;  4C2L A;  4YZA A;  1KTW A;  2NT9 A;  4XQF A;  5C1E A;  4XM3 A;  1O88 A;  2VBE A;  2VBM A;  2VJJ A;  4Z05 A;  3KRG A;  4I84 A;  2X6Y A;  4W8R A;  3GQA A;  2NT6 A;  3WWG A;  2O1D A;  5AMV A;  1H80 A;  1X0C A;  4XOP A;  4YZX A;  1RWR A;  2NSP A;  3EQO A;  4Z06 A;  2NTP A;  2UVE A;  4OJ5 A;  4W8Q A;  2PYG A;  4OJL A;  1QCX A;  1OFM A;  1O8G A;  3VST A;  1RMG A;  4XOR A;  4OJO A;  4XLH A;  1XG2 A;  2PEC A;  1JTA A;  1VBL A;  4OZZ A;  2EWE A;  3JUR A;  4YEJ A;  1IDJ A;  4XR6 A;  4MR0 A;  4XOT A;  2NTB A;  4XL9 A;  1BN8 A;  3B8Y A;  1OOC A;  3VSV A;  2QXZ A;  1OGO X;  1WMR A;  3VSU A;  1EE6 A;  3B90 A;  2VJI A;  4XLF A;  2O17 A;  3GQ7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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