3EQNA

Crystal structure of beta-1,3-glucanase from phanerochaete chrysosporium (lam55a)
Total Genus 299
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
299
sequence length
752
structure length
752
Chain Sequence
b'LGSTCSSPLTHGSAAPGDPFWLQNIQHQGIAAFNGNPGGYPVFRNVKNYGAKGDGNTDDTAAIQAAINAGGRCGQGCDSTTTQPALVYFPPGTYKVSSPLVVLYQTQLIGDAKNLPTLLAAPNFSGIALIDADPYLAGGAQYYVNQNNFFRSVRNFVIDLRQVSGSATGIHWQVSQATSLINIVFQMSTAAGNQHQGIFMENGSGGFLGDLVFNGGNIGATFGNQQFTVRNLTFNNANTAINAIWNWGWTFQRITINNCQVGFDLTQGGTSNTGAQGVGAEAIIDAVVTNTQTFVRWSGASSGHLQGSLVLNNIQLTNVPVAVGVKGGPTVLAGGTTTINSWAQGNVYHGTNGNPTFTQGNIANINRPGVLLDSTGRIVSKSHPQYTGYAPSDFVSVRSQGAKGDGHTDDTQAIKNVFAKYAGCKIIFFDAGTYIVTDTIQIPAGTQIVGEVWSVIMGTGSKFTDYNNPQPVIQVGAPGSSGVVEITDMIFTTRGPAAGAIIVEWNVHDPSGQQAAAGAWDTHLIIGGTAQSGLQVGQCPTSGAGGNNCFADFLGLHLTSGSSAYLEGMWVWLADHDLDSGGSQQISLWSNGGIMSESQGPVWLIGTASEHHINYQYFLKNAANHYIGLAQTETPYFQPNPNPPAPFITNSNFDPSQLGQGDAWAMTVQNSHGILVFGAGFYSFFSAYNTGCQSPQNCQNQIVNVDSSSDIAFYSLTTVDTTWQFSVNAQGVINRSNNPNGFADTITAWTRN'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Glucan 1,3-beta-glucosidase
publication title Crystal structure of glycoside hydrolase family 55 beta -1,3-glucanase from the basidiomycete Phanerochaete chrysosporium
pubmed doi rcsb
source organism Phanerochaete chrysosporium
molecule tags Hydrolase
total genus 299
structure length 752
sequence length 752
chains with identical sequence B
ec nomenclature ec 3.2.1.58: Glucan 1,3-beta-glucosidase.
pdb deposition date 2008-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12708 Pectate_lyase_3 Pectate lyase superfamily protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3eqnA02
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3eqnA01
2NSTA 3FY3A 4XMYA 2QXZA 2X3HA 4XONA 3ZPPA 1O8MA 1DBOA 1K5CA 5C1CA 4W8SA 4XOTA 1OGMX 1BHEA 1RU4A 2INUA 4YZAA 1KCCA 2UVFA 3T9GA 4OJ5A 1GQ8A 1EE6A 2INVA 1DBGA 2O0WA 1OFLA 4C2LA 1CZFA 4I84A 4XLAA 3JURA 4XORA 2EWEA 4URRA 2X6XA 3B4NA 2QY1A 1O8HA 4YEJA 2NSPA 4OZYA 4XKWA 2PYHA 1WMRA 2QX3A 4MXNA 3WWGA 4W8TA 1O8IA 1O8DA 1X0CA 3SUCA 1H80A 4U49A 4XL9A 1OOCA 2PYGA 1HG8A 4XNFA 4U4BA 2VJIA 5AMVA 2NZMA 2X6YA 4XLCA 1O88A 3GQ8A 3VSVA 2O0VA 1O8LA 3VMWA 3VSTA 2ODLA 1QCXA 4XKVA 4YZXA 4MR0A 1KTWA 4XR6A 4OZZA 1O8JA 3EQOA 1OFMA 3KRGA 1VBLA 4XOPA 4NK8A 3VMVA 2Z8GA 4OJ6A 4YZQA 2VBKA 1KCDA 2VJJA 1O8EA 2NTBA 4XN3A 2O04A 1RWRA 2VBMA 1O8KA 4XLEA 1O8GA 4PMHA 4Z03A 2BSPA 2NT6A 4W8RA 4EW9A 4XQFA 5C1EA 1OGOX 3GQAA 2VBEA 1AIRA 4OJOA 3B8YA 2UVEA 2NTQA 4Z06A 3ZSCA 2IQ7A 2O17A 1IDJA 2NTPA 3UW0A 1IA5A 4W8QA 2NT9A 4OJLA 1JRGA 1PLUA 4YELA 2O1DA 3VSUA 3B90A 4HWVA 1RMGA 1PXZA 1QJVA 4Z05A 1IB4A 4XLFA 3EQNA 3LMWA 3GQ9A 1BN8A 4OJPA 3GQ7A 2X6WA 3GRHA 4XLHA 2PECA 1JTAA 1IDKA 4YZ0A 1PE9A 4XN0A 1XG2A 1O8FA 2X85A 4XM3A 4AVZA 4NK6A 1NHCA
chains in the Genus database with same CATH superfamily
2NSTA 1K4ZA 3FY3A 2QXZA 4XMYA 1TYVA 2X3HA 2XT4A 4XONA 4OPWA 2IOUG 3PSZA 1O8MA 1QRBA 1DBOA 3ZPPA 5C1CA 5JMCB 1K5CA 2XTYA 4W8SA 4XOTA 1OGMX 3H09A 1BHEA 1QA2A 1RU4A 2O6WA 2J8IA 2INUA 4YZAA 1KCCA 1DABA 2UVFA 3T9GA 4OJ5A 1CLWA 4YEIA 1GQ8A 1EE6A 2INVA 1DBGA 2O0WA 3RIQA 1OFLA 4C2LA 1CZFA 4I84A 4XLAA 2XC1A 3JURA 4XORA 2EWEA 4URRA 2X6XA 1QRCA 3P4GA 3NB2A 3B4NA 2QY1A 3LJYA 2J8KA 1QA1A 1O8HA 2VFPA 4YEJA 2NSPA 4OZYA 4XKWA 2VFMA 1LM1A 2PYHA 1TYXA 3PSSA 1WMRA 1OFDA 2QX3A 4MXNA 3WWGA 4W8TA 1O8IA 1O8DA 1X0CA 3SUCA 2VFQA 1H80A 3JX8A 4U49A 4XL9A 1OOCA 2PYGA 1HG8A 1OFEA 4XNFA 3PETA 2VJIA 4U4BA 5AMVA 2NZMA 2QYUA 2X6YA 1TSPA 4XLCA 1O88A 2YUHA 2G0YA 3GQ8A 3VSVA 2O0VA 1O8LA 3VMWA 3VSTA 2ODLA 1L1IA 1QCXA 4XKVA 4YZXA 4MR0A 2BM7A 1EA0A 1KTWA 4XR6A 4OZZA 1O8JA 3EQOA 1OFMA 3KRGA 1VBLA 4XOPA 4NK8A 3VMVA 2Z8GA 4OJ6A 4YZQA 2VBKA 3SQVA 1KCDA 2VJJA 2XTWA 3N90A 1O8EA 2NTBA 4XN3A 1HF2A 2O04A 4V02C 1RWRA 2VBMA 1O8KA 4XLEA 1O8GA 4YDTA 3ML3A 1LLWA 2V5IA 4PMHA 4Z03A 2BSPA 2NT6A 4W8RA 4EW9A 4XQFA 5C1EA 1OGOX 2VFNA 1WXRA 1EZGA 3GQAA 2VBEA 1AIRA 4OJOA 3SY2A 5JLVC 3B8YA 2UVEA 2NTQA 4OM9A 4Z06A 2BM4A 3LYCA 3ZSCA 2IQ7A 2O17A 2VFOA 3BH7B 1IDJA 2W7ZA 2NTPA 3UW0A 1IA5A 1QQ1A 4W8QA 2NT9A 4OJLA 2BM5A 1TYWA 1JRGA 1PLUA 4YC5A 4YELA 2O1DA 3NAWA 3SYJA 3VSUA 3B90A 4HWVA 1TYUA 1RMGA 1PXZA 2F3LA 3SZEA 1QJVA 4Z05A 3AK5A 1K8FA 2BX6A 1IB4A 3BH6B 4JRAC 4XLFA 3TH0A 4NK6A 1LLZA 3DU1X 3EQNA 1QA3A 3LMWA 2QZAA 1BN8A 3GQ9A 4KH3A 5DNSA 4OJPA 3GQ7A 4YFOA 2B0RA 2X6WA 2BM6A 3GRHA 2XT2A 4XLHA 2PECA 1JTAA 1KQ5A 1IDKA 4YZ0A 1PE9A 4XN0A 4YCQA 1XG2A 1O8FA 2X85A 4XM3A 3N6ZA 4AVZA 2XTXA 1NHCA
chains in the Genus database with same CATH topology
2NSTA 3FY3A 4XMYA 2QXZA 2X3HA 4XONA 3ZPPA 1O8MA 1DBOA 1K5CA 5C1CA 4W8SA 4XOTA 1OGMX 1BHEA 1RU4A 2INUA 4YZAA 1KCCA 2UVFA 3T9GA 4OJ5A 1GQ8A 1EE6A 2INVA 1DBGA 2O0WA 1OFLA 4C2LA 1CZFA 4I84A 4XLAA 3JURA 4XORA 2EWEA 4URRA 2X6XA 3B4NA 2QY1A 1O8HA 4YEJA 2NSPA 4OZYA 4XKWA 2PYHA 1WMRA 2QX3A 4MXNA 3WWGA 4W8TA 1O8IA 1O8DA 1X0CA 3SUCA 1H80A 4U49A 4XL9A 1OOCA 2PYGA 1HG8A 4XNFA 4U4BA 2VJIA 5AMVA 2NZMA 2X6YA 4XLCA 1O88A 3GQ8A 3VSVA 2O0VA 1O8LA 3VMWA 3VSTA 2ODLA 1QCXA 4XKVA 4YZXA 4MR0A 1KTWA 4XR6A 4OZZA 1O8JA 3EQOA 1OFMA 3KRGA 1VBLA 4XOPA 4NK8A 3VMVA 2Z8GA 4OJ6A 4YZQA 2VBKA 1KCDA 2VJJA 1O8EA 2NTBA 4XN3A 2O04A 1RWRA 2VBMA 1O8KA 4XLEA 1O8GA 4PMHA 4Z03A 2BSPA 2NT6A 4W8RA 4EW9A 4XQFA 5C1EA 1OGOX 3GQAA 2VBEA 1AIRA 4OJOA 3B8YA 2UVEA 2NTQA 4Z06A 3ZSCA 2IQ7A 2O17A 1IDJA 2NTPA 3UW0A 1IA5A 4W8QA 2NT9A 4OJLA 1JRGA 1PLUA 4YELA 2O1DA 3VSUA 3B90A 4HWVA 1RMGA 1PXZA 1QJVA 4Z05A 1IB4A 4XLFA 3EQNA 3LMWA 3GQ9A 1BN8A 4OJPA 3GQ7A 2X6WA 3GRHA 4XLHA 2PECA 1JTAA 1IDKA 4YZ0A 1PE9A 4XN0A 1XG2A 1O8FA 2X85A 4XM3A 4AVZA 4NK6A 1NHCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NST A;  3FY3 A;  4XMY A;  2QXZ A;  2X3H A;  4XON A;  3ZPP A;  1O8M A;  1DBO A;  1K5C A;  5C1C A;  4W8S A;  4XOT A;  1OGM X;  1BHE A;  1RU4 A;  2INU A;  4YZA A;  1KCC A;  2UVF A;  3T9G A;  4OJ5 A;  1GQ8 A;  1EE6 A;  2INV A;  1DBG A;  2O0W A;  1OFL A;  4C2L A;  1CZF A;  4I84 A;  4XLA A;  3JUR A;  4XOR A;  2EWE A;  4URR A;  2X6X A;  3B4N A;  2QY1 A;  1O8H A;  4YEJ A;  2NSP A;  4OZY A;  4XKW A;  2PYH A;  1WMR A;  2QX3 A;  4MXN A;  3WWG A;  4W8T A;  1O8I A;  1O8D A;  1X0C A;  3SUC A;  1H80 A;  4U49 A;  4XL9 A;  1OOC A;  2PYG A;  1HG8 A;  4XNF A;  4U4B A;  2VJI A;  5AMV A;  2NZM A;  2X6Y A;  4XLC A;  1O88 A;  3GQ8 A;  3VSV A;  2O0V A;  1O8L A;  3VMW A;  3VST A;  2ODL A;  1QCX A;  4XKV A;  4YZX A;  4MR0 A;  1KTW A;  4XR6 A;  4OZZ A;  1O8J A;  3EQO A;  1OFM A;  3KRG A;  1VBL A;  4XOP A;  4NK8 A;  3VMV A;  2Z8G A;  4OJ6 A;  4YZQ A;  2VBK A;  1KCD A;  2VJJ A;  1O8E A;  2NTB A;  4XN3 A;  2O04 A;  1RWR A;  2VBM A;  1O8K A;  4XLE A;  1O8G A;  4PMH A;  4Z03 A;  2BSP A;  2NT6 A;  4W8R A;  4EW9 A;  4XQF A;  5C1E A;  1OGO X;  3GQA A;  2VBE A;  1AIR A;  4OJO A;  3B8Y A;  2UVE A;  2NTQ A;  4Z06 A;  3ZSC A;  2IQ7 A;  2O17 A;  1IDJ A;  2NTP A;  3UW0 A;  1IA5 A;  4W8Q A;  2NT9 A;  4OJL A;  1JRG A;  1PLU A;  4YEL A;  2O1D A;  3VSU A;  3B90 A;  4HWV A;  1RMG A;  1PXZ A;  1QJV A;  4Z05 A;  1IB4 A;  4XLF A;  3EQN A;  3LMW A;  3GQ9 A;  1BN8 A;  4OJP A;  3GQ7 A;  2X6W A;  3GRH A;  4XLH A;  2PEC A;  1JTA A;  1IDK A;  4YZ0 A;  1PE9 A;  4XN0 A;  1XG2 A;  1O8F A;  2X85 A;  4XM3 A;  4AVZ A;  4NK6 A;  1NHC A; 
#chains in the Genus database with same CATH topology
 2NST A;  1K4Z A;  3FY3 A;  2QXZ A;  4XMY A;  1TYV A;  2X3H A;  2XT4 A;  4XON A;  4OPW A;  2IOU G;  3PSZ A;  1O8M A;  1QRB A;  1DBO A;  3ZPP A;  5C1C A;  5JMC B;  1K5C A;  2XTY A;  4W8S A;  4XOT A;  1OGM X;  3H09 A;  1BHE A;  1QA2 A;  1RU4 A;  2O6W A;  2J8I A;  2INU A;  4YZA A;  1KCC A;  1DAB A;  2UVF A;  3T9G A;  4OJ5 A;  1CLW A;  4YEI A;  1GQ8 A;  1EE6 A;  2INV A;  1DBG A;  2O0W A;  3RIQ A;  1OFL A;  4C2L A;  1CZF A;  4I84 A;  4XLA A;  2XC1 A;  3JUR A;  4XOR A;  2EWE A;  4URR A;  2X6X A;  1QRC A;  3P4G A;  3NB2 A;  3B4N A;  2QY1 A;  3LJY A;  2J8K A;  1QA1 A;  1O8H A;  2VFP A;  4YEJ A;  2NSP A;  4OZY A;  4XKW A;  2VFM A;  1LM1 A;  2PYH A;  1TYX A;  3PSS A;  1WMR A;  1OFD A;  2QX3 A;  4MXN A;  3WWG A;  4W8T A;  1O8I A;  1O8D A;  1X0C A;  3SUC A;  2VFQ A;  1H80 A;  3JX8 A;  4U49 A;  4XL9 A;  1OOC A;  2PYG A;  1HG8 A;  1OFE A;  4XNF A;  3PET A;  2VJI A;  4U4B A;  5AMV A;  2NZM A;  2QYU A;  2X6Y A;  1TSP A;  4XLC A;  1O88 A;  2YUH A;  2G0Y A;  3GQ8 A;  3VSV A;  2O0V A;  1O8L A;  3VMW A;  3VST A;  2ODL A;  1L1I A;  1QCX A;  4XKV A;  4YZX A;  4MR0 A;  2BM7 A;  1EA0 A;  1KTW A;  4XR6 A;  4OZZ A;  1O8J A;  3EQO A;  1OFM A;  3KRG A;  1VBL A;  4XOP A;  4NK8 A;  3VMV A;  2Z8G A;  4OJ6 A;  4YZQ A;  2VBK A;  3SQV A;  1KCD A;  2VJJ A;  2XTW A;  3N90 A;  1O8E A;  2NTB A;  4XN3 A;  1HF2 A;  2O04 A;  4V02 C;  1RWR A;  2VBM A;  1O8K A;  4XLE A;  1O8G A;  4YDT A;  3ML3 A;  1LLW A;  2V5I A;  4PMH A;  4Z03 A;  2BSP A;  2NT6 A;  4W8R A;  4EW9 A;  4XQF A;  5C1E A;  1OGO X;  2VFN A;  1WXR A;  1EZG A;  3GQA A;  2VBE A;  1AIR A;  4OJO A;  3SY2 A;  5JLV C;  3B8Y A;  2UVE A;  2NTQ A;  4OM9 A;  4Z06 A;  2BM4 A;  3LYC A;  3ZSC A;  2IQ7 A;  2O17 A;  2VFO A;  3BH7 B;  1IDJ A;  2W7Z A;  2NTP A;  3UW0 A;  1IA5 A;  1QQ1 A;  4W8Q A;  2NT9 A;  4OJL A;  2BM5 A;  1TYW A;  1JRG A;  1PLU A;  4YC5 A;  4YEL A;  2O1D A;  3NAW A;  3SYJ A;  3VSU A;  3B90 A;  4HWV A;  1TYU A;  1RMG A;  1PXZ A;  2F3L A;  3SZE A;  1QJV A;  4Z05 A;  3AK5 A;  1K8F A;  2BX6 A;  1IB4 A;  3BH6 B;  4JRA C;  4XLF A;  3TH0 A;  4NK6 A;  1LLZ A;  3DU1 X;  3EQN A;  1QA3 A;  3LMW A;  2QZA A;  1BN8 A;  3GQ9 A;  4KH3 A;  5DNS A;  4OJP A;  3GQ7 A;  4YFO A;  2B0R A;  2X6W A;  2BM6 A;  3GRH A;  2XT2 A;  4XLH A;  2PEC A;  1JTA A;  1KQ5 A;  1IDK A;  4YZ0 A;  1PE9 A;  4XN0 A;  4YCQ A;  1XG2 A;  1O8F A;  2X85 A;  4XM3 A;  3N6Z A;  4AVZ A;  2XTX A;  1NHC A; 
#chains in the Genus database with same CATH homology
 2NST A;  3FY3 A;  4XMY A;  2QXZ A;  2X3H A;  4XON A;  3ZPP A;  1O8M A;  1DBO A;  1K5C A;  5C1C A;  4W8S A;  4XOT A;  1OGM X;  1BHE A;  1RU4 A;  2INU A;  4YZA A;  1KCC A;  2UVF A;  3T9G A;  4OJ5 A;  1GQ8 A;  1EE6 A;  2INV A;  1DBG A;  2O0W A;  1OFL A;  4C2L A;  1CZF A;  4I84 A;  4XLA A;  3JUR A;  4XOR A;  2EWE A;  4URR A;  2X6X A;  3B4N A;  2QY1 A;  1O8H A;  4YEJ A;  2NSP A;  4OZY A;  4XKW A;  2PYH A;  1WMR A;  2QX3 A;  4MXN A;  3WWG A;  4W8T A;  1O8I A;  1O8D A;  1X0C A;  3SUC A;  1H80 A;  4U49 A;  4XL9 A;  1OOC A;  2PYG A;  1HG8 A;  4XNF A;  4U4B A;  2VJI A;  5AMV A;  2NZM A;  2X6Y A;  4XLC A;  1O88 A;  3GQ8 A;  3VSV A;  2O0V A;  1O8L A;  3VMW A;  3VST A;  2ODL A;  1QCX A;  4XKV A;  4YZX A;  4MR0 A;  1KTW A;  4XR6 A;  4OZZ A;  1O8J A;  3EQO A;  1OFM A;  3KRG A;  1VBL A;  4XOP A;  4NK8 A;  3VMV A;  2Z8G A;  4OJ6 A;  4YZQ A;  2VBK A;  1KCD A;  2VJJ A;  1O8E A;  2NTB A;  4XN3 A;  2O04 A;  1RWR A;  2VBM A;  1O8K A;  4XLE A;  1O8G A;  4PMH A;  4Z03 A;  2BSP A;  2NT6 A;  4W8R A;  4EW9 A;  4XQF A;  5C1E A;  1OGO X;  3GQA A;  2VBE A;  1AIR A;  4OJO A;  3B8Y A;  2UVE A;  2NTQ A;  4Z06 A;  3ZSC A;  2IQ7 A;  2O17 A;  1IDJ A;  2NTP A;  3UW0 A;  1IA5 A;  4W8Q A;  2NT9 A;  4OJL A;  1JRG A;  1PLU A;  4YEL A;  2O1D A;  3VSU A;  3B90 A;  4HWV A;  1RMG A;  1PXZ A;  1QJV A;  4Z05 A;  1IB4 A;  4XLF A;  3EQN A;  3LMW A;  3GQ9 A;  1BN8 A;  4OJP A;  3GQ7 A;  2X6W A;  3GRH A;  4XLH A;  2PEC A;  1JTA A;  1IDK A;  4YZ0 A;  1PE9 A;  4XN0 A;  1XG2 A;  1O8F A;  2X85 A;  4XM3 A;  4AVZ A;  4NK6 A;  1NHC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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