3EQNA

Crystal structure of beta-1,3-glucanase from phanerochaete chrysosporium (lam55a)
Total Genus 299
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
299
sequence length
752
structure length
752
Chain Sequence
LGSTCSSPLTHGSAAPGDPFWLQNIQHQGIAAFNGNPGGYPVFRNVKNYGAKGDGNTDDTAAIQAAINAGGRCGQGCDSTTTQPALVYFPPGTYKVSSPLVVLYQTQLIGDAKNLPTLLAAPNFSGIALIDADPYLAGGAQYYVNQNNFFRSVRNFVIDLRQVSGSATGIHWQVSQATSLINIVFQMSTAAGNQHQGIFMENGSGGFLGDLVFNGGNIGATFGNQQFTVRNLTFNNANTAINAIWNWGWTFQRITINNCQVGFDLTQGGTSNTGAQGVGAEAIIDAVVTNTQTFVRWSGASSGHLQGSLVLNNIQLTNVPVAVGVKGGPTVLAGGTTTINSWAQGNVYHGTNGNPTFTQGNIANINRPGVLLDSTGRIVSKSHPQYTGYAPSDFVSVRSQGAKGDGHTDDTQAIKNVFAKYAGCKIIFFDAGTYIVTDTIQIPAGTQIVGEVWSVIMGTGSKFTDYNNPQPVIQVGAPGSSGVVEITDMIFTTRGPAAGAIIVEWNVHDPSGQQAAAGAWDTHLIIGGTAQSGLQVGQCPTSGAGGNNCFADFLGLHLTSGSSAYLEGMWVWLADHDLDSGGSQQISLWSNGGIMSESQGPVWLIGTASEHHINYQYFLKNAANHYIGLAQTETPYFQPNPNPPAPFITNSNFDPSQLGQGDAWAMTVQNSHGILVFGAGFYSFFSAYNTGCQSPQNCQNQIVNVDSSSDIAFYSLTTVDTTWQFSVNAQGVINRSNNPNGFADTITAWTRN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Glucan 1,3-beta-glucosidase
publication title Crystal structure of glycoside hydrolase family 55 beta -1,3-glucanase from the basidiomycete Phanerochaete chrysosporium
pubmed doi rcsb
source organism Phanerochaete chrysosporium
molecule tags Hydrolase
total genus 299
structure length 752
sequence length 752
chains with identical sequence B
ec nomenclature ec 3.2.1.58: Glucan 1,3-beta-glucosidase.
pdb deposition date 2008-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12708 Pectate_lyase_3 Pectate lyase superfamily protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3eqnA02
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3eqnA01
3B8YA 1O8IA 1RMGA 2O04A 3VSVA 3VSTA 4MR0A 2VBEA 5C1EA 1KCDA 1PE9A 4NK6A 1DBGA 1O8JA 4XR6A 1CZFA 1RWRA 2O1DA 3EQOA 1JRGA 1GQ8A 1OFMA 1OFLA 3GQAA 4NK8A 3VMVA 1BHEA 1OGMX 4XN0A 1AIRA 1O8HA 2QX3A 1IDKA 3GRHA 4OZZA 1QJVA 4Z03A 4YZAA 2QXZA 4W8SA 2UVEA 4XKVA 4W8RA 1VBLA 2NT9A 4OJPA 1IA5A 2NZMA 1KTWA 2IQ7A 4HWVA 4OZYA 4XLHA 4YEJA 4PMHA 4Z06A 2PYHA 3FY3A 1QCXA 2VJJA 3GQ8A 1O8FA 1O8KA 2O0WA 1OOCA 2X85A 2O0VA 4XORA 2UVFA 2O17A 2VBKA 2VJIA 4OJ5A 1O88A 5AMVA 2BSPA 1XG2A 4XLFA 4W8TA 4OJLA 2NSTA 2X6WA 5C1CA 1OGOX 3UW0A 2NT6A 4XL9A 1IB4A 3B90A 2X3HA 4U4BA 2ODLA 1O8DA 4XM3A 4XOTA 1X0CA 4XMYA 3LMWA 4W8QA 4EW9A 3VMWA 3EQNA 1PXZA 2X6YA 3ZPPA 4YZ0A 2NSPA 4YZQA 3ZSCA 1IDJA 4XQFA 1RU4A 3GQ7A 3VSUA 3B4NA 3JURA 4I84A 4XLEA 2EWEA 2INUA 3KRGA 1BN8A 1H80A 1O8MA 2VBMA 2PECA 2INVA 4OJ6A 2Z8GA 2NTPA 1O8LA 1JTAA 1EE6A 4Z05A 4AVZA 4XLCA 4C2LA 1O8GA 4XKWA 1O8EA 2X6XA 4XNFA 2QY1A 3GQ9A 4URRA 4XOPA 1K5CA 4U49A 1NHCA 1WMRA 3SUCA 4OJOA 4YZXA 2NTBA 4XLAA 3T9GA 2PYGA 1PLUA 1DBOA 1HG8A 4XONA 4XN3A 4MXNA 3WWGA 2NTQA 1KCCA 4YELA
chains in the Genus database with same CATH superfamily
2VFMA 3B8YA 1EZGA 1O8IA 1QRBA 1QRCA 1RMGA 2VFQA 1K8FA 2O04A 1WXRA 3VSVA 2BM5A 2V5IA 3VSTA 4MR0A 2VBEA 3AK5A 5C1EA 2W7ZA 3DU1X 1KCDA 1PE9A 2G0YA 4NK6A 1DBGA 2YUHA 1O8JA 4XR6A 1CZFA 3SZEA 1RWRA 3NAWA 1TYWA 2O1DA 3EQOA 2J8IA 1JRGA 4KH3A 1K4ZA 1GQ8A 1OFMA 1OFLA 1TSPA 3GQAA 2BX6A 4NK8A 3VMVA 1BHEA 1OGMX 4XN0A 1AIRA 1O8HA 1IDKA 2QX3A 3GRHA 1OFEA 1QJVA 1CLWA 2VFNA 4OZZA 5DNSA 1LLWA 4YZAA 4Z03A 3SY2A 1TYVA 2QXZA 4W8SA 1QA1A 1HF2A 1EA0A 2BM6A 2UVEA 2XC1A 3BH6B 3LJYA 3N90A 4OPWA 4W8RA 2QZAA 1VBLA 4XKVA 2NT9A 4OJPA 1IA5A 2NZMA 1KTWA 2IQ7A 4YC5A 4YCQA 4HWVA 4OM9A 4YDTA 3SQVA 3PSSA 4OZYA 4V02C 4XLHA 4YEJA 1LM1A 4PMHA 1TYUA 3PSZA 4Z06A 2PYHA 3FY3A 1QCXA 2VJJA 2J8KA 3NB2A 3GQ8A 1O8FA 1O8KA 2O0WA 1OOCA 5JLVC 2X85A 2O0VA 2B0RA 4XORA 3SYJA 2UVFA 2O17A 2VBKA 2VJIA 4OJ5A 1O88A 5AMVA 2BSPA 1XG2A 4XLFA 2BM7A 3JX8A 4W8TA 4OJLA 2NSTA 5JMCB 2X6WA 5C1CA 1OGOX 3UW0A 2NT6A 4XL9A 1QA2A 1IB4A 3B90A 2X3HA 3PETA 4U4BA 2ODLA 1O8DA 4XM3A 4XOTA 1X0CA 4XMYA 3LMWA 4W8QA 4EW9A 3VMWA 3EQNA 1PXZA 2F3LA 2X6YA 2XTXA 3ZPPA 4YZ0A 2NSPA 4YZQA 2VFPA 3ZSCA 1IDJA 4XQFA 2XT4A 1RU4A 3GQ7A 3VSUA 3B4NA 3JURA 1QA3A 4I84A 4XLEA 2EWEA 2INUA 3KRGA 1BN8A 1H80A 1O8MA 2VBMA 2VFOA 3BH7B 2XTYA 1OFDA 2INVA 2PECA 3RIQA 3H09A 4OJ6A 1LLZA 2Z8GA 2NTPA 2QYUA 1O8LA 3N6ZA 1JTAA 1EE6A 4Z05A 4AVZA 4XLCA 3LYCA 4YEIA 1L1IA 2BM4A 4C2LA 1O8GA 4XKWA 3TH0A 1O8EA 2X6XA 4XNFA 1TYXA 1KQ5A 2QY1A 2XTWA 3GQ9A 3ML3A 4URRA 4XOPA 1K5CA 4U49A 4YFOA 1NHCA 1WMRA 3SUCA 4OJOA 2IOUG 2XT2A 3P4GA 1DABA 4YZXA 2NTBA 4XLAA 3T9GA 4JRAC 2PYGA 1PLUA 1DBOA 1HG8A 4XONA 4XN3A 4MXNA 1QQ1A 2O6WA 3WWGA 2NTQA 1KCCA 4YELA
chains in the Genus database with same CATH topology
3B8YA 1O8IA 1RMGA 2O04A 3VSVA 3VSTA 4MR0A 2VBEA 5C1EA 1KCDA 1PE9A 4NK6A 1DBGA 1O8JA 4XR6A 1CZFA 1RWRA 2O1DA 3EQOA 1JRGA 1GQ8A 1OFMA 1OFLA 3GQAA 4NK8A 3VMVA 1BHEA 1OGMX 4XN0A 1AIRA 1O8HA 2QX3A 1IDKA 3GRHA 4OZZA 1QJVA 4Z03A 4YZAA 2QXZA 4W8SA 2UVEA 4XKVA 4W8RA 1VBLA 2NT9A 4OJPA 1IA5A 2NZMA 1KTWA 2IQ7A 4HWVA 4OZYA 4XLHA 4YEJA 4PMHA 4Z06A 2PYHA 3FY3A 1QCXA 2VJJA 3GQ8A 1O8FA 1O8KA 2O0WA 1OOCA 2X85A 2O0VA 4XORA 2UVFA 2O17A 2VBKA 2VJIA 4OJ5A 1O88A 5AMVA 2BSPA 1XG2A 4XLFA 4W8TA 4OJLA 2NSTA 2X6WA 5C1CA 1OGOX 3UW0A 2NT6A 4XL9A 1IB4A 3B90A 2X3HA 4U4BA 2ODLA 1O8DA 4XM3A 4XOTA 1X0CA 4XMYA 3LMWA 4W8QA 4EW9A 3VMWA 3EQNA 1PXZA 2X6YA 3ZPPA 4YZ0A 2NSPA 4YZQA 3ZSCA 1IDJA 4XQFA 1RU4A 3GQ7A 3VSUA 3B4NA 3JURA 4I84A 4XLEA 2EWEA 2INUA 3KRGA 1BN8A 1H80A 1O8MA 2VBMA 2PECA 2INVA 4OJ6A 2Z8GA 2NTPA 1O8LA 1JTAA 1EE6A 4Z05A 4AVZA 4XLCA 4C2LA 1O8GA 4XKWA 1O8EA 2X6XA 4XNFA 2QY1A 3GQ9A 4URRA 4XOPA 1K5CA 4U49A 1NHCA 1WMRA 3SUCA 4OJOA 4YZXA 2NTBA 4XLAA 3T9GA 2PYGA 1PLUA 1DBOA 1HG8A 4XONA 4XN3A 4MXNA 3WWGA 2NTQA 1KCCA 4YELA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B8Y A;  1O8I A;  1RMG A;  2O04 A;  3VSV A;  3VST A;  4MR0 A;  2VBE A;  5C1E A;  1KCD A;  1PE9 A;  4NK6 A;  1DBG A;  1O8J A;  4XR6 A;  1CZF A;  1RWR A;  2O1D A;  3EQO A;  1JRG A;  1GQ8 A;  1OFM A;  1OFL A;  3GQA A;  4NK8 A;  3VMV A;  1BHE A;  1OGM X;  4XN0 A;  1AIR A;  1O8H A;  2QX3 A;  1IDK A;  3GRH A;  4OZZ A;  1QJV A;  4Z03 A;  4YZA A;  2QXZ A;  4W8S A;  2UVE A;  4XKV A;  4W8R A;  1VBL A;  2NT9 A;  4OJP A;  1IA5 A;  2NZM A;  1KTW A;  2IQ7 A;  4HWV A;  4OZY A;  4XLH A;  4YEJ A;  4PMH A;  4Z06 A;  2PYH A;  3FY3 A;  1QCX A;  2VJJ A;  3GQ8 A;  1O8F A;  1O8K A;  2O0W A;  1OOC A;  2X85 A;  2O0V A;  4XOR A;  2UVF A;  2O17 A;  2VBK A;  2VJI A;  4OJ5 A;  1O88 A;  5AMV A;  2BSP A;  1XG2 A;  4XLF A;  4W8T A;  4OJL A;  2NST A;  2X6W A;  5C1C A;  1OGO X;  3UW0 A;  2NT6 A;  4XL9 A;  1IB4 A;  3B90 A;  2X3H A;  4U4B A;  2ODL A;  1O8D A;  4XM3 A;  4XOT A;  1X0C A;  4XMY A;  3LMW A;  4W8Q A;  4EW9 A;  3VMW A;  3EQN A;  1PXZ A;  2X6Y A;  3ZPP A;  4YZ0 A;  2NSP A;  4YZQ A;  3ZSC A;  1IDJ A;  4XQF A;  1RU4 A;  3GQ7 A;  3VSU A;  3B4N A;  3JUR A;  4I84 A;  4XLE A;  2EWE A;  2INU A;  3KRG A;  1BN8 A;  1H80 A;  1O8M A;  2VBM A;  2PEC A;  2INV A;  4OJ6 A;  2Z8G A;  2NTP A;  1O8L A;  1JTA A;  1EE6 A;  4Z05 A;  4AVZ A;  4XLC A;  4C2L A;  1O8G A;  4XKW A;  1O8E A;  2X6X A;  4XNF A;  2QY1 A;  3GQ9 A;  4URR A;  4XOP A;  1K5C A;  4U49 A;  1NHC A;  1WMR A;  3SUC A;  4OJO A;  4YZX A;  2NTB A;  4XLA A;  3T9G A;  2PYG A;  1PLU A;  1DBO A;  1HG8 A;  4XON A;  4XN3 A;  4MXN A;  3WWG A;  2NTQ A;  1KCC A;  4YEL A; 
#chains in the Genus database with same CATH topology
 2VFM A;  3B8Y A;  1EZG A;  1O8I A;  1QRB A;  1QRC A;  1RMG A;  2VFQ A;  1K8F A;  2O04 A;  1WXR A;  3VSV A;  2BM5 A;  2V5I A;  3VST A;  4MR0 A;  2VBE A;  3AK5 A;  5C1E A;  2W7Z A;  3DU1 X;  1KCD A;  1PE9 A;  2G0Y A;  4NK6 A;  1DBG A;  2YUH A;  1O8J A;  4XR6 A;  1CZF A;  3SZE A;  1RWR A;  3NAW A;  1TYW A;  2O1D A;  3EQO A;  2J8I A;  1JRG A;  4KH3 A;  1K4Z A;  1GQ8 A;  1OFM A;  1OFL A;  1TSP A;  3GQA A;  2BX6 A;  4NK8 A;  3VMV A;  1BHE A;  1OGM X;  4XN0 A;  1AIR A;  1O8H A;  1IDK A;  2QX3 A;  3GRH A;  1OFE A;  1QJV A;  1CLW A;  2VFN A;  4OZZ A;  5DNS A;  1LLW A;  4YZA A;  4Z03 A;  3SY2 A;  1TYV A;  2QXZ A;  4W8S A;  1QA1 A;  1HF2 A;  1EA0 A;  2BM6 A;  2UVE A;  2XC1 A;  3BH6 B;  3LJY A;  3N90 A;  4OPW A;  4W8R A;  2QZA A;  1VBL A;  4XKV A;  2NT9 A;  4OJP A;  1IA5 A;  2NZM A;  1KTW A;  2IQ7 A;  4YC5 A;  4YCQ A;  4HWV A;  4OM9 A;  4YDT A;  3SQV A;  3PSS A;  4OZY A;  4V02 C;  4XLH A;  4YEJ A;  1LM1 A;  4PMH A;  1TYU A;  3PSZ A;  4Z06 A;  2PYH A;  3FY3 A;  1QCX A;  2VJJ A;  2J8K A;  3NB2 A;  3GQ8 A;  1O8F A;  1O8K A;  2O0W A;  1OOC A;  5JLV C;  2X85 A;  2O0V A;  2B0R A;  4XOR A;  3SYJ A;  2UVF A;  2O17 A;  2VBK A;  2VJI A;  4OJ5 A;  1O88 A;  5AMV A;  2BSP A;  1XG2 A;  4XLF A;  2BM7 A;  3JX8 A;  4W8T A;  4OJL A;  2NST A;  5JMC B;  2X6W A;  5C1C A;  1OGO X;  3UW0 A;  2NT6 A;  4XL9 A;  1QA2 A;  1IB4 A;  3B90 A;  2X3H A;  3PET A;  4U4B A;  2ODL A;  1O8D A;  4XM3 A;  4XOT A;  1X0C A;  4XMY A;  3LMW A;  4W8Q A;  4EW9 A;  3VMW A;  3EQN A;  1PXZ A;  2F3L A;  2X6Y A;  2XTX A;  3ZPP A;  4YZ0 A;  2NSP A;  4YZQ A;  2VFP A;  3ZSC A;  1IDJ A;  4XQF A;  2XT4 A;  1RU4 A;  3GQ7 A;  3VSU A;  3B4N A;  3JUR A;  1QA3 A;  4I84 A;  4XLE A;  2EWE A;  2INU A;  3KRG A;  1BN8 A;  1H80 A;  1O8M A;  2VBM A;  2VFO A;  3BH7 B;  2XTY A;  1OFD A;  2INV A;  2PEC A;  3RIQ A;  3H09 A;  4OJ6 A;  1LLZ A;  2Z8G A;  2NTP A;  2QYU A;  1O8L A;  3N6Z A;  1JTA A;  1EE6 A;  4Z05 A;  4AVZ A;  4XLC A;  3LYC A;  4YEI A;  1L1I A;  2BM4 A;  4C2L A;  1O8G A;  4XKW A;  3TH0 A;  1O8E A;  2X6X A;  4XNF A;  1TYX A;  1KQ5 A;  2QY1 A;  2XTW A;  3GQ9 A;  3ML3 A;  4URR A;  4XOP A;  1K5C A;  4U49 A;  4YFO A;  1NHC A;  1WMR A;  3SUC A;  4OJO A;  2IOU G;  2XT2 A;  3P4G A;  1DAB A;  4YZX A;  2NTB A;  4XLA A;  3T9G A;  4JRA C;  2PYG A;  1PLU A;  1DBO A;  1HG8 A;  4XON A;  4XN3 A;  4MXN A;  1QQ1 A;  2O6W A;  3WWG A;  2NTQ A;  1KCC A;  4YEL A; 
#chains in the Genus database with same CATH homology
 3B8Y A;  1O8I A;  1RMG A;  2O04 A;  3VSV A;  3VST A;  4MR0 A;  2VBE A;  5C1E A;  1KCD A;  1PE9 A;  4NK6 A;  1DBG A;  1O8J A;  4XR6 A;  1CZF A;  1RWR A;  2O1D A;  3EQO A;  1JRG A;  1GQ8 A;  1OFM A;  1OFL A;  3GQA A;  4NK8 A;  3VMV A;  1BHE A;  1OGM X;  4XN0 A;  1AIR A;  1O8H A;  2QX3 A;  1IDK A;  3GRH A;  4OZZ A;  1QJV A;  4Z03 A;  4YZA A;  2QXZ A;  4W8S A;  2UVE A;  4XKV A;  4W8R A;  1VBL A;  2NT9 A;  4OJP A;  1IA5 A;  2NZM A;  1KTW A;  2IQ7 A;  4HWV A;  4OZY A;  4XLH A;  4YEJ A;  4PMH A;  4Z06 A;  2PYH A;  3FY3 A;  1QCX A;  2VJJ A;  3GQ8 A;  1O8F A;  1O8K A;  2O0W A;  1OOC A;  2X85 A;  2O0V A;  4XOR A;  2UVF A;  2O17 A;  2VBK A;  2VJI A;  4OJ5 A;  1O88 A;  5AMV A;  2BSP A;  1XG2 A;  4XLF A;  4W8T A;  4OJL A;  2NST A;  2X6W A;  5C1C A;  1OGO X;  3UW0 A;  2NT6 A;  4XL9 A;  1IB4 A;  3B90 A;  2X3H A;  4U4B A;  2ODL A;  1O8D A;  4XM3 A;  4XOT A;  1X0C A;  4XMY A;  3LMW A;  4W8Q A;  4EW9 A;  3VMW A;  3EQN A;  1PXZ A;  2X6Y A;  3ZPP A;  4YZ0 A;  2NSP A;  4YZQ A;  3ZSC A;  1IDJ A;  4XQF A;  1RU4 A;  3GQ7 A;  3VSU A;  3B4N A;  3JUR A;  4I84 A;  4XLE A;  2EWE A;  2INU A;  3KRG A;  1BN8 A;  1H80 A;  1O8M A;  2VBM A;  2PEC A;  2INV A;  4OJ6 A;  2Z8G A;  2NTP A;  1O8L A;  1JTA A;  1EE6 A;  4Z05 A;  4AVZ A;  4XLC A;  4C2L A;  1O8G A;  4XKW A;  1O8E A;  2X6X A;  4XNF A;  2QY1 A;  3GQ9 A;  4URR A;  4XOP A;  1K5C A;  4U49 A;  1NHC A;  1WMR A;  3SUC A;  4OJO A;  4YZX A;  2NTB A;  4XLA A;  3T9G A;  2PYG A;  1PLU A;  1DBO A;  1HG8 A;  4XON A;  4XN3 A;  4MXN A;  3WWG A;  2NTQ A;  1KCC A;  4YEL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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