2O0WA

Pectate lyase bound to hexasaccharide compound iv
Total Genus 160
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural and thermodynamic insights into the mechanism of pectate lyase
rcsb
source organism Bacillus subtilis
molecule tags Lyase
molecule keywords Pectate lyase
total genus 160
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2o0wA00
2PECA 2PYHA 1BHEA 4XONA 1O8FA 4HWVA 3EQNA 4NK8A 2IQ7A 1QJVA 1O8MA 4XNFA 3VSTA 1VBLA 4XKVA 4YELA 1HG8A 1CZFA 4YZAA 4XLHA 3GQ8A 4OZYA 1H80A 3GQAA 1OOCA 4URRA 4XLCA 4Z03A 1IA5A 2INVA 4XM3A 3KRGA 3VSUA 3VMWA 2QXZA 4I84A 1RWRA 4XKWA 1RU4A 2ODLA 1O8HA 4YZQA 3B4NA 1KCCA 2QX3A 2VBKA 2X6YA 1O8DA 4XOTA 1X0CA 3B8YA 3GRHA 2VJIA 4U4BA 3UW0A 1O8IA 4XLFA 2NT9A 4NK6A 1K5CA 1OFLA 4AVZA 1QCXA 4Z05A 4XLAA 1KCDA 1PXZA 4C2LA 5C1CA 1IDJA 3SUCA 1BN8A 4EW9A 2X6XA 4W8SA 2X85A 4XL9A 4PMHA 1JTAA 2QY1A 1PE9A 2NTPA 1O8KA 1WMRA 2EWEA 1GQ8A 2NTQA 4XN3A 1OFMA 4YZXA 2NZMA 2BSPA 4XLEA 4MR0A 4XR6A 1IB4A 1DBOA 3GQ7A 2O04A 2VJJA 2O0WA 4OJ5A 2VBEA 1O88A 3LMWA 3ZPPA 1EE6A 4XMYA 5AMVA 1KTWA 2UVFA 4OJPA 4XN0A 3B90A 2VBMA 4OJLA 2NSPA 3VMVA 2NT6A 4YEJA 1OGMX 2X3HA 2O0VA 2X6WA 4Z06A 4XQFA 4YZ0A 3JURA 2NSTA 4OZZA 1O8LA 3ZSCA 3WWGA 1IDKA 4MXNA 1O8GA 1AIRA 1JRGA 4XORA 2INUA 2Z8GA 4OJ6A 4W8TA 2O1DA 4W8RA 5C1EA 2UVEA 2PYGA 1RMGA 3FY3A 3EQOA 3GQ9A 1XG2A 4XOPA 3VSVA 2NTBA 4U49A 3T9GA 1DBGA 1PLUA 1NHCA 1O8JA 2O17A 1OGOX 4W8QA 4OJOA 1O8EA
chains in the Genus database with same CATH superfamily
1LLWA 2PECA 2PYHA 1BHEA 4XONA 5JLVC 1O8FA 3PSSA 2XT4A 4HWVA 1WXRA 3EQNA 4NK8A 1K8FA 3N90A 2IQ7A 1QJVA 4YCQA 1K4ZA 3SQVA 1O8MA 4XNFA 3VSTA 1VBLA 3PSZA 4XKVA 4YELA 2VFOA 3NAWA 1HG8A 4KH3A 1CZFA 2VFQA 2BM5A 2J8KA 3N6ZA 4YZAA 4XLHA 3GQ8A 1TYVA 2QZAA 1H80A 3GQAA 1OOCA 4OZYA 4URRA 4XLCA 4Z03A 3RIQA 1QA2A 1L1IA 5JMCB 2XT2A 1IA5A 2BX6A 2INVA 2O6WA 2V5IA 2VFNA 4XM3A 2YUHA 3TH0A 3KRGA 3VSUA 1EZGA 3VMWA 1DABA 2J8IA 2QXZA 4YC5A 4I84A 1RWRA 4XKWA 3BH7B 1RU4A 4JRAC 2B0RA 1O8HA 1TYWA 2ODLA 4YZQA 3B4NA 1KCCA 2QX3A 2VBKA 2X6YA 1O8DA 1EA0A 4XOTA 2XTYA 4OM9A 1TSPA 1OFDA 1X0CA 3B8YA 3GRHA 2VJIA 4U4BA 3UW0A 1O8IA 1TYXA 3PETA 3H09A 4XLFA 3P4GA 2NT9A 1CLWA 2VFPA 4NK6A 3JX8A 1K5CA 1OFLA 4AVZA 1QCXA 4Z05A 2BM7A 1QA1A 4XLAA 1KCDA 1PXZA 4C2LA 3DU1X 1LM1A 3BH6B 5C1CA 1TYUA 3SY2A 1IDJA 3SUCA 1BN8A 4EW9A 2X6XA 4YFOA 4W8SA 2X85A 4XL9A 4PMHA 1JTAA 1HF2A 2QY1A 1PE9A 2NTPA 1O8KA 1WMRA 2EWEA 1GQ8A 2NTQA 4XN3A 1OFMA 4YZXA 2NZMA 2BSPA 4OPWA 4MR0A 4XLEA 5DNSA 3NB2A 4XR6A 1IB4A 1DBOA 3GQ7A 2O04A 2VJJA 4YDTA 1OFEA 2O0WA 2G0YA 2QYUA 2XC1A 4OJ5A 2VBEA 4V02C 1O88A 3LMWA 3ZPPA 1KQ5A 1EE6A 1QRBA 4XMYA 1KTWA 5AMVA 1LLZA 3SYJA 1QA3A 2UVFA 3AK5A 4OJPA 4XN0A 3B90A 2XTWA 2VBMA 4OJLA 2NSPA 3VMVA 2NT6A 4YEJA 1OGMX 2X3HA 1QRCA 2O0VA 2X6WA 4Z06A 4YEIA 3LYCA 4XQFA 4YZ0A 3JURA 2NSTA 4OZZA 1O8LA 3ZSCA 3WWGA 1IDKA 3LJYA 4MXNA 1O8GA 1AIRA 1QQ1A 2VFMA 1JRGA 4XORA 2INUA 3SZEA 2BM6A 2IOUG 2Z8GA 4OJ6A 4W8TA 2F3LA 2O1DA 4W8RA 3ML3A 5C1EA 2UVEA 2PYGA 1RMGA 3FY3A 3EQOA 3GQ9A 1XG2A 4XOPA 3VSVA 2NTBA 4U49A 2XTXA 3T9GA 1DBGA 1PLUA 1NHCA 1O8JA 2O17A 2BM4A 1OGOX 4W8QA 4OJOA 1O8EA 2W7ZA
chains in the Genus database with same CATH topology
2PECA 2PYHA 1BHEA 4XONA 1O8FA 4HWVA 3EQNA 4NK8A 2IQ7A 1QJVA 1O8MA 4XNFA 3VSTA 1VBLA 4XKVA 4YELA 1HG8A 1CZFA 4YZAA 4XLHA 3GQ8A 4OZYA 1H80A 3GQAA 1OOCA 4URRA 4XLCA 4Z03A 1IA5A 2INVA 4XM3A 3KRGA 3VSUA 3VMWA 2QXZA 4I84A 1RWRA 4XKWA 1RU4A 2ODLA 1O8HA 4YZQA 3B4NA 1KCCA 2QX3A 2VBKA 2X6YA 1O8DA 4XOTA 1X0CA 3B8YA 3GRHA 2VJIA 4U4BA 3UW0A 1O8IA 4XLFA 2NT9A 4NK6A 1K5CA 1OFLA 4AVZA 1QCXA 4Z05A 4XLAA 1KCDA 1PXZA 4C2LA 5C1CA 1IDJA 3SUCA 1BN8A 4EW9A 2X6XA 4W8SA 2X85A 4XL9A 4PMHA 1JTAA 2QY1A 1PE9A 2NTPA 1O8KA 1WMRA 2EWEA 1GQ8A 2NTQA 4XN3A 1OFMA 4YZXA 2NZMA 2BSPA 4XLEA 4MR0A 4XR6A 1IB4A 1DBOA 3GQ7A 2O04A 2VJJA 2O0WA 4OJ5A 2VBEA 1O88A 3LMWA 3ZPPA 1EE6A 4XMYA 5AMVA 1KTWA 2UVFA 4OJPA 4XN0A 3B90A 2VBMA 4OJLA 2NSPA 3VMVA 2NT6A 4YEJA 1OGMX 2X3HA 2O0VA 2X6WA 4Z06A 4XQFA 4YZ0A 3JURA 2NSTA 4OZZA 1O8LA 3ZSCA 3WWGA 1IDKA 4MXNA 1O8GA 1AIRA 1JRGA 4XORA 2INUA 2Z8GA 4OJ6A 4W8TA 2O1DA 4W8RA 5C1EA 2UVEA 2PYGA 1RMGA 3FY3A 3EQOA 3GQ9A 1XG2A 4XOPA 3VSVA 2NTBA 4U49A 3T9GA 1DBGA 1PLUA 1NHCA 1O8JA 2O17A 1OGOX 4W8QA 4OJOA 1O8EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PEC A;  2PYH A;  1BHE A;  4XON A;  1O8F A;  4HWV A;  3EQN A;  4NK8 A;  2IQ7 A;  1QJV A;  1O8M A;  4XNF A;  3VST A;  1VBL A;  4XKV A;  4YEL A;  1HG8 A;  1CZF A;  4YZA A;  4XLH A;  3GQ8 A;  4OZY A;  1H80 A;  3GQA A;  1OOC A;  4URR A;  4XLC A;  4Z03 A;  1IA5 A;  2INV A;  4XM3 A;  3KRG A;  3VSU A;  3VMW A;  2QXZ A;  4I84 A;  1RWR A;  4XKW A;  1RU4 A;  2ODL A;  1O8H A;  4YZQ A;  3B4N A;  1KCC A;  2QX3 A;  2VBK A;  2X6Y A;  1O8D A;  4XOT A;  1X0C A;  3B8Y A;  3GRH A;  2VJI A;  4U4B A;  3UW0 A;  1O8I A;  4XLF A;  2NT9 A;  4NK6 A;  1K5C A;  1OFL A;  4AVZ A;  1QCX A;  4Z05 A;  4XLA A;  1KCD A;  1PXZ A;  4C2L A;  5C1C A;  1IDJ A;  3SUC A;  1BN8 A;  4EW9 A;  2X6X A;  4W8S A;  2X85 A;  4XL9 A;  4PMH A;  1JTA A;  2QY1 A;  1PE9 A;  2NTP A;  1O8K A;  1WMR A;  2EWE A;  1GQ8 A;  2NTQ A;  4XN3 A;  1OFM A;  4YZX A;  2NZM A;  2BSP A;  4XLE A;  4MR0 A;  4XR6 A;  1IB4 A;  1DBO A;  3GQ7 A;  2O04 A;  2VJJ A;  2O0W A;  4OJ5 A;  2VBE A;  1O88 A;  3LMW A;  3ZPP A;  1EE6 A;  4XMY A;  5AMV A;  1KTW A;  2UVF A;  4OJP A;  4XN0 A;  3B90 A;  2VBM A;  4OJL A;  2NSP A;  3VMV A;  2NT6 A;  4YEJ A;  1OGM X;  2X3H A;  2O0V A;  2X6W A;  4Z06 A;  4XQF A;  4YZ0 A;  3JUR A;  2NST A;  4OZZ A;  1O8L A;  3ZSC A;  3WWG A;  1IDK A;  4MXN A;  1O8G A;  1AIR A;  1JRG A;  4XOR A;  2INU A;  2Z8G A;  4OJ6 A;  4W8T A;  2O1D A;  4W8R A;  5C1E A;  2UVE A;  2PYG A;  1RMG A;  3FY3 A;  3EQO A;  3GQ9 A;  1XG2 A;  4XOP A;  3VSV A;  2NTB A;  4U49 A;  3T9G A;  1DBG A;  1PLU A;  1NHC A;  1O8J A;  2O17 A;  1OGO X;  4W8Q A;  4OJO A;  1O8E A; 
#chains in the Genus database with same CATH topology
 1LLW A;  2PEC A;  2PYH A;  1BHE A;  4XON A;  5JLV C;  1O8F A;  3PSS A;  2XT4 A;  4HWV A;  1WXR A;  3EQN A;  4NK8 A;  1K8F A;  3N90 A;  2IQ7 A;  1QJV A;  4YCQ A;  1K4Z A;  3SQV A;  1O8M A;  4XNF A;  3VST A;  1VBL A;  3PSZ A;  4XKV A;  4YEL A;  2VFO A;  3NAW A;  1HG8 A;  4KH3 A;  1CZF A;  2VFQ A;  2BM5 A;  2J8K A;  3N6Z A;  4YZA A;  4XLH A;  3GQ8 A;  1TYV A;  2QZA A;  1H80 A;  3GQA A;  1OOC A;  4OZY A;  4URR A;  4XLC A;  4Z03 A;  3RIQ A;  1QA2 A;  1L1I A;  5JMC B;  2XT2 A;  1IA5 A;  2BX6 A;  2INV A;  2O6W A;  2V5I A;  2VFN A;  4XM3 A;  2YUH A;  3TH0 A;  3KRG A;  3VSU A;  1EZG A;  3VMW A;  1DAB A;  2J8I A;  2QXZ A;  4YC5 A;  4I84 A;  1RWR A;  4XKW A;  3BH7 B;  1RU4 A;  4JRA C;  2B0R A;  1O8H A;  1TYW A;  2ODL A;  4YZQ A;  3B4N A;  1KCC A;  2QX3 A;  2VBK A;  2X6Y A;  1O8D A;  1EA0 A;  4XOT A;  2XTY A;  4OM9 A;  1TSP A;  1OFD A;  1X0C A;  3B8Y A;  3GRH A;  2VJI A;  4U4B A;  3UW0 A;  1O8I A;  1TYX A;  3PET A;  3H09 A;  4XLF A;  3P4G A;  2NT9 A;  1CLW A;  2VFP A;  4NK6 A;  3JX8 A;  1K5C A;  1OFL A;  4AVZ A;  1QCX A;  4Z05 A;  2BM7 A;  1QA1 A;  4XLA A;  1KCD A;  1PXZ A;  4C2L A;  3DU1 X;  1LM1 A;  3BH6 B;  5C1C A;  1TYU A;  3SY2 A;  1IDJ A;  3SUC A;  1BN8 A;  4EW9 A;  2X6X A;  4YFO A;  4W8S A;  2X85 A;  4XL9 A;  4PMH A;  1JTA A;  1HF2 A;  2QY1 A;  1PE9 A;  2NTP A;  1O8K A;  1WMR A;  2EWE A;  1GQ8 A;  2NTQ A;  4XN3 A;  1OFM A;  4YZX A;  2NZM A;  2BSP A;  4OPW A;  4MR0 A;  4XLE A;  5DNS A;  3NB2 A;  4XR6 A;  1IB4 A;  1DBO A;  3GQ7 A;  2O04 A;  2VJJ A;  4YDT A;  1OFE A;  2O0W A;  2G0Y A;  2QYU A;  2XC1 A;  4OJ5 A;  2VBE A;  4V02 C;  1O88 A;  3LMW A;  3ZPP A;  1KQ5 A;  1EE6 A;  1QRB A;  4XMY A;  1KTW A;  5AMV A;  1LLZ A;  3SYJ A;  1QA3 A;  2UVF A;  3AK5 A;  4OJP A;  4XN0 A;  3B90 A;  2XTW A;  2VBM A;  4OJL A;  2NSP A;  3VMV A;  2NT6 A;  4YEJ A;  1OGM X;  2X3H A;  1QRC A;  2O0V A;  2X6W A;  4Z06 A;  4YEI A;  3LYC A;  4XQF A;  4YZ0 A;  3JUR A;  2NST A;  4OZZ A;  1O8L A;  3ZSC A;  3WWG A;  1IDK A;  3LJY A;  4MXN A;  1O8G A;  1AIR A;  1QQ1 A;  2VFM A;  1JRG A;  4XOR A;  2INU A;  3SZE A;  2BM6 A;  2IOU G;  2Z8G A;  4OJ6 A;  4W8T A;  2F3L A;  2O1D A;  4W8R A;  3ML3 A;  5C1E A;  2UVE A;  2PYG A;  1RMG A;  3FY3 A;  3EQO A;  3GQ9 A;  1XG2 A;  4XOP A;  3VSV A;  2NTB A;  4U49 A;  2XTX A;  3T9G A;  1DBG A;  1PLU A;  1NHC A;  1O8J A;  2O17 A;  2BM4 A;  1OGO X;  4W8Q A;  4OJO A;  1O8E A;  2W7Z A; 
#chains in the Genus database with same CATH homology
 2PEC A;  2PYH A;  1BHE A;  4XON A;  1O8F A;  4HWV A;  3EQN A;  4NK8 A;  2IQ7 A;  1QJV A;  1O8M A;  4XNF A;  3VST A;  1VBL A;  4XKV A;  4YEL A;  1HG8 A;  1CZF A;  4YZA A;  4XLH A;  3GQ8 A;  4OZY A;  1H80 A;  3GQA A;  1OOC A;  4URR A;  4XLC A;  4Z03 A;  1IA5 A;  2INV A;  4XM3 A;  3KRG A;  3VSU A;  3VMW A;  2QXZ A;  4I84 A;  1RWR A;  4XKW A;  1RU4 A;  2ODL A;  1O8H A;  4YZQ A;  3B4N A;  1KCC A;  2QX3 A;  2VBK A;  2X6Y A;  1O8D A;  4XOT A;  1X0C A;  3B8Y A;  3GRH A;  2VJI A;  4U4B A;  3UW0 A;  1O8I A;  4XLF A;  2NT9 A;  4NK6 A;  1K5C A;  1OFL A;  4AVZ A;  1QCX A;  4Z05 A;  4XLA A;  1KCD A;  1PXZ A;  4C2L A;  5C1C A;  1IDJ A;  3SUC A;  1BN8 A;  4EW9 A;  2X6X A;  4W8S A;  2X85 A;  4XL9 A;  4PMH A;  1JTA A;  2QY1 A;  1PE9 A;  2NTP A;  1O8K A;  1WMR A;  2EWE A;  1GQ8 A;  2NTQ A;  4XN3 A;  1OFM A;  4YZX A;  2NZM A;  2BSP A;  4XLE A;  4MR0 A;  4XR6 A;  1IB4 A;  1DBO A;  3GQ7 A;  2O04 A;  2VJJ A;  2O0W A;  4OJ5 A;  2VBE A;  1O88 A;  3LMW A;  3ZPP A;  1EE6 A;  4XMY A;  5AMV A;  1KTW A;  2UVF A;  4OJP A;  4XN0 A;  3B90 A;  2VBM A;  4OJL A;  2NSP A;  3VMV A;  2NT6 A;  4YEJ A;  1OGM X;  2X3H A;  2O0V A;  2X6W A;  4Z06 A;  4XQF A;  4YZ0 A;  3JUR A;  2NST A;  4OZZ A;  1O8L A;  3ZSC A;  3WWG A;  1IDK A;  4MXN A;  1O8G A;  1AIR A;  1JRG A;  4XOR A;  2INU A;  2Z8G A;  4OJ6 A;  4W8T A;  2O1D A;  4W8R A;  5C1E A;  2UVE A;  2PYG A;  1RMG A;  3FY3 A;  3EQO A;  3GQ9 A;  1XG2 A;  4XOP A;  3VSV A;  2NTB A;  4U49 A;  3T9G A;  1DBG A;  1PLU A;  1NHC A;  1O8J A;  2O17 A;  1OGO X;  4W8Q A;  4OJO A;  1O8E A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...