2O0WA

Pectate lyase bound to hexasaccharide compound iv
Total Genus 160
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pectate lyase
publication title Structural and thermodynamic insights into the mechanism of pectate lyase
rcsb
source organism Bacillus subtilis
molecule tags Lyase
total genus 160
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2o0wA00
4OJPA 2NTBA 2NTQA 1OFMA 1AIRA 3WWGA 2O17A 4OJ5A 1O8MA 1EE6A 1NHCA 1K5CA 2VJJA 1VBLA 2VBMA 4XOTA 5AMVA 4YZQA 2VBEA 2X6WA 4XN0A 4YZ0A 4U49A 4XLHA 2X3HA 1QCXA 1OFLA 4W8RA 4OJ6A 3GQAA 4C2LA 3KRGA 4XMYA 4Z03A 3FY3A 1PE9A 2X85A 2X6YA 1O8EA 3B4NA 1JTAA 2INUA 2PECA 1WMRA 5C1CA 4XONA 1O8KA 1O8FA 2X6XA 1IDJA 4OJOA 1OGOX 4PMHA 4EW9A 3VSVA 2NZMA 2NT9A 4XKVA 1GQ8A 1O8DA 3B90A 1KCCA 4XR6A 4W8QA 4W8SA 2Z8GA 4MXNA 1XG2A 4XNFA 1OGMX 3ZPPA 2O0WA 1BN8A 2EWEA 4I84A 4XL9A 1RU4A 4XLEA 3VMVA 3GQ8A 1JRGA 3SUCA 2NSPA 3GRHA 4HWVA 2UVEA 2O04A 2BSPA 1H80A 1IB4A 1QJVA 4XLAA 3T9GA 1KTWA 2PYHA 4YELA 1PLUA 4XQFA 3VSUA 2ODLA 4URRA 1CZFA 3VMWA 1IDKA 4YZXA 4XORA 4W8TA 1O8GA 1O8IA 3EQNA 4U4BA 1RWRA 3JURA 2QXZA 3EQOA 1O88A 1DBGA 3GQ7A 4YEJA 4MR0A 5C1EA 2UVFA 4NK8A 2NTPA 2QX3A 4OZZA 4OZYA 4OJLA 4XLCA 4Z05A 1DBOA 3LMWA 4NK6A 2NT6A 1KCDA 2IQ7A 3UW0A 4XM3A 1RMGA 3VSTA 1HG8A 2O0VA 2O1DA 4XKWA 1O8LA 2VJIA 1PXZA 1O8HA 4Z06A 1IA5A 4YZAA 2PYGA 3B8YA 4AVZA 1BHEA 4XOPA 2NSTA 2QY1A 2VBKA 3GQ9A 3ZSCA 1X0CA 2INVA 4XN3A 4XLFA 1O8JA 1OOCA
chains in the Genus database with same CATH superfamily
4OJPA 2NTBA 2NTQA 2VFNA 1OFMA 3PETA 1OFDA 1QA3A 2VFQA 1AIRA 2F3LA 3WWGA 2O17A 1HF2A 4OJ5A 1O8MA 1EE6A 1EA0A 1NHCA 1K4ZA 3H09A 1TYWA 1K5CA 3SYJA 3PSSA 2VJJA 1VBLA 2VBMA 4XOTA 5AMVA 4YZQA 2W7ZA 4YCQA 1TSPA 2O6WA 4KH3A 2VBEA 2X6WA 5DNSA 4XN0A 2XTWA 4YZ0A 5JLVC 1TYXA 4U49A 2X3HA 4XLHA 1QCXA 3BH6B 3AK5A 1OFLA 4W8RA 4OJ6A 3GQAA 4C2LA 2B0RA 3KRGA 4XMYA 4Z03A 3FY3A 1PE9A 4YEIA 3DU1X 2X85A 2X6YA 1O8EA 3LJYA 3B4NA 1L1IA 1JTAA 2INUA 2PECA 2VFPA 1WMRA 3LYCA 2J8KA 5C1CA 4XONA 1O8KA 1QA2A 1O8FA 2X6XA 1IDJA 4OJOA 1OGOX 4PMHA 3N90A 4EW9A 3VSVA 1TYVA 2NZMA 2NT9A 4XKVA 3SZEA 1GQ8A 1O8DA 3B90A 1KCCA 2XT2A 4XR6A 4W8QA 4W8SA 1QA1A 2Z8GA 4MXNA 1XG2A 2G0YA 4XNFA 3TH0A 1OGMX 3ZPPA 2O0WA 2XC1A 1BN8A 2EWEA 1K8FA 1CLWA 1RU4A 1QRBA 4I84A 4XL9A 4XLEA 3GQ8A 2BM6A 1JRGA 4YC5A 3SUCA 1QRCA 4YFOA 3SY2A 2NSPA 1EZGA 2YUHA 1KQ5A 3GRHA 4HWVA 2UVEA 1LLZA 2O04A 2BSPA 1H80A 2BM7A 1IB4A 1QJVA 4XLAA 3T9GA 2V5IA 1WXRA 1KTWA 5C1EA 2PYHA 4YELA 2QYUA 1PLUA 3ML3A 1LM1A 3NB2A 3VSUA 4XQFA 2ODLA 4URRA 1CZFA 3VMWA 1IDKA 3NAWA 4YZXA 3SQVA 4XORA 3N6ZA 4W8TA 1O8GA 4OPWA 1LLWA 1O8IA 2BX6A 3EQNA 4U4BA 2BM5A 1RWRA 3JURA 5JMCB 2QXZA 2J8IA 2VFMA 3EQOA 1O88A 1DBGA 3GQ7A 4YEJA 4MR0A 3PSZA 2UVFA 1QQ1A 2XTXA 2NTPA 2QX3A 4NK8A 4OZZA 4OZYA 4OJLA 4OM9A 4XLCA 4Z05A 1DBOA 2XT4A 3LMWA 2NT6A 4NK6A 4V02C 1KCDA 2IQ7A 3UW0A 4XM3A 1RMGA 3VSTA 2XTYA 1HG8A 2O0VA 2O1DA 2QZAA 4XKWA 1O8LA 1TYUA 2VJIA 2IOUG 1PXZA 3RIQA 1O8HA 4Z06A 1IA5A 4YZAA 2BM4A 3P4GA 2PYGA 3B8YA 4AVZA 3JX8A 1BHEA 4XOPA 2NSTA 2QY1A 2VBKA 3GQ9A 3ZSCA 2VFOA 3VMVA 1OFEA 1X0CA 2INVA 4XN3A 4JRAC 4XLFA 4YDTA 3BH7B 1O8JA 1OOCA 1DABA
chains in the Genus database with same CATH topology
4OJPA 2NTBA 2NTQA 1OFMA 1AIRA 3WWGA 2O17A 4OJ5A 1O8MA 1EE6A 1NHCA 1K5CA 2VJJA 1VBLA 2VBMA 4XOTA 5AMVA 4YZQA 2VBEA 2X6WA 4XN0A 4YZ0A 4U49A 4XLHA 2X3HA 1QCXA 1OFLA 4W8RA 4OJ6A 3GQAA 4C2LA 3KRGA 4XMYA 4Z03A 3FY3A 1PE9A 2X85A 2X6YA 1O8EA 3B4NA 1JTAA 2INUA 2PECA 1WMRA 5C1CA 4XONA 1O8KA 1O8FA 2X6XA 1IDJA 4OJOA 1OGOX 4PMHA 4EW9A 3VSVA 2NZMA 2NT9A 4XKVA 1GQ8A 1O8DA 3B90A 1KCCA 4XR6A 4W8QA 4W8SA 2Z8GA 4MXNA 1XG2A 4XNFA 1OGMX 3ZPPA 2O0WA 1BN8A 2EWEA 4I84A 4XL9A 1RU4A 4XLEA 3VMVA 3GQ8A 1JRGA 3SUCA 2NSPA 3GRHA 4HWVA 2UVEA 2O04A 2BSPA 1H80A 1IB4A 1QJVA 4XLAA 3T9GA 1KTWA 2PYHA 4YELA 1PLUA 4XQFA 3VSUA 2ODLA 4URRA 1CZFA 3VMWA 1IDKA 4YZXA 4XORA 4W8TA 1O8GA 1O8IA 3EQNA 4U4BA 1RWRA 3JURA 2QXZA 3EQOA 1O88A 1DBGA 3GQ7A 4YEJA 4MR0A 5C1EA 2UVFA 4NK8A 2NTPA 2QX3A 4OZZA 4OZYA 4OJLA 4XLCA 4Z05A 1DBOA 3LMWA 4NK6A 2NT6A 1KCDA 2IQ7A 3UW0A 4XM3A 1RMGA 3VSTA 1HG8A 2O0VA 2O1DA 4XKWA 1O8LA 2VJIA 1PXZA 1O8HA 4Z06A 1IA5A 4YZAA 2PYGA 3B8YA 4AVZA 1BHEA 4XOPA 2NSTA 2QY1A 2VBKA 3GQ9A 3ZSCA 1X0CA 2INVA 4XN3A 4XLFA 1O8JA 1OOCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OJP A;  2NTB A;  2NTQ A;  1OFM A;  1AIR A;  3WWG A;  2O17 A;  4OJ5 A;  1O8M A;  1EE6 A;  1NHC A;  1K5C A;  2VJJ A;  1VBL A;  2VBM A;  4XOT A;  5AMV A;  4YZQ A;  2VBE A;  2X6W A;  4XN0 A;  4YZ0 A;  4U49 A;  4XLH A;  2X3H A;  1QCX A;  1OFL A;  4W8R A;  4OJ6 A;  3GQA A;  4C2L A;  3KRG A;  4XMY A;  4Z03 A;  3FY3 A;  1PE9 A;  2X85 A;  2X6Y A;  1O8E A;  3B4N A;  1JTA A;  2INU A;  2PEC A;  1WMR A;  5C1C A;  4XON A;  1O8K A;  1O8F A;  2X6X A;  1IDJ A;  4OJO A;  1OGO X;  4PMH A;  4EW9 A;  3VSV A;  2NZM A;  2NT9 A;  4XKV A;  1GQ8 A;  1O8D A;  3B90 A;  1KCC A;  4XR6 A;  4W8Q A;  4W8S A;  2Z8G A;  4MXN A;  1XG2 A;  4XNF A;  1OGM X;  3ZPP A;  2O0W A;  1BN8 A;  2EWE A;  4I84 A;  4XL9 A;  1RU4 A;  4XLE A;  3VMV A;  3GQ8 A;  1JRG A;  3SUC A;  2NSP A;  3GRH A;  4HWV A;  2UVE A;  2O04 A;  2BSP A;  1H80 A;  1IB4 A;  1QJV A;  4XLA A;  3T9G A;  1KTW A;  2PYH A;  4YEL A;  1PLU A;  4XQF A;  3VSU A;  2ODL A;  4URR A;  1CZF A;  3VMW A;  1IDK A;  4YZX A;  4XOR A;  4W8T A;  1O8G A;  1O8I A;  3EQN A;  4U4B A;  1RWR A;  3JUR A;  2QXZ A;  3EQO A;  1O88 A;  1DBG A;  3GQ7 A;  4YEJ A;  4MR0 A;  5C1E A;  2UVF A;  4NK8 A;  2NTP A;  2QX3 A;  4OZZ A;  4OZY A;  4OJL A;  4XLC A;  4Z05 A;  1DBO A;  3LMW A;  4NK6 A;  2NT6 A;  1KCD A;  2IQ7 A;  3UW0 A;  4XM3 A;  1RMG A;  3VST A;  1HG8 A;  2O0V A;  2O1D A;  4XKW A;  1O8L A;  2VJI A;  1PXZ A;  1O8H A;  4Z06 A;  1IA5 A;  4YZA A;  2PYG A;  3B8Y A;  4AVZ A;  1BHE A;  4XOP A;  2NST A;  2QY1 A;  2VBK A;  3GQ9 A;  3ZSC A;  1X0C A;  2INV A;  4XN3 A;  4XLF A;  1O8J A;  1OOC A; 
#chains in the Genus database with same CATH topology
 4OJP A;  2NTB A;  2NTQ A;  2VFN A;  1OFM A;  3PET A;  1OFD A;  1QA3 A;  2VFQ A;  1AIR A;  2F3L A;  3WWG A;  2O17 A;  1HF2 A;  4OJ5 A;  1O8M A;  1EE6 A;  1EA0 A;  1NHC A;  1K4Z A;  3H09 A;  1TYW A;  1K5C A;  3SYJ A;  3PSS A;  2VJJ A;  1VBL A;  2VBM A;  4XOT A;  5AMV A;  4YZQ A;  2W7Z A;  4YCQ A;  1TSP A;  2O6W A;  4KH3 A;  2VBE A;  2X6W A;  5DNS A;  4XN0 A;  2XTW A;  4YZ0 A;  5JLV C;  1TYX A;  4U49 A;  2X3H A;  4XLH A;  1QCX A;  3BH6 B;  3AK5 A;  1OFL A;  4W8R A;  4OJ6 A;  3GQA A;  4C2L A;  2B0R A;  3KRG A;  4XMY A;  4Z03 A;  3FY3 A;  1PE9 A;  4YEI A;  3DU1 X;  2X85 A;  2X6Y A;  1O8E A;  3LJY A;  3B4N A;  1L1I A;  1JTA A;  2INU A;  2PEC A;  2VFP A;  1WMR A;  3LYC A;  2J8K A;  5C1C A;  4XON A;  1O8K A;  1QA2 A;  1O8F A;  2X6X A;  1IDJ A;  4OJO A;  1OGO X;  4PMH A;  3N90 A;  4EW9 A;  3VSV A;  1TYV A;  2NZM A;  2NT9 A;  4XKV A;  3SZE A;  1GQ8 A;  1O8D A;  3B90 A;  1KCC A;  2XT2 A;  4XR6 A;  4W8Q A;  4W8S A;  1QA1 A;  2Z8G A;  4MXN A;  1XG2 A;  2G0Y A;  4XNF A;  3TH0 A;  1OGM X;  3ZPP A;  2O0W A;  2XC1 A;  1BN8 A;  2EWE A;  1K8F A;  1CLW A;  1RU4 A;  1QRB A;  4I84 A;  4XL9 A;  4XLE A;  3GQ8 A;  2BM6 A;  1JRG A;  4YC5 A;  3SUC A;  1QRC A;  4YFO A;  3SY2 A;  2NSP A;  1EZG A;  2YUH A;  1KQ5 A;  3GRH A;  4HWV A;  2UVE A;  1LLZ A;  2O04 A;  2BSP A;  1H80 A;  2BM7 A;  1IB4 A;  1QJV A;  4XLA A;  3T9G A;  2V5I A;  1WXR A;  1KTW A;  5C1E A;  2PYH A;  4YEL A;  2QYU A;  1PLU A;  3ML3 A;  1LM1 A;  3NB2 A;  3VSU A;  4XQF A;  2ODL A;  4URR A;  1CZF A;  3VMW A;  1IDK A;  3NAW A;  4YZX A;  3SQV A;  4XOR A;  3N6Z A;  4W8T A;  1O8G A;  4OPW A;  1LLW A;  1O8I A;  2BX6 A;  3EQN A;  4U4B A;  2BM5 A;  1RWR A;  3JUR A;  5JMC B;  2QXZ A;  2J8I A;  2VFM A;  3EQO A;  1O88 A;  1DBG A;  3GQ7 A;  4YEJ A;  4MR0 A;  3PSZ A;  2UVF A;  1QQ1 A;  2XTX A;  2NTP A;  2QX3 A;  4NK8 A;  4OZZ A;  4OZY A;  4OJL A;  4OM9 A;  4XLC A;  4Z05 A;  1DBO A;  2XT4 A;  3LMW A;  2NT6 A;  4NK6 A;  4V02 C;  1KCD A;  2IQ7 A;  3UW0 A;  4XM3 A;  1RMG A;  3VST A;  2XTY A;  1HG8 A;  2O0V A;  2O1D A;  2QZA A;  4XKW A;  1O8L A;  1TYU A;  2VJI A;  2IOU G;  1PXZ A;  3RIQ A;  1O8H A;  4Z06 A;  1IA5 A;  4YZA A;  2BM4 A;  3P4G A;  2PYG A;  3B8Y A;  4AVZ A;  3JX8 A;  1BHE A;  4XOP A;  2NST A;  2QY1 A;  2VBK A;  3GQ9 A;  3ZSC A;  2VFO A;  3VMV A;  1OFE A;  1X0C A;  2INV A;  4XN3 A;  4JRA C;  4XLF A;  4YDT A;  3BH7 B;  1O8J A;  1OOC A;  1DAB A; 
#chains in the Genus database with same CATH homology
 4OJP A;  2NTB A;  2NTQ A;  1OFM A;  1AIR A;  3WWG A;  2O17 A;  4OJ5 A;  1O8M A;  1EE6 A;  1NHC A;  1K5C A;  2VJJ A;  1VBL A;  2VBM A;  4XOT A;  5AMV A;  4YZQ A;  2VBE A;  2X6W A;  4XN0 A;  4YZ0 A;  4U49 A;  4XLH A;  2X3H A;  1QCX A;  1OFL A;  4W8R A;  4OJ6 A;  3GQA A;  4C2L A;  3KRG A;  4XMY A;  4Z03 A;  3FY3 A;  1PE9 A;  2X85 A;  2X6Y A;  1O8E A;  3B4N A;  1JTA A;  2INU A;  2PEC A;  1WMR A;  5C1C A;  4XON A;  1O8K A;  1O8F A;  2X6X A;  1IDJ A;  4OJO A;  1OGO X;  4PMH A;  4EW9 A;  3VSV A;  2NZM A;  2NT9 A;  4XKV A;  1GQ8 A;  1O8D A;  3B90 A;  1KCC A;  4XR6 A;  4W8Q A;  4W8S A;  2Z8G A;  4MXN A;  1XG2 A;  4XNF A;  1OGM X;  3ZPP A;  2O0W A;  1BN8 A;  2EWE A;  4I84 A;  4XL9 A;  1RU4 A;  4XLE A;  3VMV A;  3GQ8 A;  1JRG A;  3SUC A;  2NSP A;  3GRH A;  4HWV A;  2UVE A;  2O04 A;  2BSP A;  1H80 A;  1IB4 A;  1QJV A;  4XLA A;  3T9G A;  1KTW A;  2PYH A;  4YEL A;  1PLU A;  4XQF A;  3VSU A;  2ODL A;  4URR A;  1CZF A;  3VMW A;  1IDK A;  4YZX A;  4XOR A;  4W8T A;  1O8G A;  1O8I A;  3EQN A;  4U4B A;  1RWR A;  3JUR A;  2QXZ A;  3EQO A;  1O88 A;  1DBG A;  3GQ7 A;  4YEJ A;  4MR0 A;  5C1E A;  2UVF A;  4NK8 A;  2NTP A;  2QX3 A;  4OZZ A;  4OZY A;  4OJL A;  4XLC A;  4Z05 A;  1DBO A;  3LMW A;  4NK6 A;  2NT6 A;  1KCD A;  2IQ7 A;  3UW0 A;  4XM3 A;  1RMG A;  3VST A;  1HG8 A;  2O0V A;  2O1D A;  4XKW A;  1O8L A;  2VJI A;  1PXZ A;  1O8H A;  4Z06 A;  1IA5 A;  4YZA A;  2PYG A;  3B8Y A;  4AVZ A;  1BHE A;  4XOP A;  2NST A;  2QY1 A;  2VBK A;  3GQ9 A;  3ZSC A;  1X0C A;  2INV A;  4XN3 A;  4XLF A;  1O8J A;  1OOC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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