2O0WA

Pectate lyase bound to hexasaccharide compound iv
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
399
structure length
399
Chain Sequence
b'ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pectate lyase
publication title Structural and thermodynamic insights into the mechanism of pectate lyase
rcsb
source organism Bacillus subtilis
molecule tags Lyase
total genus 160
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2o0wA00
1OGOX 2NT9A 2O1DA 4OJ5A 4OJ6A 2NSTA 1BHEA 2X6WA 4XN3A 4OJOA 4YZQA 1QCXA 4YZ0A 4OJLA 1PE9A 4XKWA 2ODLA 3ZSCA 1BN8A 2VJIA 4XMYA 2UVFA 4HWVA 4OZYA 1XG2A 2VBEA 1KCDA 3B8YA 4MXNA 1X0CA 1O8JA 4Z06A 2QX3A 4XM3A 1OFMA 1O8IA 1EE6A 4I84A 1O8EA 3JURA 5AMVA 1O8LA 4XLAA 4W8SA 3ZPPA 3GRHA 3VSTA 4XL9A 4W8RA 4XONA 3B4NA 4YELA 2O0WA 2O17A 4U49A 4W8TA 3B90A 3KRGA 1KCCA 1DBGA 1KTWA 4YZAA 2BSPA 4OZZA 4EW9A 2VJJA 3VSVA 2NTPA 4URRA 2PECA 1IB4A 2NTBA 3WWGA 4MR0A 2Z8GA 2EWEA 1AIRA 2VBKA 2PYGA 2X85A 1JTAA 1O8GA 1RWRA 2NSPA 1O8MA 1VBLA 3VSUA 1IDKA 3UW0A 3GQAA 3GQ9A 4PMHA 4XLEA 1GQ8A 3EQOA 2INVA 3FY3A 3SUCA 4XR6A 4XOPA 1PXZA 4XQFA 1IDJA 1HG8A 3VMWA 3LMWA 2X3HA 2NTQA 2O0VA 2QXZA 1IA5A 1OOCA 2O04A 3GQ8A 4NK6A 4Z05A 4W8QA 4XNFA 4XKVA 4YZXA 2UVEA 4XLCA 1WMRA 2QY1A 1H80A 2X6YA 4XOTA 1RMGA 3EQNA 4Z03A 4XLHA 2NT6A 4OJPA 2NZMA 4XN0A 4U4BA 1O88A 2PYHA 2VBMA 4AVZA 1NHCA 1O8KA 3T9GA 1QJVA 4YEJA 3VMVA 4NK8A 4C2LA 1O8FA 5C1CA 1CZFA 2X6XA 2IQ7A 1RU4A 1O8HA 5C1EA 1PLUA 1JRGA 2INUA 4XLFA 4XORA 1DBOA 1OGMX 1O8DA 3GQ7A 1K5CA 1OFLA
chains in the Genus database with same CATH superfamily
1OGOX 2NT9A 2O1DA 1TYXA 4OJ5A 4OJ6A 2NSTA 1BHEA 2X6WA 4XN3A 4OJOA 4YZQA 1QCXA 4YZ0A 2F3LA 3PSZA 3NAWA 4OJLA 1PE9A 4XKWA 3AK5A 2ODLA 3ZSCA 1BN8A 2VJIA 1LLZA 3H09A 4XMYA 2UVFA 4HWVA 4OZYA 1XG2A 1EA0A 2VBEA 2J8IA 1KCDA 2XTWA 2O6WA 4YFOA 3B8YA 2XC1A 4KH3A 5DNSA 4MXNA 1X0CA 1O8JA 4JRAC 2QX3A 4XM3A 1OFMA 1O8IA 4OPWA 3ML3A 1EE6A 4Z06A 1WXRA 4I84A 1O8EA 3JURA 5AMVA 1O8LA 4XLAA 4W8SA 1CLWA 3ZPPA 3GRHA 3VSTA 4XL9A 4W8RA 4XONA 3B4NA 1QA1A 1L1IA 4YELA 2O0WA 2O17A 4U49A 4W8TA 4YC5A 2XT4A 2VFOA 3SZEA 4OM9A 3SY2A 2VFMA 4YEIA 3B90A 3KRGA 1KCCA 2BM5A 1DBGA 1KTWA 4YZAA 2BM4A 2BSPA 2B0RA 4OZZA 4EW9A 2VJJA 3VSVA 3N90A 2NTPA 4URRA 2PECA 1IB4A 2NTBA 1TYWA 1OFEA 2XT2A 2YUHA 3WWGA 4MR0A 2QYUA 1HF2A 2Z8GA 2EWEA 1AIRA 1OFDA 2VBKA 4YCQA 2PYGA 2X85A 2W7ZA 1JTAA 1O8GA 3PETA 1QA2A 1RWRA 2NSPA 1O8MA 1VBLA 3VSUA 1IDKA 2VFPA 2V5IA 3UW0A 3GQAA 3RIQA 3GQ9A 4PMHA 4XLEA 3PSSA 1DABA 3SYJA 2IOUG 1KQ5A 1GQ8A 2XTXA 3EQOA 5JLVC 1TSPA 2BM7A 2QZAA 3P4GA 4YDTA 1LLWA 1TYVA 2INVA 1TYUA 3FY3A 3SUCA 2G0YA 4XR6A 4XOPA 1PXZA 4XQFA 3BH6B 1IDJA 2VFQA 1HG8A 1K4ZA 3VMWA 3LMWA 2X3HA 2NTQA 2O0VA 2QXZA 1IA5A 3JX8A 2BM6A 1OOCA 2O04A 1K8FA 3GQ8A 4NK6A 1QRBA 4Z05A 4W8QA 4XNFA 4XKVA 4YZXA 2UVEA 4XLCA 4V02C 1WMRA 2QY1A 1H80A 2X6YA 3N6ZA 2BX6A 4XOTA 1QQ1A 1RMGA 1EZGA 3EQNA 2J8KA 4XLHA 2XTYA 2NT6A 4Z03A 4OJPA 2NZMA 4XN0A 4U4BA 1O88A 1QA3A 1QRCA 2PYHA 2VBMA 4AVZA 3LYCA 1NHCA 3DU1X 1O8KA 3T9GA 1QJVA 4YEJA 3VMVA 4NK8A 4C2LA 1O8FA 5C1CA 1CZFA 2X6XA 1LM1A 2IQ7A 1RU4A 3TH0A 1O8HA 3SQVA 5C1EA 3LJYA 1PLUA 1JRGA 5JMCB 2INUA 4XLFA 4XORA 3BH7B 1DBOA 1OGMX 1O8DA 2VFNA 3NB2A 3GQ7A 1K5CA 1OFLA
chains in the Genus database with same CATH topology
1OGOX 2NT9A 2O1DA 4OJ5A 4OJ6A 2NSTA 1BHEA 2X6WA 4XN3A 4OJOA 4YZQA 1QCXA 4YZ0A 4OJLA 1PE9A 4XKWA 2ODLA 3ZSCA 1BN8A 2VJIA 4XMYA 2UVFA 4HWVA 4OZYA 1XG2A 2VBEA 1KCDA 3B8YA 4MXNA 1X0CA 1O8JA 4Z06A 2QX3A 4XM3A 1OFMA 1O8IA 1EE6A 4I84A 1O8EA 3JURA 5AMVA 1O8LA 4XLAA 4W8SA 3ZPPA 3GRHA 3VSTA 4XL9A 4W8RA 4XONA 3B4NA 4YELA 2O0WA 2O17A 4U49A 4W8TA 3B90A 3KRGA 1KCCA 1DBGA 1KTWA 4YZAA 2BSPA 4OZZA 4EW9A 2VJJA 3VSVA 2NTPA 4URRA 2PECA 1IB4A 2NTBA 3WWGA 4MR0A 2Z8GA 2EWEA 1AIRA 2VBKA 2PYGA 2X85A 1JTAA 1O8GA 1RWRA 2NSPA 1O8MA 1VBLA 3VSUA 1IDKA 3UW0A 3GQAA 3GQ9A 4PMHA 4XLEA 1GQ8A 3EQOA 2INVA 3FY3A 3SUCA 4XR6A 4XOPA 1PXZA 4XQFA 1IDJA 1HG8A 3VMWA 3LMWA 2X3HA 2NTQA 2O0VA 2QXZA 1IA5A 1OOCA 2O04A 3GQ8A 4NK6A 4Z05A 4W8QA 4XNFA 4XKVA 4YZXA 2UVEA 4XLCA 1WMRA 2QY1A 1H80A 2X6YA 4XOTA 1RMGA 3EQNA 4Z03A 4XLHA 2NT6A 4OJPA 2NZMA 4XN0A 4U4BA 1O88A 2PYHA 2VBMA 4AVZA 1NHCA 1O8KA 3T9GA 1QJVA 4YEJA 3VMVA 4NK8A 4C2LA 1O8FA 5C1CA 1CZFA 2X6XA 2IQ7A 1RU4A 1O8HA 5C1EA 1PLUA 1JRGA 2INUA 4XLFA 4XORA 1DBOA 1OGMX 1O8DA 3GQ7A 1K5CA 1OFLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OGO X;  2NT9 A;  2O1D A;  4OJ5 A;  4OJ6 A;  2NST A;  1BHE A;  2X6W A;  4XN3 A;  4OJO A;  4YZQ A;  1QCX A;  4YZ0 A;  4OJL A;  1PE9 A;  4XKW A;  2ODL A;  3ZSC A;  1BN8 A;  2VJI A;  4XMY A;  2UVF A;  4HWV A;  4OZY A;  1XG2 A;  2VBE A;  1KCD A;  3B8Y A;  4MXN A;  1X0C A;  1O8J A;  4Z06 A;  2QX3 A;  4XM3 A;  1OFM A;  1O8I A;  1EE6 A;  4I84 A;  1O8E A;  3JUR A;  5AMV A;  1O8L A;  4XLA A;  4W8S A;  3ZPP A;  3GRH A;  3VST A;  4XL9 A;  4W8R A;  4XON A;  3B4N A;  4YEL A;  2O0W A;  2O17 A;  4U49 A;  4W8T A;  3B90 A;  3KRG A;  1KCC A;  1DBG A;  1KTW A;  4YZA A;  2BSP A;  4OZZ A;  4EW9 A;  2VJJ A;  3VSV A;  2NTP A;  4URR A;  2PEC A;  1IB4 A;  2NTB A;  3WWG A;  4MR0 A;  2Z8G A;  2EWE A;  1AIR A;  2VBK A;  2PYG A;  2X85 A;  1JTA A;  1O8G A;  1RWR A;  2NSP A;  1O8M A;  1VBL A;  3VSU A;  1IDK A;  3UW0 A;  3GQA A;  3GQ9 A;  4PMH A;  4XLE A;  1GQ8 A;  3EQO A;  2INV A;  3FY3 A;  3SUC A;  4XR6 A;  4XOP A;  1PXZ A;  4XQF A;  1IDJ A;  1HG8 A;  3VMW A;  3LMW A;  2X3H A;  2NTQ A;  2O0V A;  2QXZ A;  1IA5 A;  1OOC A;  2O04 A;  3GQ8 A;  4NK6 A;  4Z05 A;  4W8Q A;  4XNF A;  4XKV A;  4YZX A;  2UVE A;  4XLC A;  1WMR A;  2QY1 A;  1H80 A;  2X6Y A;  4XOT A;  1RMG A;  3EQN A;  4Z03 A;  4XLH A;  2NT6 A;  4OJP A;  2NZM A;  4XN0 A;  4U4B A;  1O88 A;  2PYH A;  2VBM A;  4AVZ A;  1NHC A;  1O8K A;  3T9G A;  1QJV A;  4YEJ A;  3VMV A;  4NK8 A;  4C2L A;  1O8F A;  5C1C A;  1CZF A;  2X6X A;  2IQ7 A;  1RU4 A;  1O8H A;  5C1E A;  1PLU A;  1JRG A;  2INU A;  4XLF A;  4XOR A;  1DBO A;  1OGM X;  1O8D A;  3GQ7 A;  1K5C A;  1OFL A; 
#chains in the Genus database with same CATH topology
 1OGO X;  2NT9 A;  2O1D A;  1TYX A;  4OJ5 A;  4OJ6 A;  2NST A;  1BHE A;  2X6W A;  4XN3 A;  4OJO A;  4YZQ A;  1QCX A;  4YZ0 A;  2F3L A;  3PSZ A;  3NAW A;  4OJL A;  1PE9 A;  4XKW A;  3AK5 A;  2ODL A;  3ZSC A;  1BN8 A;  2VJI A;  1LLZ A;  3H09 A;  4XMY A;  2UVF A;  4HWV A;  4OZY A;  1XG2 A;  1EA0 A;  2VBE A;  2J8I A;  1KCD A;  2XTW A;  2O6W A;  4YFO A;  3B8Y A;  2XC1 A;  4KH3 A;  5DNS A;  4MXN A;  1X0C A;  1O8J A;  4JRA C;  2QX3 A;  4XM3 A;  1OFM A;  1O8I A;  4OPW A;  3ML3 A;  1EE6 A;  4Z06 A;  1WXR A;  4I84 A;  1O8E A;  3JUR A;  5AMV A;  1O8L A;  4XLA A;  4W8S A;  1CLW A;  3ZPP A;  3GRH A;  3VST A;  4XL9 A;  4W8R A;  4XON A;  3B4N A;  1QA1 A;  1L1I A;  4YEL A;  2O0W A;  2O17 A;  4U49 A;  4W8T A;  4YC5 A;  2XT4 A;  2VFO A;  3SZE A;  4OM9 A;  3SY2 A;  2VFM A;  4YEI A;  3B90 A;  3KRG A;  1KCC A;  2BM5 A;  1DBG A;  1KTW A;  4YZA A;  2BM4 A;  2BSP A;  2B0R A;  4OZZ A;  4EW9 A;  2VJJ A;  3VSV A;  3N90 A;  2NTP A;  4URR A;  2PEC A;  1IB4 A;  2NTB A;  1TYW A;  1OFE A;  2XT2 A;  2YUH A;  3WWG A;  4MR0 A;  2QYU A;  1HF2 A;  2Z8G A;  2EWE A;  1AIR A;  1OFD A;  2VBK A;  4YCQ A;  2PYG A;  2X85 A;  2W7Z A;  1JTA A;  1O8G A;  3PET A;  1QA2 A;  1RWR A;  2NSP A;  1O8M A;  1VBL A;  3VSU A;  1IDK A;  2VFP A;  2V5I A;  3UW0 A;  3GQA A;  3RIQ A;  3GQ9 A;  4PMH A;  4XLE A;  3PSS A;  1DAB A;  3SYJ A;  2IOU G;  1KQ5 A;  1GQ8 A;  2XTX A;  3EQO A;  5JLV C;  1TSP A;  2BM7 A;  2QZA A;  3P4G A;  4YDT A;  1LLW A;  1TYV A;  2INV A;  1TYU A;  3FY3 A;  3SUC A;  2G0Y A;  4XR6 A;  4XOP A;  1PXZ A;  4XQF A;  3BH6 B;  1IDJ A;  2VFQ A;  1HG8 A;  1K4Z A;  3VMW A;  3LMW A;  2X3H A;  2NTQ A;  2O0V A;  2QXZ A;  1IA5 A;  3JX8 A;  2BM6 A;  1OOC A;  2O04 A;  1K8F A;  3GQ8 A;  4NK6 A;  1QRB A;  4Z05 A;  4W8Q A;  4XNF A;  4XKV A;  4YZX A;  2UVE A;  4XLC A;  4V02 C;  1WMR A;  2QY1 A;  1H80 A;  2X6Y A;  3N6Z A;  2BX6 A;  4XOT A;  1QQ1 A;  1RMG A;  1EZG A;  3EQN A;  2J8K A;  4XLH A;  2XTY A;  2NT6 A;  4Z03 A;  4OJP A;  2NZM A;  4XN0 A;  4U4B A;  1O88 A;  1QA3 A;  1QRC A;  2PYH A;  2VBM A;  4AVZ A;  3LYC A;  1NHC A;  3DU1 X;  1O8K A;  3T9G A;  1QJV A;  4YEJ A;  3VMV A;  4NK8 A;  4C2L A;  1O8F A;  5C1C A;  1CZF A;  2X6X A;  1LM1 A;  2IQ7 A;  1RU4 A;  3TH0 A;  1O8H A;  3SQV A;  5C1E A;  3LJY A;  1PLU A;  1JRG A;  5JMC B;  2INU A;  4XLF A;  4XOR A;  3BH7 B;  1DBO A;  1OGM X;  1O8D A;  2VFN A;  3NB2 A;  3GQ7 A;  1K5C A;  1OFL A; 
#chains in the Genus database with same CATH homology
 1OGO X;  2NT9 A;  2O1D A;  4OJ5 A;  4OJ6 A;  2NST A;  1BHE A;  2X6W A;  4XN3 A;  4OJO A;  4YZQ A;  1QCX A;  4YZ0 A;  4OJL A;  1PE9 A;  4XKW A;  2ODL A;  3ZSC A;  1BN8 A;  2VJI A;  4XMY A;  2UVF A;  4HWV A;  4OZY A;  1XG2 A;  2VBE A;  1KCD A;  3B8Y A;  4MXN A;  1X0C A;  1O8J A;  4Z06 A;  2QX3 A;  4XM3 A;  1OFM A;  1O8I A;  1EE6 A;  4I84 A;  1O8E A;  3JUR A;  5AMV A;  1O8L A;  4XLA A;  4W8S A;  3ZPP A;  3GRH A;  3VST A;  4XL9 A;  4W8R A;  4XON A;  3B4N A;  4YEL A;  2O0W A;  2O17 A;  4U49 A;  4W8T A;  3B90 A;  3KRG A;  1KCC A;  1DBG A;  1KTW A;  4YZA A;  2BSP A;  4OZZ A;  4EW9 A;  2VJJ A;  3VSV A;  2NTP A;  4URR A;  2PEC A;  1IB4 A;  2NTB A;  3WWG A;  4MR0 A;  2Z8G A;  2EWE A;  1AIR A;  2VBK A;  2PYG A;  2X85 A;  1JTA A;  1O8G A;  1RWR A;  2NSP A;  1O8M A;  1VBL A;  3VSU A;  1IDK A;  3UW0 A;  3GQA A;  3GQ9 A;  4PMH A;  4XLE A;  1GQ8 A;  3EQO A;  2INV A;  3FY3 A;  3SUC A;  4XR6 A;  4XOP A;  1PXZ A;  4XQF A;  1IDJ A;  1HG8 A;  3VMW A;  3LMW A;  2X3H A;  2NTQ A;  2O0V A;  2QXZ A;  1IA5 A;  1OOC A;  2O04 A;  3GQ8 A;  4NK6 A;  4Z05 A;  4W8Q A;  4XNF A;  4XKV A;  4YZX A;  2UVE A;  4XLC A;  1WMR A;  2QY1 A;  1H80 A;  2X6Y A;  4XOT A;  1RMG A;  3EQN A;  4Z03 A;  4XLH A;  2NT6 A;  4OJP A;  2NZM A;  4XN0 A;  4U4B A;  1O88 A;  2PYH A;  2VBM A;  4AVZ A;  1NHC A;  1O8K A;  3T9G A;  1QJV A;  4YEJ A;  3VMV A;  4NK8 A;  4C2L A;  1O8F A;  5C1C A;  1CZF A;  2X6X A;  2IQ7 A;  1RU4 A;  1O8H A;  5C1E A;  1PLU A;  1JRG A;  2INU A;  4XLF A;  4XOR A;  1DBO A;  1OGM X;  1O8D A;  3GQ7 A;  1K5C A;  1OFL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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