2O0WA

Pectate lyase bound to hexasaccharide compound iv
Total Genus 160
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
molecule keywords Pectate lyase
publication title Structural and thermodynamic insights into the mechanism of pectate lyase
rcsb
source organism Bacillus subtilis
total genus 160
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2o0wA00
5C1EA 4HWVA 3EQOA 1DBGA 4XLCA 1RWRA 4I84A 4XKWA 2O0WA 2NTQA 2O1DA 4OJPA 1CZFA 2VJJA 3VSUA 1O88A 4OJ6A 4W8QA 1PE9A 4YELA 4XR6A 4W8TA 3WWGA 2NTBA 4YZAA 3GQ9A 3FY3A 4MR0A 1X0CA 3ZPPA 4AVZA 2PYGA 1GQ8A 2VBMA 4Z03A 1IDJA 1OGOX 4EW9A 1IB4A 5AMVA 4U49A 2NZMA 1VBLA 2O04A 2O17A 2NTPA 1JRGA 2BSPA 4MXNA 4XNFA 2UVEA 3VMWA 2PECA 4XLEA 1O8GA 3SUCA 4XORA 2Z8GA 1O8IA 4URRA 1KTWA 1O8LA 4W8SA 4OZYA 1PLUA 1O8JA 2VJIA 3VSVA 1K5CA 4YZXA 3VSTA 4OJ5A 2INUA 3B4NA 2IQ7A 2NSTA 3B90A 1O8DA 2X6WA 5C1CA 1QJVA 4YZQA 4XN3A 1PXZA 4XM3A 2EWEA 3T9GA 4U4BA 3GQ8A 1OOCA 4XLFA 1BHEA 2O0VA 2X85A 2QY1A 2X6XA 3EQNA 2X6YA 4NK6A 4W8RA 1IDKA 1QCXA 3GQ7A 3LMWA 1O8HA 2ODLA 3KRGA 3JURA 3GRHA 4XL9A 1HG8A 1AIRA 2NT6A 4OJLA 1IA5A 2X3HA 1NHCA 1O8FA 1RU4A 2PYHA 2INVA 4XKVA 4XN0A 2UVFA 2NSPA 4XOPA 1WMRA 1BN8A 1O8MA 4XQFA 1DBOA 3GQAA 4XOTA 4C2LA 1H80A 4XLAA 2QX3A 4OJOA 4XONA 1RMGA 3B8YA 4OZZA 4Z06A 1JTAA 1OFLA 1KCDA 1O8KA 1XG2A 4YEJA 4Z05A 4XMYA 1O8EA 2QXZA 4PMHA 4YZ0A 1OGMX 2VBEA 4XLHA 1KCCA 1OFMA 3ZSCA 1EE6A 3VMVA 3UW0A 2NT9A 2VBKA 4NK8A
chains in the Genus database with same CATH superfamily
5C1EA 4HWVA 3EQOA 2XC1A 1TYWA 2IOUG 1DBGA 4XLCA 1RWRA 1QQ1A 1EZGA 4I84A 4XKWA 3AK5A 2BX6A 2O0WA 2VFQA 3P4GA 2NTQA 1QRBA 2O1DA 4OJPA 1CZFA 2VJJA 3VSUA 3NB2A 1LM1A 1O88A 4OJ6A 4W8QA 2QYUA 2XT2A 4YDTA 1PE9A 4YELA 3N90A 2VFMA 2YUHA 4W8TA 4XR6A 2NTBA 4YZAA 3WWGA 3GQ9A 3ML3A 3FY3A 3PSSA 4MR0A 1X0CA 3ZPPA 2QZAA 4AVZA 2PYGA 4YFOA 2BM7A 1GQ8A 2VBMA 4Z03A 1IDJA 1OGOX 4EW9A 1IB4A 1QA3A 5AMVA 4U49A 1VBLA 2O04A 2NZMA 2O17A 2NTPA 2XTYA 1DABA 3LJYA 4JRAC 1JRGA 2BSPA 3SZEA 4MXNA 4XNFA 2UVEA 3VMWA 2PECA 2F3LA 4XLEA 3PETA 1O8GA 1TSPA 3SUCA 5DNSA 4XORA 2Z8GA 1O8IA 4URRA 1WXRA 1K8FA 2BM5A 1LLZA 1KTWA 1O8LA 4OM9A 4W8SA 2XTXA 4OZYA 3SQVA 1PLUA 1O8JA 2VJIA 3VSVA 1K5CA 2VFPA 4YZXA 3VSTA 3N6ZA 2INUA 1TYXA 4OJ5A 5JMCB 3B4NA 2IQ7A 2NSTA 3B90A 1O8DA 1L1IA 2X6WA 3NAWA 5C1CA 2B0RA 1QJVA 4YZQA 4XN3A 1PXZA 4XM3A 2EWEA 2XT4A 2XTWA 3SY2A 3T9GA 1QRCA 4U4BA 3GQ8A 1OOCA 4XLFA 4YC5A 1BHEA 2O0VA 2X85A 1CLWA 2QY1A 4KH3A 1QA2A 2X6XA 3EQNA 2X6YA 4NK6A 1QA1A 4W8RA 3RIQA 1IDKA 1QCXA 1EA0A 3GQ7A 2VFNA 2J8KA 3LMWA 1O8HA 2ODLA 4YEIA 3KRGA 3PSZA 3JURA 3GRHA 4XL9A 3LYCA 5JLVC 2BM6A 1HG8A 1AIRA 2NT6A 4OJLA 1IA5A 2X3HA 1NHCA 3DU1X 2BM4A 3BH7B 1O8FA 1RU4A 1LLWA 2PYHA 2INVA 4XKVA 4XN0A 1OFEA 3BH6B 2V5IA 4YCQA 2UVFA 2NSPA 4XOPA 1OFDA 2W7ZA 1WMRA 4OPWA 1BN8A 1O8MA 4XQFA 1DBOA 1HF2A 3GQAA 4XOTA 4C2LA 1H80A 4XLAA 2QX3A 4OJOA 4XONA 1RMGA 3B8YA 4OZZA 1TYVA 2VFOA 3H09A 1JTAA 1OFLA 4Z06A 3SYJA 1KCDA 1O8KA 1XG2A 3JX8A 4YEJA 4XMYA 4Z05A 1O8EA 2QXZA 3TH0A 2J8IA 4PMHA 1TYUA 4YZ0A 1KQ5A 2G0YA 1OGMX 2VBEA 4XLHA 4V02C 1KCCA 1K4ZA 1OFMA 2O6WA 3ZSCA 1EE6A 3VMVA 3UW0A 2NT9A 2VBKA 4NK8A
chains in the Genus database with same CATH topology
5C1EA 4HWVA 3EQOA 1DBGA 4XLCA 1RWRA 4I84A 4XKWA 2O0WA 2NTQA 2O1DA 4OJPA 1CZFA 2VJJA 3VSUA 1O88A 4OJ6A 4W8QA 1PE9A 4YELA 4XR6A 4W8TA 3WWGA 2NTBA 4YZAA 3GQ9A 3FY3A 4MR0A 1X0CA 3ZPPA 4AVZA 2PYGA 1GQ8A 2VBMA 4Z03A 1IDJA 1OGOX 4EW9A 1IB4A 5AMVA 4U49A 2NZMA 1VBLA 2O04A 2O17A 2NTPA 1JRGA 2BSPA 4MXNA 4XNFA 2UVEA 3VMWA 2PECA 4XLEA 1O8GA 3SUCA 4XORA 2Z8GA 1O8IA 4URRA 1KTWA 1O8LA 4W8SA 4OZYA 1PLUA 1O8JA 2VJIA 3VSVA 1K5CA 4YZXA 3VSTA 4OJ5A 2INUA 3B4NA 2IQ7A 2NSTA 3B90A 1O8DA 2X6WA 5C1CA 1QJVA 4YZQA 4XN3A 1PXZA 4XM3A 2EWEA 3T9GA 4U4BA 3GQ8A 1OOCA 4XLFA 1BHEA 2O0VA 2X85A 2QY1A 2X6XA 3EQNA 2X6YA 4NK6A 4W8RA 1IDKA 1QCXA 3GQ7A 3LMWA 1O8HA 2ODLA 3KRGA 3JURA 3GRHA 4XL9A 1HG8A 1AIRA 2NT6A 4OJLA 1IA5A 2X3HA 1NHCA 1O8FA 1RU4A 2PYHA 2INVA 4XKVA 4XN0A 2UVFA 2NSPA 4XOPA 1WMRA 1BN8A 1O8MA 4XQFA 1DBOA 3GQAA 4XOTA 4C2LA 1H80A 4XLAA 2QX3A 4OJOA 4XONA 1RMGA 3B8YA 4OZZA 4Z06A 1JTAA 1OFLA 1KCDA 1O8KA 1XG2A 4YEJA 4Z05A 4XMYA 1O8EA 2QXZA 4PMHA 4YZ0A 1OGMX 2VBEA 4XLHA 1KCCA 1OFMA 3ZSCA 1EE6A 3VMVA 3UW0A 2NT9A 2VBKA 4NK8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5C1E A;  4HWV A;  3EQO A;  1DBG A;  4XLC A;  1RWR A;  4I84 A;  4XKW A;  2O0W A;  2NTQ A;  2O1D A;  4OJP A;  1CZF A;  2VJJ A;  3VSU A;  1O88 A;  4OJ6 A;  4W8Q A;  1PE9 A;  4YEL A;  4XR6 A;  4W8T A;  3WWG A;  2NTB A;  4YZA A;  3GQ9 A;  3FY3 A;  4MR0 A;  1X0C A;  3ZPP A;  4AVZ A;  2PYG A;  1GQ8 A;  2VBM A;  4Z03 A;  1IDJ A;  1OGO X;  4EW9 A;  1IB4 A;  5AMV A;  4U49 A;  2NZM A;  1VBL A;  2O04 A;  2O17 A;  2NTP A;  1JRG A;  2BSP A;  4MXN A;  4XNF A;  2UVE A;  3VMW A;  2PEC A;  4XLE A;  1O8G A;  3SUC A;  4XOR A;  2Z8G A;  1O8I A;  4URR A;  1KTW A;  1O8L A;  4W8S A;  4OZY A;  1PLU A;  1O8J A;  2VJI A;  3VSV A;  1K5C A;  4YZX A;  3VST A;  4OJ5 A;  2INU A;  3B4N A;  2IQ7 A;  2NST A;  3B90 A;  1O8D A;  2X6W A;  5C1C A;  1QJV A;  4YZQ A;  4XN3 A;  1PXZ A;  4XM3 A;  2EWE A;  3T9G A;  4U4B A;  3GQ8 A;  1OOC A;  4XLF A;  1BHE A;  2O0V A;  2X85 A;  2QY1 A;  2X6X A;  3EQN A;  2X6Y A;  4NK6 A;  4W8R A;  1IDK A;  1QCX A;  3GQ7 A;  3LMW A;  1O8H A;  2ODL A;  3KRG A;  3JUR A;  3GRH A;  4XL9 A;  1HG8 A;  1AIR A;  2NT6 A;  4OJL A;  1IA5 A;  2X3H A;  1NHC A;  1O8F A;  1RU4 A;  2PYH A;  2INV A;  4XKV A;  4XN0 A;  2UVF A;  2NSP A;  4XOP A;  1WMR A;  1BN8 A;  1O8M A;  4XQF A;  1DBO A;  3GQA A;  4XOT A;  4C2L A;  1H80 A;  4XLA A;  2QX3 A;  4OJO A;  4XON A;  1RMG A;  3B8Y A;  4OZZ A;  4Z06 A;  1JTA A;  1OFL A;  1KCD A;  1O8K A;  1XG2 A;  4YEJ A;  4Z05 A;  4XMY A;  1O8E A;  2QXZ A;  4PMH A;  4YZ0 A;  1OGM X;  2VBE A;  4XLH A;  1KCC A;  1OFM A;  3ZSC A;  1EE6 A;  3VMV A;  3UW0 A;  2NT9 A;  2VBK A;  4NK8 A; 
#chains in the Genus database with same CATH topology
 5C1E A;  4HWV A;  3EQO A;  2XC1 A;  1TYW A;  2IOU G;  1DBG A;  4XLC A;  1RWR A;  1QQ1 A;  1EZG A;  4I84 A;  4XKW A;  3AK5 A;  2BX6 A;  2O0W A;  2VFQ A;  3P4G A;  2NTQ A;  1QRB A;  2O1D A;  4OJP A;  1CZF A;  2VJJ A;  3VSU A;  3NB2 A;  1LM1 A;  1O88 A;  4OJ6 A;  4W8Q A;  2QYU A;  2XT2 A;  4YDT A;  1PE9 A;  4YEL A;  3N90 A;  2VFM A;  2YUH A;  4W8T A;  4XR6 A;  2NTB A;  4YZA A;  3WWG A;  3GQ9 A;  3ML3 A;  3FY3 A;  3PSS A;  4MR0 A;  1X0C A;  3ZPP A;  2QZA A;  4AVZ A;  2PYG A;  4YFO A;  2BM7 A;  1GQ8 A;  2VBM A;  4Z03 A;  1IDJ A;  1OGO X;  4EW9 A;  1IB4 A;  1QA3 A;  5AMV A;  4U49 A;  1VBL A;  2O04 A;  2NZM A;  2O17 A;  2NTP A;  2XTY A;  1DAB A;  3LJY A;  4JRA C;  1JRG A;  2BSP A;  3SZE A;  4MXN A;  4XNF A;  2UVE A;  3VMW A;  2PEC A;  2F3L A;  4XLE A;  3PET A;  1O8G A;  1TSP A;  3SUC A;  5DNS A;  4XOR A;  2Z8G A;  1O8I A;  4URR A;  1WXR A;  1K8F A;  2BM5 A;  1LLZ A;  1KTW A;  1O8L A;  4OM9 A;  4W8S A;  2XTX A;  4OZY A;  3SQV A;  1PLU A;  1O8J A;  2VJI A;  3VSV A;  1K5C A;  2VFP A;  4YZX A;  3VST A;  3N6Z A;  2INU A;  1TYX A;  4OJ5 A;  5JMC B;  3B4N A;  2IQ7 A;  2NST A;  3B90 A;  1O8D A;  1L1I A;  2X6W A;  3NAW A;  5C1C A;  2B0R A;  1QJV A;  4YZQ A;  4XN3 A;  1PXZ A;  4XM3 A;  2EWE A;  2XT4 A;  2XTW A;  3SY2 A;  3T9G A;  1QRC A;  4U4B A;  3GQ8 A;  1OOC A;  4XLF A;  4YC5 A;  1BHE A;  2O0V A;  2X85 A;  1CLW A;  2QY1 A;  4KH3 A;  1QA2 A;  2X6X A;  3EQN A;  2X6Y A;  4NK6 A;  1QA1 A;  4W8R A;  3RIQ A;  1IDK A;  1QCX A;  1EA0 A;  3GQ7 A;  2VFN A;  2J8K A;  3LMW A;  1O8H A;  2ODL A;  4YEI A;  3KRG A;  3PSZ A;  3JUR A;  3GRH A;  4XL9 A;  3LYC A;  5JLV C;  2BM6 A;  1HG8 A;  1AIR A;  2NT6 A;  4OJL A;  1IA5 A;  2X3H A;  1NHC A;  3DU1 X;  2BM4 A;  3BH7 B;  1O8F A;  1RU4 A;  1LLW A;  2PYH A;  2INV A;  4XKV A;  4XN0 A;  1OFE A;  3BH6 B;  2V5I A;  4YCQ A;  2UVF A;  2NSP A;  4XOP A;  1OFD A;  2W7Z A;  1WMR A;  4OPW A;  1BN8 A;  1O8M A;  4XQF A;  1DBO A;  1HF2 A;  3GQA A;  4XOT A;  4C2L A;  1H80 A;  4XLA A;  2QX3 A;  4OJO A;  4XON A;  1RMG A;  3B8Y A;  4OZZ A;  1TYV A;  2VFO A;  3H09 A;  1JTA A;  1OFL A;  4Z06 A;  3SYJ A;  1KCD A;  1O8K A;  1XG2 A;  3JX8 A;  4YEJ A;  4XMY A;  4Z05 A;  1O8E A;  2QXZ A;  3TH0 A;  2J8I A;  4PMH A;  1TYU A;  4YZ0 A;  1KQ5 A;  2G0Y A;  1OGM X;  2VBE A;  4XLH A;  4V02 C;  1KCC A;  1K4Z A;  1OFM A;  2O6W A;  3ZSC A;  1EE6 A;  3VMV A;  3UW0 A;  2NT9 A;  2VBK A;  4NK8 A; 
#chains in the Genus database with same CATH homology
 5C1E A;  4HWV A;  3EQO A;  1DBG A;  4XLC A;  1RWR A;  4I84 A;  4XKW A;  2O0W A;  2NTQ A;  2O1D A;  4OJP A;  1CZF A;  2VJJ A;  3VSU A;  1O88 A;  4OJ6 A;  4W8Q A;  1PE9 A;  4YEL A;  4XR6 A;  4W8T A;  3WWG A;  2NTB A;  4YZA A;  3GQ9 A;  3FY3 A;  4MR0 A;  1X0C A;  3ZPP A;  4AVZ A;  2PYG A;  1GQ8 A;  2VBM A;  4Z03 A;  1IDJ A;  1OGO X;  4EW9 A;  1IB4 A;  5AMV A;  4U49 A;  2NZM A;  1VBL A;  2O04 A;  2O17 A;  2NTP A;  1JRG A;  2BSP A;  4MXN A;  4XNF A;  2UVE A;  3VMW A;  2PEC A;  4XLE A;  1O8G A;  3SUC A;  4XOR A;  2Z8G A;  1O8I A;  4URR A;  1KTW A;  1O8L A;  4W8S A;  4OZY A;  1PLU A;  1O8J A;  2VJI A;  3VSV A;  1K5C A;  4YZX A;  3VST A;  4OJ5 A;  2INU A;  3B4N A;  2IQ7 A;  2NST A;  3B90 A;  1O8D A;  2X6W A;  5C1C A;  1QJV A;  4YZQ A;  4XN3 A;  1PXZ A;  4XM3 A;  2EWE A;  3T9G A;  4U4B A;  3GQ8 A;  1OOC A;  4XLF A;  1BHE A;  2O0V A;  2X85 A;  2QY1 A;  2X6X A;  3EQN A;  2X6Y A;  4NK6 A;  4W8R A;  1IDK A;  1QCX A;  3GQ7 A;  3LMW A;  1O8H A;  2ODL A;  3KRG A;  3JUR A;  3GRH A;  4XL9 A;  1HG8 A;  1AIR A;  2NT6 A;  4OJL A;  1IA5 A;  2X3H A;  1NHC A;  1O8F A;  1RU4 A;  2PYH A;  2INV A;  4XKV A;  4XN0 A;  2UVF A;  2NSP A;  4XOP A;  1WMR A;  1BN8 A;  1O8M A;  4XQF A;  1DBO A;  3GQA A;  4XOT A;  4C2L A;  1H80 A;  4XLA A;  2QX3 A;  4OJO A;  4XON A;  1RMG A;  3B8Y A;  4OZZ A;  4Z06 A;  1JTA A;  1OFL A;  1KCD A;  1O8K A;  1XG2 A;  4YEJ A;  4Z05 A;  4XMY A;  1O8E A;  2QXZ A;  4PMH A;  4YZ0 A;  1OGM X;  2VBE A;  4XLH A;  1KCC A;  1OFM A;  3ZSC A;  1EE6 A;  3VMV A;  3UW0 A;  2NT9 A;  2VBK A;  4NK8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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