3PETA

Crystal structure of a putative adhesin (bf0245) from bacteroides fragilis nctc 9343 at 2.07 a resolution
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
218
structure length
218
Chain Sequence
GIQPSKKLITRDYKVKEFNKIDAGTVGNIYYTQSTDGKTDLQIYGPDNIVALIQVAVKDNTLFLSIDKSKKVRNFKKMKITITSPTLNGISFKGVGDVHIENGLTTDNLDIESKGVGNVDIQSLTCQKLNVQSMGVGDVKLEGTAQIAALHSKGVGNIEAGNLRANAVEASSQGVGDITCNATESIDAAVRGVGSIKYKGSPTIKSLSKKGVGTIKNI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a putative adhesin (BF0245) from Bacteroides fragilis NCTC 9343 at 2.07 A resolution
rcsb
molecule tags Cell adhesion
source organism Bacteroides fragilis nctc 9343
molecule keywords Putative adhesin
total genus 76
structure length 218
sequence length 218
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10988 DUF2807 Putative auto-transporter adhesin, head GIN domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.120 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 3petA00
3LYCA 4OPWA 3LJYA 3PETA 3JX8A
chains in the Genus database with same CATH superfamily
1IB4A 3TH0A 4W8TA 1QA1A 3LMWA 3BH7B 4C2LA 1O8KA 4OJLA 3SUCA 3NB2A 4YZXA 2Z8GA 2QZAA 3T9GA 2J8KA 1OFLA 2NSPA 1CZFA 1TYUA 2XTYA 1KCDA 2XC1A 3ZSCA 4MR0A 3SQVA 1O8IA 2O04A 1QQ1A 4MXNA 2EWEA 1QA3A 2INUA 3B8YA 3SY2A 4YEIA 1O8HA 4OPWA 2BSPA 2NSTA 3KRGA 2VFPA 4HWVA 4KH3A 1WXRA 2XTWA 3PETA 2VBKA 2INVA 1AIRA 4XR6A 5AMVA 3GQ8A 2O0WA 1X0CA 3GQ9A 4AVZA 4OJOA 1GQ8A 1QRBA 4XM3A 4YCQA 4NK8A 2YUHA 2F3LA 3H09A 4W8RA 1JTAA 2NTPA 2IQ7A 1LLZA 3AK5A 5JMCB 1CLWA 4Z05A 2X3HA 1NHCA 4YDTA 1QJVA 2VJIA 4EW9A 3ML3A 1HF2A 1QRCA 1PLUA 2QYUA 1HG8A 2BM4A 4XONA 1O8JA 4U4BA 1O88A 1RMGA 2O1DA 4YELA 3FY3A 1RWRA 1PXZA 4XORA 2O17A 2VFOA 3LYCA 2XTXA 2NZMA 2PYHA 3ZPPA 5JLVC 3GQAA 1OOCA 4YZ0A 3RIQA 2NT9A 2XT4A 1KTWA 4XOTA 3VSVA 2XT2A 4XLHA 4XLFA 5DNSA 3B4NA 1O8DA 3VMWA 4XOPA 2IOUG 2QXZA 4PMHA 2X85A 1LM1A 1RU4A 2PECA 1OGMX 4I84A 1L1IA 4XMYA 1K4ZA 3LJYA 4Z03A 2UVFA 4W8SA 4Z06A 1QA2A 3EQNA 4YC5A 1O8EA 4W8QA 4XKVA 2O0VA 4JRAC 1TSPA 1IDKA 4YFOA 1EZGA 2G0YA 2VBEA 3JURA 4YZAA 1O8MA 3VMVA 2QY1A 4XLAA 3JX8A 3B90A 2BM6A 3BH6B 1EE6A 1KQ5A 2NTBA 1BHEA 1DBOA 1XG2A 4U49A 4XKWA 2X6WA 3N6ZA 3EQOA 4NK6A 4OJ6A 1KCCA 2NTQA 1K5CA 2J8IA 2PYGA 4YEJA 5C1EA 1OGOX 2VFNA 4XL9A 3PSSA 2X6YA 3NAWA 4XLEA 4YZQA 4XLCA 3UW0A 4XQFA 4OZZA 1OFDA 2W7ZA 1IDJA 1IA5A 2VJJA 3SYJA 1TYVA 4OZYA 2ODLA 2V5IA 2X6XA 1EA0A 3SZEA 4OM9A 2BM5A 2O6WA 2VBMA 2VFQA 4XN0A 2NT6A 3N90A 1OFMA 1WMRA 1K8FA 4URRA 3GRHA 1LLWA 1QCXA 1H80A 2QX3A 4V02C 3GQ7A 1VBLA 1OFEA 2B0RA 1JRGA 1BN8A 2BX6A 2VFMA 4OJPA 4XNFA 1O8FA 3DU1X 1TYWA 3PSZA 3P4GA 1TYXA 1DBGA 3VSUA 5C1CA 3WWGA 1DABA 4OJ5A 1PE9A 2UVEA 4XN3A 1O8LA 3VSTA 1O8GA 2BM7A
chains in the Genus database with same CATH topology
3TH0A 3AK5A 2VFNA 5JMCB 1CLWA 1QA1A 3BH7B 1K4ZA 3LJYA 2W7ZA 4OJLA 3SYJA 1QA2A 3ML3A 1TYVA 2V5IA 1HF2A 1QRCA 3SZEA 2BM4A 4JRAC 1TYUA 4OM9A 2BM5A 1TSPA 2XC1A 2G0YA 2VFQA 1QQ1A 3N90A 1QA3A 1K8FA 3JX8A 2J8IA 2VFOA 2BM6A 3LYCA 4OPWA 4KH3A 5JLVC 2VFPA 3BH6B 4V02C 1WXRA 3PETA 2B0RA 3RIQA 1KQ5A 2BX6A 2VFMA 4OJPA 1TYWA 3P4GA 1TYXA 1DABA 4OJOA 1QRBA 4OJ5A 3N6ZA 4OJ6A 2YUHA 2F3LA 3H09A 2IOUG 2BM7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LYC A;  4OPW A;  3LJY A;  3PET A;  3JX8 A; 
#chains in the Genus database with same CATH topology
 1IB4 A;  3TH0 A;  4W8T A;  1QA1 A;  3LMW A;  3BH7 B;  4C2L A;  1O8K A;  4OJL A;  3SUC A;  3NB2 A;  4YZX A;  2Z8G A;  2QZA A;  3T9G A;  2J8K A;  1OFL A;  2NSP A;  1CZF A;  1TYU A;  2XTY A;  1KCD A;  2XC1 A;  3ZSC A;  4MR0 A;  3SQV A;  1O8I A;  2O04 A;  1QQ1 A;  4MXN A;  2EWE A;  1QA3 A;  2INU A;  3B8Y A;  3SY2 A;  4YEI A;  1O8H A;  4OPW A;  2BSP A;  2NST A;  3KRG A;  2VFP A;  4HWV A;  4KH3 A;  1WXR A;  2XTW A;  3PET A;  2VBK A;  2INV A;  1AIR A;  4XR6 A;  5AMV A;  3GQ8 A;  2O0W A;  1X0C A;  3GQ9 A;  4AVZ A;  4OJO A;  1GQ8 A;  1QRB A;  4XM3 A;  4YCQ A;  4NK8 A;  2YUH A;  2F3L A;  3H09 A;  4W8R A;  1JTA A;  2NTP A;  2IQ7 A;  1LLZ A;  3AK5 A;  5JMC B;  1CLW A;  4Z05 A;  2X3H A;  1NHC A;  4YDT A;  1QJV A;  2VJI A;  4EW9 A;  3ML3 A;  1HF2 A;  1QRC A;  1PLU A;  2QYU A;  1HG8 A;  2BM4 A;  4XON A;  1O8J A;  4U4B A;  1O88 A;  1RMG A;  2O1D A;  4YEL A;  3FY3 A;  1RWR A;  1PXZ A;  4XOR A;  2O17 A;  2VFO A;  3LYC A;  2XTX A;  2NZM A;  2PYH A;  3ZPP A;  5JLV C;  3GQA A;  1OOC A;  4YZ0 A;  3RIQ A;  2NT9 A;  2XT4 A;  1KTW A;  4XOT A;  3VSV A;  2XT2 A;  4XLH A;  4XLF A;  5DNS A;  3B4N A;  1O8D A;  3VMW A;  4XOP A;  2IOU G;  2QXZ A;  4PMH A;  2X85 A;  1LM1 A;  1RU4 A;  2PEC A;  1OGM X;  4I84 A;  1L1I A;  4XMY A;  1K4Z A;  3LJY A;  4Z03 A;  2UVF A;  4W8S A;  4Z06 A;  1QA2 A;  3EQN A;  4YC5 A;  1O8E A;  4W8Q A;  4XKV A;  2O0V A;  4JRA C;  1TSP A;  1IDK A;  4YFO A;  1EZG A;  2G0Y A;  2VBE A;  3JUR A;  4YZA A;  1O8M A;  3VMV A;  2QY1 A;  4XLA A;  3JX8 A;  3B90 A;  2BM6 A;  3BH6 B;  1EE6 A;  1KQ5 A;  2NTB A;  1BHE A;  1DBO A;  1XG2 A;  4U49 A;  4XKW A;  2X6W A;  3N6Z A;  3EQO A;  4NK6 A;  4OJ6 A;  1KCC A;  2NTQ A;  1K5C A;  2J8I A;  2PYG A;  4YEJ A;  5C1E A;  1OGO X;  2VFN A;  4XL9 A;  3PSS A;  2X6Y A;  3NAW A;  4XLE A;  4YZQ A;  4XLC A;  3UW0 A;  4XQF A;  4OZZ A;  1OFD A;  2W7Z A;  1IDJ A;  1IA5 A;  2VJJ A;  3SYJ A;  1TYV A;  4OZY A;  2ODL A;  2V5I A;  2X6X A;  1EA0 A;  3SZE A;  4OM9 A;  2BM5 A;  2O6W A;  2VBM A;  2VFQ A;  4XN0 A;  2NT6 A;  3N90 A;  1OFM A;  1WMR A;  1K8F A;  4URR A;  3GRH A;  1LLW A;  1QCX A;  1H80 A;  2QX3 A;  4V02 C;  3GQ7 A;  1VBL A;  1OFE A;  2B0R A;  1JRG A;  1BN8 A;  2BX6 A;  2VFM A;  4OJP A;  4XNF A;  1O8F A;  3DU1 X;  1TYW A;  3PSZ A;  3P4G A;  1TYX A;  1DBG A;  3VSU A;  5C1C A;  3WWG A;  1DAB A;  4OJ5 A;  1PE9 A;  2UVE A;  4XN3 A;  1O8L A;  3VST A;  1O8G A;  2BM7 A; 
#chains in the Genus database with same CATH homology
 3TH0 A;  3AK5 A;  2VFN A;  5JMC B;  1CLW A;  1QA1 A;  3BH7 B;  1K4Z A;  3LJY A;  2W7Z A;  4OJL A;  3SYJ A;  1QA2 A;  3ML3 A;  1TYV A;  2V5I A;  1HF2 A;  1QRC A;  3SZE A;  2BM4 A;  4JRA C;  1TYU A;  4OM9 A;  2BM5 A;  1TSP A;  2XC1 A;  2G0Y A;  2VFQ A;  1QQ1 A;  3N90 A;  1QA3 A;  1K8F A;  3JX8 A;  2J8I A;  2VFO A;  2BM6 A;  3LYC A;  4OPW A;  4KH3 A;  5JLV C;  2VFP A;  3BH6 B;  4V02 C;  1WXR A;  3PET A;  2B0R A;  3RIQ A;  1KQ5 A;  2BX6 A;  2VFM A;  4OJP A;  1TYW A;  3P4G A;  1TYX A;  1DAB A;  4OJO A;  1QRB A;  4OJ5 A;  3N6Z A;  4OJ6 A;  2YUH A;  2F3L A;  3H09 A;  2IOU G;  2BM7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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