1QA1A

Tailspike protein, mutant v331g
Total Genus 176
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
176
sequence length
554
structure length
542
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSGSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein/receptor
molecule keywords TAILSPIKE PROTEIN
publication title Mutations improving the folding of phage P22 tailspike protein affect its receptor binding activity.
pubmed doi rcsb
source organism Enterobacteria phage p22
total genus 176
structure length 542
sequence length 554
ec nomenclature
pdb deposition date 1999-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1qa1A00
2V5IA 2VFMA 1TYWA 4KH3A 3H09A 3SYJA 1QQ1A 2VFOA 1TSPA 1QA2A 3TH0A 2XC1A 1CLWA 1QRCA 1TYUA 2VFQA 1QA3A 1QA1A 3RIQA 1QRBA 1WXRA 1DABA 3AK5A 2VFNA 1TYVA 1TYXA 4OM9A 3SZEA 2IOUG 3ML3A 2VFPA
chains in the Genus database with same CATH superfamily
4XLAA 1GQ8A 4OJLA 1QCXA 1QJVA 4OZZA 4U4BA 3LMWA 5C1CA 3H09A 2VBKA 2W7ZA 2VFOA 1RMGA 4W8SA 1BN8A 1PXZA 1OFDA 2QXZA 1O8JA 2NSPA 3N90A 2O1DA 4YZXA 1QA2A 2F3LA 4YZ0A 1LLZA 1NHCA 2XC1A 4OJOA 2BM7A 1EZGA 1QRCA 4MXNA 1TYUA 1O8DA 4MR0A 1RU4A 4OJPA 2INUA 2BM4A 2NT9A 2UVFA 1RWRA 4AVZA 1QA3A 2VBMA 4Z06A 4W8RA 3DU1X 2VFNA 2BM6A 1TYVA 2X6WA 1K4ZA 3FY3A 4XM3A 4YELA 2PECA 1OFMA 3VMWA 1X0CA 3EQOA 4XOTA 2J8KA 4KH3A 4XQFA 1KCCA 4PMHA 1H80A 1KCDA 1JRGA 2J8IA 1EA0A 4XMYA 2Z8GA 4XLCA 1TSPA 1DBOA 2ODLA 4NK6A 3B90A 2BSPA 2PYGA 1PLUA 3N6ZA 3TH0A 3ZSCA 1AIRA 1K5CA 4XN3A 1IDJA 3VSVA 3KRGA 1L1IA 3VSUA 2G0YA 3ZPPA 1K8FA 1JTAA 3PSSA 4YDTA 4OJ5A 2QY1A 1WXRA 2VJIA 1WMRA 2QYUA 3SY2A 5JMCB 3LYCA 1QA1A 3SUCA 1PE9A 2X3HA 3EQNA 2V5IA 3JX8A 2VFMA 4EW9A 2O0VA 4YZAA 3BH7B 3GRHA 2NZMA 1XG2A 1IDKA 4I84A 2BX6A 4W8TA 1O8FA 3BH6B 3P4GA 4XLFA 3LJYA 1O8MA 1OGOX 1HF2A 2INVA 4OJ6A 4YEJA 5DNSA 2O6WA 4URRA 3T9GA 3PSZA 2PYHA 2NTQA 2X6YA 1CLWA 1O8GA 2BM5A 4XORA 3B4NA 4XLHA 2QZAA 1OOCA 2VJJA 3NB2A 2VFQA 1OFLA 2UVEA 4XKVA 4XL9A 4YC5A 4YZQA 2XTYA 4OPWA 5C1EA 1DBGA 1DABA 1IA5A 3AK5A 1HG8A 2NT6A 4XLEA 1KQ5A 3GQ9A 4YCQA 4OM9A 1OGMX 2IOUG 2IQ7A 2XT4A 4JRAC 2B0RA 1O8HA 1LM1A 2NTPA 2QX3A 1TYWA 4XN0A 1O8LA 4YEIA 2X6XA 4NK8A 3SYJA 2NTBA 1BHEA 1QQ1A 4Z03A 1O8KA 3B8YA 3VSTA 3NAWA 1CZFA 2O04A 4U49A 2O17A 4C2LA 4V02C 4YFOA 3WWGA 4XNFA 4HWVA 4XR6A 3VMVA 4XONA 3JURA 3SQVA 2X85A 4W8QA 1VBLA 3GQ8A 5AMVA 2VBEA 1EE6A 1O8IA 3PETA 1LLWA 4Z05A 2EWEA 1KTWA 2YUHA 1O8EA 1QRBA 2NSTA 3RIQA 2O0WA 2XT2A 5JLVC 2XTWA 3GQAA 1OFEA 1IB4A 1TYXA 4XOPA 3GQ7A 3SZEA 4XKWA 2XTXA 3ML3A 3UW0A 1O88A 4OZYA 2VFPA
chains in the Genus database with same CATH topology
2V5IA 3JX8A 2VFMA 1TYWA 4OJLA 4KH3A 3BH7B 3H09A 3SYJA 1QQ1A 2J8IA 2VFOA 2W7ZA 2BX6A 1TSPA 3BH6B 3P4GA 3LJYA 3N90A 1HF2A 4OJ6A 1QA2A 2F3LA 3N6ZA 4V02C 3TH0A 2XC1A 1CLWA 2BM7A 2BM5A 4OJOA 1QRCA 1TYUA 2G0YA 4OJPA 1K8FA 2BM4A 2VFQA 3PETA 1QA3A 1QA1A 2YUHA 4OJ5A 4OPWA 1QRBA 3RIQA 5JLVC 1DABA 1WXRA 3AK5A 2VFNA 2BM6A 1TYVA 1TYXA 1KQ5A 2VFPA 4OM9A 5JMCB 3LYCA 3SZEA 1K4ZA 2IOUG 3ML3A 4JRAC 2B0RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2V5I A;  2VFM A;  1TYW A;  4KH3 A;  3H09 A;  3SYJ A;  1QQ1 A;  2VFO A;  1TSP A;  1QA2 A;  3TH0 A;  2XC1 A;  1CLW A;  1QRC A;  1TYU A;  2VFQ A;  1QA3 A;  1QA1 A;  3RIQ A;  1QRB A;  1WXR A;  1DAB A;  3AK5 A;  2VFN A;  1TYV A;  1TYX A;  4OM9 A;  3SZE A;  2IOU G;  3ML3 A;  2VFP A; 
#chains in the Genus database with same CATH topology
 4XLA A;  1GQ8 A;  4OJL A;  1QCX A;  1QJV A;  4OZZ A;  4U4B A;  3LMW A;  5C1C A;  3H09 A;  2VBK A;  2W7Z A;  2VFO A;  1RMG A;  4W8S A;  1BN8 A;  1PXZ A;  1OFD A;  2QXZ A;  1O8J A;  2NSP A;  3N90 A;  2O1D A;  4YZX A;  1QA2 A;  2F3L A;  4YZ0 A;  1LLZ A;  1NHC A;  2XC1 A;  4OJO A;  2BM7 A;  1EZG A;  1QRC A;  4MXN A;  1TYU A;  1O8D A;  4MR0 A;  1RU4 A;  4OJP A;  2INU A;  2BM4 A;  2NT9 A;  2UVF A;  1RWR A;  4AVZ A;  1QA3 A;  2VBM A;  4Z06 A;  4W8R A;  3DU1 X;  2VFN A;  2BM6 A;  1TYV A;  2X6W A;  1K4Z A;  3FY3 A;  4XM3 A;  4YEL A;  2PEC A;  1OFM A;  3VMW A;  1X0C A;  3EQO A;  4XOT A;  2J8K A;  4KH3 A;  4XQF A;  1KCC A;  4PMH A;  1H80 A;  1KCD A;  1JRG A;  2J8I A;  1EA0 A;  4XMY A;  2Z8G A;  4XLC A;  1TSP A;  1DBO A;  2ODL A;  4NK6 A;  3B90 A;  2BSP A;  2PYG A;  1PLU A;  3N6Z A;  3TH0 A;  3ZSC A;  1AIR A;  1K5C A;  4XN3 A;  1IDJ A;  3VSV A;  3KRG A;  1L1I A;  3VSU A;  2G0Y A;  3ZPP A;  1K8F A;  1JTA A;  3PSS A;  4YDT A;  4OJ5 A;  2QY1 A;  1WXR A;  2VJI A;  1WMR A;  2QYU A;  3SY2 A;  5JMC B;  3LYC A;  1QA1 A;  3SUC A;  1PE9 A;  2X3H A;  3EQN A;  2V5I A;  3JX8 A;  2VFM A;  4EW9 A;  2O0V A;  4YZA A;  3BH7 B;  3GRH A;  2NZM A;  1XG2 A;  1IDK A;  4I84 A;  2BX6 A;  4W8T A;  1O8F A;  3BH6 B;  3P4G A;  4XLF A;  3LJY A;  1O8M A;  1OGO X;  1HF2 A;  2INV A;  4OJ6 A;  4YEJ A;  5DNS A;  2O6W A;  4URR A;  3T9G A;  3PSZ A;  2PYH A;  2NTQ A;  2X6Y A;  1CLW A;  1O8G A;  2BM5 A;  4XOR A;  3B4N A;  4XLH A;  2QZA A;  1OOC A;  2VJJ A;  3NB2 A;  2VFQ A;  1OFL A;  2UVE A;  4XKV A;  4XL9 A;  4YC5 A;  4YZQ A;  2XTY A;  4OPW A;  5C1E A;  1DBG A;  1DAB A;  1IA5 A;  3AK5 A;  1HG8 A;  2NT6 A;  4XLE A;  1KQ5 A;  3GQ9 A;  4YCQ A;  4OM9 A;  1OGM X;  2IOU G;  2IQ7 A;  2XT4 A;  4JRA C;  2B0R A;  1O8H A;  1LM1 A;  2NTP A;  2QX3 A;  1TYW A;  4XN0 A;  1O8L A;  4YEI A;  2X6X A;  4NK8 A;  3SYJ A;  2NTB A;  1BHE A;  1QQ1 A;  4Z03 A;  1O8K A;  3B8Y A;  3VST A;  3NAW A;  1CZF A;  2O04 A;  4U49 A;  2O17 A;  4C2L A;  4V02 C;  4YFO A;  3WWG A;  4XNF A;  4HWV A;  4XR6 A;  3VMV A;  4XON A;  3JUR A;  3SQV A;  2X85 A;  4W8Q A;  1VBL A;  3GQ8 A;  5AMV A;  2VBE A;  1EE6 A;  1O8I A;  3PET A;  1LLW A;  4Z05 A;  2EWE A;  1KTW A;  2YUH A;  1O8E A;  1QRB A;  2NST A;  3RIQ A;  2O0W A;  2XT2 A;  5JLV C;  2XTW A;  3GQA A;  1OFE A;  1IB4 A;  1TYX A;  4XOP A;  3GQ7 A;  3SZE A;  4XKW A;  2XTX A;  3ML3 A;  3UW0 A;  1O88 A;  4OZY A;  2VFP A; 
#chains in the Genus database with same CATH homology
 2V5I A;  3JX8 A;  2VFM A;  1TYW A;  4OJL A;  4KH3 A;  3BH7 B;  3H09 A;  3SYJ A;  1QQ1 A;  2J8I A;  2VFO A;  2W7Z A;  2BX6 A;  1TSP A;  3BH6 B;  3P4G A;  3LJY A;  3N90 A;  1HF2 A;  4OJ6 A;  1QA2 A;  2F3L A;  3N6Z A;  4V02 C;  3TH0 A;  2XC1 A;  1CLW A;  2BM7 A;  2BM5 A;  4OJO A;  1QRC A;  1TYU A;  2G0Y A;  4OJP A;  1K8F A;  2BM4 A;  2VFQ A;  3PET A;  1QA3 A;  1QA1 A;  2YUH A;  4OJ5 A;  4OPW A;  1QRB A;  3RIQ A;  5JLV C;  1DAB A;  1WXR A;  3AK5 A;  2VFN A;  2BM6 A;  1TYV A;  1TYX A;  1KQ5 A;  2VFP A;  4OM9 A;  5JMC B;  3LYC A;  3SZE A;  1K4Z A;  2IOU G;  3ML3 A;  4JRA C;  2B0R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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