1QA1A

Tailspike protein, mutant v331g
Total Genus 176
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
176
sequence length
554
structure length
542
Chain Sequence
b'YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSGSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords TAILSPIKE PROTEIN
publication title Mutations improving the folding of phage P22 tailspike protein affect its receptor binding activity.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral protein/receptor
total genus 176
structure length 542
sequence length 554
ec nomenclature
pdb deposition date 1999-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1qa1A00
4KH3A 1QRCA 2XC1A 1QA2A 1TSPA 3RIQA 1QA3A 3SYJA 1TYWA 1QQ1A 2VFMA 1QA1A 1QRBA 3AK5A 1TYVA 1TYXA 2IOUG 2VFNA 2VFOA 2V5IA 2VFQA 1WXRA 3TH0A 2VFPA 3ML3A 3SZEA 1DABA 1TYUA 3H09A 1CLWA 4OM9A
chains in the Genus database with same CATH superfamily
4I84A 1KTWA 2X6WA 1O8MA 4OPWA 3GRHA 2YUHA 3T9GA 4YDTA 4W8SA 3SYJA 4OJ6A 5C1CA 4OJPA 1TYWA 1RWRA 2NT9A 1LLWA 1QA1A 1QRBA 1DBOA 1PE9A 4XN3A 3WWGA 4C2LA 1EZGA 1WMRA 5C1EA 2X6XA 2NSPA 1O8HA 4PMHA 4XQFA 2X3HA 2NTPA 3JX8A 1OFLA 1O8DA 2QXZA 4YCQA 1QCXA 1O8FA 2VFOA 4XKWA 4XLCA 2J8KA 4MXNA 4NK6A 1EE6A 2X6YA 4XKVA 4XR6A 1O8GA 4OJ5A 3SY2A 1L1IA 1JTAA 2INVA 4XOTA 2NZMA 4HWVA 4XLAA 2O04A 2XT4A 1OFMA 1O8EA 1OFDA 2VBKA 1OGOX 2UVEA 3VSVA 2NT6A 2O17A 1HG8A 3GQAA 4XOPA 1K4ZA 2B0RA 3GQ8A 3GQ9A 4U49A 1CZFA 2G0YA 1IA5A 2O0WA 5JMCB 1KCCA 2W7ZA 2XTXA 2O1DA 2QZAA 1H80A 1RMGA 1OOCA 3PSZA 2BM5A 2IQ7A 2X85A 4YELA 3FY3A 1X0CA 1OFEA 4YEJA 3P4GA 2IOUG 3N6ZA 2J8IA 2VFNA 3NB2A 4YC5A 1EA0A 3JURA 2XT2A 1WXRA 3B4NA 3VMWA 1LM1A 4W8RA 3NAWA 4XLFA 1DABA 4URRA 1KCDA 1TYUA 5AMVA 3LMWA 2NTBA 4OM9A 4EW9A 2XTWA 1QRCA 3BH6B 1JRGA 1TSPA 2BM7A 3PSSA 3RIQA 1O8LA 3B8YA 1IB4A 2ODLA 1NHCA 3VSTA 4Z03A 1OGMX 4YZXA 4MR0A 3PETA 3LYCA 2PYHA 4YFOA 3UW0A 2VBMA 1AIRA 4YZQA 1TYVA 4Z05A 3BH7B 2UVFA 4W8QA 3DU1X 1BN8A 2Z8GA 3ZPPA 1GQ8A 2BSPA 4U4BA 4XLHA 4XM3A 3TH0A 3EQNA 4OJOA 1PXZA 4XL9A 3ML3A 3SZEA 3LJYA 4XLEA 2NSTA 2O6WA 3SUCA 1LLZA 3KRGA 5DNSA 4JRAC 4V02C 1K5CA 2XTYA 4AVZA 4KH3A 1VBLA 1XG2A 2EWEA 1O88A 2NTQA 2INUA 2XC1A 3GQ7A 1IDKA 1RU4A 4XN0A 1QA2A 1KQ5A 3SQVA 1QA3A 3EQOA 3ZSCA 1QQ1A 2F3LA 2QY1A 2VFMA 2PYGA 2VJIA 2QX3A 4W8TA 2QYUA 3VMVA 3B90A 1QJVA 2O0VA 3AK5A 2VBEA 1BHEA 5JLVC 2BX6A 1TYXA 4XMYA 2VJJA 4OZYA 2BM6A 1HF2A 4YZ0A 2V5IA 2VFQA 1DBGA 3VSUA 4XNFA 4NK8A 4XONA 2VFPA 1O8JA 4OZZA 1O8IA 4YZAA 2BM4A 2PECA 1PLUA 4XORA 4YEIA 4Z06A 3N90A 4OJLA 3H09A 1K8FA 1O8KA 1CLWA 1IDJA
chains in the Genus database with same CATH topology
4KH3A 1QRCA 3BH6B 2XC1A 4OPWA 2YUHA 1QA2A 1KQ5A 1TSPA 2BM7A 3RIQA 3SYJA 1QA3A 4OJ6A 2B0RA 1K4ZA 4OJPA 1TYWA 1QQ1A 2G0YA 2F3LA 5JMCB 2VFMA 1QA1A 1QRBA 2W7ZA 3AK5A 3PETA 3LYCA 5JLVC 2BX6A 1TYVA 1TYXA 2BM5A 3BH7B 3JX8A 2IOUG 2BM6A 3N6ZA 3P4GA 1HF2A 2J8IA 2VFNA 2VFOA 2V5IA 4V02C 2VFQA 1WXRA 3TH0A 4OJOA 2VFPA 4OJ5A 3ML3A 3SZEA 3LJYA 1DABA 2BM4A 1TYUA 3N90A 4OJLA 3H09A 1K8FA 4JRAC 1CLWA 4OM9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KH3 A;  1QRC A;  2XC1 A;  1QA2 A;  1TSP A;  3RIQ A;  1QA3 A;  3SYJ A;  1TYW A;  1QQ1 A;  2VFM A;  1QA1 A;  1QRB A;  3AK5 A;  1TYV A;  1TYX A;  2IOU G;  2VFN A;  2VFO A;  2V5I A;  2VFQ A;  1WXR A;  3TH0 A;  2VFP A;  3ML3 A;  3SZE A;  1DAB A;  1TYU A;  3H09 A;  1CLW A;  4OM9 A; 
#chains in the Genus database with same CATH topology
 4I84 A;  1KTW A;  2X6W A;  1O8M A;  4OPW A;  3GRH A;  2YUH A;  3T9G A;  4YDT A;  4W8S A;  3SYJ A;  4OJ6 A;  5C1C A;  4OJP A;  1TYW A;  1RWR A;  2NT9 A;  1LLW A;  1QA1 A;  1QRB A;  1DBO A;  1PE9 A;  4XN3 A;  3WWG A;  4C2L A;  1EZG A;  1WMR A;  5C1E A;  2X6X A;  2NSP A;  1O8H A;  4PMH A;  4XQF A;  2X3H A;  2NTP A;  3JX8 A;  1OFL A;  1O8D A;  2QXZ A;  4YCQ A;  1QCX A;  1O8F A;  2VFO A;  4XKW A;  4XLC A;  2J8K A;  4MXN A;  4NK6 A;  1EE6 A;  2X6Y A;  4XKV A;  4XR6 A;  1O8G A;  4OJ5 A;  3SY2 A;  1L1I A;  1JTA A;  2INV A;  4XOT A;  2NZM A;  4HWV A;  4XLA A;  2O04 A;  2XT4 A;  1OFM A;  1O8E A;  1OFD A;  2VBK A;  1OGO X;  2UVE A;  3VSV A;  2NT6 A;  2O17 A;  1HG8 A;  3GQA A;  4XOP A;  1K4Z A;  2B0R A;  3GQ8 A;  3GQ9 A;  4U49 A;  1CZF A;  2G0Y A;  1IA5 A;  2O0W A;  5JMC B;  1KCC A;  2W7Z A;  2XTX A;  2O1D A;  2QZA A;  1H80 A;  1RMG A;  1OOC A;  3PSZ A;  2BM5 A;  2IQ7 A;  2X85 A;  4YEL A;  3FY3 A;  1X0C A;  1OFE A;  4YEJ A;  3P4G A;  2IOU G;  3N6Z A;  2J8I A;  2VFN A;  3NB2 A;  4YC5 A;  1EA0 A;  3JUR A;  2XT2 A;  1WXR A;  3B4N A;  3VMW A;  1LM1 A;  4W8R A;  3NAW A;  4XLF A;  1DAB A;  4URR A;  1KCD A;  1TYU A;  5AMV A;  3LMW A;  2NTB A;  4OM9 A;  4EW9 A;  2XTW A;  1QRC A;  3BH6 B;  1JRG A;  1TSP A;  2BM7 A;  3PSS A;  3RIQ A;  1O8L A;  3B8Y A;  1IB4 A;  2ODL A;  1NHC A;  3VST A;  4Z03 A;  1OGM X;  4YZX A;  4MR0 A;  3PET A;  3LYC A;  2PYH A;  4YFO A;  3UW0 A;  2VBM A;  1AIR A;  4YZQ A;  1TYV A;  4Z05 A;  3BH7 B;  2UVF A;  4W8Q A;  3DU1 X;  1BN8 A;  2Z8G A;  3ZPP A;  1GQ8 A;  2BSP A;  4U4B A;  4XLH A;  4XM3 A;  3TH0 A;  3EQN A;  4OJO A;  1PXZ A;  4XL9 A;  3ML3 A;  3SZE A;  3LJY A;  4XLE A;  2NST A;  2O6W A;  3SUC A;  1LLZ A;  3KRG A;  5DNS A;  4JRA C;  4V02 C;  1K5C A;  2XTY A;  4AVZ A;  4KH3 A;  1VBL A;  1XG2 A;  2EWE A;  1O88 A;  2NTQ A;  2INU A;  2XC1 A;  3GQ7 A;  1IDK A;  1RU4 A;  4XN0 A;  1QA2 A;  1KQ5 A;  3SQV A;  1QA3 A;  3EQO A;  3ZSC A;  1QQ1 A;  2F3L A;  2QY1 A;  2VFM A;  2PYG A;  2VJI A;  2QX3 A;  4W8T A;  2QYU A;  3VMV A;  3B90 A;  1QJV A;  2O0V A;  3AK5 A;  2VBE A;  1BHE A;  5JLV C;  2BX6 A;  1TYX A;  4XMY A;  2VJJ A;  4OZY A;  2BM6 A;  1HF2 A;  4YZ0 A;  2V5I A;  2VFQ A;  1DBG A;  3VSU A;  4XNF A;  4NK8 A;  4XON A;  2VFP A;  1O8J A;  4OZZ A;  1O8I A;  4YZA A;  2BM4 A;  2PEC A;  1PLU A;  4XOR A;  4YEI A;  4Z06 A;  3N90 A;  4OJL A;  3H09 A;  1K8F A;  1O8K A;  1CLW A;  1IDJ A; 
#chains in the Genus database with same CATH homology
 4KH3 A;  1QRC A;  3BH6 B;  2XC1 A;  4OPW A;  2YUH A;  1QA2 A;  1KQ5 A;  1TSP A;  2BM7 A;  3RIQ A;  3SYJ A;  1QA3 A;  4OJ6 A;  2B0R A;  1K4Z A;  4OJP A;  1TYW A;  1QQ1 A;  2G0Y A;  2F3L A;  5JMC B;  2VFM A;  1QA1 A;  1QRB A;  2W7Z A;  3AK5 A;  3PET A;  3LYC A;  5JLV C;  2BX6 A;  1TYV A;  1TYX A;  2BM5 A;  3BH7 B;  3JX8 A;  2IOU G;  2BM6 A;  3N6Z A;  3P4G A;  1HF2 A;  2J8I A;  2VFN A;  2VFO A;  2V5I A;  4V02 C;  2VFQ A;  1WXR A;  3TH0 A;  4OJO A;  2VFP A;  4OJ5 A;  3ML3 A;  3SZE A;  3LJY A;  1DAB A;  2BM4 A;  1TYU A;  3N90 A;  4OJL A;  3H09 A;  1K8F A;  4JRA C;  1CLW A;  4OM9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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