1QA1A

Tailspike protein, mutant v331g
Total Genus 176
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
176
sequence length
554
structure length
542
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSGSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords TAILSPIKE PROTEIN
publication title Mutations improving the folding of phage P22 tailspike protein affect its receptor binding activity.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral protein/receptor
total genus 176
structure length 542
sequence length 554
ec nomenclature
pdb deposition date 1999-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1qa1A00
2IOUG 1QA2A 2XC1A 3TH0A 1TYWA 1QRCA 4OM9A 1TSPA 2VFNA 1TYVA 1CLWA 1TYUA 2VFQA 2VFPA 1DABA 2V5IA 3H09A 4KH3A 1WXRA 1TYXA 3SYJA 2VFMA 1QQ1A 3SZEA 3ML3A 1QA1A 1QA3A 3AK5A 1QRBA 3RIQA 2VFOA
chains in the Genus database with same CATH superfamily
3WWGA 2X6XA 5C1CA 4U4BA 3TH0A 1OGMX 1K4ZA 1X0CA 2XT2A 2IQ7A 1TYWA 4YEJA 2O0WA 4OM9A 4YZXA 3N6ZA 1GQ8A 3PETA 3NAWA 1TSPA 2G0YA 4OPWA 4XLHA 1JRGA 3VSTA 1O8IA 3B8YA 2VBKA 2VFNA 1TYVA 4Z05A 1OOCA 4XOTA 2X85A 1HF2A 1IDKA 1KQ5A 2BSPA 2VFPA 1RMGA 1XG2A 3H09A 4KH3A 4XLCA 4YFOA 5C1EA 1VBLA 3B90A 1TYXA 3ZSCA 1O8GA 2NT6A 2VFMA 4XORA 3SZEA 1OFMA 4XOPA 1QA3A 1RWRA 4XLAA 5DNSA 1EE6A 1DBGA 2BX6A 4OJ6A 4XONA 3ZPPA 1PXZA 3GQ7A 4YDTA 4C2LA 2QX3A 3VSVA 1L1IA 2IOUG 4OZZA 4XQFA 2XTYA 2VBMA 2XC1A 4W8TA 1WMRA 1AIRA 2NTPA 3RIQA 1QRCA 3VMVA 1O8DA 4YEIA 4XMYA 1OFLA 4XM3A 1IDJA 2O17A 3GQ8A 4MXNA 2NT9A 3N90A 1CZFA 1RU4A 2NTQA 2O04A 2ODLA 3LJYA 2QZAA 4NK8A 3KRGA 3NB2A 4XKWA 2INVA 2NSTA 3PSSA 2V5IA 3EQOA 1EA0A 4W8RA 2XTXA 1H80A 4XL9A 2QY1A 1O8FA 2PYGA 3JX8A 2O1DA 3ML3A 4NK6A 4JRAC 3BH7B 1BN8A 4YELA 3AK5A 4YZ0A 1NHCA 1JTAA 2QYUA 1BHEA 2J8KA 1O88A 3P4GA 2PYHA 1KTWA 2O6WA 1IA5A 3GQAA 1EZGA 2W7ZA 1O8MA 1O8HA 2XTWA 4OJOA 4AVZA 1O8KA 4OJ5A 3B4NA 1KCDA 3JURA 3EQNA 4XLFA 1PLUA 1KCCA 2PECA 2VJJA 3VSUA 4OZYA 1LM1A 2BM7A 1PE9A 2NZMA 4YCQA 3LMWA 1DBOA 2VFQA 1K5CA 2BM4A 4Z06A 1DABA 4XKVA 4YZQA 1WXRA 3T9GA 3SYJA 2O0VA 2VBEA 1QQ1A 4OJPA 2B0RA 1QCXA 2UVFA 2Z8GA 4XLEA 3SUCA 2NTBA 4EW9A 2NSPA 2X3HA 1HG8A 4URRA 4Z03A 1O8JA 5AMVA 3VMWA 1QA2A 2INUA 2QXZA 4W8QA 3GQ9A 2BM5A 4HWVA 5JMCB 2BM6A 4PMHA 4OJLA 1OFEA 2X6WA 3FY3A 4XNFA 1LLWA 1O8EA 1OGOX 4YC5A 4I84A 3BH6B 1CLWA 4MR0A 3SQVA 3UW0A 1QJVA 1TYUA 1K8FA 3GRHA 1O8LA 1OFDA 3DU1X 4XR6A 2UVEA 1IB4A 4U49A 4XN0A 2J8IA 3PSZA 2F3LA 1LLZA 4YZAA 5JLVC 1QA1A 4V02C 3SY2A 4XN3A 1QRBA 2X6YA 2YUHA 4W8SA 2VJIA 2XT4A 2EWEA 2VFOA 3LYCA
chains in the Genus database with same CATH topology
2IOUG 1QA2A 2W7ZA 2XC1A 4OJOA 3TH0A 1K4ZA 2BM5A 5JMCB 2BM6A 4OJ5A 1TYWA 1QRCA 4OJLA 4OM9A 3N6ZA 3PETA 1TSPA 2G0YA 4OPWA 3N90A 2BM7A 2VFNA 1TYVA 3BH6B 1CLWA 3LJYA 1TYUA 2VFQA 1HF2A 1KQ5A 2BM4A 1K8FA 2VFPA 1DABA 2V5IA 3H09A 4KH3A 1WXRA 2J8IA 1TYXA 3SYJA 2F3LA 2VFMA 1QQ1A 3JX8A 3ML3A 2B0RA 4OJPA 3SZEA 4JRAC 3BH7B 4V02C 5JLVC 1QA1A 1QA3A 1QRBA 3AK5A 2YUHA 4OJ6A 2BX6A 3RIQA 3P4GA 2VFOA 3LYCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IOU G;  1QA2 A;  2XC1 A;  3TH0 A;  1TYW A;  1QRC A;  4OM9 A;  1TSP A;  2VFN A;  1TYV A;  1CLW A;  1TYU A;  2VFQ A;  2VFP A;  1DAB A;  2V5I A;  3H09 A;  4KH3 A;  1WXR A;  1TYX A;  3SYJ A;  2VFM A;  1QQ1 A;  3SZE A;  3ML3 A;  1QA1 A;  1QA3 A;  3AK5 A;  1QRB A;  3RIQ A;  2VFO A; 
#chains in the Genus database with same CATH topology
 3WWG A;  2X6X A;  5C1C A;  4U4B A;  3TH0 A;  1OGM X;  1K4Z A;  1X0C A;  2XT2 A;  2IQ7 A;  1TYW A;  4YEJ A;  2O0W A;  4OM9 A;  4YZX A;  3N6Z A;  1GQ8 A;  3PET A;  3NAW A;  1TSP A;  2G0Y A;  4OPW A;  4XLH A;  1JRG A;  3VST A;  1O8I A;  3B8Y A;  2VBK A;  2VFN A;  1TYV A;  4Z05 A;  1OOC A;  4XOT A;  2X85 A;  1HF2 A;  1IDK A;  1KQ5 A;  2BSP A;  2VFP A;  1RMG A;  1XG2 A;  3H09 A;  4KH3 A;  4XLC A;  4YFO A;  5C1E A;  1VBL A;  3B90 A;  1TYX A;  3ZSC A;  1O8G A;  2NT6 A;  2VFM A;  4XOR A;  3SZE A;  1OFM A;  4XOP A;  1QA3 A;  1RWR A;  4XLA A;  5DNS A;  1EE6 A;  1DBG A;  2BX6 A;  4OJ6 A;  4XON A;  3ZPP A;  1PXZ A;  3GQ7 A;  4YDT A;  4C2L A;  2QX3 A;  3VSV A;  1L1I A;  2IOU G;  4OZZ A;  4XQF A;  2XTY A;  2VBM A;  2XC1 A;  4W8T A;  1WMR A;  1AIR A;  2NTP A;  3RIQ A;  1QRC A;  3VMV A;  1O8D A;  4YEI A;  4XMY A;  1OFL A;  4XM3 A;  1IDJ A;  2O17 A;  3GQ8 A;  4MXN A;  2NT9 A;  3N90 A;  1CZF A;  1RU4 A;  2NTQ A;  2O04 A;  2ODL A;  3LJY A;  2QZA A;  4NK8 A;  3KRG A;  3NB2 A;  4XKW A;  2INV A;  2NST A;  3PSS A;  2V5I A;  3EQO A;  1EA0 A;  4W8R A;  2XTX A;  1H80 A;  4XL9 A;  2QY1 A;  1O8F A;  2PYG A;  3JX8 A;  2O1D A;  3ML3 A;  4NK6 A;  4JRA C;  3BH7 B;  1BN8 A;  4YEL A;  3AK5 A;  4YZ0 A;  1NHC A;  1JTA A;  2QYU A;  1BHE A;  2J8K A;  1O88 A;  3P4G A;  2PYH A;  1KTW A;  2O6W A;  1IA5 A;  3GQA A;  1EZG A;  2W7Z A;  1O8M A;  1O8H A;  2XTW A;  4OJO A;  4AVZ A;  1O8K A;  4OJ5 A;  3B4N A;  1KCD A;  3JUR A;  3EQN A;  4XLF A;  1PLU A;  1KCC A;  2PEC A;  2VJJ A;  3VSU A;  4OZY A;  1LM1 A;  2BM7 A;  1PE9 A;  2NZM A;  4YCQ A;  3LMW A;  1DBO A;  2VFQ A;  1K5C A;  2BM4 A;  4Z06 A;  1DAB A;  4XKV A;  4YZQ A;  1WXR A;  3T9G A;  3SYJ A;  2O0V A;  2VBE A;  1QQ1 A;  4OJP A;  2B0R A;  1QCX A;  2UVF A;  2Z8G A;  4XLE A;  3SUC A;  2NTB A;  4EW9 A;  2NSP A;  2X3H A;  1HG8 A;  4URR A;  4Z03 A;  1O8J A;  5AMV A;  3VMW A;  1QA2 A;  2INU A;  2QXZ A;  4W8Q A;  3GQ9 A;  2BM5 A;  4HWV A;  5JMC B;  2BM6 A;  4PMH A;  4OJL A;  1OFE A;  2X6W A;  3FY3 A;  4XNF A;  1LLW A;  1O8E A;  1OGO X;  4YC5 A;  4I84 A;  3BH6 B;  1CLW A;  4MR0 A;  3SQV A;  3UW0 A;  1QJV A;  1TYU A;  1K8F A;  3GRH A;  1O8L A;  1OFD A;  3DU1 X;  4XR6 A;  2UVE A;  1IB4 A;  4U49 A;  4XN0 A;  2J8I A;  3PSZ A;  2F3L A;  1LLZ A;  4YZA A;  5JLV C;  1QA1 A;  4V02 C;  3SY2 A;  4XN3 A;  1QRB A;  2X6Y A;  2YUH A;  4W8S A;  2VJI A;  2XT4 A;  2EWE A;  2VFO A;  3LYC A; 
#chains in the Genus database with same CATH homology
 2IOU G;  1QA2 A;  2W7Z A;  2XC1 A;  4OJO A;  3TH0 A;  1K4Z A;  2BM5 A;  5JMC B;  2BM6 A;  4OJ5 A;  1TYW A;  1QRC A;  4OJL A;  4OM9 A;  3N6Z A;  3PET A;  1TSP A;  2G0Y A;  4OPW A;  3N90 A;  2BM7 A;  2VFN A;  1TYV A;  3BH6 B;  1CLW A;  3LJY A;  1TYU A;  2VFQ A;  1HF2 A;  1KQ5 A;  2BM4 A;  1K8F A;  2VFP A;  1DAB A;  2V5I A;  3H09 A;  4KH3 A;  1WXR A;  2J8I A;  1TYX A;  3SYJ A;  2F3L A;  2VFM A;  1QQ1 A;  3JX8 A;  3ML3 A;  2B0R A;  4OJP A;  3SZE A;  4JRA C;  3BH7 B;  4V02 C;  5JLV C;  1QA1 A;  1QA3 A;  1QRB A;  3AK5 A;  2YUH A;  4OJ6 A;  2BX6 A;  3RIQ A;  3P4G A;  2VFO A;  3LYC A; 
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similar chains in the pdb database (?% sequence similarity)

 
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