2XT2A

Structure of the pentapeptide repeat protein albg, a resistance factor for the topoisomerase poison albicidin.
Total Genus 78
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
197
structure length
197
Chain Sequence
AKTLESKDYCGESFVSEDRSGQSLESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQWPSVKMEGALSFERCILNDSLFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAVNYHIDIFHNDIKRARFSLPEAASLLNSLDIELS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Pentapeptide-Repeat Proteins that Act as Topoisomerase Poison Resistance Factors Have a Common Dimer Interface.
pubmed doi rcsb
molecule tags Cell cycle
source organism Xanthomonas albilineans
molecule keywords MCBG-LIKE PROTEIN
total genus 78
structure length 197
sequence length 197
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-10-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13599 Pentapeptide_4 Pentapeptide repeats (9 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.80 Mainly Beta 3 Solenoid Pectate Lyase C-like E3 ubiquitin-protein ligase SopA 2xt2A00
2QYUA 2XTWA 3NB2A 2J8KA 2O6WA 4YDTA 2QZAA 3DU1X 3PSZA 4YC5A 2XTYA 3PSSA 5DNSA 2XT4A 3SY2A 3SQVA 3NAWA 4YCQA 2XT2A 4YEIA 2XTXA 4YFOA
chains in the Genus database with same CATH superfamily
4XORA 1IA5A 1QA2A 4XLHA 2V5IA 1OGMX 2QZAA 3VSUA 4JRAC 2VFMA 2NSPA 1DBGA 4HWVA 4XONA 3GQ8A 1KCCA 2YUHA 4XOTA 4YC5A 3AK5A 1QQ1A 1H80A 1OFDA 1IB4A 1OFEA 5DNSA 2QY1A 4W8QA 1HG8A 4OJLA 4YZXA 1NHCA 3SY2A 1O8JA 1EZGA 1TYWA 1O8EA 2X85A 4MR0A 3SQVA 2O1DA 3SYJA 1O8FA 2BM6A 2BM4A 2VFPA 2VFQA 4XN3A 1RU4A 1K5CA 1LLZA 3EQNA 1QA1A 1O8HA 1BHEA 1TSPA 2VJJA 4OZYA 2XTWA 2QX3A 3NB2A 1AIRA 4OM9A 2NTPA 2NTQA 2VBMA 3GQ7A 4XLEA 4XLFA 1QJVA 3FY3A 3PETA 3SUCA 2Z8GA 3DU1X 3PSZA 3VSTA 4YZ0A 3ML3A 3ZSCA 1QCXA 2IOUG 2G0YA 1DBOA 1O8IA 2BX6A 3LJYA 5JMCB 1WXRA 1EA0A 1DABA 3H09A 3PSSA 2X6WA 4XQFA 1KQ5A 3VMVA 1QA3A 1OFLA 2X6YA 5JLVC 2NSTA 1IDKA 1O8GA 4C2LA 3EQOA 1QRBA 3B8YA 3VSVA 1X0CA 2VJIA 3TH0A 3VMWA 2W7ZA 3T9GA 2XT2A 4MXNA 1BN8A 2NT9A 3SZEA 1LM1A 2VBEA 2X6XA 2INVA 3B4NA 4XNFA 2ODLA 2PYGA 1JRGA 1O8KA 2O0WA 3LMWA 4XLCA 4XOPA 3ZPPA 2O6WA 4EW9A 3B90A 2B0RA 1IDJA 4Z05A 2EWEA 4OPWA 1QRCA 2UVFA 2VFOA 3P4GA 4AVZA 4U49A 1PE9A 3GRHA 4I84A 1EE6A 1OGOX 4YZAA 5C1EA 4Z06A 3N90A 1CLWA 4OZZA 1RWRA 1RMGA 2NZMA 2BSPA 3JX8A 2NT6A 1OOCA 2IQ7A 2PYHA 4YELA 4YCQA 4OJOA 2J8IA 4NK8A 4NK6A 3WWGA 4U4BA 4W8SA 2PECA 4W8RA 1XG2A 4YEIA 2O04A 2BM5A 1O88A 2QYUA 4YFOA 1O8MA 2O17A 2UVEA 1HF2A 2J8KA 3BH7B 4XL9A 4Z03A 1PXZA 4YDTA 1VBLA 1O8DA 2X3HA 4XKWA 4XMYA 5C1CA 5AMVA 2VFNA 1PLUA 3RIQA 4XR6A 1CZFA 4KH3A 3LYCA 4YZQA 2XC1A 1JTAA 1TYVA 3N6ZA 2XTYA 1K8FA 4V02C 1OFMA 3JURA 4OJPA 2XT4A 1KTWA 3BH6B 1L1IA 1TYUA 1GQ8A 1LLWA 1K4ZA 3GQ9A 2INUA 4OJ5A 4XLAA 1TYXA 1O8LA 1WMRA 3KRGA 3GQAA 4URRA 4W8TA 3UW0A 2VBKA 3NAWA 4XKVA 4XN0A 4XM3A 4PMHA 4YEJA 2F3LA 2QXZA 2BM7A 4OJ6A 2O0VA 2XTXA 1KCDA 2NTBA
chains in the Genus database with same CATH topology
2QYUA 2XTWA 3NB2A 2J8KA 2O6WA 4YDTA 2QZAA 3DU1X 3PSZA 4YC5A 2XTYA 3PSSA 5DNSA 2XT4A 3SY2A 3SQVA 3NAWA 4YCQA 2XT2A 4YEIA 2XTXA 4YFOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QYU A;  2XTW A;  3NB2 A;  2J8K A;  2O6W A;  4YDT A;  2QZA A;  3DU1 X;  3PSZ A;  4YC5 A;  2XTY A;  3PSS A;  5DNS A;  2XT4 A;  3SY2 A;  3SQV A;  3NAW A;  4YCQ A;  2XT2 A;  4YEI A;  2XTX A;  4YFO A; 
#chains in the Genus database with same CATH topology
 4XOR A;  1IA5 A;  1QA2 A;  4XLH A;  2V5I A;  1OGM X;  2QZA A;  3VSU A;  4JRA C;  2VFM A;  2NSP A;  1DBG A;  4HWV A;  4XON A;  3GQ8 A;  1KCC A;  2YUH A;  4XOT A;  4YC5 A;  3AK5 A;  1QQ1 A;  1H80 A;  1OFD A;  1IB4 A;  1OFE A;  5DNS A;  2QY1 A;  4W8Q A;  1HG8 A;  4OJL A;  4YZX A;  1NHC A;  3SY2 A;  1O8J A;  1EZG A;  1TYW A;  1O8E A;  2X85 A;  4MR0 A;  3SQV A;  2O1D A;  3SYJ A;  1O8F A;  2BM6 A;  2BM4 A;  2VFP A;  2VFQ A;  4XN3 A;  1RU4 A;  1K5C A;  1LLZ A;  3EQN A;  1QA1 A;  1O8H A;  1BHE A;  1TSP A;  2VJJ A;  4OZY A;  2XTW A;  2QX3 A;  3NB2 A;  1AIR A;  4OM9 A;  2NTP A;  2NTQ A;  2VBM A;  3GQ7 A;  4XLE A;  4XLF A;  1QJV A;  3FY3 A;  3PET A;  3SUC A;  2Z8G A;  3DU1 X;  3PSZ A;  3VST A;  4YZ0 A;  3ML3 A;  3ZSC A;  1QCX A;  2IOU G;  2G0Y A;  1DBO A;  1O8I A;  2BX6 A;  3LJY A;  5JMC B;  1WXR A;  1EA0 A;  1DAB A;  3H09 A;  3PSS A;  2X6W A;  4XQF A;  1KQ5 A;  3VMV A;  1QA3 A;  1OFL A;  2X6Y A;  5JLV C;  2NST A;  1IDK A;  1O8G A;  4C2L A;  3EQO A;  1QRB A;  3B8Y A;  3VSV A;  1X0C A;  2VJI A;  3TH0 A;  3VMW A;  2W7Z A;  3T9G A;  2XT2 A;  4MXN A;  1BN8 A;  2NT9 A;  3SZE A;  1LM1 A;  2VBE A;  2X6X A;  2INV A;  3B4N A;  4XNF A;  2ODL A;  2PYG A;  1JRG A;  1O8K A;  2O0W A;  3LMW A;  4XLC A;  4XOP A;  3ZPP A;  2O6W A;  4EW9 A;  3B90 A;  2B0R A;  1IDJ A;  4Z05 A;  2EWE A;  4OPW A;  1QRC A;  2UVF A;  2VFO A;  3P4G A;  4AVZ A;  4U49 A;  1PE9 A;  3GRH A;  4I84 A;  1EE6 A;  1OGO X;  4YZA A;  5C1E A;  4Z06 A;  3N90 A;  1CLW A;  4OZZ A;  1RWR A;  1RMG A;  2NZM A;  2BSP A;  3JX8 A;  2NT6 A;  1OOC A;  2IQ7 A;  2PYH A;  4YEL A;  4YCQ A;  4OJO A;  2J8I A;  4NK8 A;  4NK6 A;  3WWG A;  4U4B A;  4W8S A;  2PEC A;  4W8R A;  1XG2 A;  4YEI A;  2O04 A;  2BM5 A;  1O88 A;  2QYU A;  4YFO A;  1O8M A;  2O17 A;  2UVE A;  1HF2 A;  2J8K A;  3BH7 B;  4XL9 A;  4Z03 A;  1PXZ A;  4YDT A;  1VBL A;  1O8D A;  2X3H A;  4XKW A;  4XMY A;  5C1C A;  5AMV A;  2VFN A;  1PLU A;  3RIQ A;  4XR6 A;  1CZF A;  4KH3 A;  3LYC A;  4YZQ A;  2XC1 A;  1JTA A;  1TYV A;  3N6Z A;  2XTY A;  1K8F A;  4V02 C;  1OFM A;  3JUR A;  4OJP A;  2XT4 A;  1KTW A;  3BH6 B;  1L1I A;  1TYU A;  1GQ8 A;  1LLW A;  1K4Z A;  3GQ9 A;  2INU A;  4OJ5 A;  4XLA A;  1TYX A;  1O8L A;  1WMR A;  3KRG A;  3GQA A;  4URR A;  4W8T A;  3UW0 A;  2VBK A;  3NAW A;  4XKV A;  4XN0 A;  4XM3 A;  4PMH A;  4YEJ A;  2F3L A;  2QXZ A;  2BM7 A;  4OJ6 A;  2O0V A;  2XTX A;  1KCD A;  2NTB A; 
#chains in the Genus database with same CATH homology
 2QYU A;  2XTW A;  3NB2 A;  2J8K A;  2O6W A;  4YDT A;  2QZA A;  3DU1 X;  3PSZ A;  4YC5 A;  2XTY A;  3PSS A;  5DNS A;  2XT4 A;  3SY2 A;  3SQV A;  3NAW A;  4YCQ A;  2XT2 A;  4YEI A;  2XTX A;  4YFO A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...