2VFMA

Low temperature structure of p22 tailspike protein fragment (109-666)
Total Genus 201
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
201
sequence length
555
structure length
555
Chain Sequence
b'QYSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords BIFUNCTIONAL TAIL PROTEIN
publication title Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein
rcsb
source organism Enterobacteria phage p22
molecule tags Hydrolase
total genus 201
structure length 555
sequence length 555
ec nomenclature ec 3.2.1.-:
pdb deposition date 2007-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2vfmA00
2XC1A 1QQ1A 3TH0A 3H09A 2VFNA 1DABA 1QA1A 4OM9A 3RIQA 1QRCA 1WXRA 3AK5A 1TYUA 1QA2A 2VFMA 1CLWA 3SYJA 2VFPA 1TYVA 3SZEA 2V5IA 1QA3A 2VFOA 2VFQA 4KH3A 1TSPA 1TYXA 3ML3A 2IOUG 1TYWA 1QRBA
chains in the Genus database with same CATH superfamily
3JX8A 4YFOA 1O88A 1OFDA 1O8MA 5DNSA 4MR0A 4Z05A 1AIRA 2VBKA 1DABA 4YEIA 3N6ZA 4OPWA 2XTXA 2W7ZA 1DBGA 2NSTA 1O8IA 4YDTA 3RIQA 3SQVA 1WXRA 1TYUA 3GQ9A 2INVA 3BH7B 1HG8A 4XNFA 3VSVA 2XTYA 4Z03A 2O0VA 2VJIA 1IA5A 3SY2A 4XORA 1QA3A 2J8KA 3ZSCA 2PECA 2O04A 1PXZA 2YUHA 2BM5A 2X6YA 3DU1X 2X6XA 3ML3A 2IOUG 4I84A 5C1EA 3KRGA 4OJ5A 1QCXA 1VBLA 2O1DA 4U4BA 1OGMX 4XM3A 4XL9A 2QY1A 1RMGA 3BH6B 3GRHA 3VSTA 1GQ8A 1QRCA 2F3LA 2O0WA 1O8JA 4OJPA 4XLFA 4XONA 4AVZA 1K8FA 1QA2A 4OZZA 2QYUA 3NAWA 2INUA 3N90A 1IDKA 1O8FA 1O8DA 2VJJA 4OZYA 2NT9A 1JTAA 1DBOA 2O17A 4Z06A 5AMVA 1RWRA 4W8TA 2ODLA 2QXZA 2NT6A 4OJLA 3P4GA 1OGOX 2UVEA 4XOPA 1XG2A 4YCQA 1L1IA 4MXNA 1O8KA 4OJOA 4V02C 1TYWA 1QRBA 3VMVA 5C1CA 2BM7A 1PLUA 2XC1A 1QJVA 1QQ1A 1O8HA 1OFEA 2NTBA 2UVFA 3H09A 4JRAC 4W8QA 5JMCB 1NHCA 1X0CA 2X6WA 2QX3A 3EQNA 3UW0A 1QA1A 3FY3A 2XTWA 1K5CA 1PE9A 1LLZA 2B0RA 2XT4A 3JURA 2PYHA 1RU4A 1O8GA 5JLVC 1IB4A 3EQOA 3ZPPA 2BM4A 4XKVA 1IDJA 2BSPA 1KTWA 4YZAA 3NB2A 4URRA 2IQ7A 2BM6A 3GQ8A 2VFMA 2VBMA 1KQ5A 4U49A 3VMWA 4PMHA 3PSSA 1CLWA 1LM1A 2VBEA 1TYVA 3SZEA 3VSUA 2NTPA 1K4ZA 4YZ0A 3GQ7A 4YC5A 4W8RA 4YEJA 2VFOA 2NSPA 3SUCA 2VFQA 4NK6A 3LMWA 4XQFA 1O8LA 2G0YA 4OJ6A 2NTQA 1JRGA 4XN0A 2QZAA 2BX6A 4KH3A 2EWEA 2J8IA 2Z8GA 1BHEA 1KCDA 4XKWA 3PETA 3PSZA 3TH0A 1HF2A 2VFNA 1WMRA 4XLAA 3LJYA 3WWGA 1EZGA 4C2LA 1OFMA 1EA0A 4YZQA 3B4NA 4XLEA 4OM9A 3B8YA 3LYCA 3AK5A 1O8EA 1LLWA 4XLCA 3B90A 1KCCA 4XOTA 4W8SA 4YZXA 4XLHA 1OFLA 2O6WA 3SYJA 2VFPA 2V5IA 1CZFA 4XMYA 1H80A 2X85A 4EW9A 1BN8A 1EE6A 4XN3A 4XR6A 4YELA 4HWVA 4NK8A 2XT2A 1TSPA 2NZMA 1OOCA 3GQAA 1TYXA 2X3HA 3T9GA 2PYGA
chains in the Genus database with same CATH topology
2XC1A 1QQ1A 3JX8A 3H09A 1HF2A 2VFNA 3PETA 3TH0A 4JRAC 3LJYA 5JMCB 1DABA 4OJ5A 1QA1A 3N6ZA 5JLVC 2B0RA 4OPWA 4OM9A 2W7ZA 3BH6B 3RIQA 2BM4A 3LYCA 1QRCA 2F3LA 4OJPA 1WXRA 3AK5A 1K8FA 1TYUA 1QA2A 2BM6A 2VFMA 1KQ5A 3BH7B 1CLWA 3N90A 2J8IA 3SYJA 2VFPA 1TYVA 3SZEA 2V5IA 1K4ZA 1QA3A 2VFOA 2VFQA 4KH3A 2YUHA 4OJLA 2G0YA 3P4GA 4OJ6A 1TSPA 2BM5A 1TYXA 3ML3A 2IOUG 2BX6A 1TYWA 1QRBA 4OJOA 4V02C 2BM7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XC1 A;  1QQ1 A;  3TH0 A;  3H09 A;  2VFN A;  1DAB A;  1QA1 A;  4OM9 A;  3RIQ A;  1QRC A;  1WXR A;  3AK5 A;  1TYU A;  1QA2 A;  2VFM A;  1CLW A;  3SYJ A;  2VFP A;  1TYV A;  3SZE A;  2V5I A;  1QA3 A;  2VFO A;  2VFQ A;  4KH3 A;  1TSP A;  1TYX A;  3ML3 A;  2IOU G;  1TYW A;  1QRB A; 
#chains in the Genus database with same CATH topology
 3JX8 A;  4YFO A;  1O88 A;  1OFD A;  1O8M A;  5DNS A;  4MR0 A;  4Z05 A;  1AIR A;  2VBK A;  1DAB A;  4YEI A;  3N6Z A;  4OPW A;  2XTX A;  2W7Z A;  1DBG A;  2NST A;  1O8I A;  4YDT A;  3RIQ A;  3SQV A;  1WXR A;  1TYU A;  3GQ9 A;  2INV A;  3BH7 B;  1HG8 A;  4XNF A;  3VSV A;  2XTY A;  4Z03 A;  2O0V A;  2VJI A;  1IA5 A;  3SY2 A;  4XOR A;  1QA3 A;  2J8K A;  3ZSC A;  2PEC A;  2O04 A;  1PXZ A;  2YUH A;  2BM5 A;  2X6Y A;  3DU1 X;  2X6X A;  3ML3 A;  2IOU G;  4I84 A;  5C1E A;  3KRG A;  4OJ5 A;  1QCX A;  1VBL A;  2O1D A;  4U4B A;  1OGM X;  4XM3 A;  4XL9 A;  2QY1 A;  1RMG A;  3BH6 B;  3GRH A;  3VST A;  1GQ8 A;  1QRC A;  2F3L A;  2O0W A;  1O8J A;  4OJP A;  4XLF A;  4XON A;  4AVZ A;  1K8F A;  1QA2 A;  4OZZ A;  2QYU A;  3NAW A;  2INU A;  3N90 A;  1IDK A;  1O8F A;  1O8D A;  2VJJ A;  4OZY A;  2NT9 A;  1JTA A;  1DBO A;  2O17 A;  4Z06 A;  5AMV A;  1RWR A;  4W8T A;  2ODL A;  2QXZ A;  2NT6 A;  4OJL A;  3P4G A;  1OGO X;  2UVE A;  4XOP A;  1XG2 A;  4YCQ A;  1L1I A;  4MXN A;  1O8K A;  4OJO A;  4V02 C;  1TYW A;  1QRB A;  3VMV A;  5C1C A;  2BM7 A;  1PLU A;  2XC1 A;  1QJV A;  1QQ1 A;  1O8H A;  1OFE A;  2NTB A;  2UVF A;  3H09 A;  4JRA C;  4W8Q A;  5JMC B;  1NHC A;  1X0C A;  2X6W A;  2QX3 A;  3EQN A;  3UW0 A;  1QA1 A;  3FY3 A;  2XTW A;  1K5C A;  1PE9 A;  1LLZ A;  2B0R A;  2XT4 A;  3JUR A;  2PYH A;  1RU4 A;  1O8G A;  5JLV C;  1IB4 A;  3EQO A;  3ZPP A;  2BM4 A;  4XKV A;  1IDJ A;  2BSP A;  1KTW A;  4YZA A;  3NB2 A;  4URR A;  2IQ7 A;  2BM6 A;  3GQ8 A;  2VFM A;  2VBM A;  1KQ5 A;  4U49 A;  3VMW A;  4PMH A;  3PSS A;  1CLW A;  1LM1 A;  2VBE A;  1TYV A;  3SZE A;  3VSU A;  2NTP A;  1K4Z A;  4YZ0 A;  3GQ7 A;  4YC5 A;  4W8R A;  4YEJ A;  2VFO A;  2NSP A;  3SUC A;  2VFQ A;  4NK6 A;  3LMW A;  4XQF A;  1O8L A;  2G0Y A;  4OJ6 A;  2NTQ A;  1JRG A;  4XN0 A;  2QZA A;  2BX6 A;  4KH3 A;  2EWE A;  2J8I A;  2Z8G A;  1BHE A;  1KCD A;  4XKW A;  3PET A;  3PSZ A;  3TH0 A;  1HF2 A;  2VFN A;  1WMR A;  4XLA A;  3LJY A;  3WWG A;  1EZG A;  4C2L A;  1OFM A;  1EA0 A;  4YZQ A;  3B4N A;  4XLE A;  4OM9 A;  3B8Y A;  3LYC A;  3AK5 A;  1O8E A;  1LLW A;  4XLC A;  3B90 A;  1KCC A;  4XOT A;  4W8S A;  4YZX A;  4XLH A;  1OFL A;  2O6W A;  3SYJ A;  2VFP A;  2V5I A;  1CZF A;  4XMY A;  1H80 A;  2X85 A;  4EW9 A;  1BN8 A;  1EE6 A;  4XN3 A;  4XR6 A;  4YEL A;  4HWV A;  4NK8 A;  2XT2 A;  1TSP A;  2NZM A;  1OOC A;  3GQA A;  1TYX A;  2X3H A;  3T9G A;  2PYG A; 
#chains in the Genus database with same CATH homology
 2XC1 A;  1QQ1 A;  3JX8 A;  3H09 A;  1HF2 A;  2VFN A;  3PET A;  3TH0 A;  4JRA C;  3LJY A;  5JMC B;  1DAB A;  4OJ5 A;  1QA1 A;  3N6Z A;  5JLV C;  2B0R A;  4OPW A;  4OM9 A;  2W7Z A;  3BH6 B;  3RIQ A;  2BM4 A;  3LYC A;  1QRC A;  2F3L A;  4OJP A;  1WXR A;  3AK5 A;  1K8F A;  1TYU A;  1QA2 A;  2BM6 A;  2VFM A;  1KQ5 A;  3BH7 B;  1CLW A;  3N90 A;  2J8I A;  3SYJ A;  2VFP A;  1TYV A;  3SZE A;  2V5I A;  1K4Z A;  1QA3 A;  2VFO A;  2VFQ A;  4KH3 A;  2YUH A;  4OJL A;  2G0Y A;  3P4G A;  4OJ6 A;  1TSP A;  2BM5 A;  1TYX A;  3ML3 A;  2IOU G;  2BX6 A;  1TYW A;  1QRB A;  4OJO A;  4V02 C;  2BM7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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