2VFMA

Low temperature structure of p22 tailspike protein fragment (109-666)
Total Genus 201
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
201
sequence length
555
structure length
555
Chain Sequence
QYSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords BIFUNCTIONAL TAIL PROTEIN
publication title Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein
rcsb
source organism Enterobacteria phage p22
molecule tags Hydrolase
total genus 201
structure length 555
sequence length 555
ec nomenclature ec 3.2.1.-:
pdb deposition date 2007-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2vfmA00
3AK5A 1QRBA 1TYUA 1QQ1A 3ML3A 3SZEA 3TH0A 1DABA 3RIQA 3SYJA 4OM9A 2V5IA 1QA2A 2VFQA 2XC1A 4KH3A 1QRCA 2VFMA 1TYVA 2VFPA 1TSPA 2IOUG 1QA3A 2VFNA 1CLWA 1QA1A 1WXRA 2VFOA 3H09A 1TYWA 1TYXA
chains in the Genus database with same CATH superfamily
2QY1A 4XLEA 4AVZA 1OFEA 2O04A 4OZZA 2O6WA 1TYUA 1QQ1A 2BM7A 3NAWA 1DBGA 4C2LA 3GQAA 4OJPA 3FY3A 3SZEA 1BHEA 1LM1A 1OFDA 1KCDA 1IB4A 4XR6A 3LJYA 4OJ6A 1DBOA 4OJ5A 4XONA 3B4NA 2O17A 4XN3A 2VFMA 1TYVA 2BM4A 2QYUA 4HWVA 2VFNA 3LYCA 3PETA 4XOPA 4YEIA 3N90A 3WWGA 4YZ0A 1QA1A 5DNSA 1WXRA 1K8FA 1KCCA 2VBEA 3H09A 4I84A 2VJIA 4YZAA 3EQOA 2INVA 2IQ7A 2EWEA 2J8KA 4W8RA 1H80A 3GQ7A 1AIRA 2PYHA 2X3HA 1K4ZA 3NB2A 2XTXA 1X0CA 3ZSCA 2XT4A 3SQVA 3N6ZA 1HF2A 3BH7B 3P4GA 4OZYA 2NTBA 4XLCA 1QJVA 1O8JA 2V5IA 4W8QA 2QZAA 1QA2A 2XC1A 2QXZA 4NK6A 1QRCA 1O8EA 3VSTA 2UVEA 1L1IA 1IDJA 1O8MA 2IOUG 4YC5A 4YEJA 1O8HA 2NSTA 1O8KA 2X6YA 1BN8A 2O0WA 4NK8A 5JLVC 2BSPA 2BX6A 2INUA 4JRAC 2G0YA 3VMVA 1OGOX 1QCXA 3GQ8A 5C1CA 4OJOA 3PSSA 1TYWA 3UW0A 1JRGA 4U4BA 1O88A 3ZPPA 1LLWA 1RU4A 2O0VA 3LMWA 1EA0A 4URRA 1O8DA 1LLZA 1OFLA 2PECA 3BH6B 5JMCB 1XG2A 4YZQA 4XLAA 1OGMX 3VSUA 4XN0A 3SYJA 1PXZA 4XKVA 4XM3A 2Z8GA 3DU1X 3GRHA 4OM9A 2NTPA 3PSZA 3T9GA 4W8TA 2XTYA 1EE6A 1O8IA 1EZGA 1VBLA 2VFQA 1IDKA 4KH3A 1PLUA 2X6WA 4U49A 2VFPA 4Z06A 2W7ZA 2XT2A 2YUHA 4W8SA 1QA3A 2B0RA 3B8YA 3KRGA 3VSVA 4XLFA 1K5CA 4OJLA 4XOTA 1CZFA 1PE9A 2VFOA 3EQNA 4XNFA 3AK5A 4MR0A 4EW9A 2BM6A 1QRBA 2ODLA 3B90A 3ML3A 5C1EA 2X6XA 3VMWA 4YZXA 2O1DA 1HG8A 1GQ8A 1O8FA 2VBKA 2NT9A 4PMHA 4Z05A 4XKWA 3TH0A 1O8LA 4YFOA 4OPWA 3RIQA 1DABA 2F3LA 1KQ5A 3SY2A 2NT6A 1IA5A 3JX8A 2UVFA 1RWRA 4MXNA 4YDTA 1JTAA 2NTQA 2PYGA 4XORA 1KTWA 4XQFA 2QX3A 4Z03A 4V02C 2J8IA 4YELA 5AMVA 3GQ9A 2VBMA 1TSPA 1OOCA 1WMRA 3SUCA 4YCQA 2BM5A 2VJJA 2X85A 1NHCA 1OFMA 3JURA 4XLHA 4XMYA 4XL9A 2NZMA 1CLWA 1RMGA 1O8GA 2XTWA 2NSPA 1TYXA
chains in the Genus database with same CATH topology
3AK5A 2BM6A 1QRBA 1TYUA 1QQ1A 2BM7A 3ML3A 3SZEA 4OJPA 1K4ZA 3BH6B 5JMCB 3TH0A 4OPWA 3N6ZA 1HF2A 2F3LA 1KQ5A 3RIQA 3SYJA 1DABA 3JX8A 3BH7B 3P4GA 4OM9A 2V5IA 1QA2A 3LJYA 4OJ6A 2VFQA 4OJ5A 4V02C 2J8IA 2XC1A 4KH3A 1QRCA 2VFMA 1TYVA 2VFPA 1TSPA 2BM4A 2W7ZA 2YUHA 2IOUG 1QA3A 2BM5A 2VFNA 3LYCA 2B0RA 3PETA 5JLVC 3N90A 2BX6A 4OJLA 4JRAC 2G0YA 1CLWA 1QA1A 1WXRA 1K8FA 2VFOA 4OJOA 3H09A 1TYWA 1TYXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AK5 A;  1QRB A;  1TYU A;  1QQ1 A;  3ML3 A;  3SZE A;  3TH0 A;  1DAB A;  3RIQ A;  3SYJ A;  4OM9 A;  2V5I A;  1QA2 A;  2VFQ A;  2XC1 A;  4KH3 A;  1QRC A;  2VFM A;  1TYV A;  2VFP A;  1TSP A;  2IOU G;  1QA3 A;  2VFN A;  1CLW A;  1QA1 A;  1WXR A;  2VFO A;  3H09 A;  1TYW A;  1TYX A; 
#chains in the Genus database with same CATH topology
 2QY1 A;  4XLE A;  4AVZ A;  1OFE A;  2O04 A;  4OZZ A;  2O6W A;  1TYU A;  1QQ1 A;  2BM7 A;  3NAW A;  1DBG A;  4C2L A;  3GQA A;  4OJP A;  3FY3 A;  3SZE A;  1BHE A;  1LM1 A;  1OFD A;  1KCD A;  1IB4 A;  4XR6 A;  3LJY A;  4OJ6 A;  1DBO A;  4OJ5 A;  4XON A;  3B4N A;  2O17 A;  4XN3 A;  2VFM A;  1TYV A;  2BM4 A;  2QYU A;  4HWV A;  2VFN A;  3LYC A;  3PET A;  4XOP A;  4YEI A;  3N90 A;  3WWG A;  4YZ0 A;  1QA1 A;  5DNS A;  1WXR A;  1K8F A;  1KCC A;  2VBE A;  3H09 A;  4I84 A;  2VJI A;  4YZA A;  3EQO A;  2INV A;  2IQ7 A;  2EWE A;  2J8K A;  4W8R A;  1H80 A;  3GQ7 A;  1AIR A;  2PYH A;  2X3H A;  1K4Z A;  3NB2 A;  2XTX A;  1X0C A;  3ZSC A;  2XT4 A;  3SQV A;  3N6Z A;  1HF2 A;  3BH7 B;  3P4G A;  4OZY A;  2NTB A;  4XLC A;  1QJV A;  1O8J A;  2V5I A;  4W8Q A;  2QZA A;  1QA2 A;  2XC1 A;  2QXZ A;  4NK6 A;  1QRC A;  1O8E A;  3VST A;  2UVE A;  1L1I A;  1IDJ A;  1O8M A;  2IOU G;  4YC5 A;  4YEJ A;  1O8H A;  2NST A;  1O8K A;  2X6Y A;  1BN8 A;  2O0W A;  4NK8 A;  5JLV C;  2BSP A;  2BX6 A;  2INU A;  4JRA C;  2G0Y A;  3VMV A;  1OGO X;  1QCX A;  3GQ8 A;  5C1C A;  4OJO A;  3PSS A;  1TYW A;  3UW0 A;  1JRG A;  4U4B A;  1O88 A;  3ZPP A;  1LLW A;  1RU4 A;  2O0V A;  3LMW A;  1EA0 A;  4URR A;  1O8D A;  1LLZ A;  1OFL A;  2PEC A;  3BH6 B;  5JMC B;  1XG2 A;  4YZQ A;  4XLA A;  1OGM X;  3VSU A;  4XN0 A;  3SYJ A;  1PXZ A;  4XKV A;  4XM3 A;  2Z8G A;  3DU1 X;  3GRH A;  4OM9 A;  2NTP A;  3PSZ A;  3T9G A;  4W8T A;  2XTY A;  1EE6 A;  1O8I A;  1EZG A;  1VBL A;  2VFQ A;  1IDK A;  4KH3 A;  1PLU A;  2X6W A;  4U49 A;  2VFP A;  4Z06 A;  2W7Z A;  2XT2 A;  2YUH A;  4W8S A;  1QA3 A;  2B0R A;  3B8Y A;  3KRG A;  3VSV A;  4XLF A;  1K5C A;  4OJL A;  4XOT A;  1CZF A;  1PE9 A;  2VFO A;  3EQN A;  4XNF A;  3AK5 A;  4MR0 A;  4EW9 A;  2BM6 A;  1QRB A;  2ODL A;  3B90 A;  3ML3 A;  5C1E A;  2X6X A;  3VMW A;  4YZX A;  2O1D A;  1HG8 A;  1GQ8 A;  1O8F A;  2VBK A;  2NT9 A;  4PMH A;  4Z05 A;  4XKW A;  3TH0 A;  1O8L A;  4YFO A;  4OPW A;  3RIQ A;  1DAB A;  2F3L A;  1KQ5 A;  3SY2 A;  2NT6 A;  1IA5 A;  3JX8 A;  2UVF A;  1RWR A;  4MXN A;  4YDT A;  1JTA A;  2NTQ A;  2PYG A;  4XOR A;  1KTW A;  4XQF A;  2QX3 A;  4Z03 A;  4V02 C;  2J8I A;  4YEL A;  5AMV A;  3GQ9 A;  2VBM A;  1TSP A;  1OOC A;  1WMR A;  3SUC A;  4YCQ A;  2BM5 A;  2VJJ A;  2X85 A;  1NHC A;  1OFM A;  3JUR A;  4XLH A;  4XMY A;  4XL9 A;  2NZM A;  1CLW A;  1RMG A;  1O8G A;  2XTW A;  2NSP A;  1TYX A; 
#chains in the Genus database with same CATH homology
 3AK5 A;  2BM6 A;  1QRB A;  1TYU A;  1QQ1 A;  2BM7 A;  3ML3 A;  3SZE A;  4OJP A;  1K4Z A;  3BH6 B;  5JMC B;  3TH0 A;  4OPW A;  3N6Z A;  1HF2 A;  2F3L A;  1KQ5 A;  3RIQ A;  3SYJ A;  1DAB A;  3JX8 A;  3BH7 B;  3P4G A;  4OM9 A;  2V5I A;  1QA2 A;  3LJY A;  4OJ6 A;  2VFQ A;  4OJ5 A;  4V02 C;  2J8I A;  2XC1 A;  4KH3 A;  1QRC A;  2VFM A;  1TYV A;  2VFP A;  1TSP A;  2BM4 A;  2W7Z A;  2YUH A;  2IOU G;  1QA3 A;  2BM5 A;  2VFN A;  3LYC A;  2B0R A;  3PET A;  5JLV C;  3N90 A;  2BX6 A;  4OJL A;  4JRA C;  2G0Y A;  1CLW A;  1QA1 A;  1WXR A;  1K8F A;  2VFO A;  4OJO A;  3H09 A;  1TYW A;  1TYX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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