2VFMA

Low temperature structure of p22 tailspike protein fragment (109-666)
Total Genus 201
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
201
sequence length
555
structure length
555
Chain Sequence
QYSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords BIFUNCTIONAL TAIL PROTEIN
publication title Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein
rcsb
source organism Enterobacteria phage p22
molecule tags Hydrolase
total genus 201
structure length 555
sequence length 555
ec nomenclature ec 3.2.1.-:
pdb deposition date 2007-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2vfmA00
1CLWA 2VFMA 2VFQA 4OM9A 1WXRA 2VFOA 1DABA 1TYWA 2VFNA 1TYVA 2XC1A 3SYJA 3AK5A 2IOUG 1QA3A 3ML3A 1TSPA 4KH3A 1QA1A 1QA2A 1QQ1A 1TYXA 3SZEA 3TH0A 2V5IA 1QRBA 3RIQA 1QRCA 1TYUA 2VFPA 3H09A
chains in the Genus database with same CATH superfamily
1HF2A 1LLWA 1OFLA 3TH0A 4XONA 1EE6A 1JRGA 2BSPA 5DNSA 1DBGA 2XTWA 4MR0A 4V02C 2NTQA 3LYCA 2PECA 4OM9A 3GQ7A 2F3LA 2VFOA 4W8TA 2VFNA 1O8DA 3VSVA 3ZPPA 1DABA 4U49A 2BM4A 1OGMX 2X6YA 3KRGA 1CZFA 4OZZA 1O8MA 2NTBA 2X3HA 4XN3A 3BH6B 4XLHA 4KH3A 3UW0A 2NZMA 1QA1A 4I84A 2O0VA 4EW9A 1QQ1A 1O8EA 3LJYA 2BX6A 3N6ZA 2V5IA 2VBMA 4PMHA 4W8QA 1EZGA 1QRBA 1O8IA 2VJIA 4XOTA 3SQVA 4W8RA 4YCQA 2BM6A 2VFPA 1EA0A 3NAWA 4MXNA 3VMWA 1QJVA 2UVEA 4C2LA 3PSZA 1QCXA 4OJ6A 4HWVA 1L1IA 2O1DA 2XT2A 2YUHA 1IDKA 2PYHA 1RMGA 4OPWA 4OZYA 3VMVA 1KCDA 2IQ7A 4XLCA 4YDTA 3VSUA 2BM7A 4YEJA 3AK5A 1NHCA 2IOUG 4U4BA 2B0RA 4Z05A 3WWGA 2O17A 4Z03A 3NB2A 3ML3A 1DBOA 3ZSCA 4XORA 3FY3A 4YEIA 2QYUA 2X6XA 4URRA 3N90A 4Z06A 1QA2A 4JRAC 2O04A 4XOPA 2VJJA 4XLFA 1PE9A 4XR6A 4XNFA 5C1CA 3RIQA 3DU1X 4OJPA 3GQ9A 1TYUA 2VBEA 1KCCA 2G0YA 1LM1A 1LLZA 1AIRA 1OFDA 3GQ8A 1IB4A 3SZEA 1CLWA 1PLUA 2VBKA 1O8FA 2INVA 2VFQA 1BN8A 2J8KA 1O8GA 1WXRA 2XC1A 1TYVA 3P4GA 2O6WA 4YFOA 1XG2A 2X6WA 1IA5A 3JX8A 1VBLA 1O8HA 1X0CA 1K4ZA 1BHEA 1PXZA 1TSPA 2XTXA 3B90A 3EQOA 3PSSA 2Z8GA 2BM5A 4XQFA 2NT6A 4OJLA 5AMVA 1OFEA 1TYXA 2XT4A 3B8YA 3LMWA 4YC5A 1KTWA 4XKWA 4YZQA 2EWEA 1K8FA 2NTPA 1O8KA 2QZAA 1OOCA 3H09A 2PYGA 2UVFA 3BH7B 5C1EA 4XLEA 1O88A 1KQ5A 3GQAA 1RU4A 2VFMA 3B4NA 1RWRA 5JLVC 4XL9A 1OGOX 4XMYA 1K5CA 2QXZA 2X85A 4OJOA 1JTAA 1TYWA 4OJ5A 3SYJA 2O0WA 1GQ8A 1H80A 1HG8A 4NK6A 3PETA 3VSTA 5JMCB 3EQNA 1IDJA 2QX3A 3SUCA 1QA3A 2NT9A 1WMRA 4YZAA 4YZXA 1O8LA 2NSTA 2XTYA 4YZ0A 2W7ZA 4XKVA 4XM3A 2NSPA 3T9GA 2INUA 4NK8A 3JURA 2J8IA 4YELA 1O8JA 4W8SA 3GRHA 1QRCA 4AVZA 2QY1A 2ODLA 1OFMA 4XLAA 3SY2A 4XN0A
chains in the Genus database with same CATH topology
1HF2A 3BH7B 4OJ6A 2YUHA 4OPWA 1KQ5A 1CLWA 5JLVC 2VFMA 4V02C 2VFQA 3LYCA 1WXRA 4OM9A 4OJOA 2F3LA 2VFOA 1DABA 1TYWA 2BM7A 1TYVA 2VFNA 2XC1A 3P4GA 4OJ5A 2BM4A 2IOUG 3SYJA 2B0RA 5JMCB 3AK5A 3PETA 3JX8A 1QA3A 1K4ZA 1TSPA 3ML3A 3BH6B 2BM5A 4KH3A 1QA1A 1QA2A 3N90A 2W7ZA 4JRAC 4OJLA 1QQ1A 1TYXA 3LJYA 2BX6A 3N6ZA 2V5IA 3TH0A 3SZEA 2J8IA 1QRBA 3RIQA 4OJPA 1K8FA 1QRCA 2BM6A 1TYUA 2VFPA 3H09A 2G0YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CLW A;  2VFM A;  2VFQ A;  4OM9 A;  1WXR A;  2VFO A;  1DAB A;  1TYW A;  2VFN A;  1TYV A;  2XC1 A;  3SYJ A;  3AK5 A;  2IOU G;  1QA3 A;  3ML3 A;  1TSP A;  4KH3 A;  1QA1 A;  1QA2 A;  1QQ1 A;  1TYX A;  3SZE A;  3TH0 A;  2V5I A;  1QRB A;  3RIQ A;  1QRC A;  1TYU A;  2VFP A;  3H09 A; 
#chains in the Genus database with same CATH topology
 1HF2 A;  1LLW A;  1OFL A;  3TH0 A;  4XON A;  1EE6 A;  1JRG A;  2BSP A;  5DNS A;  1DBG A;  2XTW A;  4MR0 A;  4V02 C;  2NTQ A;  3LYC A;  2PEC A;  4OM9 A;  3GQ7 A;  2F3L A;  2VFO A;  4W8T A;  2VFN A;  1O8D A;  3VSV A;  3ZPP A;  1DAB A;  4U49 A;  2BM4 A;  1OGM X;  2X6Y A;  3KRG A;  1CZF A;  4OZZ A;  1O8M A;  2NTB A;  2X3H A;  4XN3 A;  3BH6 B;  4XLH A;  4KH3 A;  3UW0 A;  2NZM A;  1QA1 A;  4I84 A;  2O0V A;  4EW9 A;  1QQ1 A;  1O8E A;  3LJY A;  2BX6 A;  3N6Z A;  2V5I A;  2VBM A;  4PMH A;  4W8Q A;  1EZG A;  1QRB A;  1O8I A;  2VJI A;  4XOT A;  3SQV A;  4W8R A;  4YCQ A;  2BM6 A;  2VFP A;  1EA0 A;  3NAW A;  4MXN A;  3VMW A;  1QJV A;  2UVE A;  4C2L A;  3PSZ A;  1QCX A;  4OJ6 A;  4HWV A;  1L1I A;  2O1D A;  2XT2 A;  2YUH A;  1IDK A;  2PYH A;  1RMG A;  4OPW A;  4OZY A;  3VMV A;  1KCD A;  2IQ7 A;  4XLC A;  4YDT A;  3VSU A;  2BM7 A;  4YEJ A;  3AK5 A;  1NHC A;  2IOU G;  4U4B A;  2B0R A;  4Z05 A;  3WWG A;  2O17 A;  4Z03 A;  3NB2 A;  3ML3 A;  1DBO A;  3ZSC A;  4XOR A;  3FY3 A;  4YEI A;  2QYU A;  2X6X A;  4URR A;  3N90 A;  4Z06 A;  1QA2 A;  4JRA C;  2O04 A;  4XOP A;  2VJJ A;  4XLF A;  1PE9 A;  4XR6 A;  4XNF A;  5C1C A;  3RIQ A;  3DU1 X;  4OJP A;  3GQ9 A;  1TYU A;  2VBE A;  1KCC A;  2G0Y A;  1LM1 A;  1LLZ A;  1AIR A;  1OFD A;  3GQ8 A;  1IB4 A;  3SZE A;  1CLW A;  1PLU A;  2VBK A;  1O8F A;  2INV A;  2VFQ A;  1BN8 A;  2J8K A;  1O8G A;  1WXR A;  2XC1 A;  1TYV A;  3P4G A;  2O6W A;  4YFO A;  1XG2 A;  2X6W A;  1IA5 A;  3JX8 A;  1VBL A;  1O8H A;  1X0C A;  1K4Z A;  1BHE A;  1PXZ A;  1TSP A;  2XTX A;  3B90 A;  3EQO A;  3PSS A;  2Z8G A;  2BM5 A;  4XQF A;  2NT6 A;  4OJL A;  5AMV A;  1OFE A;  1TYX A;  2XT4 A;  3B8Y A;  3LMW A;  4YC5 A;  1KTW A;  4XKW A;  4YZQ A;  2EWE A;  1K8F A;  2NTP A;  1O8K A;  2QZA A;  1OOC A;  3H09 A;  2PYG A;  2UVF A;  3BH7 B;  5C1E A;  4XLE A;  1O88 A;  1KQ5 A;  3GQA A;  1RU4 A;  2VFM A;  3B4N A;  1RWR A;  5JLV C;  4XL9 A;  1OGO X;  4XMY A;  1K5C A;  2QXZ A;  2X85 A;  4OJO A;  1JTA A;  1TYW A;  4OJ5 A;  3SYJ A;  2O0W A;  1GQ8 A;  1H80 A;  1HG8 A;  4NK6 A;  3PET A;  3VST A;  5JMC B;  3EQN A;  1IDJ A;  2QX3 A;  3SUC A;  1QA3 A;  2NT9 A;  1WMR A;  4YZA A;  4YZX A;  1O8L A;  2NST A;  2XTY A;  4YZ0 A;  2W7Z A;  4XKV A;  4XM3 A;  2NSP A;  3T9G A;  2INU A;  4NK8 A;  3JUR A;  2J8I A;  4YEL A;  1O8J A;  4W8S A;  3GRH A;  1QRC A;  4AVZ A;  2QY1 A;  2ODL A;  1OFM A;  4XLA A;  3SY2 A;  4XN0 A; 
#chains in the Genus database with same CATH homology
 1HF2 A;  3BH7 B;  4OJ6 A;  2YUH A;  4OPW A;  1KQ5 A;  1CLW A;  5JLV C;  2VFM A;  4V02 C;  2VFQ A;  3LYC A;  1WXR A;  4OM9 A;  4OJO A;  2F3L A;  2VFO A;  1DAB A;  1TYW A;  2BM7 A;  1TYV A;  2VFN A;  2XC1 A;  3P4G A;  4OJ5 A;  2BM4 A;  2IOU G;  3SYJ A;  2B0R A;  5JMC B;  3AK5 A;  3PET A;  3JX8 A;  1QA3 A;  1K4Z A;  1TSP A;  3ML3 A;  3BH6 B;  2BM5 A;  4KH3 A;  1QA1 A;  1QA2 A;  3N90 A;  2W7Z A;  4JRA C;  4OJL A;  1QQ1 A;  1TYX A;  3LJY A;  2BX6 A;  3N6Z A;  2V5I A;  3TH0 A;  3SZE A;  2J8I A;  1QRB A;  3RIQ A;  4OJP A;  1K8F A;  1QRC A;  2BM6 A;  1TYU A;  2VFP A;  3H09 A;  2G0Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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