2VFMA

Low temperature structure of p22 tailspike protein fragment (109-666)
Total Genus 201
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
201
sequence length
555
structure length
555
Chain Sequence
QYSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords BIFUNCTIONAL TAIL PROTEIN
publication title Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein
rcsb
source organism Enterobacteria phage p22
total genus 201
structure length 555
sequence length 555
ec nomenclature ec 3.2.1.-:
pdb deposition date 2007-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2vfmA00
2VFQA 3ML3A 1CLWA 2IOUG 2VFNA 3SZEA 4KH3A 1QRBA 2VFOA 1WXRA 1TSPA 2VFMA 3AK5A 1TYUA 3TH0A 3SYJA 2XC1A 1TYXA 2V5IA 2VFPA 3H09A 1DABA 1QQ1A 1TYVA 1QA2A 1QA3A 1QA1A 1TYWA 4OM9A 1QRCA 3RIQA
chains in the Genus database with same CATH superfamily
2XTYA 4XOPA 1OOCA 3JX8A 3WWGA 4XN0A 1O8HA 2XT4A 5DNSA 2XTWA 1K8FA 1O8GA 4U49A 1IA5A 1XG2A 3LJYA 4YZ0A 1QRBA 2Z8GA 4U4BA 4AVZA 2INVA 1PXZA 2J8KA 1QCXA 2XTXA 1O8EA 2NTBA 4OZYA 4JRAC 2XC1A 4Z05A 1AIRA 1RWRA 1O8JA 3H09A 2NZMA 4YC5A 5AMVA 1QQ1A 1DABA 3PETA 2X6YA 3LMWA 3NB2A 3T9GA 1RU4A 2X85A 3GQAA 2BSPA 1EZGA 4W8QA 1OGMX 4OM9A 1O8KA 1IDJA 2QY1A 2PYGA 4OJLA 2QX3A 2QZAA 4Z06A 1OFEA 4Z03A 1DBGA 3PSSA 4OJ5A 4XQFA 4MXNA 2BM6A 4YZXA 2VFNA 3SZEA 4KH3A 3N6ZA 2QYUA 2F3LA 4I84A 3SUCA 2VFOA 4NK8A 2W7ZA 4C2LA 1JRGA 2O6WA 4W8RA 1O8MA 1EA0A 4YEJA 1KCDA 1PE9A 1OFDA 2EWEA 3NAWA 4XL9A 3TH0A 3VSUA 4YZQA 1H80A 3SYJA 3JURA 1BN8A 1TYXA 3EQOA 4XKVA 1K5CA 1LLWA 2NSTA 3FY3A 4XNFA 1OFMA 1BHEA 4XLAA 2VBMA 1LLZA 1IB4A 1O8FA 2B0RA 2NT6A 4XM3A 2QXZA 3B90A 2O0VA 4V02C 1TYWA 4XKWA 4EW9A 2O17A 3GRHA 3VSTA 4XMYA 4XLCA 1O8DA 2PYHA 1QRCA 4W8SA 4YDTA 1WMRA 3VMWA 4XN3A 3GQ9A 2O04A 2VFQA 4YZAA 2IQ7A 3ML3A 4OPWA 5JMCB 1CLWA 1KQ5A 2VJJA 3ZSCA 2NT9A 3EQNA 3P4GA 2X6XA 1VBLA 1EE6A 4XORA 1WXRA 3SY2A 2VFMA 4XR6A 4YELA 3GQ7A 4XLHA 3AK5A 1L1IA 4OZZA 4OJOA 1JTAA 3PSZA 2VBKA 2NSPA 3GQ8A 2O0WA 1K4ZA 2V5IA 2VFPA 4OJ6A 1TYVA 2VJIA 2X6WA 3B4NA 1DBOA 1QJVA 4XONA 4XLEA 1X0CA 2BX6A 1GQ8A 1CZFA 1HF2A 3B8YA 4OJPA 3KRGA 4XOTA 2XT2A 2J8IA 4HWVA 2NTQA 3RIQA 3VSVA 3BH7B 2VBEA 2X3HA 4MR0A 5C1CA 2IOUG 1KCCA 1HG8A 3LYCA 1PLUA 3N90A 2INUA 2BM4A 1TSPA 4NK6A 1OFLA 3BH6B 3VMVA 3DU1X 4XLFA 4URRA 1TYUA 2PECA 2O1DA 2ODLA 1O8LA 5JLVC 2BM7A 4W8TA 3SQVA 5C1EA 2YUHA 4YFOA 2BM5A 2NTPA 1QA2A 1QA3A 2UVEA 1LM1A 1KTWA 1QA1A 1O8IA 1IDKA 1OGOX 4YEIA 2UVFA 4PMHA 1O88A 4YCQA 3ZPPA 1NHCA 2G0YA 3UW0A 1RMGA
chains in the Genus database with same CATH topology
3BH7B 2VFQA 3JX8A 3ML3A 4OJ5A 4OPWA 5JMCB 2BM6A 1CLWA 1KQ5A 2IOUG 2VFNA 3LYCA 3SZEA 1K8FA 3N90A 3N6ZA 4KH3A 2F3LA 3P4GA 3LJYA 2BM4A 1QRBA 2VFOA 1WXRA 1TSPA 2W7ZA 2VFMA 3BH6B 3AK5A 1TYUA 4OJOA 3RIQA 3TH0A 4JRAC 3SYJA 5JLVC 2BM7A 1TYXA 2XC1A 2V5IA 1K4ZA 2VFPA 2YUHA 3H09A 1DABA 1QQ1A 2BM5A 1TYVA 4OJ6A 3PETA 1QA2A 1QA3A 2B0RA 2BX6A 4V02C 1HF2A 1QA1A 1TYWA 4OJPA 4OM9A 1QRCA 2G0YA 2J8IA 4OJLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VFQ A;  3ML3 A;  1CLW A;  2IOU G;  2VFN A;  3SZE A;  4KH3 A;  1QRB A;  2VFO A;  1WXR A;  1TSP A;  2VFM A;  3AK5 A;  1TYU A;  3TH0 A;  3SYJ A;  2XC1 A;  1TYX A;  2V5I A;  2VFP A;  3H09 A;  1DAB A;  1QQ1 A;  1TYV A;  1QA2 A;  1QA3 A;  1QA1 A;  1TYW A;  4OM9 A;  1QRC A;  3RIQ A; 
#chains in the Genus database with same CATH topology
 2XTY A;  4XOP A;  1OOC A;  3JX8 A;  3WWG A;  4XN0 A;  1O8H A;  2XT4 A;  5DNS A;  2XTW A;  1K8F A;  1O8G A;  4U49 A;  1IA5 A;  1XG2 A;  3LJY A;  4YZ0 A;  1QRB A;  2Z8G A;  4U4B A;  4AVZ A;  2INV A;  1PXZ A;  2J8K A;  1QCX A;  2XTX A;  1O8E A;  2NTB A;  4OZY A;  4JRA C;  2XC1 A;  4Z05 A;  1AIR A;  1RWR A;  1O8J A;  3H09 A;  2NZM A;  4YC5 A;  5AMV A;  1QQ1 A;  1DAB A;  3PET A;  2X6Y A;  3LMW A;  3NB2 A;  3T9G A;  1RU4 A;  2X85 A;  3GQA A;  2BSP A;  1EZG A;  4W8Q A;  1OGM X;  4OM9 A;  1O8K A;  1IDJ A;  2QY1 A;  2PYG A;  4OJL A;  2QX3 A;  2QZA A;  4Z06 A;  1OFE A;  4Z03 A;  1DBG A;  3PSS A;  4OJ5 A;  4XQF A;  4MXN A;  2BM6 A;  4YZX A;  2VFN A;  3SZE A;  4KH3 A;  3N6Z A;  2QYU A;  2F3L A;  4I84 A;  3SUC A;  2VFO A;  4NK8 A;  2W7Z A;  4C2L A;  1JRG A;  2O6W A;  4W8R A;  1O8M A;  1EA0 A;  4YEJ A;  1KCD A;  1PE9 A;  1OFD A;  2EWE A;  3NAW A;  4XL9 A;  3TH0 A;  3VSU A;  4YZQ A;  1H80 A;  3SYJ A;  3JUR A;  1BN8 A;  1TYX A;  3EQO A;  4XKV A;  1K5C A;  1LLW A;  2NST A;  3FY3 A;  4XNF A;  1OFM A;  1BHE A;  4XLA A;  2VBM A;  1LLZ A;  1IB4 A;  1O8F A;  2B0R A;  2NT6 A;  4XM3 A;  2QXZ A;  3B90 A;  2O0V A;  4V02 C;  1TYW A;  4XKW A;  4EW9 A;  2O17 A;  3GRH A;  3VST A;  4XMY A;  4XLC A;  1O8D A;  2PYH A;  1QRC A;  4W8S A;  4YDT A;  1WMR A;  3VMW A;  4XN3 A;  3GQ9 A;  2O04 A;  2VFQ A;  4YZA A;  2IQ7 A;  3ML3 A;  4OPW A;  5JMC B;  1CLW A;  1KQ5 A;  2VJJ A;  3ZSC A;  2NT9 A;  3EQN A;  3P4G A;  2X6X A;  1VBL A;  1EE6 A;  4XOR A;  1WXR A;  3SY2 A;  2VFM A;  4XR6 A;  4YEL A;  3GQ7 A;  4XLH A;  3AK5 A;  1L1I A;  4OZZ A;  4OJO A;  1JTA A;  3PSZ A;  2VBK A;  2NSP A;  3GQ8 A;  2O0W A;  1K4Z A;  2V5I A;  2VFP A;  4OJ6 A;  1TYV A;  2VJI A;  2X6W A;  3B4N A;  1DBO A;  1QJV A;  4XON A;  4XLE A;  1X0C A;  2BX6 A;  1GQ8 A;  1CZF A;  1HF2 A;  3B8Y A;  4OJP A;  3KRG A;  4XOT A;  2XT2 A;  2J8I A;  4HWV A;  2NTQ A;  3RIQ A;  3VSV A;  3BH7 B;  2VBE A;  2X3H A;  4MR0 A;  5C1C A;  2IOU G;  1KCC A;  1HG8 A;  3LYC A;  1PLU A;  3N90 A;  2INU A;  2BM4 A;  1TSP A;  4NK6 A;  1OFL A;  3BH6 B;  3VMV A;  3DU1 X;  4XLF A;  4URR A;  1TYU A;  2PEC A;  2O1D A;  2ODL A;  1O8L A;  5JLV C;  2BM7 A;  4W8T A;  3SQV A;  5C1E A;  2YUH A;  4YFO A;  2BM5 A;  2NTP A;  1QA2 A;  1QA3 A;  2UVE A;  1LM1 A;  1KTW A;  1QA1 A;  1O8I A;  1IDK A;  1OGO X;  4YEI A;  2UVF A;  4PMH A;  1O88 A;  4YCQ A;  3ZPP A;  1NHC A;  2G0Y A;  3UW0 A;  1RMG A; 
#chains in the Genus database with same CATH homology
 3BH7 B;  2VFQ A;  3JX8 A;  3ML3 A;  4OJ5 A;  4OPW A;  5JMC B;  2BM6 A;  1CLW A;  1KQ5 A;  2IOU G;  2VFN A;  3LYC A;  3SZE A;  1K8F A;  3N90 A;  3N6Z A;  4KH3 A;  2F3L A;  3P4G A;  3LJY A;  2BM4 A;  1QRB A;  2VFO A;  1WXR A;  1TSP A;  2W7Z A;  2VFM A;  3BH6 B;  3AK5 A;  1TYU A;  4OJO A;  3RIQ A;  3TH0 A;  4JRA C;  3SYJ A;  5JLV C;  2BM7 A;  1TYX A;  2XC1 A;  2V5I A;  1K4Z A;  2VFP A;  2YUH A;  3H09 A;  1DAB A;  1QQ1 A;  2BM5 A;  1TYV A;  4OJ6 A;  3PET A;  1QA2 A;  1QA3 A;  2B0R A;  2BX6 A;  4V02 C;  1HF2 A;  1QA1 A;  1TYW A;  4OJP A;  4OM9 A;  1QRC A;  2G0Y A;  2J8I A;  4OJL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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