1TYUA

Structure of tailspike-protein
Total Genus 189
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
189
sequence length
554
structure length
543
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral adhesion protein
molecule keywords TAILSPIKE PROTEIN
publication title Crystal structure of phage P22 tailspike protein complexed with Salmonella sp. O-antigen receptors.
pubmed doi rcsb
source organism Enterobacteria phage p22
total genus 189
structure length 543
sequence length 554
ec nomenclature
pdb deposition date 1996-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1tyuA00
1QA3A 1TYVA 3ML3A 1QA1A 3TH0A 4KH3A 1QRBA 2XC1A 1CLWA 1QQ1A 3RIQA 1QA2A 2IOUG 2VFQA 3AK5A 2VFOA 3H09A 1TYXA 1WXRA 1TYUA 1TSPA 1DABA 2V5IA 3SZEA 2VFMA 2VFPA 1QRCA 4OM9A 1TYWA 3SYJA 2VFNA
chains in the Genus database with same CATH superfamily
1IA5A 2X6YA 3GQ9A 2NTPA 1LLWA 4OZYA 3VSVA 1NHCA 3EQOA 1TYVA 2VBMA 3GQ7A 1O8MA 4OJOA 4Z06A 1OGOX 1JTAA 3DU1X 2VBEA 2QXZA 4XM3A 2EWEA 4MR0A 1KTWA 2NSTA 1BN8A 4U49A 2BM4A 1L1IA 3B4NA 3N90A 2J8IA 2O1DA 3N6ZA 2YUHA 3LYCA 2XTYA 2BM6A 2QZAA 3UW0A 1PE9A 3LJYA 1OOCA 4XLHA 2PECA 4YDTA 2QX3A 2NSPA 3PSZA 1KCDA 3H09A 4AVZA 4YZXA 1WXRA 1K8FA 3T9GA 1TYUA 1TSPA 1DABA 1O8FA 2UVEA 1O8IA 1WMRA 1O8GA 4XNFA 2ODLA 4YEJA 4OM9A 3SUCA 3VMWA 3SQVA 2NTQA 3KRGA 4W8TA 2X6XA 4XORA 2X6WA 3P4GA 2Z8GA 3PETA 2BSPA 1VBLA 4YZQA 2NT6A 5AMVA 1IB4A 1PXZA 1K4ZA 5DNSA 3NAWA 4YC5A 2QYUA 4OPWA 4XONA 2NTBA 4URRA 3B8YA 1CLWA 2NT9A 3JURA 4Z05A 3SY2A 3BH7B 3PSSA 4PMHA 4U4BA 1O8LA 1LLZA 4XLAA 3VSTA 2VFQA 3AK5A 4XLCA 4MXNA 4XN0A 4NK6A 4C2LA 4NK8A 4Z03A 1O88A 3SZEA 4EW9A 2VFPA 1QCXA 1QRCA 2PYGA 3GQ8A 2F3LA 1TYWA 4XMYA 3SYJA 1H80A 1XG2A 5C1EA 1O8KA 1DBGA 4XOTA 4W8SA 1QA3A 4JRAC 1OFDA 4XLEA 3ML3A 5C1CA 2B0RA 1AIRA 5JMCB 1HF2A 3TH0A 3JX8A 4YCQA 4KH3A 4V02C 1QA1A 2PYHA 1QRBA 1EZGA 1EA0A 2O0VA 4YZ0A 3EQNA 1PLUA 4OJLA 4XLFA 2W7ZA 3NB2A 1O8EA 1O8HA 4YEIA 4I84A 1OFEA 4XR6A 2XTXA 2VFOA 2XTWA 4XKWA 1OFLA 2G0YA 2O6WA 1HG8A 2VJIA 2INUA 1RWRA 2VJJA 1RU4A 4XN3A 4YELA 3BH6B 1GQ8A 2V5IA 4YFOA 1IDKA 4XQFA 1QJVA 2VFMA 4OJPA 1O8DA 4XOPA 1KCCA 3ZPPA 1CZFA 2BM7A 1OFMA 1EE6A 4XL9A 2IQ7A 5JLVC 4OZZA 1OGMX 4W8RA 2QY1A 2UVFA 2X85A 2X3HA 3B90A 3GQAA 4W8QA 3LMWA 3VMVA 1O8JA 1BHEA 1RMGA 2BX6A 2XC1A 2J8KA 3FY3A 3WWGA 1K5CA 1IDJA 2O04A 1QQ1A 2BM5A 3RIQA 1DBOA 2IOUG 2XT4A 4YZAA 1QA2A 1TYXA 2O17A 2INVA 1JRGA 2O0WA 1KQ5A 4HWVA 4OJ6A 2VBKA 2XT2A 4XKVA 3VSUA 2NZMA 4OJ5A 3ZSCA 1LM1A 3GRHA 2VFNA 1X0CA
chains in the Genus database with same CATH topology
2BM7A 1QA3A 4JRAC 1TYVA 5JLVC 3ML3A 4OJOA 2B0RA 5JMCB 1HF2A 3TH0A 3JX8A 1QA1A 4KH3A 3P4GA 4V02C 3PETA 1QRBA 2BM4A 3N90A 3N6ZA 2J8IA 1K4ZA 2F3LA 2BX6A 2XC1A 2YUHA 3LYCA 4OPWA 4OJLA 2W7ZA 1CLWA 2BM6A 3BH7B 1QQ1A 2BM5A 3LJYA 3RIQA 1QA2A 2IOUG 2VFQA 3AK5A 2VFOA 2G0YA 1TYXA 3H09A 1WXRA 1K8FA 1TYUA 1TSPA 1DABA 3BH6B 1KQ5A 2V5IA 4OJ6A 3SZEA 2VFMA 4OJPA 2VFPA 4OJ5A 1QRCA 4OM9A 1TYWA 3SYJA 2VFNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QA3 A;  1TYV A;  3ML3 A;  1QA1 A;  3TH0 A;  4KH3 A;  1QRB A;  2XC1 A;  1CLW A;  1QQ1 A;  3RIQ A;  1QA2 A;  2IOU G;  2VFQ A;  3AK5 A;  2VFO A;  3H09 A;  1TYX A;  1WXR A;  1TYU A;  1TSP A;  1DAB A;  2V5I A;  3SZE A;  2VFM A;  2VFP A;  1QRC A;  4OM9 A;  1TYW A;  3SYJ A;  2VFN A; 
#chains in the Genus database with same CATH topology
 1IA5 A;  2X6Y A;  3GQ9 A;  2NTP A;  1LLW A;  4OZY A;  3VSV A;  1NHC A;  3EQO A;  1TYV A;  2VBM A;  3GQ7 A;  1O8M A;  4OJO A;  4Z06 A;  1OGO X;  1JTA A;  3DU1 X;  2VBE A;  2QXZ A;  4XM3 A;  2EWE A;  4MR0 A;  1KTW A;  2NST A;  1BN8 A;  4U49 A;  2BM4 A;  1L1I A;  3B4N A;  3N90 A;  2J8I A;  2O1D A;  3N6Z A;  2YUH A;  3LYC A;  2XTY A;  2BM6 A;  2QZA A;  3UW0 A;  1PE9 A;  3LJY A;  1OOC A;  4XLH A;  2PEC A;  4YDT A;  2QX3 A;  2NSP A;  3PSZ A;  1KCD A;  3H09 A;  4AVZ A;  4YZX A;  1WXR A;  1K8F A;  3T9G A;  1TYU A;  1TSP A;  1DAB A;  1O8F A;  2UVE A;  1O8I A;  1WMR A;  1O8G A;  4XNF A;  2ODL A;  4YEJ A;  4OM9 A;  3SUC A;  3VMW A;  3SQV A;  2NTQ A;  3KRG A;  4W8T A;  2X6X A;  4XOR A;  2X6W A;  3P4G A;  2Z8G A;  3PET A;  2BSP A;  1VBL A;  4YZQ A;  2NT6 A;  5AMV A;  1IB4 A;  1PXZ A;  1K4Z A;  5DNS A;  3NAW A;  4YC5 A;  2QYU A;  4OPW A;  4XON A;  2NTB A;  4URR A;  3B8Y A;  1CLW A;  2NT9 A;  3JUR A;  4Z05 A;  3SY2 A;  3BH7 B;  3PSS A;  4PMH A;  4U4B A;  1O8L A;  1LLZ A;  4XLA A;  3VST A;  2VFQ A;  3AK5 A;  4XLC A;  4MXN A;  4XN0 A;  4NK6 A;  4C2L A;  4NK8 A;  4Z03 A;  1O88 A;  3SZE A;  4EW9 A;  2VFP A;  1QCX A;  1QRC A;  2PYG A;  3GQ8 A;  2F3L A;  1TYW A;  4XMY A;  3SYJ A;  1H80 A;  1XG2 A;  5C1E A;  1O8K A;  1DBG A;  4XOT A;  4W8S A;  1QA3 A;  4JRA C;  1OFD A;  4XLE A;  3ML3 A;  5C1C A;  2B0R A;  1AIR A;  5JMC B;  1HF2 A;  3TH0 A;  3JX8 A;  4YCQ A;  4KH3 A;  4V02 C;  1QA1 A;  2PYH A;  1QRB A;  1EZG A;  1EA0 A;  2O0V A;  4YZ0 A;  3EQN A;  1PLU A;  4OJL A;  4XLF A;  2W7Z A;  3NB2 A;  1O8E A;  1O8H A;  4YEI A;  4I84 A;  1OFE A;  4XR6 A;  2XTX A;  2VFO A;  2XTW A;  4XKW A;  1OFL A;  2G0Y A;  2O6W A;  1HG8 A;  2VJI A;  2INU A;  1RWR A;  2VJJ A;  1RU4 A;  4XN3 A;  4YEL A;  3BH6 B;  1GQ8 A;  2V5I A;  4YFO A;  1IDK A;  4XQF A;  1QJV A;  2VFM A;  4OJP A;  1O8D A;  4XOP A;  1KCC A;  3ZPP A;  1CZF A;  2BM7 A;  1OFM A;  1EE6 A;  4XL9 A;  2IQ7 A;  5JLV C;  4OZZ A;  1OGM X;  4W8R A;  2QY1 A;  2UVF A;  2X85 A;  2X3H A;  3B90 A;  3GQA A;  4W8Q A;  3LMW A;  3VMV A;  1O8J A;  1BHE A;  1RMG A;  2BX6 A;  2XC1 A;  2J8K A;  3FY3 A;  3WWG A;  1K5C A;  1IDJ A;  2O04 A;  1QQ1 A;  2BM5 A;  3RIQ A;  1DBO A;  2IOU G;  2XT4 A;  4YZA A;  1QA2 A;  1TYX A;  2O17 A;  2INV A;  1JRG A;  2O0W A;  1KQ5 A;  4HWV A;  4OJ6 A;  2VBK A;  2XT2 A;  4XKV A;  3VSU A;  2NZM A;  4OJ5 A;  3ZSC A;  1LM1 A;  3GRH A;  2VFN A;  1X0C A; 
#chains in the Genus database with same CATH homology
 2BM7 A;  1QA3 A;  4JRA C;  1TYV A;  5JLV C;  3ML3 A;  4OJO A;  2B0R A;  5JMC B;  1HF2 A;  3TH0 A;  3JX8 A;  1QA1 A;  4KH3 A;  3P4G A;  4V02 C;  3PET A;  1QRB A;  2BM4 A;  3N90 A;  3N6Z A;  2J8I A;  1K4Z A;  2F3L A;  2BX6 A;  2XC1 A;  2YUH A;  3LYC A;  4OPW A;  4OJL A;  2W7Z A;  1CLW A;  2BM6 A;  3BH7 B;  1QQ1 A;  2BM5 A;  3LJY A;  3RIQ A;  1QA2 A;  2IOU G;  2VFQ A;  3AK5 A;  2VFO A;  2G0Y A;  1TYX A;  3H09 A;  1WXR A;  1K8F A;  1TYU A;  1TSP A;  1DAB A;  3BH6 B;  1KQ5 A;  2V5I A;  4OJ6 A;  3SZE A;  2VFM A;  4OJP A;  2VFP A;  4OJ5 A;  1QRC A;  4OM9 A;  1TYW A;  3SYJ A;  2VFN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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