1TYUA

Structure of tailspike-protein
Total Genus 189
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
189
sequence length
554
structure length
543
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords TAILSPIKE PROTEIN
publication title Crystal structure of phage P22 tailspike protein complexed with Salmonella sp. O-antigen receptors.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral adhesion protein
total genus 189
structure length 543
sequence length 554
ec nomenclature
pdb deposition date 1996-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1tyuA00
3SYJA 1QRBA 1QA2A 1CLWA 1QRCA 3H09A 3ML3A 1QQ1A 2VFPA 3AK5A 1QA1A 1DABA 2V5IA 2IOUG 4KH3A 3TH0A 3RIQA 1TYXA 1TYUA 1TSPA 1TYVA 4OM9A 2VFQA 2VFMA 2XC1A 3SZEA 1WXRA 1QA3A 2VFOA 1TYWA 2VFNA
chains in the Genus database with same CATH superfamily
2O0VA 1QA2A 1O8LA 1CLWA 1XG2A 2INUA 2O04A 1X0CA 3BH6B 3ML3A 1JRGA 1O8JA 4OJOA 1IDJA 3B4NA 1OFDA 4XLAA 2QX3A 1K4ZA 2NTPA 2XTWA 3T9GA 4OZZA 3EQNA 1DABA 2O0WA 2INVA 1VBLA 2IOUG 2O1DA 2X6WA 1O8EA 2NT9A 3RIQA 1BHEA 1TYXA 1PE9A 1TSPA 5AMVA 4YZ0A 2NZMA 2UVEA 4XOPA 2QXZA 4W8QA 4XKWA 4Z03A 1DBOA 2QYUA 3NAWA 1AIRA 1O88A 2EWEA 2PYHA 3GQAA 1O8HA 2VFNA 2VBMA 4AVZA 1QJVA 2VBEA 3PETA 3SUCA 4YDTA 2F3LA 4YELA 3N90A 1OFMA 3UW0A 4Z05A 1QRCA 2BM4A 4OJ5A 4JRAC 4XLCA 1CZFA 4U4BA 2O6WA 2QY1A 3SY2A 3VMWA 1QA1A 4XLEA 5DNSA 3GQ7A 4XORA 2IQ7A 4OJ6A 4W8SA 3LYCA 3KRGA 2J8KA 2W7ZA 3SQVA 4OZYA 1JTAA 1PLUA 4NK8A 4URRA 1O8DA 4C2LA 5C1CA 1L1IA 4OPWA 3VSTA 1EA0A 1TYVA 2NT6A 2VJIA 2NSTA 4HWVA 4YFOA 2VFMA 3SZEA 1WXRA 3B90A 1QA3A 4PMHA 1HF2A 4W8TA 2XT2A 1HG8A 4MR0A 3FY3A 5JLVC 1O8FA 3EQOA 1WMRA 1DBGA 2PECA 1NHCA 1QRBA 2NTBA 2XTXA 3ZPPA 2VBKA 1BN8A 2X6XA 4YEIA 1PXZA 1OOCA 2G0YA 4XN0A 1QQ1A 1K5CA 1O8GA 2XTYA 2BM6A 4XLHA 4YEJA 3AK5A 2YUHA 2ODLA 2X6YA 1RMGA 4NK6A 3GRHA 4XLFA 4XR6A 4XQFA 1KQ5A 2V5IA 1KTWA 1O8MA 4XN3A 5JMCB 3GQ8A 4KH3A 4XONA 1IA5A 1IB4A 2B0RA 2O17A 3TH0A 4YZAA 1EZGA 3P4GA 3PSZA 1TYUA 4U49A 4XL9A 4OJLA 3LMWA 4XNFA 2NTQA 2VFQA 4XM3A 1RU4A 1KCCA 2VFOA 2BM7A 1TYWA 2Z8GA 3GQ9A 4XKVA 3VSUA 2BSPA 3SYJA 1K8FA 3JX8A 4MXNA 2QZAA 3WWGA 2UVFA 4YZXA 3H09A 3N6ZA 3VSVA 1OGOX 1RWRA 2VFPA 4YZQA 3B8YA 1H80A 4OJPA 2X3HA 3BH7B 1LM1A 1EE6A 2NSPA 3NB2A 3DU1X 3ZSCA 2BM5A 3JURA 1GQ8A 5C1EA 2X85A 3PSSA 1O8KA 2J8IA 4EW9A 1LLWA 4OM9A 1QCXA 1OFEA 1KCDA 4XOTA 2VJJA 2BX6A 4YC5A 2XC1A 1IDKA 3LJYA 2PYGA 4YCQA 4I84A 4XMYA 1OGMX 4W8RA 4Z06A 2XT4A 1OFLA 3VMVA 1O8IA 1LLZA 4V02C
chains in the Genus database with same CATH topology
3SYJA 1K8FA 1QRBA 2F3LA 3JX8A 1QA2A 3N90A 1CLWA 1QRCA 2BM4A 3H09A 3BH6B 2G0YA 3N6ZA 4JRAC 4OJ5A 1QQ1A 3ML3A 2VFPA 4OJOA 2BM6A 3AK5A 4OJPA 1QA1A 1K4ZA 2YUHA 3BH7B 4OJ6A 2BM5A 1KQ5A 3LYCA 2V5IA 1DABA 2W7ZA 2IOUG 2J8IA 5JMCB 4KH3A 2B0RA 3TH0A 3P4GA 4OPWA 3RIQA 1TYXA 1TYUA 1TSPA 1TYVA 4OM9A 4OJLA 2BX6A 2VFQA 2VFMA 2XC1A 3SZEA 1WXRA 3LJYA 1QA3A 1HF2A 2VFOA 2BM7A 5JLVC 1TYWA 2VFNA 3PETA 4V02C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SYJ A;  1QRB A;  1QA2 A;  1CLW A;  1QRC A;  3H09 A;  3ML3 A;  1QQ1 A;  2VFP A;  3AK5 A;  1QA1 A;  1DAB A;  2V5I A;  2IOU G;  4KH3 A;  3TH0 A;  3RIQ A;  1TYX A;  1TYU A;  1TSP A;  1TYV A;  4OM9 A;  2VFQ A;  2VFM A;  2XC1 A;  3SZE A;  1WXR A;  1QA3 A;  2VFO A;  1TYW A;  2VFN A; 
#chains in the Genus database with same CATH topology
 2O0V A;  1QA2 A;  1O8L A;  1CLW A;  1XG2 A;  2INU A;  2O04 A;  1X0C A;  3BH6 B;  3ML3 A;  1JRG A;  1O8J A;  4OJO A;  1IDJ A;  3B4N A;  1OFD A;  4XLA A;  2QX3 A;  1K4Z A;  2NTP A;  2XTW A;  3T9G A;  4OZZ A;  3EQN A;  1DAB A;  2O0W A;  2INV A;  1VBL A;  2IOU G;  2O1D A;  2X6W A;  1O8E A;  2NT9 A;  3RIQ A;  1BHE A;  1TYX A;  1PE9 A;  1TSP A;  5AMV A;  4YZ0 A;  2NZM A;  2UVE A;  4XOP A;  2QXZ A;  4W8Q A;  4XKW A;  4Z03 A;  1DBO A;  2QYU A;  3NAW A;  1AIR A;  1O88 A;  2EWE A;  2PYH A;  3GQA A;  1O8H A;  2VFN A;  2VBM A;  4AVZ A;  1QJV A;  2VBE A;  3PET A;  3SUC A;  4YDT A;  2F3L A;  4YEL A;  3N90 A;  1OFM A;  3UW0 A;  4Z05 A;  1QRC A;  2BM4 A;  4OJ5 A;  4JRA C;  4XLC A;  1CZF A;  4U4B A;  2O6W A;  2QY1 A;  3SY2 A;  3VMW A;  1QA1 A;  4XLE A;  5DNS A;  3GQ7 A;  4XOR A;  2IQ7 A;  4OJ6 A;  4W8S A;  3LYC A;  3KRG A;  2J8K A;  2W7Z A;  3SQV A;  4OZY A;  1JTA A;  1PLU A;  4NK8 A;  4URR A;  1O8D A;  4C2L A;  5C1C A;  1L1I A;  4OPW A;  3VST A;  1EA0 A;  1TYV A;  2NT6 A;  2VJI A;  2NST A;  4HWV A;  4YFO A;  2VFM A;  3SZE A;  1WXR A;  3B90 A;  1QA3 A;  4PMH A;  1HF2 A;  4W8T A;  2XT2 A;  1HG8 A;  4MR0 A;  3FY3 A;  5JLV C;  1O8F A;  3EQO A;  1WMR A;  1DBG A;  2PEC A;  1NHC A;  1QRB A;  2NTB A;  2XTX A;  3ZPP A;  2VBK A;  1BN8 A;  2X6X A;  4YEI A;  1PXZ A;  1OOC A;  2G0Y A;  4XN0 A;  1QQ1 A;  1K5C A;  1O8G A;  2XTY A;  2BM6 A;  4XLH A;  4YEJ A;  3AK5 A;  2YUH A;  2ODL A;  2X6Y A;  1RMG A;  4NK6 A;  3GRH A;  4XLF A;  4XR6 A;  4XQF A;  1KQ5 A;  2V5I A;  1KTW A;  1O8M A;  4XN3 A;  5JMC B;  3GQ8 A;  4KH3 A;  4XON A;  1IA5 A;  1IB4 A;  2B0R A;  2O17 A;  3TH0 A;  4YZA A;  1EZG A;  3P4G A;  3PSZ A;  1TYU A;  4U49 A;  4XL9 A;  4OJL A;  3LMW A;  4XNF A;  2NTQ A;  2VFQ A;  4XM3 A;  1RU4 A;  1KCC A;  2VFO A;  2BM7 A;  1TYW A;  2Z8G A;  3GQ9 A;  4XKV A;  3VSU A;  2BSP A;  3SYJ A;  1K8F A;  3JX8 A;  4MXN A;  2QZA A;  3WWG A;  2UVF A;  4YZX A;  3H09 A;  3N6Z A;  3VSV A;  1OGO X;  1RWR A;  2VFP A;  4YZQ A;  3B8Y A;  1H80 A;  4OJP A;  2X3H A;  3BH7 B;  1LM1 A;  1EE6 A;  2NSP A;  3NB2 A;  3DU1 X;  3ZSC A;  2BM5 A;  3JUR A;  1GQ8 A;  5C1E A;  2X85 A;  3PSS A;  1O8K A;  2J8I A;  4EW9 A;  1LLW A;  4OM9 A;  1QCX A;  1OFE A;  1KCD A;  4XOT A;  2VJJ A;  2BX6 A;  4YC5 A;  2XC1 A;  1IDK A;  3LJY A;  2PYG A;  4YCQ A;  4I84 A;  4XMY A;  1OGM X;  4W8R A;  4Z06 A;  2XT4 A;  1OFL A;  3VMV A;  1O8I A;  1LLZ A;  4V02 C; 
#chains in the Genus database with same CATH homology
 3SYJ A;  1K8F A;  1QRB A;  2F3L A;  3JX8 A;  1QA2 A;  3N90 A;  1CLW A;  1QRC A;  2BM4 A;  3H09 A;  3BH6 B;  2G0Y A;  3N6Z A;  4JRA C;  4OJ5 A;  1QQ1 A;  3ML3 A;  2VFP A;  4OJO A;  2BM6 A;  3AK5 A;  4OJP A;  1QA1 A;  1K4Z A;  2YUH A;  3BH7 B;  4OJ6 A;  2BM5 A;  1KQ5 A;  3LYC A;  2V5I A;  1DAB A;  2W7Z A;  2IOU G;  2J8I A;  5JMC B;  4KH3 A;  2B0R A;  3TH0 A;  3P4G A;  4OPW A;  3RIQ A;  1TYX A;  1TYU A;  1TSP A;  1TYV A;  4OM9 A;  4OJL A;  2BX6 A;  2VFQ A;  2VFM A;  2XC1 A;  3SZE A;  1WXR A;  3LJY A;  1QA3 A;  1HF2 A;  2VFO A;  2BM7 A;  5JLV C;  1TYW A;  2VFN A;  3PET A;  4V02 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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