1KTWA

Iota-carrageenase complexed to iota-carrageenan fragments
Total Genus 166
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
166
sequence length
464
structure length
457
Chain Sequence
VSPKTYKDADFYVAPTQQDVNYDLVDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTYHFLGIQMKSNVHIRVESDVIIKPTWNGDGKNHRLFEVGVNNIVRNFSFQGLGNGFLVDFKDSRDKNLAVFKLGDVRNYKISNFTIDDNKTIFASILVDVTERNGRLHWSRNGIIERIKQNNALFGYGLIQTYGADNILFRNLHSEGGIALRMETDNLLMKNYKQGGIRNIFADNIRCSKGLAAVMFGPHFMKNGDVQVTNVSSVSCGSAVRSDSGFVELFSPTDEVHTRQSWKQAVESKLGRGCAQTPYAWAARVTQKDACLDKAKLEYGIEPGSFGTVKVFDVTARFGYNADLKQDQLDYFSTSNPMCKRVCLPTKEQWSKQGQIYIGPSLAAVIDTTPETSKYDYDVKTFNVKRINFPVNSHKTIDTNTESSRVCNYYGMSECSSSRWER
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords IOTA-CARRAGEENASE
publication title The Structural Bases of the Processive Degradation of iota-Carrageenan, a Main Cell Wall Polysaccharide of Red Algae.
pubmed doi rcsb
source organism Alteromonas sp. atcc 43554
molecule tags Hydrolase
total genus 166
structure length 457
sequence length 464
chains with identical sequence B
ec nomenclature ec 3.2.1.157: Iota-carrageenase.
pdb deposition date 2002-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12708 Pectate_lyase_3 Pectate lyase superfamily protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1ktwA00
2NZMA 4C2LA 1PXZA 2UVFA 1O8MA 3GQ8A 4EW9A 4YZ0A 1BN8A 4YZQA 1GQ8A 1O88A 1BHEA 4W8TA 1X0CA 4YZXA 1K5CA 3GQ9A 4OJ5A 4XKWA 2VBKA 4XLFA 5C1EA 1JRGA 1RMGA 4OZZA 4XLAA 1IDJA 4XR6A 4W8RA 1O8EA 2PYHA 4XLHA 3VSVA 1O8LA 2BSPA 4OJPA 4Z06A 1IB4A 1O8HA 2O0WA 4W8SA 4OZYA 1OFMA 2VBEA 1RWRA 4HWVA 1RU4A 1KCCA 2X6YA 3KRGA 4XOPA 1IA5A 2INUA 3GRHA 5AMVA 2UVEA 3B4NA 2PYGA 1O8FA 4Z03A 4XL9A 4Z05A 1O8DA 4OJLA 2O17A 2ODLA 4XLCA 3ZPPA 1NHCA 1EE6A 3EQOA 2O0VA 4YZAA 2O04A 3SUCA 3VSTA 4OJOA 4XMYA 1PE9A 1WMRA 2X85A 4U49A 2NT9A 1H80A 3GQAA 4URRA 3VMWA 2X6WA 1PLUA 3FY3A 4XM3A 1QCXA 2O1DA 2PECA 1IDKA 3EQNA 4YEJA 1O8JA 3UW0A 3WWGA 1JTAA 4XKVA 3ZSCA 2VBMA 4OJ6A 2NSPA 4XQFA 4W8QA 3VMVA 2QXZA 2NTPA 1QJVA 5C1CA 1HG8A 1O8KA 4MXNA 3VSUA 2NT6A 4XN0A 3B90A 2X6XA 4MR0A 2Z8GA 2VJIA 3T9GA 1KCDA 3JURA 4YELA 1O8IA 2NSTA 4I84A 3GQ7A 1DBGA 2IQ7A 4NK6A 4PMHA 4XN3A 4XONA 2NTBA 3B8YA 1XG2A 1OOCA 4U4BA 2QX3A 2X3HA 2NTQA 1OGOX 2EWEA 4XORA 2INVA 1AIRA 4XOTA 1OGMX 3LMWA 2QY1A 2VJJA 1OFLA 1O8GA 1KTWA 1CZFA 4XNFA 1DBOA 4AVZA 4NK8A 1VBLA 4XLEA
chains in the Genus database with same CATH superfamily
2NZMA 4C2LA 1PXZA 2UVFA 1O8MA 3GQ8A 3PSSA 4EW9A 1BN8A 4YZQA 4YZ0A 1GQ8A 2W7ZA 1O88A 1BHEA 2XT4A 4W8TA 1X0CA 4YZXA 1L1IA 1K5CA 3GQ9A 2B0RA 4OJ5A 4XKWA 1QA2A 2VBKA 4XLFA 3TH0A 3SY2A 3PETA 5C1EA 4KH3A 1JRGA 1RMGA 4OZZA 4XLAA 1IDJA 2VFMA 4XR6A 4W8RA 1O8EA 2BM7A 1TYXA 2PYHA 4XLHA 3VSVA 1O8LA 2BSPA 4OJPA 1TYWA 4Z06A 1IB4A 1O8HA 2O0WA 1TYVA 1QA1A 3NAWA 2XTYA 4W8SA 4OZYA 1EA0A 1OFMA 4YEIA 2VBEA 1RWRA 3SQVA 1OFEA 4HWVA 5JMCB 1RU4A 3LJYA 1KCCA 3LYCA 2X6YA 3KRGA 4XOPA 1IA5A 2INUA 2VFQA 3GRHA 5AMVA 1KQ5A 2UVEA 3B4NA 2PYGA 2VFOA 1O8FA 2BM6A 4Z03A 4XL9A 4Z05A 1O8DA 4OJLA 2O17A 2ODLA 1QA3A 3P4GA 4XLCA 3NB2A 3ZPPA 1NHCA 3BH6B 1HF2A 1EE6A 3EQOA 2O0VA 3PSZA 4YZAA 2O04A 3SUCA 3AK5A 4YC5A 4OJOA 4XMYA 3VSTA 1PE9A 1WMRA 2X85A 4U49A 1TYUA 2NT9A 1H80A 1K4ZA 3GQAA 3SYJA 2VFNA 2BX6A 4URRA 2J8KA 3VMWA 2X6WA 1PLUA 1LM1A 3FY3A 4XM3A 1QCXA 2O1DA 2PECA 1IDKA 3EQNA 4YEJA 1O8JA 3JX8A 3UW0A 1JTAA 4XKVA 3WWGA 2VBMA 2QYUA 4OJ6A 3ZSCA 2NSPA 4JRAC 4XQFA 2XTWA 3ML3A 2BM4A 4W8QA 3VMVA 2QXZA 2NTPA 1QJVA 5C1CA 1HG8A 1O8KA 1TSPA 4MXNA 3VSUA 2NT6A 4XN0A 1QRCA 5JLVC 3B90A 3RIQA 2X6XA 4MR0A 1DABA 2Z8GA 2VJIA 3T9GA 1KCDA 3JURA 4OPWA 1WXRA 4YELA 1O8IA 2NSTA 2V5IA 3GQ7A 1DBGA 2IQ7A 1QQ1A 4I84A 4NK6A 4PMHA 4XN3A 4XONA 2NTBA 4V02C 3B8YA 1EZGA 1XG2A 1OOCA 4U4BA 2QX3A 3N90A 2X3HA 2NTQA 1OGOX 1OFDA 2XTXA 2EWEA 3DU1X 1K8FA 3BH7B 2INVA 1AIRA 4XOTA 1LLWA 4XORA 2VFPA 4YDTA 2O6WA 1OGMX 3LMWA 2QY1A 2J8IA 2G0YA 3N6ZA 2YUHA 2VJJA 1LLZA 2BM5A 3SZEA 2XT2A 1OFLA 4YFOA 1O8GA 1KTWA 2IOUG 1CZFA 2QZAA 1CLWA 2F3LA 1QRBA 3H09A 4YCQA 2XC1A 1DBOA 4XNFA 5DNSA 4AVZA 4NK8A 1VBLA 4OM9A 4XLEA
chains in the Genus database with same CATH topology
2NZMA 4C2LA 1PXZA 2UVFA 1O8MA 3GQ8A 4EW9A 4YZ0A 1BN8A 4YZQA 1GQ8A 1O88A 1BHEA 4W8TA 1X0CA 4YZXA 1K5CA 3GQ9A 4OJ5A 4XKWA 2VBKA 4XLFA 5C1EA 1JRGA 1RMGA 4OZZA 4XLAA 1IDJA 4XR6A 4W8RA 1O8EA 2PYHA 4XLHA 3VSVA 1O8LA 2BSPA 4OJPA 4Z06A 1IB4A 1O8HA 2O0WA 4W8SA 4OZYA 1OFMA 2VBEA 1RWRA 4HWVA 1RU4A 1KCCA 2X6YA 3KRGA 4XOPA 1IA5A 2INUA 3GRHA 5AMVA 2UVEA 3B4NA 2PYGA 1O8FA 4Z03A 4XL9A 4Z05A 1O8DA 4OJLA 2O17A 2ODLA 4XLCA 3ZPPA 1NHCA 1EE6A 3EQOA 2O0VA 4YZAA 2O04A 3SUCA 3VSTA 4OJOA 4XMYA 1PE9A 1WMRA 2X85A 4U49A 2NT9A 1H80A 3GQAA 4URRA 3VMWA 2X6WA 1PLUA 3FY3A 4XM3A 1QCXA 2O1DA 2PECA 1IDKA 3EQNA 4YEJA 1O8JA 3UW0A 3WWGA 1JTAA 4XKVA 3ZSCA 2VBMA 4OJ6A 2NSPA 4XQFA 4W8QA 3VMVA 2QXZA 2NTPA 1QJVA 5C1CA 1HG8A 1O8KA 4MXNA 3VSUA 2NT6A 4XN0A 3B90A 2X6XA 4MR0A 2Z8GA 2VJIA 3T9GA 1KCDA 3JURA 4YELA 1O8IA 2NSTA 4I84A 3GQ7A 1DBGA 2IQ7A 4NK6A 4PMHA 4XN3A 4XONA 2NTBA 3B8YA 1XG2A 1OOCA 4U4BA 2QX3A 2X3HA 2NTQA 1OGOX 2EWEA 4XORA 2INVA 1AIRA 4XOTA 1OGMX 3LMWA 2QY1A 2VJJA 1OFLA 1O8GA 1KTWA 1CZFA 4XNFA 1DBOA 4AVZA 4NK8A 1VBLA 4XLEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NZM A;  4C2L A;  1PXZ A;  2UVF A;  1O8M A;  3GQ8 A;  4EW9 A;  4YZ0 A;  1BN8 A;  4YZQ A;  1GQ8 A;  1O88 A;  1BHE A;  4W8T A;  1X0C A;  4YZX A;  1K5C A;  3GQ9 A;  4OJ5 A;  4XKW A;  2VBK A;  4XLF A;  5C1E A;  1JRG A;  1RMG A;  4OZZ A;  4XLA A;  1IDJ A;  4XR6 A;  4W8R A;  1O8E A;  2PYH A;  4XLH A;  3VSV A;  1O8L A;  2BSP A;  4OJP A;  4Z06 A;  1IB4 A;  1O8H A;  2O0W A;  4W8S A;  4OZY A;  1OFM A;  2VBE A;  1RWR A;  4HWV A;  1RU4 A;  1KCC A;  2X6Y A;  3KRG A;  4XOP A;  1IA5 A;  2INU A;  3GRH A;  5AMV A;  2UVE A;  3B4N A;  2PYG A;  1O8F A;  4Z03 A;  4XL9 A;  4Z05 A;  1O8D A;  4OJL A;  2O17 A;  2ODL A;  4XLC A;  3ZPP A;  1NHC A;  1EE6 A;  3EQO A;  2O0V A;  4YZA A;  2O04 A;  3SUC A;  3VST A;  4OJO A;  4XMY A;  1PE9 A;  1WMR A;  2X85 A;  4U49 A;  2NT9 A;  1H80 A;  3GQA A;  4URR A;  3VMW A;  2X6W A;  1PLU A;  3FY3 A;  4XM3 A;  1QCX A;  2O1D A;  2PEC A;  1IDK A;  3EQN A;  4YEJ A;  1O8J A;  3UW0 A;  3WWG A;  1JTA A;  4XKV A;  3ZSC A;  2VBM A;  4OJ6 A;  2NSP A;  4XQF A;  4W8Q A;  3VMV A;  2QXZ A;  2NTP A;  1QJV A;  5C1C A;  1HG8 A;  1O8K A;  4MXN A;  3VSU A;  2NT6 A;  4XN0 A;  3B90 A;  2X6X A;  4MR0 A;  2Z8G A;  2VJI A;  3T9G A;  1KCD A;  3JUR A;  4YEL A;  1O8I A;  2NST A;  4I84 A;  3GQ7 A;  1DBG A;  2IQ7 A;  4NK6 A;  4PMH A;  4XN3 A;  4XON A;  2NTB A;  3B8Y A;  1XG2 A;  1OOC A;  4U4B A;  2QX3 A;  2X3H A;  2NTQ A;  1OGO X;  2EWE A;  4XOR A;  2INV A;  1AIR A;  4XOT A;  1OGM X;  3LMW A;  2QY1 A;  2VJJ A;  1OFL A;  1O8G A;  1KTW A;  1CZF A;  4XNF A;  1DBO A;  4AVZ A;  4NK8 A;  1VBL A;  4XLE A; 
#chains in the Genus database with same CATH topology
 2NZM A;  4C2L A;  1PXZ A;  2UVF A;  1O8M A;  3GQ8 A;  3PSS A;  4EW9 A;  1BN8 A;  4YZQ A;  4YZ0 A;  1GQ8 A;  2W7Z A;  1O88 A;  1BHE A;  2XT4 A;  4W8T A;  1X0C A;  4YZX A;  1L1I A;  1K5C A;  3GQ9 A;  2B0R A;  4OJ5 A;  4XKW A;  1QA2 A;  2VBK A;  4XLF A;  3TH0 A;  3SY2 A;  3PET A;  5C1E A;  4KH3 A;  1JRG A;  1RMG A;  4OZZ A;  4XLA A;  1IDJ A;  2VFM A;  4XR6 A;  4W8R A;  1O8E A;  2BM7 A;  1TYX A;  2PYH A;  4XLH A;  3VSV A;  1O8L A;  2BSP A;  4OJP A;  1TYW A;  4Z06 A;  1IB4 A;  1O8H A;  2O0W A;  1TYV A;  1QA1 A;  3NAW A;  2XTY A;  4W8S A;  4OZY A;  1EA0 A;  1OFM A;  4YEI A;  2VBE A;  1RWR A;  3SQV A;  1OFE A;  4HWV A;  5JMC B;  1RU4 A;  3LJY A;  1KCC A;  3LYC A;  2X6Y A;  3KRG A;  4XOP A;  1IA5 A;  2INU A;  2VFQ A;  3GRH A;  5AMV A;  1KQ5 A;  2UVE A;  3B4N A;  2PYG A;  2VFO A;  1O8F A;  2BM6 A;  4Z03 A;  4XL9 A;  4Z05 A;  1O8D A;  4OJL A;  2O17 A;  2ODL A;  1QA3 A;  3P4G A;  4XLC A;  3NB2 A;  3ZPP A;  1NHC A;  3BH6 B;  1HF2 A;  1EE6 A;  3EQO A;  2O0V A;  3PSZ A;  4YZA A;  2O04 A;  3SUC A;  3AK5 A;  4YC5 A;  4OJO A;  4XMY A;  3VST A;  1PE9 A;  1WMR A;  2X85 A;  4U49 A;  1TYU A;  2NT9 A;  1H80 A;  1K4Z A;  3GQA A;  3SYJ A;  2VFN A;  2BX6 A;  4URR A;  2J8K A;  3VMW A;  2X6W A;  1PLU A;  1LM1 A;  3FY3 A;  4XM3 A;  1QCX A;  2O1D A;  2PEC A;  1IDK A;  3EQN A;  4YEJ A;  1O8J A;  3JX8 A;  3UW0 A;  1JTA A;  4XKV A;  3WWG A;  2VBM A;  2QYU A;  4OJ6 A;  3ZSC A;  2NSP A;  4JRA C;  4XQF A;  2XTW A;  3ML3 A;  2BM4 A;  4W8Q A;  3VMV A;  2QXZ A;  2NTP A;  1QJV A;  5C1C A;  1HG8 A;  1O8K A;  1TSP A;  4MXN A;  3VSU A;  2NT6 A;  4XN0 A;  1QRC A;  5JLV C;  3B90 A;  3RIQ A;  2X6X A;  4MR0 A;  1DAB A;  2Z8G A;  2VJI A;  3T9G A;  1KCD A;  3JUR A;  4OPW A;  1WXR A;  4YEL A;  1O8I A;  2NST A;  2V5I A;  3GQ7 A;  1DBG A;  2IQ7 A;  1QQ1 A;  4I84 A;  4NK6 A;  4PMH A;  4XN3 A;  4XON A;  2NTB A;  4V02 C;  3B8Y A;  1EZG A;  1XG2 A;  1OOC A;  4U4B A;  2QX3 A;  3N90 A;  2X3H A;  2NTQ A;  1OGO X;  1OFD A;  2XTX A;  2EWE A;  3DU1 X;  1K8F A;  3BH7 B;  2INV A;  1AIR A;  4XOT A;  1LLW A;  4XOR A;  2VFP A;  4YDT A;  2O6W A;  1OGM X;  3LMW A;  2QY1 A;  2J8I A;  2G0Y A;  3N6Z A;  2YUH A;  2VJJ A;  1LLZ A;  2BM5 A;  3SZE A;  2XT2 A;  1OFL A;  4YFO A;  1O8G A;  1KTW A;  2IOU G;  1CZF A;  2QZA A;  1CLW A;  2F3L A;  1QRB A;  3H09 A;  4YCQ A;  2XC1 A;  1DBO A;  4XNF A;  5DNS A;  4AVZ A;  4NK8 A;  1VBL A;  4OM9 A;  4XLE A; 
#chains in the Genus database with same CATH homology
 2NZM A;  4C2L A;  1PXZ A;  2UVF A;  1O8M A;  3GQ8 A;  4EW9 A;  4YZ0 A;  1BN8 A;  4YZQ A;  1GQ8 A;  1O88 A;  1BHE A;  4W8T A;  1X0C A;  4YZX A;  1K5C A;  3GQ9 A;  4OJ5 A;  4XKW A;  2VBK A;  4XLF A;  5C1E A;  1JRG A;  1RMG A;  4OZZ A;  4XLA A;  1IDJ A;  4XR6 A;  4W8R A;  1O8E A;  2PYH A;  4XLH A;  3VSV A;  1O8L A;  2BSP A;  4OJP A;  4Z06 A;  1IB4 A;  1O8H A;  2O0W A;  4W8S A;  4OZY A;  1OFM A;  2VBE A;  1RWR A;  4HWV A;  1RU4 A;  1KCC A;  2X6Y A;  3KRG A;  4XOP A;  1IA5 A;  2INU A;  3GRH A;  5AMV A;  2UVE A;  3B4N A;  2PYG A;  1O8F A;  4Z03 A;  4XL9 A;  4Z05 A;  1O8D A;  4OJL A;  2O17 A;  2ODL A;  4XLC A;  3ZPP A;  1NHC A;  1EE6 A;  3EQO A;  2O0V A;  4YZA A;  2O04 A;  3SUC A;  3VST A;  4OJO A;  4XMY A;  1PE9 A;  1WMR A;  2X85 A;  4U49 A;  2NT9 A;  1H80 A;  3GQA A;  4URR A;  3VMW A;  2X6W A;  1PLU A;  3FY3 A;  4XM3 A;  1QCX A;  2O1D A;  2PEC A;  1IDK A;  3EQN A;  4YEJ A;  1O8J A;  3UW0 A;  3WWG A;  1JTA A;  4XKV A;  3ZSC A;  2VBM A;  4OJ6 A;  2NSP A;  4XQF A;  4W8Q A;  3VMV A;  2QXZ A;  2NTP A;  1QJV A;  5C1C A;  1HG8 A;  1O8K A;  4MXN A;  3VSU A;  2NT6 A;  4XN0 A;  3B90 A;  2X6X A;  4MR0 A;  2Z8G A;  2VJI A;  3T9G A;  1KCD A;  3JUR A;  4YEL A;  1O8I A;  2NST A;  4I84 A;  3GQ7 A;  1DBG A;  2IQ7 A;  4NK6 A;  4PMH A;  4XN3 A;  4XON A;  2NTB A;  3B8Y A;  1XG2 A;  1OOC A;  4U4B A;  2QX3 A;  2X3H A;  2NTQ A;  1OGO X;  2EWE A;  4XOR A;  2INV A;  1AIR A;  4XOT A;  1OGM X;  3LMW A;  2QY1 A;  2VJJ A;  1OFL A;  1O8G A;  1KTW A;  1CZF A;  4XNF A;  1DBO A;  4AVZ A;  4NK8 A;  1VBL A;  4XLE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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