1KTWA

Iota-carrageenase complexed to iota-carrageenan fragments
Total Genus 166
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
166
sequence length
464
structure length
457
Chain Sequence
VSPKTYKDADFYVAPTQQDVNYDLVDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTYHFLGIQMKSNVHIRVESDVIIKPTWNGDGKNHRLFEVGVNNIVRNFSFQGLGNGFLVDFKDSRDKNLAVFKLGDVRNYKISNFTIDDNKTIFASILVDVTERNGRLHWSRNGIIERIKQNNALFGYGLIQTYGADNILFRNLHSEGGIALRMETDNLLMKNYKQGGIRNIFADNIRCSKGLAAVMFGPHFMKNGDVQVTNVSSVSCGSAVRSDSGFVELFSPTDEVHTRQSWKQAVESKLGRGCAQTPYAWAARVTQKDACLDKAKLEYGIEPGSFGTVKVFDVTARFGYNADLKQDQLDYFSTSNPMCKRVCLPTKEQWSKQGQIYIGPSLAAVIDTTPETSKYDYDVKTFNVKRINFPVNSHKTIDTNTESSRVCNYYGMSECSSSRWER
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords IOTA-CARRAGEENASE
publication title The Structural Bases of the Processive Degradation of iota-Carrageenan, a Main Cell Wall Polysaccharide of Red Algae.
pubmed doi rcsb
source organism Alteromonas sp. atcc 43554
total genus 166
structure length 457
sequence length 464
chains with identical sequence B
ec nomenclature ec 3.2.1.157: Iota-carrageenase.
pdb deposition date 2002-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12708 Pectate_lyase_3 Pectate lyase superfamily protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1ktwA00
4OZYA 4XLCA 4U4BA 1EE6A 1K5CA 2VBEA 1RWRA 3GQAA 4XR6A 2VJJA 1KTWA 1HG8A 2QXZA 4YZ0A 4OJ5A 1H80A 1OFMA 3ZSCA 4YEJA 4Z03A 1NHCA 4PMHA 4XL9A 4XM3A 2UVEA 4YZAA 1CZFA 2Z8GA 1O8LA 2O17A 1PLUA 2QX3A 1O8IA 2O0WA 1XG2A 1VBLA 4XQFA 2INUA 4U49A 3VSUA 2X85A 4XN0A 1OOCA 4EW9A 1O8JA 4XMYA 2NSTA 5C1EA 2UVFA 1IB4A 2X6YA 3B90A 2NSPA 4NK6A 4OZZA 3SUCA 4OJLA 4YELA 3B4NA 1O8HA 4Z06A 1WMRA 2NTBA 4HWVA 3UW0A 2X6XA 4W8SA 1OGMX 1IDKA 2NT9A 4OJOA 3EQNA 1RMGA 3FY3A 4YZXA 4AVZA 4URRA 1IA5A 4MXNA 4XN3A 2O04A 3WWGA 1KCDA 1X0CA 1O88A 3GRHA 2INVA 4XOTA 1KCCA 3GQ7A 1BN8A 1O8EA 3ZPPA 4W8QA 4XLAA 2PECA 1AIRA 4C2LA 1BHEA 1OFLA 2NTPA 4XLHA 3GQ8A 4XORA 4OJ6A 1O8MA 4NK8A 1OGOX 3VMWA 3VMVA 1PXZA 2NT6A 4XKWA 1PE9A 4OJPA 2PYGA 4I84A 2VBMA 1GQ8A 2X6WA 4XONA 4YZQA 3VSVA 2EWEA 2ODLA 1DBGA 4MR0A 3LMWA 1IDJA 4W8TA 3VSTA 1QCXA 4XNFA 4XLFA 1JRGA 1O8DA 2PYHA 1O8GA 3EQOA 3JURA 3GQ9A 3T9GA 3B8YA 1O8FA 5AMVA 2NZMA 2VBKA 4W8RA 4XKVA 2X3HA 5C1CA 2O1DA 1O8KA 1RU4A 2BSPA 3KRGA 4Z05A 1DBOA 2IQ7A 2NTQA 4XLEA 1JTAA 2O0VA 1QJVA 2QY1A 4XOPA 2VJIA
chains in the Genus database with same CATH superfamily
4OZYA 3JX8A 1QRCA 2G0YA 4XLCA 4U4BA 1EE6A 1K5CA 2VBEA 3AK5A 1RWRA 3GQAA 1QA3A 4XR6A 2VJJA 2BM7A 1HG8A 1KTWA 2QXZA 2XTXA 4YZ0A 1EZGA 1H80A 1OFMA 2BM5A 4OJ5A 3BH7B 3ZSCA 4YEJA 4Z03A 3RIQA 4PMHA 1NHCA 4XL9A 4XM3A 2UVEA 4YZAA 1CZFA 2Z8GA 2IOUG 1O8LA 2O17A 1PLUA 2QX3A 1OFDA 1L1IA 1O8IA 1QQ1A 3LJYA 3PETA 2O0WA 1XG2A 1QA2A 2XTWA 1VBLA 4XQFA 2INUA 4U49A 3PSSA 3VSUA 2X85A 4XN0A 1K8FA 1OOCA 4EW9A 1O8JA 4XMYA 3ML3A 2NSTA 5C1EA 2UVFA 1IB4A 1TSPA 1HF2A 2X6YA 3B90A 3P4GA 5JLVC 2NSPA 2VJIA 4NK6A 3NB2A 4OZZA 1LLWA 3SYJA 3SUCA 2BM4A 4OJLA 4YELA 3B4NA 1O8HA 4KH3A 4Z06A 1WMRA 4JRAC 2NTBA 4HWVA 5DNSA 1TYWA 4V02C 3TH0A 3UW0A 2X6XA 3LYCA 1OGMX 1IDKA 4W8SA 2NT9A 1K4ZA 2VFQA 1KQ5A 1RMGA 3EQNA 3FY3A 4OJOA 4YZXA 4URRA 4AVZA 1IA5A 3PSZA 4MXNA 4XN3A 2O04A 3WWGA 1KCDA 1X0CA 1QRBA 1O88A 2J8IA 3GRHA 1EA0A 2INVA 4XOTA 1LM1A 3SQVA 2QYUA 3H09A 1KCCA 3GQ7A 1BN8A 3N90A 1O8EA 3ZPPA 4W8QA 4XLAA 2F3LA 1WXRA 2PECA 1AIRA 4C2LA 1BHEA 1DABA 3NAWA 4YCQA 1OFLA 2NTPA 4OPWA 1OFEA 2BX6A 3GQ8A 4XLHA 4OJ6A 4XORA 1O8MA 3SY2A 4NK8A 1OGOX 3VMWA 3VMVA 2O6WA 1PXZA 3SZEA 2YUHA 1TYXA 2NT6A 4XKWA 1PE9A 1QA1A 4OJPA 1TYVA 2PYGA 2VFOA 4I84A 4YFOA 2QZAA 2VBMA 1GQ8A 2X6WA 4XONA 4YZQA 3VSVA 2EWEA 2W7ZA 1LLZA 1DBGA 2ODLA 4MR0A 3LMWA 1IDJA 4W8TA 2J8KA 1QCXA 3VSTA 4XNFA 4XLFA 1JRGA 1O8DA 3BH6B 2PYHA 1O8GA 3EQOA 5JMCB 2V5IA 3JURA 3GQ9A 2VFNA 3T9GA 4YDTA 2VFPA 2BM6A 3DU1X 4OM9A 3B8YA 1O8FA 5AMVA 2XT2A 2NZMA 2VFMA 2VBKA 4W8RA 4YC5A 4XKVA 2X3HA 4Z05A 1TYUA 2B0RA 1CLWA 2O1DA 3N6ZA 5C1CA 2BSPA 1O8KA 1RU4A 2XTYA 3KRGA 2XT4A 1DBOA 2IQ7A 2NTQA 4XLEA 1JTAA 1QJVA 2XC1A 2QY1A 4XOPA 4YEIA 2O0VA
chains in the Genus database with same CATH topology
4OZYA 4XLCA 4U4BA 1EE6A 1K5CA 2VBEA 1RWRA 3GQAA 4XR6A 2VJJA 1KTWA 1HG8A 2QXZA 4YZ0A 4OJ5A 1H80A 1OFMA 3ZSCA 4YEJA 4Z03A 1NHCA 4PMHA 4XL9A 4XM3A 2UVEA 4YZAA 1CZFA 2Z8GA 1O8LA 2O17A 1PLUA 2QX3A 1O8IA 2O0WA 1XG2A 1VBLA 4XQFA 2INUA 4U49A 3VSUA 2X85A 4XN0A 1OOCA 4EW9A 1O8JA 4XMYA 2NSTA 5C1EA 2UVFA 1IB4A 2X6YA 3B90A 2NSPA 4NK6A 4OZZA 3SUCA 4OJLA 4YELA 3B4NA 1O8HA 4Z06A 1WMRA 2NTBA 4HWVA 3UW0A 2X6XA 4W8SA 1OGMX 1IDKA 2NT9A 4OJOA 3EQNA 1RMGA 3FY3A 4YZXA 4AVZA 4URRA 1IA5A 4MXNA 4XN3A 2O04A 3WWGA 1KCDA 1X0CA 1O88A 3GRHA 2INVA 4XOTA 1KCCA 3GQ7A 1BN8A 1O8EA 3ZPPA 4W8QA 4XLAA 2PECA 1AIRA 4C2LA 1BHEA 1OFLA 2NTPA 4XLHA 3GQ8A 4XORA 4OJ6A 1O8MA 4NK8A 1OGOX 3VMWA 3VMVA 1PXZA 2NT6A 4XKWA 1PE9A 4OJPA 2PYGA 4I84A 2VBMA 1GQ8A 2X6WA 4XONA 4YZQA 3VSVA 2EWEA 2ODLA 1DBGA 4MR0A 3LMWA 1IDJA 4W8TA 3VSTA 1QCXA 4XNFA 4XLFA 1JRGA 1O8DA 2PYHA 1O8GA 3EQOA 3JURA 3GQ9A 3T9GA 3B8YA 1O8FA 5AMVA 2NZMA 2VBKA 4W8RA 4XKVA 2X3HA 5C1CA 2O1DA 1O8KA 1RU4A 2BSPA 3KRGA 4Z05A 1DBOA 2IQ7A 2NTQA 4XLEA 1JTAA 2O0VA 1QJVA 2QY1A 4XOPA 2VJIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OZY A;  4XLC A;  4U4B A;  1EE6 A;  1K5C A;  2VBE A;  1RWR A;  3GQA A;  4XR6 A;  2VJJ A;  1KTW A;  1HG8 A;  2QXZ A;  4YZ0 A;  4OJ5 A;  1H80 A;  1OFM A;  3ZSC A;  4YEJ A;  4Z03 A;  1NHC A;  4PMH A;  4XL9 A;  4XM3 A;  2UVE A;  4YZA A;  1CZF A;  2Z8G A;  1O8L A;  2O17 A;  1PLU A;  2QX3 A;  1O8I A;  2O0W A;  1XG2 A;  1VBL A;  4XQF A;  2INU A;  4U49 A;  3VSU A;  2X85 A;  4XN0 A;  1OOC A;  4EW9 A;  1O8J A;  4XMY A;  2NST A;  5C1E A;  2UVF A;  1IB4 A;  2X6Y A;  3B90 A;  2NSP A;  4NK6 A;  4OZZ A;  3SUC A;  4OJL A;  4YEL A;  3B4N A;  1O8H A;  4Z06 A;  1WMR A;  2NTB A;  4HWV A;  3UW0 A;  2X6X A;  4W8S A;  1OGM X;  1IDK A;  2NT9 A;  4OJO A;  3EQN A;  1RMG A;  3FY3 A;  4YZX A;  4AVZ A;  4URR A;  1IA5 A;  4MXN A;  4XN3 A;  2O04 A;  3WWG A;  1KCD A;  1X0C A;  1O88 A;  3GRH A;  2INV A;  4XOT A;  1KCC A;  3GQ7 A;  1BN8 A;  1O8E A;  3ZPP A;  4W8Q A;  4XLA A;  2PEC A;  1AIR A;  4C2L A;  1BHE A;  1OFL A;  2NTP A;  4XLH A;  3GQ8 A;  4XOR A;  4OJ6 A;  1O8M A;  4NK8 A;  1OGO X;  3VMW A;  3VMV A;  1PXZ A;  2NT6 A;  4XKW A;  1PE9 A;  4OJP A;  2PYG A;  4I84 A;  2VBM A;  1GQ8 A;  2X6W A;  4XON A;  4YZQ A;  3VSV A;  2EWE A;  2ODL A;  1DBG A;  4MR0 A;  3LMW A;  1IDJ A;  4W8T A;  3VST A;  1QCX A;  4XNF A;  4XLF A;  1JRG A;  1O8D A;  2PYH A;  1O8G A;  3EQO A;  3JUR A;  3GQ9 A;  3T9G A;  3B8Y A;  1O8F A;  5AMV A;  2NZM A;  2VBK A;  4W8R A;  4XKV A;  2X3H A;  5C1C A;  2O1D A;  1O8K A;  1RU4 A;  2BSP A;  3KRG A;  4Z05 A;  1DBO A;  2IQ7 A;  2NTQ A;  4XLE A;  1JTA A;  2O0V A;  1QJV A;  2QY1 A;  4XOP A;  2VJI A; 
#chains in the Genus database with same CATH topology
 4OZY A;  3JX8 A;  1QRC A;  2G0Y A;  4XLC A;  4U4B A;  1EE6 A;  1K5C A;  2VBE A;  3AK5 A;  1RWR A;  3GQA A;  1QA3 A;  4XR6 A;  2VJJ A;  2BM7 A;  1HG8 A;  1KTW A;  2QXZ A;  2XTX A;  4YZ0 A;  1EZG A;  1H80 A;  1OFM A;  2BM5 A;  4OJ5 A;  3BH7 B;  3ZSC A;  4YEJ A;  4Z03 A;  3RIQ A;  4PMH A;  1NHC A;  4XL9 A;  4XM3 A;  2UVE A;  4YZA A;  1CZF A;  2Z8G A;  2IOU G;  1O8L A;  2O17 A;  1PLU A;  2QX3 A;  1OFD A;  1L1I A;  1O8I A;  1QQ1 A;  3LJY A;  3PET A;  2O0W A;  1XG2 A;  1QA2 A;  2XTW A;  1VBL A;  4XQF A;  2INU A;  4U49 A;  3PSS A;  3VSU A;  2X85 A;  4XN0 A;  1K8F A;  1OOC A;  4EW9 A;  1O8J A;  4XMY A;  3ML3 A;  2NST A;  5C1E A;  2UVF A;  1IB4 A;  1TSP A;  1HF2 A;  2X6Y A;  3B90 A;  3P4G A;  5JLV C;  2NSP A;  2VJI A;  4NK6 A;  3NB2 A;  4OZZ A;  1LLW A;  3SYJ A;  3SUC A;  2BM4 A;  4OJL A;  4YEL A;  3B4N A;  1O8H A;  4KH3 A;  4Z06 A;  1WMR A;  4JRA C;  2NTB A;  4HWV A;  5DNS A;  1TYW A;  4V02 C;  3TH0 A;  3UW0 A;  2X6X A;  3LYC A;  1OGM X;  1IDK A;  4W8S A;  2NT9 A;  1K4Z A;  2VFQ A;  1KQ5 A;  1RMG A;  3EQN A;  3FY3 A;  4OJO A;  4YZX A;  4URR A;  4AVZ A;  1IA5 A;  3PSZ A;  4MXN A;  4XN3 A;  2O04 A;  3WWG A;  1KCD A;  1X0C A;  1QRB A;  1O88 A;  2J8I A;  3GRH A;  1EA0 A;  2INV A;  4XOT A;  1LM1 A;  3SQV A;  2QYU A;  3H09 A;  1KCC A;  3GQ7 A;  1BN8 A;  3N90 A;  1O8E A;  3ZPP A;  4W8Q A;  4XLA A;  2F3L A;  1WXR A;  2PEC A;  1AIR A;  4C2L A;  1BHE A;  1DAB A;  3NAW A;  4YCQ A;  1OFL A;  2NTP A;  4OPW A;  1OFE A;  2BX6 A;  3GQ8 A;  4XLH A;  4OJ6 A;  4XOR A;  1O8M A;  3SY2 A;  4NK8 A;  1OGO X;  3VMW A;  3VMV A;  2O6W A;  1PXZ A;  3SZE A;  2YUH A;  1TYX A;  2NT6 A;  4XKW A;  1PE9 A;  1QA1 A;  4OJP A;  1TYV A;  2PYG A;  2VFO A;  4I84 A;  4YFO A;  2QZA A;  2VBM A;  1GQ8 A;  2X6W A;  4XON A;  4YZQ A;  3VSV A;  2EWE A;  2W7Z A;  1LLZ A;  1DBG A;  2ODL A;  4MR0 A;  3LMW A;  1IDJ A;  4W8T A;  2J8K A;  1QCX A;  3VST A;  4XNF A;  4XLF A;  1JRG A;  1O8D A;  3BH6 B;  2PYH A;  1O8G A;  3EQO A;  5JMC B;  2V5I A;  3JUR A;  3GQ9 A;  2VFN A;  3T9G A;  4YDT A;  2VFP A;  2BM6 A;  3DU1 X;  4OM9 A;  3B8Y A;  1O8F A;  5AMV A;  2XT2 A;  2NZM A;  2VFM A;  2VBK A;  4W8R A;  4YC5 A;  4XKV A;  2X3H A;  4Z05 A;  1TYU A;  2B0R A;  1CLW A;  2O1D A;  3N6Z A;  5C1C A;  2BSP A;  1O8K A;  1RU4 A;  2XTY A;  3KRG A;  2XT4 A;  1DBO A;  2IQ7 A;  2NTQ A;  4XLE A;  1JTA A;  1QJV A;  2XC1 A;  2QY1 A;  4XOP A;  4YEI A;  2O0V A; 
#chains in the Genus database with same CATH homology
 4OZY A;  4XLC A;  4U4B A;  1EE6 A;  1K5C A;  2VBE A;  1RWR A;  3GQA A;  4XR6 A;  2VJJ A;  1KTW A;  1HG8 A;  2QXZ A;  4YZ0 A;  4OJ5 A;  1H80 A;  1OFM A;  3ZSC A;  4YEJ A;  4Z03 A;  1NHC A;  4PMH A;  4XL9 A;  4XM3 A;  2UVE A;  4YZA A;  1CZF A;  2Z8G A;  1O8L A;  2O17 A;  1PLU A;  2QX3 A;  1O8I A;  2O0W A;  1XG2 A;  1VBL A;  4XQF A;  2INU A;  4U49 A;  3VSU A;  2X85 A;  4XN0 A;  1OOC A;  4EW9 A;  1O8J A;  4XMY A;  2NST A;  5C1E A;  2UVF A;  1IB4 A;  2X6Y A;  3B90 A;  2NSP A;  4NK6 A;  4OZZ A;  3SUC A;  4OJL A;  4YEL A;  3B4N A;  1O8H A;  4Z06 A;  1WMR A;  2NTB A;  4HWV A;  3UW0 A;  2X6X A;  4W8S A;  1OGM X;  1IDK A;  2NT9 A;  4OJO A;  3EQN A;  1RMG A;  3FY3 A;  4YZX A;  4AVZ A;  4URR A;  1IA5 A;  4MXN A;  4XN3 A;  2O04 A;  3WWG A;  1KCD A;  1X0C A;  1O88 A;  3GRH A;  2INV A;  4XOT A;  1KCC A;  3GQ7 A;  1BN8 A;  1O8E A;  3ZPP A;  4W8Q A;  4XLA A;  2PEC A;  1AIR A;  4C2L A;  1BHE A;  1OFL A;  2NTP A;  4XLH A;  3GQ8 A;  4XOR A;  4OJ6 A;  1O8M A;  4NK8 A;  1OGO X;  3VMW A;  3VMV A;  1PXZ A;  2NT6 A;  4XKW A;  1PE9 A;  4OJP A;  2PYG A;  4I84 A;  2VBM A;  1GQ8 A;  2X6W A;  4XON A;  4YZQ A;  3VSV A;  2EWE A;  2ODL A;  1DBG A;  4MR0 A;  3LMW A;  1IDJ A;  4W8T A;  3VST A;  1QCX A;  4XNF A;  4XLF A;  1JRG A;  1O8D A;  2PYH A;  1O8G A;  3EQO A;  3JUR A;  3GQ9 A;  3T9G A;  3B8Y A;  1O8F A;  5AMV A;  2NZM A;  2VBK A;  4W8R A;  4XKV A;  2X3H A;  5C1C A;  2O1D A;  1O8K A;  1RU4 A;  2BSP A;  3KRG A;  4Z05 A;  1DBO A;  2IQ7 A;  2NTQ A;  4XLE A;  1JTA A;  2O0V A;  1QJV A;  2QY1 A;  4XOP A;  2VJI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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