1OOCA

Mutations in the t1.5 loop of pectate lyase a
Total Genus 130
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
130
sequence length
361
structure length
361
Chain Sequence
AELVSDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNGSIFSDNGSVLNGSAVDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSGKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
molecule keywords Pectate lyase A
publication title Effect of mutations in the T1.5 loop of pectate lyase A from Erwinia chrysanthemi EC16.
pubmed doi rcsb
source organism Erwinia chrysanthemi
total genus 130
structure length 361
sequence length 361
chains with identical sequence B
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2003-03-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1oocA00
4XLHA 4OJLA 1O8JA 4HWVA 2X6YA 4XLAA 1OFLA 1O8EA 2O0WA 3KRGA 2ODLA 2PECA 1K5CA 4XM3A 2INVA 1DBGA 4U4BA 1IDJA 2VJJA 4MXNA 4XR6A 1O8MA 2UVFA 1PE9A 5C1CA 3B4NA 2UVEA 4W8TA 1PLUA 1VBLA 4NK8A 4XNFA 4EW9A 2X6XA 4YZAA 4Z05A 1QJVA 2NT6A 3EQNA 1O8IA 1OGOX 1IB4A 2NT9A 3B8YA 4OJPA 1RMGA 3JURA 2QY1A 1O88A 2QXZA 3GQ9A 4OZZA 4PMHA 4MR0A 4W8RA 1O8LA 2PYHA 4XORA 4XOPA 2O04A 4YEJA 1KTWA 1JRGA 2QX3A 3EQOA 1PXZA 1BHEA 3T9GA 2VBMA 4I84A 3LMWA 1O8FA 3B90A 4XLFA 1DBOA 1OOCA 2NTQA 3FY3A 4XKWA 2NSTA 4W8SA 2NTBA 1O8DA 4U49A 1XG2A 3GRHA 2O1DA 2PYGA 1RWRA 3VSUA 3VSVA 4YZXA 2X6WA 3VMWA 4Z06A 2X3HA 1OGMX 2O17A 4NK6A 1O8HA 3SUCA 4XLCA 5C1EA 2VBKA 2VBEA 4XMYA 3WWGA 1WMRA 3ZSCA 1NHCA 4XQFA 4OZYA 4C2LA 2EWEA 4OJOA 4AVZA 3VMVA 1IA5A 4XN0A 4YZ0A 4YELA 1H80A 3GQAA 4XOTA 4Z03A 4XLEA 1AIRA 1EE6A 3GQ8A 3GQ7A 1OFMA 1KCCA 4XKVA 4URRA 4XONA 3UW0A 2NSPA 2NTPA 3ZPPA 1O8GA 4XN3A 1X0CA 1GQ8A 1QCXA 4YZQA 4OJ5A 1O8KA 2VJIA 2Z8GA 2INUA 4OJ6A 1HG8A 1JTAA 1KCDA 4XL9A 2IQ7A 2O0VA 2X85A 4W8QA 3VSTA 1BN8A 1CZFA 1RU4A 2BSPA 1IDKA 5AMVA 2NZMA
chains in the Genus database with same CATH superfamily
4XLHA 4OJLA 1L1IA 1O8JA 1QQ1A 3N90A 4HWVA 2X6YA 5DNSA 4XLAA 1OFLA 1O8EA 2O0WA 3KRGA 2ODLA 2PECA 1K5CA 4XM3A 1EA0A 2INVA 1DBGA 3LYCA 4U4BA 1IDJA 3DU1X 2VJJA 1LLWA 4MXNA 2XT2A 2XC1A 3H09A 4XR6A 1O8MA 3SQVA 2UVFA 1PE9A 5C1CA 2QYUA 2UVEA 3B4NA 1PLUA 1VBLA 4NK8A 4W8TA 4XNFA 4YC5A 2X6XA 4EW9A 4YZAA 4Z05A 1QJVA 2NT6A 3EQNA 1O8IA 1OGOX 1TYVA 4YCQA 2NT9A 1K4ZA 3B8YA 1HF2A 1IB4A 1WXRA 2BM7A 1RMGA 3JURA 2QY1A 1O88A 2QXZA 3GQ9A 4OZZA 4OJPA 4MR0A 4PMHA 2F3LA 2G0YA 4W8RA 4OM9A 1QA3A 1O8LA 5JLVC 2PYHA 4JRAC 4XORA 4XOPA 2O04A 1TSPA 4YEJA 2BM6A 1KTWA 1JRGA 2QX3A 3BH7B 3EQOA 1PXZA 3P4GA 1BHEA 3T9GA 3SZEA 2VBMA 4I84A 3SYJA 4YEIA 1K8FA 3LMWA 1O8FA 3B90A 4XLFA 1DBOA 1OOCA 2NTQA 2VFPA 2XTYA 2NSTA 3FY3A 4W8SA 4XKWA 3BH6B 4YFOA 2NTBA 1O8DA 3ML3A 4U49A 1XG2A 3TH0A 3GRHA 2O1DA 1TYXA 2PYGA 1RWRA 3VSUA 2VFQA 3VSVA 1DABA 1QA2A 4KH3A 4YZXA 2X6WA 3VMWA 4YDTA 4Z06A 2X3HA 1OGMX 2O17A 1TYUA 1EZGA 3NAWA 1LM1A 1O8HA 4NK6A 3SUCA 1TYWA 4XLCA 5C1EA 2VBKA 2VBEA 4XMYA 1LLZA 4OPWA 1OFDA 1CLWA 3PSSA 3WWGA 1WMRA 2VFMA 3ZSCA 1NHCA 2B0RA 4XQFA 2J8IA 4OZYA 3PETA 3AK5A 1QA1A 4C2LA 2EWEA 4OJOA 4AVZA 3VMVA 1IA5A 1KQ5A 3N6ZA 2J8KA 4XN0A 4YZ0A 4YELA 2BM4A 2XTWA 1H80A 3GQAA 4XOTA 1QRCA 2XT4A 4V02C 4Z03A 4XLEA 2VFNA 3JX8A 2QZAA 2BM5A 1AIRA 1EE6A 2XTXA 3GQ8A 3GQ7A 1OFMA 1KCCA 3PSZA 4URRA 4XKVA 4XONA 3UW0A 1QRBA 2NSPA 2NTPA 2VFOA 3ZPPA 1O8GA 4XN3A 1X0CA 1GQ8A 2IOUG 1QCXA 4YZQA 4OJ5A 1O8KA 3SY2A 2YUHA 3NB2A 3RIQA 2W7ZA 2VJIA 2Z8GA 2INUA 4OJ6A 1HG8A 2O6WA 1JTAA 1KCDA 4XL9A 2IQ7A 5JMCB 2O0VA 2X85A 4W8QA 2BX6A 3VSTA 1BN8A 1CZFA 1RU4A 2BSPA 2V5IA 1IDKA 1OFEA 3LJYA 5AMVA 2NZMA
chains in the Genus database with same CATH topology
4XLHA 4OJLA 1O8JA 4HWVA 2X6YA 4XLAA 1OFLA 1O8EA 2O0WA 3KRGA 2ODLA 2PECA 1K5CA 4XM3A 2INVA 1DBGA 4U4BA 1IDJA 2VJJA 4MXNA 4XR6A 1O8MA 2UVFA 1PE9A 5C1CA 3B4NA 2UVEA 4W8TA 1PLUA 1VBLA 4NK8A 4XNFA 4EW9A 2X6XA 4YZAA 4Z05A 1QJVA 2NT6A 3EQNA 1O8IA 1OGOX 1IB4A 2NT9A 3B8YA 4OJPA 1RMGA 3JURA 2QY1A 1O88A 2QXZA 3GQ9A 4OZZA 4PMHA 4MR0A 4W8RA 1O8LA 2PYHA 4XORA 4XOPA 2O04A 4YEJA 1KTWA 1JRGA 2QX3A 3EQOA 1PXZA 1BHEA 3T9GA 2VBMA 4I84A 3LMWA 1O8FA 3B90A 4XLFA 1DBOA 1OOCA 2NTQA 3FY3A 4XKWA 2NSTA 4W8SA 2NTBA 1O8DA 4U49A 1XG2A 3GRHA 2O1DA 2PYGA 1RWRA 3VSUA 3VSVA 4YZXA 2X6WA 3VMWA 4Z06A 2X3HA 1OGMX 2O17A 4NK6A 1O8HA 3SUCA 4XLCA 5C1EA 2VBKA 2VBEA 4XMYA 3WWGA 1WMRA 3ZSCA 1NHCA 4XQFA 4OZYA 4C2LA 2EWEA 4OJOA 4AVZA 3VMVA 1IA5A 4XN0A 4YZ0A 4YELA 1H80A 3GQAA 4XOTA 4Z03A 4XLEA 1AIRA 1EE6A 3GQ8A 3GQ7A 1OFMA 1KCCA 4XKVA 4URRA 4XONA 3UW0A 2NSPA 2NTPA 3ZPPA 1O8GA 4XN3A 1X0CA 1GQ8A 1QCXA 4YZQA 4OJ5A 1O8KA 2VJIA 2Z8GA 2INUA 4OJ6A 1HG8A 1JTAA 1KCDA 4XL9A 2IQ7A 2O0VA 2X85A 4W8QA 3VSTA 1BN8A 1CZFA 1RU4A 2BSPA 1IDKA 5AMVA 2NZMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XLH A;  4OJL A;  1O8J A;  4HWV A;  2X6Y A;  4XLA A;  1OFL A;  1O8E A;  2O0W A;  3KRG A;  2ODL A;  2PEC A;  1K5C A;  4XM3 A;  2INV A;  1DBG A;  4U4B A;  1IDJ A;  2VJJ A;  4MXN A;  4XR6 A;  1O8M A;  2UVF A;  1PE9 A;  5C1C A;  3B4N A;  2UVE A;  4W8T A;  1PLU A;  1VBL A;  4NK8 A;  4XNF A;  4EW9 A;  2X6X A;  4YZA A;  4Z05 A;  1QJV A;  2NT6 A;  3EQN A;  1O8I A;  1OGO X;  1IB4 A;  2NT9 A;  3B8Y A;  4OJP A;  1RMG A;  3JUR A;  2QY1 A;  1O88 A;  2QXZ A;  3GQ9 A;  4OZZ A;  4PMH A;  4MR0 A;  4W8R A;  1O8L A;  2PYH A;  4XOR A;  4XOP A;  2O04 A;  4YEJ A;  1KTW A;  1JRG A;  2QX3 A;  3EQO A;  1PXZ A;  1BHE A;  3T9G A;  2VBM A;  4I84 A;  3LMW A;  1O8F A;  3B90 A;  4XLF A;  1DBO A;  1OOC A;  2NTQ A;  3FY3 A;  4XKW A;  2NST A;  4W8S A;  2NTB A;  1O8D A;  4U49 A;  1XG2 A;  3GRH A;  2O1D A;  2PYG A;  1RWR A;  3VSU A;  3VSV A;  4YZX A;  2X6W A;  3VMW A;  4Z06 A;  2X3H A;  1OGM X;  2O17 A;  4NK6 A;  1O8H A;  3SUC A;  4XLC A;  5C1E A;  2VBK A;  2VBE A;  4XMY A;  3WWG A;  1WMR A;  3ZSC A;  1NHC A;  4XQF A;  4OZY A;  4C2L A;  2EWE A;  4OJO A;  4AVZ A;  3VMV A;  1IA5 A;  4XN0 A;  4YZ0 A;  4YEL A;  1H80 A;  3GQA A;  4XOT A;  4Z03 A;  4XLE A;  1AIR A;  1EE6 A;  3GQ8 A;  3GQ7 A;  1OFM A;  1KCC A;  4XKV A;  4URR A;  4XON A;  3UW0 A;  2NSP A;  2NTP A;  3ZPP A;  1O8G A;  4XN3 A;  1X0C A;  1GQ8 A;  1QCX A;  4YZQ A;  4OJ5 A;  1O8K A;  2VJI A;  2Z8G A;  2INU A;  4OJ6 A;  1HG8 A;  1JTA A;  1KCD A;  4XL9 A;  2IQ7 A;  2O0V A;  2X85 A;  4W8Q A;  3VST A;  1BN8 A;  1CZF A;  1RU4 A;  2BSP A;  1IDK A;  5AMV A;  2NZM A; 
#chains in the Genus database with same CATH topology
 4XLH A;  4OJL A;  1L1I A;  1O8J A;  1QQ1 A;  3N90 A;  4HWV A;  2X6Y A;  5DNS A;  4XLA A;  1OFL A;  1O8E A;  2O0W A;  3KRG A;  2ODL A;  2PEC A;  1K5C A;  4XM3 A;  1EA0 A;  2INV A;  1DBG A;  3LYC A;  4U4B A;  1IDJ A;  3DU1 X;  2VJJ A;  1LLW A;  4MXN A;  2XT2 A;  2XC1 A;  3H09 A;  4XR6 A;  1O8M A;  3SQV A;  2UVF A;  1PE9 A;  5C1C A;  2QYU A;  2UVE A;  3B4N A;  1PLU A;  1VBL A;  4NK8 A;  4W8T A;  4XNF A;  4YC5 A;  2X6X A;  4EW9 A;  4YZA A;  4Z05 A;  1QJV A;  2NT6 A;  3EQN A;  1O8I A;  1OGO X;  1TYV A;  4YCQ A;  2NT9 A;  1K4Z A;  3B8Y A;  1HF2 A;  1IB4 A;  1WXR A;  2BM7 A;  1RMG A;  3JUR A;  2QY1 A;  1O88 A;  2QXZ A;  3GQ9 A;  4OZZ A;  4OJP A;  4MR0 A;  4PMH A;  2F3L A;  2G0Y A;  4W8R A;  4OM9 A;  1QA3 A;  1O8L A;  5JLV C;  2PYH A;  4JRA C;  4XOR A;  4XOP A;  2O04 A;  1TSP A;  4YEJ A;  2BM6 A;  1KTW A;  1JRG A;  2QX3 A;  3BH7 B;  3EQO A;  1PXZ A;  3P4G A;  1BHE A;  3T9G A;  3SZE A;  2VBM A;  4I84 A;  3SYJ A;  4YEI A;  1K8F A;  3LMW A;  1O8F A;  3B90 A;  4XLF A;  1DBO A;  1OOC A;  2NTQ A;  2VFP A;  2XTY A;  2NST A;  3FY3 A;  4W8S A;  4XKW A;  3BH6 B;  4YFO A;  2NTB A;  1O8D A;  3ML3 A;  4U49 A;  1XG2 A;  3TH0 A;  3GRH A;  2O1D A;  1TYX A;  2PYG A;  1RWR A;  3VSU A;  2VFQ A;  3VSV A;  1DAB A;  1QA2 A;  4KH3 A;  4YZX A;  2X6W A;  3VMW A;  4YDT A;  4Z06 A;  2X3H A;  1OGM X;  2O17 A;  1TYU A;  1EZG A;  3NAW A;  1LM1 A;  1O8H A;  4NK6 A;  3SUC A;  1TYW A;  4XLC A;  5C1E A;  2VBK A;  2VBE A;  4XMY A;  1LLZ A;  4OPW A;  1OFD A;  1CLW A;  3PSS A;  3WWG A;  1WMR A;  2VFM A;  3ZSC A;  1NHC A;  2B0R A;  4XQF A;  2J8I A;  4OZY A;  3PET A;  3AK5 A;  1QA1 A;  4C2L A;  2EWE A;  4OJO A;  4AVZ A;  3VMV A;  1IA5 A;  1KQ5 A;  3N6Z A;  2J8K A;  4XN0 A;  4YZ0 A;  4YEL A;  2BM4 A;  2XTW A;  1H80 A;  3GQA A;  4XOT A;  1QRC A;  2XT4 A;  4V02 C;  4Z03 A;  4XLE A;  2VFN A;  3JX8 A;  2QZA A;  2BM5 A;  1AIR A;  1EE6 A;  2XTX A;  3GQ8 A;  3GQ7 A;  1OFM A;  1KCC A;  3PSZ A;  4URR A;  4XKV A;  4XON A;  3UW0 A;  1QRB A;  2NSP A;  2NTP A;  2VFO A;  3ZPP A;  1O8G A;  4XN3 A;  1X0C A;  1GQ8 A;  2IOU G;  1QCX A;  4YZQ A;  4OJ5 A;  1O8K A;  3SY2 A;  2YUH A;  3NB2 A;  3RIQ A;  2W7Z A;  2VJI A;  2Z8G A;  2INU A;  4OJ6 A;  1HG8 A;  2O6W A;  1JTA A;  1KCD A;  4XL9 A;  2IQ7 A;  5JMC B;  2O0V A;  2X85 A;  4W8Q A;  2BX6 A;  3VST A;  1BN8 A;  1CZF A;  1RU4 A;  2BSP A;  2V5I A;  1IDK A;  1OFE A;  3LJY A;  5AMV A;  2NZM A; 
#chains in the Genus database with same CATH homology
 4XLH A;  4OJL A;  1O8J A;  4HWV A;  2X6Y A;  4XLA A;  1OFL A;  1O8E A;  2O0W A;  3KRG A;  2ODL A;  2PEC A;  1K5C A;  4XM3 A;  2INV A;  1DBG A;  4U4B A;  1IDJ A;  2VJJ A;  4MXN A;  4XR6 A;  1O8M A;  2UVF A;  1PE9 A;  5C1C A;  3B4N A;  2UVE A;  4W8T A;  1PLU A;  1VBL A;  4NK8 A;  4XNF A;  4EW9 A;  2X6X A;  4YZA A;  4Z05 A;  1QJV A;  2NT6 A;  3EQN A;  1O8I A;  1OGO X;  1IB4 A;  2NT9 A;  3B8Y A;  4OJP A;  1RMG A;  3JUR A;  2QY1 A;  1O88 A;  2QXZ A;  3GQ9 A;  4OZZ A;  4PMH A;  4MR0 A;  4W8R A;  1O8L A;  2PYH A;  4XOR A;  4XOP A;  2O04 A;  4YEJ A;  1KTW A;  1JRG A;  2QX3 A;  3EQO A;  1PXZ A;  1BHE A;  3T9G A;  2VBM A;  4I84 A;  3LMW A;  1O8F A;  3B90 A;  4XLF A;  1DBO A;  1OOC A;  2NTQ A;  3FY3 A;  4XKW A;  2NST A;  4W8S A;  2NTB A;  1O8D A;  4U49 A;  1XG2 A;  3GRH A;  2O1D A;  2PYG A;  1RWR A;  3VSU A;  3VSV A;  4YZX A;  2X6W A;  3VMW A;  4Z06 A;  2X3H A;  1OGM X;  2O17 A;  4NK6 A;  1O8H A;  3SUC A;  4XLC A;  5C1E A;  2VBK A;  2VBE A;  4XMY A;  3WWG A;  1WMR A;  3ZSC A;  1NHC A;  4XQF A;  4OZY A;  4C2L A;  2EWE A;  4OJO A;  4AVZ A;  3VMV A;  1IA5 A;  4XN0 A;  4YZ0 A;  4YEL A;  1H80 A;  3GQA A;  4XOT A;  4Z03 A;  4XLE A;  1AIR A;  1EE6 A;  3GQ8 A;  3GQ7 A;  1OFM A;  1KCC A;  4XKV A;  4URR A;  4XON A;  3UW0 A;  2NSP A;  2NTP A;  3ZPP A;  1O8G A;  4XN3 A;  1X0C A;  1GQ8 A;  1QCX A;  4YZQ A;  4OJ5 A;  1O8K A;  2VJI A;  2Z8G A;  2INU A;  4OJ6 A;  1HG8 A;  1JTA A;  1KCD A;  4XL9 A;  2IQ7 A;  2O0V A;  2X85 A;  4W8Q A;  3VST A;  1BN8 A;  1CZF A;  1RU4 A;  2BSP A;  1IDK A;  5AMV A;  2NZM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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