1OOCA

Mutations in the t1.5 loop of pectate lyase a
Total Genus 130
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
130
sequence length
361
structure length
361
Chain Sequence
b'AELVSDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNGSIFSDNGSVLNGSAVDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSGKL'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pectate lyase A
publication title Effect of mutations in the T1.5 loop of pectate lyase A from Erwinia chrysanthemi EC16.
pubmed doi rcsb
source organism Erwinia chrysanthemi
molecule tags Lyase
total genus 130
structure length 361
sequence length 361
chains with identical sequence B
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2003-03-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1oocA00
4I84A 1KTWA 2X6WA 1O8MA 3GRHA 3T9GA 4W8SA 4OJ6A 5C1CA 4OJPA 1RWRA 2NT9A 1DBOA 1PE9A 4XN3A 3WWGA 4C2LA 1WMRA 5C1EA 2X6XA 2NSPA 1O8HA 4PMHA 4XQFA 2X3HA 2NTPA 1OFLA 1O8DA 2QXZA 1QCXA 1O8FA 4XKWA 4XLCA 4MXNA 4NK6A 1EE6A 2X6YA 4XKVA 4XR6A 1O8GA 4OJ5A 1JTAA 2INVA 4XOTA 2NZMA 4HWVA 4XLAA 2O04A 1OFMA 1O8EA 2VBKA 1OGOX 2UVEA 3VSVA 2NT6A 2O17A 1HG8A 3GQAA 4XOPA 3GQ8A 3GQ9A 4U49A 1CZFA 1IA5A 2O0WA 1KCCA 2O1DA 1H80A 1RMGA 1OOCA 4YELA 2IQ7A 2X85A 3FY3A 1X0CA 4YEJA 3JURA 3B4NA 3VMWA 4XLFA 4URRA 1KCDA 5AMVA 3LMWA 2NTBA 4EW9A 1JRGA 1O8LA 3B8YA 1IB4A 2ODLA 1NHCA 3VSTA 4Z03A 1OGMX 4YZXA 4MR0A 2PYHA 3UW0A 2VBMA 1AIRA 4YZQA 4Z05A 2UVFA 4W8QA 1BN8A 2Z8GA 3ZPPA 1GQ8A 2BSPA 4U4BA 4XLHA 4XM3A 3EQNA 4OJOA 1PXZA 4XL9A 4XLEA 2NSTA 3SUCA 3KRGA 1K5CA 4AVZA 1VBLA 1XG2A 2EWEA 1O88A 2NTQA 2INUA 3GQ7A 4XN0A 1IDKA 1RU4A 3EQOA 3ZSCA 2QY1A 2PYGA 2VJIA 2QX3A 4W8TA 3VMVA 3B90A 1QJVA 2O0VA 2VBEA 1BHEA 4XMYA 2VJJA 4OZYA 4YZ0A 1DBGA 3VSUA 4XNFA 4NK8A 4XONA 1O8JA 4OZZA 1O8IA 4YZAA 2PECA 4XORA 1PLUA 4Z06A 4OJLA 4W8RA 1O8KA 1IDJA
chains in the Genus database with same CATH superfamily
4I84A 1KTWA 2X6WA 1O8MA 4OPWA 3GRHA 2YUHA 3T9GA 4YDTA 4W8SA 3SYJA 4OJ6A 5C1CA 4OJPA 1TYWA 1RWRA 2NT9A 1LLWA 1QA1A 1QRBA 1DBOA 1PE9A 4XN3A 3WWGA 4C2LA 1EZGA 1WMRA 5C1EA 2X6XA 2NSPA 1O8HA 4PMHA 4XQFA 2X3HA 2NTPA 3JX8A 1OFLA 1O8DA 2QXZA 4YCQA 1QCXA 1O8FA 2VFOA 4XKWA 4XLCA 2J8KA 4MXNA 4NK6A 1EE6A 2X6YA 4XKVA 4XR6A 1O8GA 4OJ5A 3SY2A 1L1IA 1JTAA 2INVA 4XOTA 2NZMA 4HWVA 4XLAA 2O04A 2XT4A 1OFMA 1O8EA 1OFDA 2VBKA 1OGOX 2UVEA 3VSVA 2NT6A 2O17A 1HG8A 3GQAA 4XOPA 1K4ZA 2B0RA 3GQ8A 3GQ9A 4U49A 1CZFA 2G0YA 1IA5A 2O0WA 5JMCB 1KCCA 2W7ZA 2XTXA 2O1DA 2QZAA 1H80A 1RMGA 1OOCA 3PSZA 2BM5A 2IQ7A 2X85A 4YELA 3FY3A 1X0CA 1OFEA 4YEJA 3P4GA 2IOUG 3N6ZA 2J8IA 2VFNA 3NB2A 4YC5A 1EA0A 3JURA 2XT2A 1WXRA 3B4NA 3VMWA 1LM1A 4W8RA 3NAWA 4XLFA 1DABA 4URRA 1KCDA 1TYUA 5AMVA 3LMWA 2NTBA 4OM9A 4EW9A 2XTWA 1QRCA 3BH6B 1JRGA 1TSPA 2BM7A 3PSSA 3RIQA 1O8LA 3B8YA 1IB4A 2ODLA 1NHCA 3VSTA 4Z03A 1OGMX 4YZXA 4MR0A 3PETA 3LYCA 2PYHA 4YFOA 3UW0A 2VBMA 1AIRA 4YZQA 1TYVA 4Z05A 3BH7B 2UVFA 4W8QA 3DU1X 1BN8A 2Z8GA 3ZPPA 1GQ8A 2BSPA 4U4BA 4XLHA 4XM3A 3TH0A 3EQNA 4OJOA 1PXZA 4XL9A 3ML3A 3SZEA 3LJYA 4XLEA 2NSTA 2O6WA 3SUCA 1LLZA 3KRGA 5DNSA 4JRAC 4V02C 1K5CA 2XTYA 4AVZA 4KH3A 1VBLA 1XG2A 2EWEA 1O88A 2NTQA 2INUA 2XC1A 3GQ7A 1IDKA 1RU4A 4XN0A 1QA2A 1KQ5A 3SQVA 1QA3A 3EQOA 3ZSCA 1QQ1A 2F3LA 2QY1A 2VFMA 2PYGA 2VJIA 2QX3A 4W8TA 2QYUA 3VMVA 3B90A 1QJVA 2O0VA 3AK5A 2VBEA 1BHEA 5JLVC 2BX6A 1TYXA 4XMYA 2VJJA 4OZYA 2BM6A 1HF2A 4YZ0A 2V5IA 2VFQA 1DBGA 3VSUA 4XNFA 4NK8A 4XONA 2VFPA 1O8JA 4OZZA 1O8IA 4YZAA 2BM4A 2PECA 1PLUA 4XORA 4YEIA 4Z06A 3N90A 4OJLA 3H09A 1K8FA 1O8KA 1CLWA 1IDJA
chains in the Genus database with same CATH topology
4I84A 1KTWA 2X6WA 1O8MA 3GRHA 3T9GA 4W8SA 4OJ6A 5C1CA 4OJPA 1RWRA 2NT9A 1DBOA 1PE9A 4XN3A 3WWGA 4C2LA 1WMRA 5C1EA 2X6XA 2NSPA 1O8HA 4PMHA 4XQFA 2X3HA 2NTPA 1OFLA 1O8DA 2QXZA 1QCXA 1O8FA 4XKWA 4XLCA 4MXNA 4NK6A 1EE6A 2X6YA 4XKVA 4XR6A 1O8GA 4OJ5A 1JTAA 2INVA 4XOTA 2NZMA 4HWVA 4XLAA 2O04A 1OFMA 1O8EA 2VBKA 1OGOX 2UVEA 3VSVA 2NT6A 2O17A 1HG8A 3GQAA 4XOPA 3GQ8A 3GQ9A 4U49A 1CZFA 1IA5A 2O0WA 1KCCA 2O1DA 1H80A 1RMGA 1OOCA 4YELA 2IQ7A 2X85A 3FY3A 1X0CA 4YEJA 3JURA 3B4NA 3VMWA 4XLFA 4URRA 1KCDA 5AMVA 3LMWA 2NTBA 4EW9A 1JRGA 1O8LA 3B8YA 1IB4A 2ODLA 1NHCA 3VSTA 4Z03A 1OGMX 4YZXA 4MR0A 2PYHA 3UW0A 2VBMA 1AIRA 4YZQA 4Z05A 2UVFA 4W8QA 1BN8A 2Z8GA 3ZPPA 1GQ8A 2BSPA 4U4BA 4XLHA 4XM3A 3EQNA 4OJOA 1PXZA 4XL9A 4XLEA 2NSTA 3SUCA 3KRGA 1K5CA 4AVZA 1VBLA 1XG2A 2EWEA 1O88A 2NTQA 2INUA 3GQ7A 4XN0A 1IDKA 1RU4A 3EQOA 3ZSCA 2QY1A 2PYGA 2VJIA 2QX3A 4W8TA 3VMVA 3B90A 1QJVA 2O0VA 2VBEA 1BHEA 4XMYA 2VJJA 4OZYA 4YZ0A 1DBGA 3VSUA 4XNFA 4NK8A 4XONA 1O8JA 4OZZA 1O8IA 4YZAA 2PECA 4XORA 1PLUA 4Z06A 4OJLA 4W8RA 1O8KA 1IDJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4I84 A;  1KTW A;  2X6W A;  1O8M A;  3GRH A;  3T9G A;  4W8S A;  4OJ6 A;  5C1C A;  4OJP A;  1RWR A;  2NT9 A;  1DBO A;  1PE9 A;  4XN3 A;  3WWG A;  4C2L A;  1WMR A;  5C1E A;  2X6X A;  2NSP A;  1O8H A;  4PMH A;  4XQF A;  2X3H A;  2NTP A;  1OFL A;  1O8D A;  2QXZ A;  1QCX A;  1O8F A;  4XKW A;  4XLC A;  4MXN A;  4NK6 A;  1EE6 A;  2X6Y A;  4XKV A;  4XR6 A;  1O8G A;  4OJ5 A;  1JTA A;  2INV A;  4XOT A;  2NZM A;  4HWV A;  4XLA A;  2O04 A;  1OFM A;  1O8E A;  2VBK A;  1OGO X;  2UVE A;  3VSV A;  2NT6 A;  2O17 A;  1HG8 A;  3GQA A;  4XOP A;  3GQ8 A;  3GQ9 A;  4U49 A;  1CZF A;  1IA5 A;  2O0W A;  1KCC A;  2O1D A;  1H80 A;  1RMG A;  1OOC A;  4YEL A;  2IQ7 A;  2X85 A;  3FY3 A;  1X0C A;  4YEJ A;  3JUR A;  3B4N A;  3VMW A;  4XLF A;  4URR A;  1KCD A;  5AMV A;  3LMW A;  2NTB A;  4EW9 A;  1JRG A;  1O8L A;  3B8Y A;  1IB4 A;  2ODL A;  1NHC A;  3VST A;  4Z03 A;  1OGM X;  4YZX A;  4MR0 A;  2PYH A;  3UW0 A;  2VBM A;  1AIR A;  4YZQ A;  4Z05 A;  2UVF A;  4W8Q A;  1BN8 A;  2Z8G A;  3ZPP A;  1GQ8 A;  2BSP A;  4U4B A;  4XLH A;  4XM3 A;  3EQN A;  4OJO A;  1PXZ A;  4XL9 A;  4XLE A;  2NST A;  3SUC A;  3KRG A;  1K5C A;  4AVZ A;  1VBL A;  1XG2 A;  2EWE A;  1O88 A;  2NTQ A;  2INU A;  3GQ7 A;  4XN0 A;  1IDK A;  1RU4 A;  3EQO A;  3ZSC A;  2QY1 A;  2PYG A;  2VJI A;  2QX3 A;  4W8T A;  3VMV A;  3B90 A;  1QJV A;  2O0V A;  2VBE A;  1BHE A;  4XMY A;  2VJJ A;  4OZY A;  4YZ0 A;  1DBG A;  3VSU A;  4XNF A;  4NK8 A;  4XON A;  1O8J A;  4OZZ A;  1O8I A;  4YZA A;  2PEC A;  4XOR A;  1PLU A;  4Z06 A;  4OJL A;  4W8R A;  1O8K A;  1IDJ A; 
#chains in the Genus database with same CATH topology
 4I84 A;  1KTW A;  2X6W A;  1O8M A;  4OPW A;  3GRH A;  2YUH A;  3T9G A;  4YDT A;  4W8S A;  3SYJ A;  4OJ6 A;  5C1C A;  4OJP A;  1TYW A;  1RWR A;  2NT9 A;  1LLW A;  1QA1 A;  1QRB A;  1DBO A;  1PE9 A;  4XN3 A;  3WWG A;  4C2L A;  1EZG A;  1WMR A;  5C1E A;  2X6X A;  2NSP A;  1O8H A;  4PMH A;  4XQF A;  2X3H A;  2NTP A;  3JX8 A;  1OFL A;  1O8D A;  2QXZ A;  4YCQ A;  1QCX A;  1O8F A;  2VFO A;  4XKW A;  4XLC A;  2J8K A;  4MXN A;  4NK6 A;  1EE6 A;  2X6Y A;  4XKV A;  4XR6 A;  1O8G A;  4OJ5 A;  3SY2 A;  1L1I A;  1JTA A;  2INV A;  4XOT A;  2NZM A;  4HWV A;  4XLA A;  2O04 A;  2XT4 A;  1OFM A;  1O8E A;  1OFD A;  2VBK A;  1OGO X;  2UVE A;  3VSV A;  2NT6 A;  2O17 A;  1HG8 A;  3GQA A;  4XOP A;  1K4Z A;  2B0R A;  3GQ8 A;  3GQ9 A;  4U49 A;  1CZF A;  2G0Y A;  1IA5 A;  2O0W A;  5JMC B;  1KCC A;  2W7Z A;  2XTX A;  2O1D A;  2QZA A;  1H80 A;  1RMG A;  1OOC A;  3PSZ A;  2BM5 A;  2IQ7 A;  2X85 A;  4YEL A;  3FY3 A;  1X0C A;  1OFE A;  4YEJ A;  3P4G A;  2IOU G;  3N6Z A;  2J8I A;  2VFN A;  3NB2 A;  4YC5 A;  1EA0 A;  3JUR A;  2XT2 A;  1WXR A;  3B4N A;  3VMW A;  1LM1 A;  4W8R A;  3NAW A;  4XLF A;  1DAB A;  4URR A;  1KCD A;  1TYU A;  5AMV A;  3LMW A;  2NTB A;  4OM9 A;  4EW9 A;  2XTW A;  1QRC A;  3BH6 B;  1JRG A;  1TSP A;  2BM7 A;  3PSS A;  3RIQ A;  1O8L A;  3B8Y A;  1IB4 A;  2ODL A;  1NHC A;  3VST A;  4Z03 A;  1OGM X;  4YZX A;  4MR0 A;  3PET A;  3LYC A;  2PYH A;  4YFO A;  3UW0 A;  2VBM A;  1AIR A;  4YZQ A;  1TYV A;  4Z05 A;  3BH7 B;  2UVF A;  4W8Q A;  3DU1 X;  1BN8 A;  2Z8G A;  3ZPP A;  1GQ8 A;  2BSP A;  4U4B A;  4XLH A;  4XM3 A;  3TH0 A;  3EQN A;  4OJO A;  1PXZ A;  4XL9 A;  3ML3 A;  3SZE A;  3LJY A;  4XLE A;  2NST A;  2O6W A;  3SUC A;  1LLZ A;  3KRG A;  5DNS A;  4JRA C;  4V02 C;  1K5C A;  2XTY A;  4AVZ A;  4KH3 A;  1VBL A;  1XG2 A;  2EWE A;  1O88 A;  2NTQ A;  2INU A;  2XC1 A;  3GQ7 A;  1IDK A;  1RU4 A;  4XN0 A;  1QA2 A;  1KQ5 A;  3SQV A;  1QA3 A;  3EQO A;  3ZSC A;  1QQ1 A;  2F3L A;  2QY1 A;  2VFM A;  2PYG A;  2VJI A;  2QX3 A;  4W8T A;  2QYU A;  3VMV A;  3B90 A;  1QJV A;  2O0V A;  3AK5 A;  2VBE A;  1BHE A;  5JLV C;  2BX6 A;  1TYX A;  4XMY A;  2VJJ A;  4OZY A;  2BM6 A;  1HF2 A;  4YZ0 A;  2V5I A;  2VFQ A;  1DBG A;  3VSU A;  4XNF A;  4NK8 A;  4XON A;  2VFP A;  1O8J A;  4OZZ A;  1O8I A;  4YZA A;  2BM4 A;  2PEC A;  1PLU A;  4XOR A;  4YEI A;  4Z06 A;  3N90 A;  4OJL A;  3H09 A;  1K8F A;  1O8K A;  1CLW A;  1IDJ A; 
#chains in the Genus database with same CATH homology
 4I84 A;  1KTW A;  2X6W A;  1O8M A;  3GRH A;  3T9G A;  4W8S A;  4OJ6 A;  5C1C A;  4OJP A;  1RWR A;  2NT9 A;  1DBO A;  1PE9 A;  4XN3 A;  3WWG A;  4C2L A;  1WMR A;  5C1E A;  2X6X A;  2NSP A;  1O8H A;  4PMH A;  4XQF A;  2X3H A;  2NTP A;  1OFL A;  1O8D A;  2QXZ A;  1QCX A;  1O8F A;  4XKW A;  4XLC A;  4MXN A;  4NK6 A;  1EE6 A;  2X6Y A;  4XKV A;  4XR6 A;  1O8G A;  4OJ5 A;  1JTA A;  2INV A;  4XOT A;  2NZM A;  4HWV A;  4XLA A;  2O04 A;  1OFM A;  1O8E A;  2VBK A;  1OGO X;  2UVE A;  3VSV A;  2NT6 A;  2O17 A;  1HG8 A;  3GQA A;  4XOP A;  3GQ8 A;  3GQ9 A;  4U49 A;  1CZF A;  1IA5 A;  2O0W A;  1KCC A;  2O1D A;  1H80 A;  1RMG A;  1OOC A;  4YEL A;  2IQ7 A;  2X85 A;  3FY3 A;  1X0C A;  4YEJ A;  3JUR A;  3B4N A;  3VMW A;  4XLF A;  4URR A;  1KCD A;  5AMV A;  3LMW A;  2NTB A;  4EW9 A;  1JRG A;  1O8L A;  3B8Y A;  1IB4 A;  2ODL A;  1NHC A;  3VST A;  4Z03 A;  1OGM X;  4YZX A;  4MR0 A;  2PYH A;  3UW0 A;  2VBM A;  1AIR A;  4YZQ A;  4Z05 A;  2UVF A;  4W8Q A;  1BN8 A;  2Z8G A;  3ZPP A;  1GQ8 A;  2BSP A;  4U4B A;  4XLH A;  4XM3 A;  3EQN A;  4OJO A;  1PXZ A;  4XL9 A;  4XLE A;  2NST A;  3SUC A;  3KRG A;  1K5C A;  4AVZ A;  1VBL A;  1XG2 A;  2EWE A;  1O88 A;  2NTQ A;  2INU A;  3GQ7 A;  4XN0 A;  1IDK A;  1RU4 A;  3EQO A;  3ZSC A;  2QY1 A;  2PYG A;  2VJI A;  2QX3 A;  4W8T A;  3VMV A;  3B90 A;  1QJV A;  2O0V A;  2VBE A;  1BHE A;  4XMY A;  2VJJ A;  4OZY A;  4YZ0 A;  1DBG A;  3VSU A;  4XNF A;  4NK8 A;  4XON A;  1O8J A;  4OZZ A;  1O8I A;  4YZA A;  2PEC A;  4XOR A;  1PLU A;  4Z06 A;  4OJL A;  4W8R A;  1O8K A;  1IDJ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...