1OOCA

Mutations in the t1.5 loop of pectate lyase a
Total Genus 130
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
130
sequence length
361
structure length
361
Chain Sequence
AELVSDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNGSIFSDNGSVLNGSAVDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSGKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
source organism Erwinia chrysanthemi
publication title Effect of mutations in the T1.5 loop of pectate lyase A from Erwinia chrysanthemi EC16.
pubmed doi rcsb
molecule keywords Pectate lyase A
total genus 130
structure length 361
sequence length 361
chains with identical sequence B
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2003-03-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1oocA00
4OZZA 4XLHA 3SUCA 3GQ9A 4XOTA 4XN0A 1IDJA 4XNFA 1OGOX 1AIRA 2VBEA 4OJOA 4OZYA 4Z06A 2O0VA 1KCDA 2O04A 1CZFA 2INVA 1PE9A 2VJIA 4C2LA 4XLEA 3B4NA 4W8SA 1DBGA 2X6YA 1K5CA 2Z8GA 4OJPA 4Z03A 1HG8A 2PYGA 4NK8A 1RU4A 2UVFA 4XLFA 2X6XA 2VBMA 2VBKA 3UW0A 1O8HA 2EWEA 3VSTA 2UVEA 1O8DA 1IB4A 3ZSCA 4XORA 1XG2A 1EE6A 2NTBA 1QJVA 4XM3A 1KCCA 1OFMA 2NT9A 1PLUA 2NSTA 3ZPPA 4XQFA 3GQ7A 3EQNA 3JURA 2X6WA 2PYHA 1H80A 4URRA 2QXZA 3KRGA 4XKWA 5AMVA 4OJ6A 5C1CA 1JRGA 2NZMA 2QY1A 2X3HA 3LMWA 2QX3A 4XN3A 2O1DA 4XLCA 4W8TA 1IDKA 4XL9A 4MXNA 4YZ0A 3GQ8A 4OJ5A 1O8KA 2X85A 3VMWA 1VBLA 2BSPA 2PECA 2NSPA 1PXZA 1GQ8A 3EQOA 1X0CA 2VJJA 4YZQA 2NTQA 1O8MA 4HWVA 1BN8A 1JTAA 4EW9A 4XLAA 3VMVA 1WMRA 4YEJA 4YELA 4U4BA 2ODLA 1O8EA 4MR0A 4AVZA 5C1EA 1OFLA 1O8JA 1RWRA 1OOCA 1QCXA 3B8YA 1NHCA 4Z05A 2O17A 2NT6A 1BHEA 2INUA 3FY3A 1KTWA 4XR6A 1O8LA 2IQ7A 3B90A 1O8IA 3VSUA 3GRHA 3GQAA 4OJLA 4YZAA 1O8GA 4I84A 1OGMX 1IA5A 4XMYA 4XKVA 4XONA 4NK6A 4U49A 3VSVA 3WWGA 1O8FA 1DBOA 1O88A 3T9GA 1RMGA 4W8RA 2O0WA 4W8QA 2NTPA 4YZXA 4XOPA 4PMHA
chains in the Genus database with same CATH superfamily
4OZZA 1TYUA 4XLHA 3GQ9A 4XOTA 4XN0A 3SUCA 1IDJA 4XOPA 3H09A 3NAWA 1OGOX 1LM1A 1KQ5A 4XNFA 1AIRA 2VBEA 2VFOA 3TH0A 2XT2A 3BH7B 4OJOA 2F3LA 3LYCA 2BM6A 4OZYA 4Z06A 1TSPA 3PSSA 2O0VA 3NB2A 1KCDA 2O04A 3SQVA 1CZFA 2INVA 1PE9A 2VJIA 4C2LA 4XLEA 2QZAA 3B4NA 4W8SA 1DBGA 2X6YA 1K5CA 5DNSA 2YUHA 3SZEA 2Z8GA 2VFNA 4OJPA 1L1IA 3LJYA 4Z03A 1HG8A 2J8IA 2PYGA 4NK8A 1RU4A 2UVFA 4XLFA 2X6XA 2VBMA 2VBKA 3UW0A 1O8HA 2EWEA 3VSTA 2UVEA 1O8DA 2IOUG 3RIQA 1IB4A 2VFPA 2VFMA 4XORA 2QYUA 3ZSCA 3PSZA 1XG2A 1EE6A 2NTBA 1QJVA 4KH3A 1OFEA 4XM3A 1QRCA 1KCCA 1OFMA 2NT9A 1PLUA 2BM4A 2NSTA 3ZPPA 4XQFA 3GQ7A 3EQNA 3JURA 1LLWA 2B0RA 1QQ1A 2X6WA 2PYHA 1H80A 4URRA 4YDTA 2QXZA 3KRGA 4XKWA 4YC5A 5AMVA 4OJ6A 5C1CA 1QA3A 1JRGA 2NZMA 2O6WA 2QY1A 2X3HA 2V5IA 1HF2A 3LMWA 2XTYA 2QX3A 4XN3A 2O1DA 4XLCA 4W8TA 2XTWA 1IDKA 1OFDA 3ML3A 4XL9A 4MXNA 5JLVC 4YZ0A 3GQ8A 3SYJA 3P4GA 4OJ5A 1O8KA 2X85A 3VMWA 1VBLA 2BSPA 1TYWA 4YFOA 2PECA 2NSPA 1PXZA 1EZGA 1GQ8A 1K8FA 2BM7A 2J8KA 3EQOA 2VFQA 4OPWA 1X0CA 2VJJA 1K4ZA 4YZQA 1QA2A 2NTQA 1O8MA 4HWVA 1BN8A 1JTAA 4EW9A 4XLAA 3VMVA 1WMRA 4YEJA 1TYXA 4U4BA 4YELA 2ODLA 3SY2A 1O8EA 5JMCB 4MR0A 4AVZA 5C1EA 4YCQA 1OFLA 1CLWA 2G0YA 1O8JA 1RWRA 3JX8A 1OOCA 1QCXA 3B8YA 1NHCA 4Z05A 2O17A 2NT6A 1BHEA 2INUA 3FY3A 1KTWA 4XR6A 1O8LA 4JRAC 2IQ7A 4YEIA 3B90A 2XTXA 1O8IA 3VSUA 3GRHA 1EA0A 3GQAA 4OJLA 4YZAA 1O8GA 4I84A 1OGMX 3N90A 1IA5A 1TYVA 1LLZA 4XMYA 4XKVA 4XONA 2BM5A 1QA1A 4V02C 2XC1A 3DU1X 3AK5A 3BH6B 4NK6A 1WXRA 3PETA 3N6ZA 4U49A 2BX6A 3VSVA 3WWGA 1O8FA 1DBOA 1O88A 2XT4A 3T9GA 1RMGA 1QRBA 4OM9A 4W8RA 2O0WA 4W8QA 2NTPA 1DABA 4YZXA 2W7ZA 4PMHA
chains in the Genus database with same CATH topology
4OZZA 4XLHA 3SUCA 3GQ9A 4XOTA 4XN0A 1IDJA 4XNFA 1OGOX 1AIRA 2VBEA 4OJOA 4OZYA 4Z06A 2O0VA 1KCDA 2O04A 1CZFA 2INVA 1PE9A 2VJIA 4C2LA 4XLEA 3B4NA 4W8SA 1DBGA 2X6YA 1K5CA 2Z8GA 4OJPA 4Z03A 1HG8A 2PYGA 4NK8A 1RU4A 2UVFA 4XLFA 2X6XA 2VBMA 2VBKA 3UW0A 1O8HA 2EWEA 3VSTA 2UVEA 1O8DA 1IB4A 3ZSCA 4XORA 1XG2A 1EE6A 2NTBA 1QJVA 4XM3A 1KCCA 1OFMA 2NT9A 1PLUA 2NSTA 3ZPPA 4XQFA 3GQ7A 3EQNA 3JURA 2X6WA 2PYHA 1H80A 4URRA 2QXZA 3KRGA 4XKWA 5AMVA 4OJ6A 5C1CA 1JRGA 2NZMA 2QY1A 2X3HA 3LMWA 2QX3A 4XN3A 2O1DA 4XLCA 4W8TA 1IDKA 4XL9A 4MXNA 4YZ0A 3GQ8A 4OJ5A 1O8KA 2X85A 3VMWA 1VBLA 2BSPA 2PECA 2NSPA 1PXZA 1GQ8A 3EQOA 1X0CA 2VJJA 4YZQA 2NTQA 1O8MA 4HWVA 1BN8A 1JTAA 4EW9A 4XLAA 3VMVA 1WMRA 4YEJA 4YELA 4U4BA 2ODLA 1O8EA 4MR0A 4AVZA 5C1EA 1OFLA 1O8JA 1RWRA 1OOCA 1QCXA 3B8YA 1NHCA 4Z05A 2O17A 2NT6A 1BHEA 2INUA 3FY3A 1KTWA 4XR6A 1O8LA 2IQ7A 3B90A 1O8IA 3VSUA 3GRHA 3GQAA 4OJLA 4YZAA 1O8GA 4I84A 1OGMX 1IA5A 4XMYA 4XKVA 4XONA 4NK6A 4U49A 3VSVA 3WWGA 1O8FA 1DBOA 1O88A 3T9GA 1RMGA 4W8RA 2O0WA 4W8QA 2NTPA 4YZXA 4XOPA 4PMHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OZZ A;  4XLH A;  3SUC A;  3GQ9 A;  4XOT A;  4XN0 A;  1IDJ A;  4XNF A;  1OGO X;  1AIR A;  2VBE A;  4OJO A;  4OZY A;  4Z06 A;  2O0V A;  1KCD A;  2O04 A;  1CZF A;  2INV A;  1PE9 A;  2VJI A;  4C2L A;  4XLE A;  3B4N A;  4W8S A;  1DBG A;  2X6Y A;  1K5C A;  2Z8G A;  4OJP A;  4Z03 A;  1HG8 A;  2PYG A;  4NK8 A;  1RU4 A;  2UVF A;  4XLF A;  2X6X A;  2VBM A;  2VBK A;  3UW0 A;  1O8H A;  2EWE A;  3VST A;  2UVE A;  1O8D A;  1IB4 A;  3ZSC A;  4XOR A;  1XG2 A;  1EE6 A;  2NTB A;  1QJV A;  4XM3 A;  1KCC A;  1OFM A;  2NT9 A;  1PLU A;  2NST A;  3ZPP A;  4XQF A;  3GQ7 A;  3EQN A;  3JUR A;  2X6W A;  2PYH A;  1H80 A;  4URR A;  2QXZ A;  3KRG A;  4XKW A;  5AMV A;  4OJ6 A;  5C1C A;  1JRG A;  2NZM A;  2QY1 A;  2X3H A;  3LMW A;  2QX3 A;  4XN3 A;  2O1D A;  4XLC A;  4W8T A;  1IDK A;  4XL9 A;  4MXN A;  4YZ0 A;  3GQ8 A;  4OJ5 A;  1O8K A;  2X85 A;  3VMW A;  1VBL A;  2BSP A;  2PEC A;  2NSP A;  1PXZ A;  1GQ8 A;  3EQO A;  1X0C A;  2VJJ A;  4YZQ A;  2NTQ A;  1O8M A;  4HWV A;  1BN8 A;  1JTA A;  4EW9 A;  4XLA A;  3VMV A;  1WMR A;  4YEJ A;  4YEL A;  4U4B A;  2ODL A;  1O8E A;  4MR0 A;  4AVZ A;  5C1E A;  1OFL A;  1O8J A;  1RWR A;  1OOC A;  1QCX A;  3B8Y A;  1NHC A;  4Z05 A;  2O17 A;  2NT6 A;  1BHE A;  2INU A;  3FY3 A;  1KTW A;  4XR6 A;  1O8L A;  2IQ7 A;  3B90 A;  1O8I A;  3VSU A;  3GRH A;  3GQA A;  4OJL A;  4YZA A;  1O8G A;  4I84 A;  1OGM X;  1IA5 A;  4XMY A;  4XKV A;  4XON A;  4NK6 A;  4U49 A;  3VSV A;  3WWG A;  1O8F A;  1DBO A;  1O88 A;  3T9G A;  1RMG A;  4W8R A;  2O0W A;  4W8Q A;  2NTP A;  4YZX A;  4XOP A;  4PMH A; 
#chains in the Genus database with same CATH topology
 4OZZ A;  1TYU A;  4XLH A;  3GQ9 A;  4XOT A;  4XN0 A;  3SUC A;  1IDJ A;  4XOP A;  3H09 A;  3NAW A;  1OGO X;  1LM1 A;  1KQ5 A;  4XNF A;  1AIR A;  2VBE A;  2VFO A;  3TH0 A;  2XT2 A;  3BH7 B;  4OJO A;  2F3L A;  3LYC A;  2BM6 A;  4OZY A;  4Z06 A;  1TSP A;  3PSS A;  2O0V A;  3NB2 A;  1KCD A;  2O04 A;  3SQV A;  1CZF A;  2INV A;  1PE9 A;  2VJI A;  4C2L A;  4XLE A;  2QZA A;  3B4N A;  4W8S A;  1DBG A;  2X6Y A;  1K5C A;  5DNS A;  2YUH A;  3SZE A;  2Z8G A;  2VFN A;  4OJP A;  1L1I A;  3LJY A;  4Z03 A;  1HG8 A;  2J8I A;  2PYG A;  4NK8 A;  1RU4 A;  2UVF A;  4XLF A;  2X6X A;  2VBM A;  2VBK A;  3UW0 A;  1O8H A;  2EWE A;  3VST A;  2UVE A;  1O8D A;  2IOU G;  3RIQ A;  1IB4 A;  2VFP A;  2VFM A;  4XOR A;  2QYU A;  3ZSC A;  3PSZ A;  1XG2 A;  1EE6 A;  2NTB A;  1QJV A;  4KH3 A;  1OFE A;  4XM3 A;  1QRC A;  1KCC A;  1OFM A;  2NT9 A;  1PLU A;  2BM4 A;  2NST A;  3ZPP A;  4XQF A;  3GQ7 A;  3EQN A;  3JUR A;  1LLW A;  2B0R A;  1QQ1 A;  2X6W A;  2PYH A;  1H80 A;  4URR A;  4YDT A;  2QXZ A;  3KRG A;  4XKW A;  4YC5 A;  5AMV A;  4OJ6 A;  5C1C A;  1QA3 A;  1JRG A;  2NZM A;  2O6W A;  2QY1 A;  2X3H A;  2V5I A;  1HF2 A;  3LMW A;  2XTY A;  2QX3 A;  4XN3 A;  2O1D A;  4XLC A;  4W8T A;  2XTW A;  1IDK A;  1OFD A;  3ML3 A;  4XL9 A;  4MXN A;  5JLV C;  4YZ0 A;  3GQ8 A;  3SYJ A;  3P4G A;  4OJ5 A;  1O8K A;  2X85 A;  3VMW A;  1VBL A;  2BSP A;  1TYW A;  4YFO A;  2PEC A;  2NSP A;  1PXZ A;  1EZG A;  1GQ8 A;  1K8F A;  2BM7 A;  2J8K A;  3EQO A;  2VFQ A;  4OPW A;  1X0C A;  2VJJ A;  1K4Z A;  4YZQ A;  1QA2 A;  2NTQ A;  1O8M A;  4HWV A;  1BN8 A;  1JTA A;  4EW9 A;  4XLA A;  3VMV A;  1WMR A;  4YEJ A;  1TYX A;  4U4B A;  4YEL A;  2ODL A;  3SY2 A;  1O8E A;  5JMC B;  4MR0 A;  4AVZ A;  5C1E A;  4YCQ A;  1OFL A;  1CLW A;  2G0Y A;  1O8J A;  1RWR A;  3JX8 A;  1OOC A;  1QCX A;  3B8Y A;  1NHC A;  4Z05 A;  2O17 A;  2NT6 A;  1BHE A;  2INU A;  3FY3 A;  1KTW A;  4XR6 A;  1O8L A;  4JRA C;  2IQ7 A;  4YEI A;  3B90 A;  2XTX A;  1O8I A;  3VSU A;  3GRH A;  1EA0 A;  3GQA A;  4OJL A;  4YZA A;  1O8G A;  4I84 A;  1OGM X;  3N90 A;  1IA5 A;  1TYV A;  1LLZ A;  4XMY A;  4XKV A;  4XON A;  2BM5 A;  1QA1 A;  4V02 C;  2XC1 A;  3DU1 X;  3AK5 A;  3BH6 B;  4NK6 A;  1WXR A;  3PET A;  3N6Z A;  4U49 A;  2BX6 A;  3VSV A;  3WWG A;  1O8F A;  1DBO A;  1O88 A;  2XT4 A;  3T9G A;  1RMG A;  1QRB A;  4OM9 A;  4W8R A;  2O0W A;  4W8Q A;  2NTP A;  1DAB A;  4YZX A;  2W7Z A;  4PMH A; 
#chains in the Genus database with same CATH homology
 4OZZ A;  4XLH A;  3SUC A;  3GQ9 A;  4XOT A;  4XN0 A;  1IDJ A;  4XNF A;  1OGO X;  1AIR A;  2VBE A;  4OJO A;  4OZY A;  4Z06 A;  2O0V A;  1KCD A;  2O04 A;  1CZF A;  2INV A;  1PE9 A;  2VJI A;  4C2L A;  4XLE A;  3B4N A;  4W8S A;  1DBG A;  2X6Y A;  1K5C A;  2Z8G A;  4OJP A;  4Z03 A;  1HG8 A;  2PYG A;  4NK8 A;  1RU4 A;  2UVF A;  4XLF A;  2X6X A;  2VBM A;  2VBK A;  3UW0 A;  1O8H A;  2EWE A;  3VST A;  2UVE A;  1O8D A;  1IB4 A;  3ZSC A;  4XOR A;  1XG2 A;  1EE6 A;  2NTB A;  1QJV A;  4XM3 A;  1KCC A;  1OFM A;  2NT9 A;  1PLU A;  2NST A;  3ZPP A;  4XQF A;  3GQ7 A;  3EQN A;  3JUR A;  2X6W A;  2PYH A;  1H80 A;  4URR A;  2QXZ A;  3KRG A;  4XKW A;  5AMV A;  4OJ6 A;  5C1C A;  1JRG A;  2NZM A;  2QY1 A;  2X3H A;  3LMW A;  2QX3 A;  4XN3 A;  2O1D A;  4XLC A;  4W8T A;  1IDK A;  4XL9 A;  4MXN A;  4YZ0 A;  3GQ8 A;  4OJ5 A;  1O8K A;  2X85 A;  3VMW A;  1VBL A;  2BSP A;  2PEC A;  2NSP A;  1PXZ A;  1GQ8 A;  3EQO A;  1X0C A;  2VJJ A;  4YZQ A;  2NTQ A;  1O8M A;  4HWV A;  1BN8 A;  1JTA A;  4EW9 A;  4XLA A;  3VMV A;  1WMR A;  4YEJ A;  4YEL A;  4U4B A;  2ODL A;  1O8E A;  4MR0 A;  4AVZ A;  5C1E A;  1OFL A;  1O8J A;  1RWR A;  1OOC A;  1QCX A;  3B8Y A;  1NHC A;  4Z05 A;  2O17 A;  2NT6 A;  1BHE A;  2INU A;  3FY3 A;  1KTW A;  4XR6 A;  1O8L A;  2IQ7 A;  3B90 A;  1O8I A;  3VSU A;  3GRH A;  3GQA A;  4OJL A;  4YZA A;  1O8G A;  4I84 A;  1OGM X;  1IA5 A;  4XMY A;  4XKV A;  4XON A;  4NK6 A;  4U49 A;  3VSV A;  3WWG A;  1O8F A;  1DBO A;  1O88 A;  3T9G A;  1RMG A;  4W8R A;  2O0W A;  4W8Q A;  2NTP A;  4YZX A;  4XOP A;  4PMH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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