1OOCA

Mutations in the t1.5 loop of pectate lyase a
Total Genus 130
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
130
sequence length
361
structure length
361
Chain Sequence
AELVSDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNGSIFSDNGSVLNGSAVDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSGKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Effect of mutations in the T1.5 loop of pectate lyase A from Erwinia chrysanthemi EC16.
pubmed doi rcsb
source organism Erwinia chrysanthemi
molecule tags Lyase
molecule keywords Pectate lyase A
total genus 130
structure length 361
sequence length 361
chains with identical sequence B
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2003-03-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1oocA00
3VMWA 2O0WA 4XLCA 3JURA 3FY3A 4MXNA 4NK6A 2INVA 4YEJA 4XLFA 1DBOA 4OJOA 1DBGA 1VBLA 4XMYA 3GQ9A 1JRGA 3GQAA 3WWGA 4XN0A 2NTQA 1RU4A 4YZXA 1PXZA 1NHCA 2X6WA 1GQ8A 4Z03A 3VSUA 1BHEA 2QY1A 4W8SA 4XM3A 1PLUA 4W8QA 4OJLA 1O8HA 2NTPA 3EQOA 4Z05A 3T9GA 2O1DA 4YZAA 4OZYA 3B8YA 4XLHA 4W8RA 4XNFA 4EW9A 5C1EA 3ZPPA 1KTWA 1O8MA 1RWRA 2X6YA 4XN3A 2O04A 4XL9A 4Z06A 3VSTA 1XG2A 4OJ6A 4HWVA 1O8JA 2NZMA 4XQFA 1KCCA 1OGOX 4OJPA 2X3HA 2NT6A 4XONA 3SUCA 1H80A 4XOTA 1O8FA 3GQ7A 1O8DA 2QXZA 2VBKA 4XLEA 4U4BA 1X0CA 4YELA 2Z8GA 1IDJA 1AIRA 4W8TA 4U49A 2VBMA 2VBEA 2VJIA 4NK8A 2UVFA 3EQNA 4PMHA 4AVZA 1KCDA 4XKVA 1OOCA 2X6XA 1BN8A 2INUA 1WMRA 4I84A 1O8LA 3B90A 4XKWA 1OFLA 4YZ0A 1K5CA 2VJJA 2UVEA 1PE9A 2NSTA 4URRA 1IB4A 2ODLA 4XLAA 2O0VA 1CZFA 4C2LA 1O88A 1OGMX 2EWEA 2NT9A 2PYHA 1IA5A 4XOPA 2X85A 3KRGA 1JTAA 2QX3A 3LMWA 3VSVA 3GRHA 3VMVA 1O8KA 4MR0A 2IQ7A 2PECA 5AMVA 1OFMA 1IDKA 2NSPA 1HG8A 1O8IA 1O8GA 2BSPA 3B4NA 4YZQA 2O17A 1RMGA 3GQ8A 1QJVA 4OZZA 4OJ5A 4XORA 3UW0A 4XR6A 2PYGA 1QCXA 2NTBA 3ZSCA 5C1CA 1O8EA 1EE6A
chains in the Genus database with same CATH superfamily
1OFDA 3VMWA 2VFQA 2O0WA 4XLCA 3JURA 3FY3A 4MXNA 2XTWA 1DABA 4NK6A 2INVA 4YEJA 4XLFA 1DBOA 4OJOA 1LLZA 1DBGA 1VBLA 4XMYA 5JMCB 3GQ9A 1JRGA 1TYVA 3PSZA 1TSPA 3GQAA 4YCQA 3WWGA 4XN0A 2B0RA 2NTQA 1QRCA 1K8FA 1RU4A 4YZXA 1PXZA 1NHCA 2X6WA 3TH0A 1GQ8A 4Z03A 3VSUA 1BHEA 2QY1A 1CLWA 4W8SA 4XM3A 1PLUA 4W8QA 4OJLA 1O8HA 2NTPA 3EQOA 4Z05A 3T9GA 2O1DA 4YZAA 4OZYA 2O6WA 3B8YA 4KH3A 4XLHA 1K4ZA 2W7ZA 4W8RA 4XNFA 4EW9A 2BM5A 5C1EA 3ZPPA 1KTWA 1O8MA 1RWRA 2F3LA 2J8IA 2X6YA 4XN3A 2O04A 4XL9A 4Z06A 3VSTA 1XG2A 4OJ6A 4HWVA 1O8JA 1HF2A 2NZMA 4XQFA 1OGOX 4OJPA 2NT6A 2X3HA 4XONA 4YDTA 1KCCA 3SUCA 1H80A 1EA0A 4XOTA 3AK5A 1O8FA 3GQ7A 1O8DA 2QXZA 2VBKA 4XLEA 2XT2A 4OM9A 1QQ1A 4U4BA 1X0CA 4YELA 2Z8GA 1IDJA 2XTXA 5DNSA 2J8KA 1AIRA 4W8TA 3LJYA 4U49A 2VBMA 2VBEA 2VJIA 4NK8A 2VFPA 2UVFA 3EQNA 4OPWA 4PMHA 3SYJA 4AVZA 1KCDA 2XC1A 3DU1X 1OOCA 4XKVA 2X6XA 4YFOA 2VFMA 1BN8A 2INUA 1WMRA 4I84A 1TYWA 1O8LA 2G0YA 3B90A 4XKWA 3NB2A 1OFLA 4YZ0A 1K5CA 2VJJA 4YC5A 5JLVC 1L1IA 1TYXA 1OFEA 2UVEA 2YUHA 2BM7A 3BH7B 3NAWA 1PE9A 2NSTA 3H09A 4JRAC 1QA2A 4URRA 1QRBA 1IB4A 2ODLA 4XLAA 3PETA 3SZEA 2O0VA 1CZFA 2VFNA 2QYUA 4C2LA 1O88A 3JX8A 4V02C 1OGMX 2BM4A 2EWEA 2NT9A 2PYHA 3SY2A 4XOPA 1IA5A 3SQVA 1QA1A 2X85A 3KRGA 1JTAA 2XT4A 3ML3A 2QX3A 3LMWA 3VSVA 3GRHA 3BH6B 1LM1A 2XTYA 3VMVA 1O8KA 4MR0A 2IQ7A 2PECA 2V5IA 1OFMA 2NSPA 1IDKA 2VFOA 5AMVA 3RIQA 1HG8A 1O8IA 1O8GA 3PSSA 2QZAA 1TYUA 2BSPA 2BM6A 3B4NA 3N6ZA 2O17A 1EZGA 4YZQA 1RMGA 3GQ8A 3P4GA 1WXRA 2BX6A 3LYCA 1QJVA 4YEIA 1KQ5A 4OZZA 3N90A 4OJ5A 4XORA 3UW0A 1LLWA 4XR6A 2PYGA 1QCXA 1QA3A 2NTBA 3ZSCA 5C1CA 2IOUG 1O8EA 1EE6A
chains in the Genus database with same CATH topology
3VMWA 2O0WA 4XLCA 3JURA 3FY3A 4MXNA 4NK6A 2INVA 4YEJA 4XLFA 1DBOA 4OJOA 1DBGA 1VBLA 4XMYA 3GQ9A 1JRGA 3GQAA 3WWGA 4XN0A 2NTQA 1RU4A 4YZXA 1PXZA 1NHCA 2X6WA 1GQ8A 4Z03A 3VSUA 1BHEA 2QY1A 4W8SA 4XM3A 1PLUA 4W8QA 4OJLA 1O8HA 2NTPA 3EQOA 4Z05A 3T9GA 2O1DA 4YZAA 4OZYA 3B8YA 4XLHA 4W8RA 4XNFA 4EW9A 5C1EA 3ZPPA 1KTWA 1O8MA 1RWRA 2X6YA 4XN3A 2O04A 4XL9A 4Z06A 3VSTA 1XG2A 4OJ6A 4HWVA 1O8JA 2NZMA 4XQFA 1KCCA 1OGOX 4OJPA 2X3HA 2NT6A 4XONA 3SUCA 1H80A 4XOTA 1O8FA 3GQ7A 1O8DA 2QXZA 2VBKA 4XLEA 4U4BA 1X0CA 4YELA 2Z8GA 1IDJA 1AIRA 4W8TA 4U49A 2VBMA 2VBEA 2VJIA 4NK8A 2UVFA 3EQNA 4PMHA 4AVZA 1KCDA 4XKVA 1OOCA 2X6XA 1BN8A 2INUA 1WMRA 4I84A 1O8LA 3B90A 4XKWA 1OFLA 4YZ0A 1K5CA 2VJJA 2UVEA 1PE9A 2NSTA 4URRA 1IB4A 2ODLA 4XLAA 2O0VA 1CZFA 4C2LA 1O88A 1OGMX 2EWEA 2NT9A 2PYHA 1IA5A 4XOPA 2X85A 3KRGA 1JTAA 2QX3A 3LMWA 3VSVA 3GRHA 3VMVA 1O8KA 4MR0A 2IQ7A 2PECA 5AMVA 1OFMA 1IDKA 2NSPA 1HG8A 1O8IA 1O8GA 2BSPA 3B4NA 4YZQA 2O17A 1RMGA 3GQ8A 1QJVA 4OZZA 4OJ5A 4XORA 3UW0A 4XR6A 2PYGA 1QCXA 2NTBA 3ZSCA 5C1CA 1O8EA 1EE6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VMW A;  2O0W A;  4XLC A;  3JUR A;  3FY3 A;  4MXN A;  4NK6 A;  2INV A;  4YEJ A;  4XLF A;  1DBO A;  4OJO A;  1DBG A;  1VBL A;  4XMY A;  3GQ9 A;  1JRG A;  3GQA A;  3WWG A;  4XN0 A;  2NTQ A;  1RU4 A;  4YZX A;  1PXZ A;  1NHC A;  2X6W A;  1GQ8 A;  4Z03 A;  3VSU A;  1BHE A;  2QY1 A;  4W8S A;  4XM3 A;  1PLU A;  4W8Q A;  4OJL A;  1O8H A;  2NTP A;  3EQO A;  4Z05 A;  3T9G A;  2O1D A;  4YZA A;  4OZY A;  3B8Y A;  4XLH A;  4W8R A;  4XNF A;  4EW9 A;  5C1E A;  3ZPP A;  1KTW A;  1O8M A;  1RWR A;  2X6Y A;  4XN3 A;  2O04 A;  4XL9 A;  4Z06 A;  3VST A;  1XG2 A;  4OJ6 A;  4HWV A;  1O8J A;  2NZM A;  4XQF A;  1KCC A;  1OGO X;  4OJP A;  2X3H A;  2NT6 A;  4XON A;  3SUC A;  1H80 A;  4XOT A;  1O8F A;  3GQ7 A;  1O8D A;  2QXZ A;  2VBK A;  4XLE A;  4U4B A;  1X0C A;  4YEL A;  2Z8G A;  1IDJ A;  1AIR A;  4W8T A;  4U49 A;  2VBM A;  2VBE A;  2VJI A;  4NK8 A;  2UVF A;  3EQN A;  4PMH A;  4AVZ A;  1KCD A;  4XKV A;  1OOC A;  2X6X A;  1BN8 A;  2INU A;  1WMR A;  4I84 A;  1O8L A;  3B90 A;  4XKW A;  1OFL A;  4YZ0 A;  1K5C A;  2VJJ A;  2UVE A;  1PE9 A;  2NST A;  4URR A;  1IB4 A;  2ODL A;  4XLA A;  2O0V A;  1CZF A;  4C2L A;  1O88 A;  1OGM X;  2EWE A;  2NT9 A;  2PYH A;  1IA5 A;  4XOP A;  2X85 A;  3KRG A;  1JTA A;  2QX3 A;  3LMW A;  3VSV A;  3GRH A;  3VMV A;  1O8K A;  4MR0 A;  2IQ7 A;  2PEC A;  5AMV A;  1OFM A;  1IDK A;  2NSP A;  1HG8 A;  1O8I A;  1O8G A;  2BSP A;  3B4N A;  4YZQ A;  2O17 A;  1RMG A;  3GQ8 A;  1QJV A;  4OZZ A;  4OJ5 A;  4XOR A;  3UW0 A;  4XR6 A;  2PYG A;  1QCX A;  2NTB A;  3ZSC A;  5C1C A;  1O8E A;  1EE6 A; 
#chains in the Genus database with same CATH topology
 1OFD A;  3VMW A;  2VFQ A;  2O0W A;  4XLC A;  3JUR A;  3FY3 A;  4MXN A;  2XTW A;  1DAB A;  4NK6 A;  2INV A;  4YEJ A;  4XLF A;  1DBO A;  4OJO A;  1LLZ A;  1DBG A;  1VBL A;  4XMY A;  5JMC B;  3GQ9 A;  1JRG A;  1TYV A;  3PSZ A;  1TSP A;  3GQA A;  4YCQ A;  3WWG A;  4XN0 A;  2B0R A;  2NTQ A;  1QRC A;  1K8F A;  1RU4 A;  4YZX A;  1PXZ A;  1NHC A;  2X6W A;  3TH0 A;  1GQ8 A;  4Z03 A;  3VSU A;  1BHE A;  2QY1 A;  1CLW A;  4W8S A;  4XM3 A;  1PLU A;  4W8Q A;  4OJL A;  1O8H A;  2NTP A;  3EQO A;  4Z05 A;  3T9G A;  2O1D A;  4YZA A;  4OZY A;  2O6W A;  3B8Y A;  4KH3 A;  4XLH A;  1K4Z A;  2W7Z A;  4W8R A;  4XNF A;  4EW9 A;  2BM5 A;  5C1E A;  3ZPP A;  1KTW A;  1O8M A;  1RWR A;  2F3L A;  2J8I A;  2X6Y A;  4XN3 A;  2O04 A;  4XL9 A;  4Z06 A;  3VST A;  1XG2 A;  4OJ6 A;  4HWV A;  1O8J A;  1HF2 A;  2NZM A;  4XQF A;  1OGO X;  4OJP A;  2NT6 A;  2X3H A;  4XON A;  4YDT A;  1KCC A;  3SUC A;  1H80 A;  1EA0 A;  4XOT A;  3AK5 A;  1O8F A;  3GQ7 A;  1O8D A;  2QXZ A;  2VBK A;  4XLE A;  2XT2 A;  4OM9 A;  1QQ1 A;  4U4B A;  1X0C A;  4YEL A;  2Z8G A;  1IDJ A;  2XTX A;  5DNS A;  2J8K A;  1AIR A;  4W8T A;  3LJY A;  4U49 A;  2VBM A;  2VBE A;  2VJI A;  4NK8 A;  2VFP A;  2UVF A;  3EQN A;  4OPW A;  4PMH A;  3SYJ A;  4AVZ A;  1KCD A;  2XC1 A;  3DU1 X;  1OOC A;  4XKV A;  2X6X A;  4YFO A;  2VFM A;  1BN8 A;  2INU A;  1WMR A;  4I84 A;  1TYW A;  1O8L A;  2G0Y A;  3B90 A;  4XKW A;  3NB2 A;  1OFL A;  4YZ0 A;  1K5C A;  2VJJ A;  4YC5 A;  5JLV C;  1L1I A;  1TYX A;  1OFE A;  2UVE A;  2YUH A;  2BM7 A;  3BH7 B;  3NAW A;  1PE9 A;  2NST A;  3H09 A;  4JRA C;  1QA2 A;  4URR A;  1QRB A;  1IB4 A;  2ODL A;  4XLA A;  3PET A;  3SZE A;  2O0V A;  1CZF A;  2VFN A;  2QYU A;  4C2L A;  1O88 A;  3JX8 A;  4V02 C;  1OGM X;  2BM4 A;  2EWE A;  2NT9 A;  2PYH A;  3SY2 A;  4XOP A;  1IA5 A;  3SQV A;  1QA1 A;  2X85 A;  3KRG A;  1JTA A;  2XT4 A;  3ML3 A;  2QX3 A;  3LMW A;  3VSV A;  3GRH A;  3BH6 B;  1LM1 A;  2XTY A;  3VMV A;  1O8K A;  4MR0 A;  2IQ7 A;  2PEC A;  2V5I A;  1OFM A;  2NSP A;  1IDK A;  2VFO A;  5AMV A;  3RIQ A;  1HG8 A;  1O8I A;  1O8G A;  3PSS A;  2QZA A;  1TYU A;  2BSP A;  2BM6 A;  3B4N A;  3N6Z A;  2O17 A;  1EZG A;  4YZQ A;  1RMG A;  3GQ8 A;  3P4G A;  1WXR A;  2BX6 A;  3LYC A;  1QJV A;  4YEI A;  1KQ5 A;  4OZZ A;  3N90 A;  4OJ5 A;  4XOR A;  3UW0 A;  1LLW A;  4XR6 A;  2PYG A;  1QCX A;  1QA3 A;  2NTB A;  3ZSC A;  5C1C A;  2IOU G;  1O8E A;  1EE6 A; 
#chains in the Genus database with same CATH homology
 3VMW A;  2O0W A;  4XLC A;  3JUR A;  3FY3 A;  4MXN A;  4NK6 A;  2INV A;  4YEJ A;  4XLF A;  1DBO A;  4OJO A;  1DBG A;  1VBL A;  4XMY A;  3GQ9 A;  1JRG A;  3GQA A;  3WWG A;  4XN0 A;  2NTQ A;  1RU4 A;  4YZX A;  1PXZ A;  1NHC A;  2X6W A;  1GQ8 A;  4Z03 A;  3VSU A;  1BHE A;  2QY1 A;  4W8S A;  4XM3 A;  1PLU A;  4W8Q A;  4OJL A;  1O8H A;  2NTP A;  3EQO A;  4Z05 A;  3T9G A;  2O1D A;  4YZA A;  4OZY A;  3B8Y A;  4XLH A;  4W8R A;  4XNF A;  4EW9 A;  5C1E A;  3ZPP A;  1KTW A;  1O8M A;  1RWR A;  2X6Y A;  4XN3 A;  2O04 A;  4XL9 A;  4Z06 A;  3VST A;  1XG2 A;  4OJ6 A;  4HWV A;  1O8J A;  2NZM A;  4XQF A;  1KCC A;  1OGO X;  4OJP A;  2X3H A;  2NT6 A;  4XON A;  3SUC A;  1H80 A;  4XOT A;  1O8F A;  3GQ7 A;  1O8D A;  2QXZ A;  2VBK A;  4XLE A;  4U4B A;  1X0C A;  4YEL A;  2Z8G A;  1IDJ A;  1AIR A;  4W8T A;  4U49 A;  2VBM A;  2VBE A;  2VJI A;  4NK8 A;  2UVF A;  3EQN A;  4PMH A;  4AVZ A;  1KCD A;  4XKV A;  1OOC A;  2X6X A;  1BN8 A;  2INU A;  1WMR A;  4I84 A;  1O8L A;  3B90 A;  4XKW A;  1OFL A;  4YZ0 A;  1K5C A;  2VJJ A;  2UVE A;  1PE9 A;  2NST A;  4URR A;  1IB4 A;  2ODL A;  4XLA A;  2O0V A;  1CZF A;  4C2L A;  1O88 A;  1OGM X;  2EWE A;  2NT9 A;  2PYH A;  1IA5 A;  4XOP A;  2X85 A;  3KRG A;  1JTA A;  2QX3 A;  3LMW A;  3VSV A;  3GRH A;  3VMV A;  1O8K A;  4MR0 A;  2IQ7 A;  2PEC A;  5AMV A;  1OFM A;  1IDK A;  2NSP A;  1HG8 A;  1O8I A;  1O8G A;  2BSP A;  3B4N A;  4YZQ A;  2O17 A;  1RMG A;  3GQ8 A;  1QJV A;  4OZZ A;  4OJ5 A;  4XOR A;  3UW0 A;  4XR6 A;  2PYG A;  1QCX A;  2NTB A;  3ZSC A;  5C1C A;  1O8E A;  1EE6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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