1JTAA

Crystal structure of pectate lyase a (c2 form)
Total Genus 128
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
sequence length
361
structure length
361
Chain Sequence
b'AELVSDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHNDTNSAQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNGSIFSDNGSVLNGSAVDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSGKL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords pectate lyase A
publication title Structure of pectate lyase A: comparison to other isoforms.
pubmed doi rcsb
source organism Erwinia chrysanthemi
molecule tags Lyase
total genus 128
structure length 361
sequence length 361
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2001-08-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1jtaA00
2UVFA 3ZSCA 4XNFA 2X6XA 4URRA 4YZQA 4XLAA 3T9GA 2X6YA 1IDJA 1O8FA 1RWRA 4XLCA 1O8LA 2VBEA 3B8YA 1RMGA 4XLHA 5AMVA 3VMVA 2EWEA 2O17A 2X6WA 4YZAA 3GQ8A 2QXZA 1O8GA 1X0CA 4HWVA 1VBLA 4XMYA 4XOPA 4AVZA 4MR0A 2BSPA 4W8TA 4XORA 1O88A 2NSPA 4OZYA 4XN0A 4XQFA 1QJVA 1AIRA 3B4NA 4OJPA 4C2LA 4XKWA 1DBOA 4Z03A 2PYGA 2QX3A 4OJ5A 1JRGA 4PMHA 1K5CA 2O0WA 1DBGA 3SUCA 1IB4A 4Z06A 4NK8A 4XKVA 3UW0A 4XOTA 2INUA 4YEJA 1OFMA 1O8EA 2VJJA 1O8JA 3WWGA 1WMRA 2NZMA 4XLEA 3GQ7A 3LMWA 2X85A 4XR6A 3VSTA 2NTBA 4W8RA 1EE6A 1O8HA 4YZXA 1OFLA 4YZ0A 4XL9A 4XM3A 1HG8A 2NSTA 2VJIA 5C1EA 1OOCA 2NTQA 2QY1A 3FY3A 4OJ6A 1O8IA 4W8SA 3ZPPA 2O0VA 5C1CA 2UVEA 4U4BA 1XG2A 2O04A 2VBKA 3EQNA 1NHCA 1O8DA 1IDKA 2NT6A 4I84A 3GQ9A 1PE9A 3EQOA 3GRHA 4YELA 2NT9A 2O1DA 2PYHA 1H80A 3JURA 1RU4A 3KRGA 1KCCA 2IQ7A 1O8MA 1GQ8A 4OJOA 1KTWA 3VSUA 1IA5A 1OGMX 1OGOX 3GQAA 2ODLA 2PECA 2X3HA 1CZFA 1PLUA 3VSVA 4Z05A 3VMWA 4XLFA 4W8QA 1JTAA 4XN3A 1QCXA 4EW9A 1KCDA 2VBMA 4OJLA 1BN8A 4MXNA 2Z8GA 4U49A 4XONA 1O8KA 1BHEA 1PXZA 2NTPA 2INVA 4NK6A 3B90A 4OZZA
chains in the Genus database with same CATH superfamily
2UVFA 3ZSCA 4XNFA 2X6XA 4URRA 4YZQA 3SY2A 4KH3A 4XLAA 3T9GA 2X6YA 2IOUG 1IDJA 1O8FA 1RWRA 4XLCA 1O8LA 2VBEA 3SYJA 3B8YA 1QA3A 1L1IA 1RMGA 4XLHA 1LLWA 5AMVA 3VMVA 2EWEA 2F3LA 2O17A 2X6WA 4YZAA 3GQ8A 2QXZA 1O8GA 1X0CA 4HWVA 1VBLA 2J8IA 2XT2A 4XMYA 2QZAA 4XOPA 4AVZA 4MR0A 5DNSA 2BSPA 4W8TA 4XORA 1O88A 2NSPA 4OPWA 4OZYA 4XN0A 4YCQA 4XQFA 1OFEA 1QJVA 1AIRA 3B4NA 4OJPA 4C2LA 1DABA 2VFQA 4XKWA 1LM1A 1DBOA 4Z03A 1QA1A 2PYGA 2QX3A 4OJ5A 1LLZA 1QQ1A 1JRGA 1EA0A 4YFOA 2VFPA 1WXRA 4PMHA 1TSPA 1K5CA 3N90A 2O0WA 1DBGA 1TYWA 3SUCA 1QRBA 2VFMA 1IB4A 3LJYA 4Z06A 4NK8A 2BM6A 4XKVA 4XOTA 2INUA 4YEJA 1OFMA 3UW0A 5JLVC 1O8EA 2VJJA 3DU1X 1O8JA 3WWGA 1WMRA 2NZMA 4XLEA 2XC1A 3GQ7A 1TYXA 2X85A 2W7ZA 3LMWA 2BM5A 3N6ZA 4XR6A 2NTBA 3VSTA 1KCDA 4W8RA 3JX8A 1EE6A 1O8HA 3P4GA 4YZXA 1OFLA 4YZ0A 4XL9A 3H09A 1CLWA 4XM3A 1HG8A 4JRAC 2NSTA 2VJIA 1OFDA 5C1EA 1OOCA 2NTQA 2QY1A 3FY3A 4OJ6A 1O8IA 4V02C 4YC5A 4W8SA 3ZPPA 1QA2A 2O0VA 5C1CA 3BH6B 1K8FA 2UVEA 1HF2A 4U4BA 2BM7A 1EZGA 3NB2A 1XG2A 2G0YA 2O04A 2VBKA 2V5IA 3EQNA 2VFOA 1NHCA 1O8DA 1IDKA 2NT6A 4I84A 3GQ9A 1PE9A 3EQOA 2YUHA 3GRHA 4YELA 2NT9A 2O1DA 2PYHA 1H80A 3JURA 2J8KA 4YEIA 1RU4A 4EW9A 2XTXA 3KRGA 1KCCA 2IQ7A 1O8MA 1GQ8A 4OZZA 4OJOA 3AK5A 2BX6A 1KTWA 3VSUA 1IA5A 1OGMX 1OGOX 3GQAA 2ODLA 2PECA 2VFNA 2X3HA 3PSZA 2O6WA 3LYCA 2B0RA 5JMCB 1CZFA 1TYUA 2QYUA 4OM9A 3BH7B 1PLUA 1TYVA 2XTWA 4XN3A 3VSVA 1K4ZA 1KQ5A 4Z05A 3VMWA 3TH0A 4XLFA 2BM4A 1JTAA 3NAWA 1QCXA 3PSSA 4W8QA 2VBMA 4OJLA 1BN8A 4MXNA 2Z8GA 3ML3A 4U49A 4YDTA 1QRCA 3SQVA 3SZEA 4XONA 1O8KA 1BHEA 1PXZA 3PETA 2NTPA 3RIQA 2INVA 2XTYA 4NK6A 3B90A 2XT4A
chains in the Genus database with same CATH topology
2UVFA 3ZSCA 4XNFA 2X6XA 4URRA 4YZQA 4XLAA 3T9GA 2X6YA 1IDJA 1O8FA 1RWRA 4XLCA 1O8LA 2VBEA 3B8YA 1RMGA 4XLHA 5AMVA 3VMVA 2EWEA 2O17A 2X6WA 4YZAA 3GQ8A 2QXZA 1O8GA 1X0CA 4HWVA 1VBLA 4XMYA 4XOPA 4AVZA 4MR0A 2BSPA 4W8TA 4XORA 1O88A 2NSPA 4OZYA 4XN0A 4XQFA 1QJVA 1AIRA 3B4NA 4OJPA 4C2LA 4XKWA 1DBOA 4Z03A 2PYGA 2QX3A 4OJ5A 1JRGA 4PMHA 1K5CA 2O0WA 1DBGA 3SUCA 1IB4A 4Z06A 4NK8A 4XKVA 3UW0A 4XOTA 2INUA 4YEJA 1OFMA 1O8EA 2VJJA 1O8JA 3WWGA 1WMRA 2NZMA 4XLEA 3GQ7A 3LMWA 2X85A 4XR6A 3VSTA 2NTBA 4W8RA 1EE6A 1O8HA 4YZXA 1OFLA 4YZ0A 4XL9A 4XM3A 1HG8A 2NSTA 2VJIA 5C1EA 1OOCA 2NTQA 2QY1A 3FY3A 4OJ6A 1O8IA 4W8SA 3ZPPA 2O0VA 5C1CA 2UVEA 4U4BA 1XG2A 2O04A 2VBKA 3EQNA 1NHCA 1O8DA 1IDKA 2NT6A 4I84A 3GQ9A 1PE9A 3EQOA 3GRHA 4YELA 2NT9A 2O1DA 2PYHA 1H80A 3JURA 1RU4A 3KRGA 1KCCA 2IQ7A 1O8MA 1GQ8A 4OJOA 1KTWA 3VSUA 1IA5A 1OGMX 1OGOX 3GQAA 2ODLA 2PECA 2X3HA 1CZFA 1PLUA 3VSVA 4Z05A 3VMWA 4XLFA 4W8QA 1JTAA 4XN3A 1QCXA 4EW9A 1KCDA 2VBMA 4OJLA 1BN8A 4MXNA 2Z8GA 4U49A 4XONA 1O8KA 1BHEA 1PXZA 2NTPA 2INVA 4NK6A 3B90A 4OZZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2UVF A;  3ZSC A;  4XNF A;  2X6X A;  4URR A;  4YZQ A;  4XLA A;  3T9G A;  2X6Y A;  1IDJ A;  1O8F A;  1RWR A;  4XLC A;  1O8L A;  2VBE A;  3B8Y A;  1RMG A;  4XLH A;  5AMV A;  3VMV A;  2EWE A;  2O17 A;  2X6W A;  4YZA A;  3GQ8 A;  2QXZ A;  1O8G A;  1X0C A;  4HWV A;  1VBL A;  4XMY A;  4XOP A;  4AVZ A;  4MR0 A;  2BSP A;  4W8T A;  4XOR A;  1O88 A;  2NSP A;  4OZY A;  4XN0 A;  4XQF A;  1QJV A;  1AIR A;  3B4N A;  4OJP A;  4C2L A;  4XKW A;  1DBO A;  4Z03 A;  2PYG A;  2QX3 A;  4OJ5 A;  1JRG A;  4PMH A;  1K5C A;  2O0W A;  1DBG A;  3SUC A;  1IB4 A;  4Z06 A;  4NK8 A;  4XKV A;  3UW0 A;  4XOT A;  2INU A;  4YEJ A;  1OFM A;  1O8E A;  2VJJ A;  1O8J A;  3WWG A;  1WMR A;  2NZM A;  4XLE A;  3GQ7 A;  3LMW A;  2X85 A;  4XR6 A;  3VST A;  2NTB A;  4W8R A;  1EE6 A;  1O8H A;  4YZX A;  1OFL A;  4YZ0 A;  4XL9 A;  4XM3 A;  1HG8 A;  2NST A;  2VJI A;  5C1E A;  1OOC A;  2NTQ A;  2QY1 A;  3FY3 A;  4OJ6 A;  1O8I A;  4W8S A;  3ZPP A;  2O0V A;  5C1C A;  2UVE A;  4U4B A;  1XG2 A;  2O04 A;  2VBK A;  3EQN A;  1NHC A;  1O8D A;  1IDK A;  2NT6 A;  4I84 A;  3GQ9 A;  1PE9 A;  3EQO A;  3GRH A;  4YEL A;  2NT9 A;  2O1D A;  2PYH A;  1H80 A;  3JUR A;  1RU4 A;  3KRG A;  1KCC A;  2IQ7 A;  1O8M A;  1GQ8 A;  4OJO A;  1KTW A;  3VSU A;  1IA5 A;  1OGM X;  1OGO X;  3GQA A;  2ODL A;  2PEC A;  2X3H A;  1CZF A;  1PLU A;  3VSV A;  4Z05 A;  3VMW A;  4XLF A;  4W8Q A;  1JTA A;  4XN3 A;  1QCX A;  4EW9 A;  1KCD A;  2VBM A;  4OJL A;  1BN8 A;  4MXN A;  2Z8G A;  4U49 A;  4XON A;  1O8K A;  1BHE A;  1PXZ A;  2NTP A;  2INV A;  4NK6 A;  3B90 A;  4OZZ A; 
#chains in the Genus database with same CATH topology
 2UVF A;  3ZSC A;  4XNF A;  2X6X A;  4URR A;  4YZQ A;  3SY2 A;  4KH3 A;  4XLA A;  3T9G A;  2X6Y A;  2IOU G;  1IDJ A;  1O8F A;  1RWR A;  4XLC A;  1O8L A;  2VBE A;  3SYJ A;  3B8Y A;  1QA3 A;  1L1I A;  1RMG A;  4XLH A;  1LLW A;  5AMV A;  3VMV A;  2EWE A;  2F3L A;  2O17 A;  2X6W A;  4YZA A;  3GQ8 A;  2QXZ A;  1O8G A;  1X0C A;  4HWV A;  1VBL A;  2J8I A;  2XT2 A;  4XMY A;  2QZA A;  4XOP A;  4AVZ A;  4MR0 A;  5DNS A;  2BSP A;  4W8T A;  4XOR A;  1O88 A;  2NSP A;  4OPW A;  4OZY A;  4XN0 A;  4YCQ A;  4XQF A;  1OFE A;  1QJV A;  1AIR A;  3B4N A;  4OJP A;  4C2L A;  1DAB A;  2VFQ A;  4XKW A;  1LM1 A;  1DBO A;  4Z03 A;  1QA1 A;  2PYG A;  2QX3 A;  4OJ5 A;  1LLZ A;  1QQ1 A;  1JRG A;  1EA0 A;  4YFO A;  2VFP A;  1WXR A;  4PMH A;  1TSP A;  1K5C A;  3N90 A;  2O0W A;  1DBG A;  1TYW A;  3SUC A;  1QRB A;  2VFM A;  1IB4 A;  3LJY A;  4Z06 A;  4NK8 A;  2BM6 A;  4XKV A;  4XOT A;  2INU A;  4YEJ A;  1OFM A;  3UW0 A;  5JLV C;  1O8E A;  2VJJ A;  3DU1 X;  1O8J A;  3WWG A;  1WMR A;  2NZM A;  4XLE A;  2XC1 A;  3GQ7 A;  1TYX A;  2X85 A;  2W7Z A;  3LMW A;  2BM5 A;  3N6Z A;  4XR6 A;  2NTB A;  3VST A;  1KCD A;  4W8R A;  3JX8 A;  1EE6 A;  1O8H A;  3P4G A;  4YZX A;  1OFL A;  4YZ0 A;  4XL9 A;  3H09 A;  1CLW A;  4XM3 A;  1HG8 A;  4JRA C;  2NST A;  2VJI A;  1OFD A;  5C1E A;  1OOC A;  2NTQ A;  2QY1 A;  3FY3 A;  4OJ6 A;  1O8I A;  4V02 C;  4YC5 A;  4W8S A;  3ZPP A;  1QA2 A;  2O0V A;  5C1C A;  3BH6 B;  1K8F A;  2UVE A;  1HF2 A;  4U4B A;  2BM7 A;  1EZG A;  3NB2 A;  1XG2 A;  2G0Y A;  2O04 A;  2VBK A;  2V5I A;  3EQN A;  2VFO A;  1NHC A;  1O8D A;  1IDK A;  2NT6 A;  4I84 A;  3GQ9 A;  1PE9 A;  3EQO A;  2YUH A;  3GRH A;  4YEL A;  2NT9 A;  2O1D A;  2PYH A;  1H80 A;  3JUR A;  2J8K A;  4YEI A;  1RU4 A;  4EW9 A;  2XTX A;  3KRG A;  1KCC A;  2IQ7 A;  1O8M A;  1GQ8 A;  4OZZ A;  4OJO A;  3AK5 A;  2BX6 A;  1KTW A;  3VSU A;  1IA5 A;  1OGM X;  1OGO X;  3GQA A;  2ODL A;  2PEC A;  2VFN A;  2X3H A;  3PSZ A;  2O6W A;  3LYC A;  2B0R A;  5JMC B;  1CZF A;  1TYU A;  2QYU A;  4OM9 A;  3BH7 B;  1PLU A;  1TYV A;  2XTW A;  4XN3 A;  3VSV A;  1K4Z A;  1KQ5 A;  4Z05 A;  3VMW A;  3TH0 A;  4XLF A;  2BM4 A;  1JTA A;  3NAW A;  1QCX A;  3PSS A;  4W8Q A;  2VBM A;  4OJL A;  1BN8 A;  4MXN A;  2Z8G A;  3ML3 A;  4U49 A;  4YDT A;  1QRC A;  3SQV A;  3SZE A;  4XON A;  1O8K A;  1BHE A;  1PXZ A;  3PET A;  2NTP A;  3RIQ A;  2INV A;  2XTY A;  4NK6 A;  3B90 A;  2XT4 A; 
#chains in the Genus database with same CATH homology
 2UVF A;  3ZSC A;  4XNF A;  2X6X A;  4URR A;  4YZQ A;  4XLA A;  3T9G A;  2X6Y A;  1IDJ A;  1O8F A;  1RWR A;  4XLC A;  1O8L A;  2VBE A;  3B8Y A;  1RMG A;  4XLH A;  5AMV A;  3VMV A;  2EWE A;  2O17 A;  2X6W A;  4YZA A;  3GQ8 A;  2QXZ A;  1O8G A;  1X0C A;  4HWV A;  1VBL A;  4XMY A;  4XOP A;  4AVZ A;  4MR0 A;  2BSP A;  4W8T A;  4XOR A;  1O88 A;  2NSP A;  4OZY A;  4XN0 A;  4XQF A;  1QJV A;  1AIR A;  3B4N A;  4OJP A;  4C2L A;  4XKW A;  1DBO A;  4Z03 A;  2PYG A;  2QX3 A;  4OJ5 A;  1JRG A;  4PMH A;  1K5C A;  2O0W A;  1DBG A;  3SUC A;  1IB4 A;  4Z06 A;  4NK8 A;  4XKV A;  3UW0 A;  4XOT A;  2INU A;  4YEJ A;  1OFM A;  1O8E A;  2VJJ A;  1O8J A;  3WWG A;  1WMR A;  2NZM A;  4XLE A;  3GQ7 A;  3LMW A;  2X85 A;  4XR6 A;  3VST A;  2NTB A;  4W8R A;  1EE6 A;  1O8H A;  4YZX A;  1OFL A;  4YZ0 A;  4XL9 A;  4XM3 A;  1HG8 A;  2NST A;  2VJI A;  5C1E A;  1OOC A;  2NTQ A;  2QY1 A;  3FY3 A;  4OJ6 A;  1O8I A;  4W8S A;  3ZPP A;  2O0V A;  5C1C A;  2UVE A;  4U4B A;  1XG2 A;  2O04 A;  2VBK A;  3EQN A;  1NHC A;  1O8D A;  1IDK A;  2NT6 A;  4I84 A;  3GQ9 A;  1PE9 A;  3EQO A;  3GRH A;  4YEL A;  2NT9 A;  2O1D A;  2PYH A;  1H80 A;  3JUR A;  1RU4 A;  3KRG A;  1KCC A;  2IQ7 A;  1O8M A;  1GQ8 A;  4OJO A;  1KTW A;  3VSU A;  1IA5 A;  1OGM X;  1OGO X;  3GQA A;  2ODL A;  2PEC A;  2X3H A;  1CZF A;  1PLU A;  3VSV A;  4Z05 A;  3VMW A;  4XLF A;  4W8Q A;  1JTA A;  4XN3 A;  1QCX A;  4EW9 A;  1KCD A;  2VBM A;  4OJL A;  1BN8 A;  4MXN A;  2Z8G A;  4U49 A;  4XON A;  1O8K A;  1BHE A;  1PXZ A;  2NTP A;  2INV A;  4NK6 A;  3B90 A;  4OZZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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