1JTAA

Crystal structure of pectate lyase a (c2 form)
Total Genus 128
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
sequence length
361
structure length
361
Chain Sequence
AELVSDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHNDTNSAQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNGSIFSDNGSVLNGSAVDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSGKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords pectate lyase A
publication title Structure of pectate lyase A: comparison to other isoforms.
pubmed doi rcsb
source organism Erwinia chrysanthemi
molecule tags Lyase
total genus 128
structure length 361
sequence length 361
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2001-08-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1jtaA00
1IB4A 2QXZA 3GQAA 4W8RA 2PYHA 4URRA 4W8SA 1IA5A 4U4BA 2QX3A 1HG8A 2UVEA 4XLEA 2VBMA 1OGMX 4EW9A 2VJJA 4YZQA 3VMVA 1IDJA 1IDKA 4XLFA 2X6YA 3VMWA 1NHCA 1K5CA 3ZPPA 2X6WA 1RWRA 5AMVA 1VBLA 4XN3A 2NTBA 4MR0A 1PLUA 2O04A 4YEJA 4C2LA 2O0VA 4YELA 1PE9A 4OJLA 1KCCA 2BSPA 4YZXA 1PXZA 1EE6A 1BN8A 1KTWA 4AVZA 4OJ5A 1QJVA 2INVA 4XNFA 2NTQA 3EQNA 2ODLA 2EWEA 3GQ8A 3KRGA 2IQ7A 5C1EA 2UVFA 4XLCA 4U49A 4XORA 1OFLA 3T9GA 4XL9A 4PMHA 1O8HA 1O8KA 1WMRA 3SUCA 1AIRA 4YZAA 1X0CA 1OFMA 4W8QA 1GQ8A 3GQ9A 4XONA 2NT6A 4HWVA 2O17A 1RU4A 2PYGA 4I84A 4XKWA 4XLHA 3B8YA 2X3HA 3FY3A 1OGOX 1QCXA 4XOTA 2O1DA 4XMYA 1BHEA 1O8IA 4Z03A 2PECA 1O8LA 4NK8A 1DBOA 4XLAA 2VBEA 4Z06A 2O0WA 3VSVA 1O8EA 4Z05A 3VSTA 4MXNA 5C1CA 2X85A 1O8GA 3B90A 1O8MA 2NZMA 4W8TA 2NT9A 2QY1A 2Z8GA 2NSPA 1OOCA 3VSUA 4XQFA 2INUA 2X6XA 2NTPA 4NK6A 1JTAA 4OJ6A 4XKVA 1O88A 1KCDA 3LMWA 4YZ0A 4OZYA 4OJOA 4XN0A 3WWGA 3B4NA 1CZFA 2VBKA 4XOPA 3UW0A 3GQ7A 3JURA 1DBGA 2VJIA 1XG2A 4XM3A 3ZSCA 1JRGA 4OZZA 4XR6A 1H80A 1O8DA 4OJPA 3EQOA 1O8JA 1RMGA 2NSTA 3GRHA 1O8FA
chains in the Genus database with same CATH superfamily
1IB4A 2QXZA 3GQAA 4W8RA 2PYHA 4URRA 2VFQA 4W8SA 1IA5A 4U4BA 1QRCA 1K4ZA 1HG8A 2QX3A 2UVEA 2VBMA 1OGMX 4XLEA 3AK5A 4EW9A 2VJJA 4YZQA 3VMVA 1HF2A 1IDJA 3RIQA 1IDKA 4XLFA 2BX6A 1LLWA 2X6YA 3VMWA 4OPWA 1EA0A 1NHCA 1K5CA 3ZPPA 2X6WA 1RWRA 5AMVA 1VBLA 4XN3A 2NTBA 4MR0A 5JMCB 1PLUA 2O04A 4YEJA 4C2LA 1TYUA 2O0VA 4YELA 1PE9A 4OJLA 1KCCA 2BSPA 4YFOA 4YZXA 3TH0A 1CLWA 1PXZA 1EE6A 1QA3A 1BN8A 2XTYA 1KTWA 3BH7B 4AVZA 2W7ZA 4OJ5A 1QJVA 2INVA 1K8FA 3LYCA 2XT2A 2NTQA 3EQNA 4XNFA 1QRBA 2EWEA 2ODLA 3H09A 5DNSA 3SQVA 2YUHA 3GQ8A 3KRGA 2IQ7A 5C1EA 1DABA 2UVFA 2F3LA 4XLCA 4U49A 4XORA 1OFLA 3T9GA 4XL9A 4PMHA 1O8HA 1O8KA 1WMRA 2QZAA 2V5IA 3SUCA 4YEIA 1AIRA 4YZAA 1X0CA 1OFMA 1TYXA 2XC1A 4W8QA 3SY2A 2XTWA 2BM4A 2XT4A 1GQ8A 3GQ9A 4XONA 2NT6A 2XTXA 3NAWA 4HWVA 1L1IA 2J8KA 1KQ5A 2VFNA 2O17A 1RU4A 2PYGA 3DU1X 4I84A 4XKWA 4XLHA 3B8YA 2X3HA 3FY3A 1OGOX 1QCXA 3NB2A 2O1DA 4XOTA 4KH3A 3N90A 2G0YA 3SZEA 4XMYA 1BHEA 3BH6B 1O8IA 1TYWA 4Z03A 2PECA 1O8LA 2VFMA 4NK8A 3PETA 1DBOA 4XLAA 2VBEA 4Z06A 3ML3A 2O0WA 5JLVC 3VSVA 1O8EA 4Z05A 3VSTA 4MXNA 5C1CA 2X85A 2VFPA 1O8GA 1LM1A 3B90A 3PSSA 3JX8A 1QA1A 1O8MA 2IOUG 2BM6A 2NZMA 4JRAC 3PSZA 2NT9A 4OM9A 2QY1A 2Z8GA 4W8TA 2NSPA 2J8IA 3N6ZA 1OOCA 3VSUA 4XQFA 3SYJA 2QYUA 2INUA 4YCQA 2X6XA 2NTPA 4NK6A 1JTAA 4OJ6A 4XKVA 1O88A 1KCDA 2BM7A 1TYVA 3LMWA 4YZ0A 4OZYA 2VFOA 4OJOA 3P4GA 1QA2A 1TSPA 2B0RA 2BM5A 1QQ1A 4XN0A 2O6WA 1OFDA 3WWGA 3B4NA 1CZFA 2VBKA 4XOPA 3UW0A 3GQ7A 3JURA 4YDTA 3LJYA 1DBGA 2VJIA 1XG2A 4XM3A 3ZSCA 1JRGA 4OZZA 4XR6A 1H80A 1O8DA 4OJPA 3EQOA 4YC5A 1O8JA 1RMGA 1OFEA 2NSTA 3GRHA 4V02C 1EZGA 1WXRA 1O8FA 1LLZA
chains in the Genus database with same CATH topology
1IB4A 2QXZA 3GQAA 4W8RA 2PYHA 4URRA 4W8SA 1IA5A 4U4BA 2QX3A 1HG8A 2UVEA 4XLEA 2VBMA 1OGMX 4EW9A 2VJJA 4YZQA 3VMVA 1IDJA 1IDKA 4XLFA 2X6YA 3VMWA 1NHCA 1K5CA 3ZPPA 2X6WA 1RWRA 5AMVA 1VBLA 4XN3A 2NTBA 4MR0A 1PLUA 2O04A 4YEJA 4C2LA 2O0VA 4YELA 1PE9A 4OJLA 1KCCA 2BSPA 4YZXA 1PXZA 1EE6A 1BN8A 1KTWA 4AVZA 4OJ5A 1QJVA 2INVA 4XNFA 2NTQA 3EQNA 2ODLA 2EWEA 3GQ8A 3KRGA 2IQ7A 5C1EA 2UVFA 4XLCA 4U49A 4XORA 1OFLA 3T9GA 4XL9A 4PMHA 1O8HA 1O8KA 1WMRA 3SUCA 1AIRA 4YZAA 1X0CA 1OFMA 4W8QA 1GQ8A 3GQ9A 4XONA 2NT6A 4HWVA 2O17A 1RU4A 2PYGA 4I84A 4XKWA 4XLHA 3B8YA 2X3HA 3FY3A 1OGOX 1QCXA 4XOTA 2O1DA 4XMYA 1BHEA 1O8IA 4Z03A 2PECA 1O8LA 4NK8A 1DBOA 4XLAA 2VBEA 4Z06A 2O0WA 3VSVA 1O8EA 4Z05A 3VSTA 4MXNA 5C1CA 2X85A 1O8GA 3B90A 1O8MA 2NZMA 4W8TA 2NT9A 2QY1A 2Z8GA 2NSPA 1OOCA 3VSUA 4XQFA 2INUA 2X6XA 2NTPA 4NK6A 1JTAA 4OJ6A 4XKVA 1O88A 1KCDA 3LMWA 4YZ0A 4OZYA 4OJOA 4XN0A 3WWGA 3B4NA 1CZFA 2VBKA 4XOPA 3UW0A 3GQ7A 3JURA 1DBGA 2VJIA 1XG2A 4XM3A 3ZSCA 1JRGA 4OZZA 4XR6A 1H80A 1O8DA 4OJPA 3EQOA 1O8JA 1RMGA 2NSTA 3GRHA 1O8FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IB4 A;  2QXZ A;  3GQA A;  4W8R A;  2PYH A;  4URR A;  4W8S A;  1IA5 A;  4U4B A;  2QX3 A;  1HG8 A;  2UVE A;  4XLE A;  2VBM A;  1OGM X;  4EW9 A;  2VJJ A;  4YZQ A;  3VMV A;  1IDJ A;  1IDK A;  4XLF A;  2X6Y A;  3VMW A;  1NHC A;  1K5C A;  3ZPP A;  2X6W A;  1RWR A;  5AMV A;  1VBL A;  4XN3 A;  2NTB A;  4MR0 A;  1PLU A;  2O04 A;  4YEJ A;  4C2L A;  2O0V A;  4YEL A;  1PE9 A;  4OJL A;  1KCC A;  2BSP A;  4YZX A;  1PXZ A;  1EE6 A;  1BN8 A;  1KTW A;  4AVZ A;  4OJ5 A;  1QJV A;  2INV A;  4XNF A;  2NTQ A;  3EQN A;  2ODL A;  2EWE A;  3GQ8 A;  3KRG A;  2IQ7 A;  5C1E A;  2UVF A;  4XLC A;  4U49 A;  4XOR A;  1OFL A;  3T9G A;  4XL9 A;  4PMH A;  1O8H A;  1O8K A;  1WMR A;  3SUC A;  1AIR A;  4YZA A;  1X0C A;  1OFM A;  4W8Q A;  1GQ8 A;  3GQ9 A;  4XON A;  2NT6 A;  4HWV A;  2O17 A;  1RU4 A;  2PYG A;  4I84 A;  4XKW A;  4XLH A;  3B8Y A;  2X3H A;  3FY3 A;  1OGO X;  1QCX A;  4XOT A;  2O1D A;  4XMY A;  1BHE A;  1O8I A;  4Z03 A;  2PEC A;  1O8L A;  4NK8 A;  1DBO A;  4XLA A;  2VBE A;  4Z06 A;  2O0W A;  3VSV A;  1O8E A;  4Z05 A;  3VST A;  4MXN A;  5C1C A;  2X85 A;  1O8G A;  3B90 A;  1O8M A;  2NZM A;  4W8T A;  2NT9 A;  2QY1 A;  2Z8G A;  2NSP A;  1OOC A;  3VSU A;  4XQF A;  2INU A;  2X6X A;  2NTP A;  4NK6 A;  1JTA A;  4OJ6 A;  4XKV A;  1O88 A;  1KCD A;  3LMW A;  4YZ0 A;  4OZY A;  4OJO A;  4XN0 A;  3WWG A;  3B4N A;  1CZF A;  2VBK A;  4XOP A;  3UW0 A;  3GQ7 A;  3JUR A;  1DBG A;  2VJI A;  1XG2 A;  4XM3 A;  3ZSC A;  1JRG A;  4OZZ A;  4XR6 A;  1H80 A;  1O8D A;  4OJP A;  3EQO A;  1O8J A;  1RMG A;  2NST A;  3GRH A;  1O8F A; 
#chains in the Genus database with same CATH topology
 1IB4 A;  2QXZ A;  3GQA A;  4W8R A;  2PYH A;  4URR A;  2VFQ A;  4W8S A;  1IA5 A;  4U4B A;  1QRC A;  1K4Z A;  1HG8 A;  2QX3 A;  2UVE A;  2VBM A;  1OGM X;  4XLE A;  3AK5 A;  4EW9 A;  2VJJ A;  4YZQ A;  3VMV A;  1HF2 A;  1IDJ A;  3RIQ A;  1IDK A;  4XLF A;  2BX6 A;  1LLW A;  2X6Y A;  3VMW A;  4OPW A;  1EA0 A;  1NHC A;  1K5C A;  3ZPP A;  2X6W A;  1RWR A;  5AMV A;  1VBL A;  4XN3 A;  2NTB A;  4MR0 A;  5JMC B;  1PLU A;  2O04 A;  4YEJ A;  4C2L A;  1TYU A;  2O0V A;  4YEL A;  1PE9 A;  4OJL A;  1KCC A;  2BSP A;  4YFO A;  4YZX A;  3TH0 A;  1CLW A;  1PXZ A;  1EE6 A;  1QA3 A;  1BN8 A;  2XTY A;  1KTW A;  3BH7 B;  4AVZ A;  2W7Z A;  4OJ5 A;  1QJV A;  2INV A;  1K8F A;  3LYC A;  2XT2 A;  2NTQ A;  3EQN A;  4XNF A;  1QRB A;  2EWE A;  2ODL A;  3H09 A;  5DNS A;  3SQV A;  2YUH A;  3GQ8 A;  3KRG A;  2IQ7 A;  5C1E A;  1DAB A;  2UVF A;  2F3L A;  4XLC A;  4U49 A;  4XOR A;  1OFL A;  3T9G A;  4XL9 A;  4PMH A;  1O8H A;  1O8K A;  1WMR A;  2QZA A;  2V5I A;  3SUC A;  4YEI A;  1AIR A;  4YZA A;  1X0C A;  1OFM A;  1TYX A;  2XC1 A;  4W8Q A;  3SY2 A;  2XTW A;  2BM4 A;  2XT4 A;  1GQ8 A;  3GQ9 A;  4XON A;  2NT6 A;  2XTX A;  3NAW A;  4HWV A;  1L1I A;  2J8K A;  1KQ5 A;  2VFN A;  2O17 A;  1RU4 A;  2PYG A;  3DU1 X;  4I84 A;  4XKW A;  4XLH A;  3B8Y A;  2X3H A;  3FY3 A;  1OGO X;  1QCX A;  3NB2 A;  2O1D A;  4XOT A;  4KH3 A;  3N90 A;  2G0Y A;  3SZE A;  4XMY A;  1BHE A;  3BH6 B;  1O8I A;  1TYW A;  4Z03 A;  2PEC A;  1O8L A;  2VFM A;  4NK8 A;  3PET A;  1DBO A;  4XLA A;  2VBE A;  4Z06 A;  3ML3 A;  2O0W A;  5JLV C;  3VSV A;  1O8E A;  4Z05 A;  3VST A;  4MXN A;  5C1C A;  2X85 A;  2VFP A;  1O8G A;  1LM1 A;  3B90 A;  3PSS A;  3JX8 A;  1QA1 A;  1O8M A;  2IOU G;  2BM6 A;  2NZM A;  4JRA C;  3PSZ A;  2NT9 A;  4OM9 A;  2QY1 A;  2Z8G A;  4W8T A;  2NSP A;  2J8I A;  3N6Z A;  1OOC A;  3VSU A;  4XQF A;  3SYJ A;  2QYU A;  2INU A;  4YCQ A;  2X6X A;  2NTP A;  4NK6 A;  1JTA A;  4OJ6 A;  4XKV A;  1O88 A;  1KCD A;  2BM7 A;  1TYV A;  3LMW A;  4YZ0 A;  4OZY A;  2VFO A;  4OJO A;  3P4G A;  1QA2 A;  1TSP A;  2B0R A;  2BM5 A;  1QQ1 A;  4XN0 A;  2O6W A;  1OFD A;  3WWG A;  3B4N A;  1CZF A;  2VBK A;  4XOP A;  3UW0 A;  3GQ7 A;  3JUR A;  4YDT A;  3LJY A;  1DBG A;  2VJI A;  1XG2 A;  4XM3 A;  3ZSC A;  1JRG A;  4OZZ A;  4XR6 A;  1H80 A;  1O8D A;  4OJP A;  3EQO A;  4YC5 A;  1O8J A;  1RMG A;  1OFE A;  2NST A;  3GRH A;  4V02 C;  1EZG A;  1WXR A;  1O8F A;  1LLZ A; 
#chains in the Genus database with same CATH homology
 1IB4 A;  2QXZ A;  3GQA A;  4W8R A;  2PYH A;  4URR A;  4W8S A;  1IA5 A;  4U4B A;  2QX3 A;  1HG8 A;  2UVE A;  4XLE A;  2VBM A;  1OGM X;  4EW9 A;  2VJJ A;  4YZQ A;  3VMV A;  1IDJ A;  1IDK A;  4XLF A;  2X6Y A;  3VMW A;  1NHC A;  1K5C A;  3ZPP A;  2X6W A;  1RWR A;  5AMV A;  1VBL A;  4XN3 A;  2NTB A;  4MR0 A;  1PLU A;  2O04 A;  4YEJ A;  4C2L A;  2O0V A;  4YEL A;  1PE9 A;  4OJL A;  1KCC A;  2BSP A;  4YZX A;  1PXZ A;  1EE6 A;  1BN8 A;  1KTW A;  4AVZ A;  4OJ5 A;  1QJV A;  2INV A;  4XNF A;  2NTQ A;  3EQN A;  2ODL A;  2EWE A;  3GQ8 A;  3KRG A;  2IQ7 A;  5C1E A;  2UVF A;  4XLC A;  4U49 A;  4XOR A;  1OFL A;  3T9G A;  4XL9 A;  4PMH A;  1O8H A;  1O8K A;  1WMR A;  3SUC A;  1AIR A;  4YZA A;  1X0C A;  1OFM A;  4W8Q A;  1GQ8 A;  3GQ9 A;  4XON A;  2NT6 A;  4HWV A;  2O17 A;  1RU4 A;  2PYG A;  4I84 A;  4XKW A;  4XLH A;  3B8Y A;  2X3H A;  3FY3 A;  1OGO X;  1QCX A;  4XOT A;  2O1D A;  4XMY A;  1BHE A;  1O8I A;  4Z03 A;  2PEC A;  1O8L A;  4NK8 A;  1DBO A;  4XLA A;  2VBE A;  4Z06 A;  2O0W A;  3VSV A;  1O8E A;  4Z05 A;  3VST A;  4MXN A;  5C1C A;  2X85 A;  1O8G A;  3B90 A;  1O8M A;  2NZM A;  4W8T A;  2NT9 A;  2QY1 A;  2Z8G A;  2NSP A;  1OOC A;  3VSU A;  4XQF A;  2INU A;  2X6X A;  2NTP A;  4NK6 A;  1JTA A;  4OJ6 A;  4XKV A;  1O88 A;  1KCD A;  3LMW A;  4YZ0 A;  4OZY A;  4OJO A;  4XN0 A;  3WWG A;  3B4N A;  1CZF A;  2VBK A;  4XOP A;  3UW0 A;  3GQ7 A;  3JUR A;  1DBG A;  2VJI A;  1XG2 A;  4XM3 A;  3ZSC A;  1JRG A;  4OZZ A;  4XR6 A;  1H80 A;  1O8D A;  4OJP A;  3EQO A;  1O8J A;  1RMG A;  2NST A;  3GRH A;  1O8F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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