1JTAA

Crystal structure of pectate lyase a (c2 form)
Total Genus 128
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
sequence length
361
structure length
361
Chain Sequence
AELVSDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHNDTNSAQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNGSIFSDNGSVLNGSAVDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSGKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
molecule keywords pectate lyase A
publication title Structure of pectate lyase A: comparison to other isoforms.
pubmed doi rcsb
source organism Erwinia chrysanthemi
total genus 128
structure length 361
sequence length 361
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2001-08-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1jtaA00
3SUCA 1PXZA 2O0VA 2X3HA 2O17A 2O1DA 2NSTA 2VJJA 4NK6A 2EWEA 2INUA 4W8RA 3WWGA 1OFLA 4XLFA 3FY3A 1OOCA 1DBGA 1O8LA 1BN8A 4XKVA 2NTPA 3EQOA 3B4NA 2NT6A 1H80A 1GQ8A 2NTBA 4W8QA 4XLCA 4YEJA 5C1CA 4XLAA 1O8DA 4YZQA 4MR0A 1O88A 1QCXA 4XL9A 1O8JA 4YZAA 2INVA 1QJVA 4XN3A 1KTWA 2PYHA 4HWVA 4I84A 4OJPA 2X6XA 4XM3A 2UVFA 2X6WA 1BHEA 3B8YA 1KCDA 1OGMX 4XLHA 4XLEA 3VSVA 3B90A 5AMVA 1O8EA 2QY1A 3GQAA 2BSPA 2QX3A 3GQ9A 4U4BA 4Z06A 5C1EA 1KCCA 1VBLA 2IQ7A 1EE6A 3LMWA 1NHCA 3KRGA 4XOPA 4YELA 2NZMA 3JURA 4W8TA 3UW0A 4OJ6A 4XN0A 2VBEA 2O0WA 4XKWA 4NK8A 1X0CA 4C2LA 1AIRA 4U49A 4YZ0A 1O8IA 2VBMA 1IDKA 1PE9A 3ZPPA 1PLUA 4OJOA 1O8GA 1JRGA 3VMVA 1IA5A 4XR6A 3GRHA 1RU4A 4OJLA 2PYGA 3T9GA 4XORA 4Z05A 4EW9A 4XMYA 1O8MA 1OGOX 2UVEA 1O8KA 4MXNA 2NT9A 2O04A 1OFMA 3VSTA 3GQ7A 4OJ5A 4OZZA 1IB4A 4OZYA 2VBKA 1CZFA 1JTAA 2QXZA 2ODLA 2PECA 3VSUA 2X6YA 2VJIA 2NTQA 4YZXA 2NSPA 4W8SA 4XNFA 2X85A 1DBOA 4XOTA 4AVZA 2Z8GA 3EQNA 1K5CA 4XONA 3ZSCA 1O8FA 1XG2A 1WMRA 4XQFA 3VMWA 1RMGA 1IDJA 4Z03A 1RWRA 4PMHA 1HG8A 3GQ8A 1O8HA 4URRA
chains in the Genus database with same CATH superfamily
4YDTA 4OPWA 3SUCA 1PXZA 2O0VA 2X3HA 3BH6B 4YCQA 2O17A 2O1DA 2NSTA 2VJJA 3ML3A 4NK6A 4JRAC 2EWEA 2INUA 2YUHA 4W8RA 1OFLA 4XLFA 3WWGA 3FY3A 1K8FA 1OOCA 1LLZA 1DBGA 1O8LA 1BN8A 3PETA 4XKVA 2NTPA 1LM1A 3EQOA 3B4NA 3TH0A 2NT6A 1TYWA 2BM5A 3N6ZA 1OFEA 1H80A 1GQ8A 2NTBA 3LYCA 4W8QA 2BM6A 4XLCA 4YEJA 2BM4A 4XLAA 5C1CA 1O8DA 2XTXA 4MR0A 4YZQA 3SZEA 1O88A 1QCXA 2B0RA 4XL9A 1O8JA 4YZAA 5JMCB 2INVA 1QJVA 4XN3A 3PSZA 1OFDA 2QYUA 1KTWA 2PYHA 3AK5A 4HWVA 4I84A 1TSPA 4OJPA 2G0YA 2X6XA 1QA1A 4XM3A 2UVFA 2X6WA 1BHEA 4KH3A 3B8YA 1KCDA 1OGMX 4XLHA 4XLEA 3SY2A 3B90A 3VSVA 1K4ZA 1QRBA 2W7ZA 5AMVA 1O8EA 2QY1A 3GQAA 2XT2A 2BSPA 2QX3A 3GQ9A 4U4BA 4Z06A 5C1EA 1KCCA 1VBLA 2VFMA 2IQ7A 3SYJA 1LLWA 1EE6A 1L1IA 3LMWA 2XTWA 4YC5A 1TYUA 1NHCA 3KRGA 2VFOA 4XOPA 1HF2A 3P4GA 4YELA 2NZMA 3JURA 4W8TA 2F3LA 2J8KA 3UW0A 1QA3A 4OJ6A 4OM9A 4XN0A 2VBEA 2O0WA 4XKWA 4NK8A 1X0CA 4C2LA 1EZGA 1AIRA 4U49A 3N90A 3SQVA 4YZ0A 1O8IA 2VBMA 3NAWA 1IDKA 1PE9A 2BX6A 3PSSA 1PLUA 3ZPPA 4OJOA 1DABA 1O8GA 1JRGA 3VMVA 1KQ5A 1IA5A 2V5IA 4XR6A 3GRHA 1RU4A 4OJLA 2PYGA 3T9GA 4XORA 4Z05A 4EW9A 4YFOA 3BH7B 4XMYA 1O8MA 2J8IA 2O6WA 1OGOX 2UVEA 1O8KA 4MXNA 2QZAA 2NT9A 2O04A 1OFMA 3VSTA 3JX8A 3GQ7A 4OJ5A 4OZZA 1IB4A 4OZYA 2VBKA 1EA0A 1CZFA 1JTAA 2QXZA 2ODLA 1TYVA 2PECA 3VSUA 3DU1X 2BM7A 5DNSA 2X6YA 2VJIA 2NTQA 4YZXA 1QA2A 2VFPA 1TYXA 2NSPA 4W8SA 4XNFA 2X85A 3NB2A 2IOUG 4YEIA 1DBOA 2XT4A 4XOTA 2XTYA 4AVZA 1QQ1A 2Z8GA 3EQNA 3H09A 1K5CA 3RIQA 4XONA 3ZSCA 1O8FA 1WXRA 1XG2A 2XC1A 1WMRA 1QRCA 4XQFA 3VMWA 1RMGA 1CLWA 2VFNA 4V02C 1IDJA 4Z03A 1RWRA 4PMHA 1HG8A 2VFQA 3GQ8A 5JLVC 1O8HA 4URRA 3LJYA
chains in the Genus database with same CATH topology
3SUCA 1PXZA 2O0VA 2X3HA 2O17A 2O1DA 2NSTA 2VJJA 4NK6A 2EWEA 2INUA 4W8RA 3WWGA 1OFLA 4XLFA 3FY3A 1OOCA 1DBGA 1O8LA 1BN8A 4XKVA 2NTPA 3EQOA 3B4NA 2NT6A 1H80A 1GQ8A 2NTBA 4W8QA 4XLCA 4YEJA 5C1CA 4XLAA 1O8DA 4YZQA 4MR0A 1O88A 1QCXA 4XL9A 1O8JA 4YZAA 2INVA 1QJVA 4XN3A 1KTWA 2PYHA 4HWVA 4I84A 4OJPA 2X6XA 4XM3A 2UVFA 2X6WA 1BHEA 3B8YA 1KCDA 1OGMX 4XLHA 4XLEA 3VSVA 3B90A 5AMVA 1O8EA 2QY1A 3GQAA 2BSPA 2QX3A 3GQ9A 4U4BA 4Z06A 5C1EA 1KCCA 1VBLA 2IQ7A 1EE6A 3LMWA 1NHCA 3KRGA 4XOPA 4YELA 2NZMA 3JURA 4W8TA 3UW0A 4OJ6A 4XN0A 2VBEA 2O0WA 4XKWA 4NK8A 1X0CA 4C2LA 1AIRA 4U49A 4YZ0A 1O8IA 2VBMA 1IDKA 1PE9A 3ZPPA 1PLUA 4OJOA 1O8GA 1JRGA 3VMVA 1IA5A 4XR6A 3GRHA 1RU4A 4OJLA 2PYGA 3T9GA 4XORA 4Z05A 4EW9A 4XMYA 1O8MA 1OGOX 2UVEA 1O8KA 4MXNA 2NT9A 2O04A 1OFMA 3VSTA 3GQ7A 4OJ5A 4OZZA 1IB4A 4OZYA 2VBKA 1CZFA 1JTAA 2QXZA 2ODLA 2PECA 3VSUA 2X6YA 2VJIA 2NTQA 4YZXA 2NSPA 4W8SA 4XNFA 2X85A 1DBOA 4XOTA 4AVZA 2Z8GA 3EQNA 1K5CA 4XONA 3ZSCA 1O8FA 1XG2A 1WMRA 4XQFA 3VMWA 1RMGA 1IDJA 4Z03A 1RWRA 4PMHA 1HG8A 3GQ8A 1O8HA 4URRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SUC A;  1PXZ A;  2O0V A;  2X3H A;  2O17 A;  2O1D A;  2NST A;  2VJJ A;  4NK6 A;  2EWE A;  2INU A;  4W8R A;  3WWG A;  1OFL A;  4XLF A;  3FY3 A;  1OOC A;  1DBG A;  1O8L A;  1BN8 A;  4XKV A;  2NTP A;  3EQO A;  3B4N A;  2NT6 A;  1H80 A;  1GQ8 A;  2NTB A;  4W8Q A;  4XLC A;  4YEJ A;  5C1C A;  4XLA A;  1O8D A;  4YZQ A;  4MR0 A;  1O88 A;  1QCX A;  4XL9 A;  1O8J A;  4YZA A;  2INV A;  1QJV A;  4XN3 A;  1KTW A;  2PYH A;  4HWV A;  4I84 A;  4OJP A;  2X6X A;  4XM3 A;  2UVF A;  2X6W A;  1BHE A;  3B8Y A;  1KCD A;  1OGM X;  4XLH A;  4XLE A;  3VSV A;  3B90 A;  5AMV A;  1O8E A;  2QY1 A;  3GQA A;  2BSP A;  2QX3 A;  3GQ9 A;  4U4B A;  4Z06 A;  5C1E A;  1KCC A;  1VBL A;  2IQ7 A;  1EE6 A;  3LMW A;  1NHC A;  3KRG A;  4XOP A;  4YEL A;  2NZM A;  3JUR A;  4W8T A;  3UW0 A;  4OJ6 A;  4XN0 A;  2VBE A;  2O0W A;  4XKW A;  4NK8 A;  1X0C A;  4C2L A;  1AIR A;  4U49 A;  4YZ0 A;  1O8I A;  2VBM A;  1IDK A;  1PE9 A;  3ZPP A;  1PLU A;  4OJO A;  1O8G A;  1JRG A;  3VMV A;  1IA5 A;  4XR6 A;  3GRH A;  1RU4 A;  4OJL A;  2PYG A;  3T9G A;  4XOR A;  4Z05 A;  4EW9 A;  4XMY A;  1O8M A;  1OGO X;  2UVE A;  1O8K A;  4MXN A;  2NT9 A;  2O04 A;  1OFM A;  3VST A;  3GQ7 A;  4OJ5 A;  4OZZ A;  1IB4 A;  4OZY A;  2VBK A;  1CZF A;  1JTA A;  2QXZ A;  2ODL A;  2PEC A;  3VSU A;  2X6Y A;  2VJI A;  2NTQ A;  4YZX A;  2NSP A;  4W8S A;  4XNF A;  2X85 A;  1DBO A;  4XOT A;  4AVZ A;  2Z8G A;  3EQN A;  1K5C A;  4XON A;  3ZSC A;  1O8F A;  1XG2 A;  1WMR A;  4XQF A;  3VMW A;  1RMG A;  1IDJ A;  4Z03 A;  1RWR A;  4PMH A;  1HG8 A;  3GQ8 A;  1O8H A;  4URR A; 
#chains in the Genus database with same CATH topology
 4YDT A;  4OPW A;  3SUC A;  1PXZ A;  2O0V A;  2X3H A;  3BH6 B;  4YCQ A;  2O17 A;  2O1D A;  2NST A;  2VJJ A;  3ML3 A;  4NK6 A;  4JRA C;  2EWE A;  2INU A;  2YUH A;  4W8R A;  1OFL A;  4XLF A;  3WWG A;  3FY3 A;  1K8F A;  1OOC A;  1LLZ A;  1DBG A;  1O8L A;  1BN8 A;  3PET A;  4XKV A;  2NTP A;  1LM1 A;  3EQO A;  3B4N A;  3TH0 A;  2NT6 A;  1TYW A;  2BM5 A;  3N6Z A;  1OFE A;  1H80 A;  1GQ8 A;  2NTB A;  3LYC A;  4W8Q A;  2BM6 A;  4XLC A;  4YEJ A;  2BM4 A;  4XLA A;  5C1C A;  1O8D A;  2XTX A;  4MR0 A;  4YZQ A;  3SZE A;  1O88 A;  1QCX A;  2B0R A;  4XL9 A;  1O8J A;  4YZA A;  5JMC B;  2INV A;  1QJV A;  4XN3 A;  3PSZ A;  1OFD A;  2QYU A;  1KTW A;  2PYH A;  3AK5 A;  4HWV A;  4I84 A;  1TSP A;  4OJP A;  2G0Y A;  2X6X A;  1QA1 A;  4XM3 A;  2UVF A;  2X6W A;  1BHE A;  4KH3 A;  3B8Y A;  1KCD A;  1OGM X;  4XLH A;  4XLE A;  3SY2 A;  3B90 A;  3VSV A;  1K4Z A;  1QRB A;  2W7Z A;  5AMV A;  1O8E A;  2QY1 A;  3GQA A;  2XT2 A;  2BSP A;  2QX3 A;  3GQ9 A;  4U4B A;  4Z06 A;  5C1E A;  1KCC A;  1VBL A;  2VFM A;  2IQ7 A;  3SYJ A;  1LLW A;  1EE6 A;  1L1I A;  3LMW A;  2XTW A;  4YC5 A;  1TYU A;  1NHC A;  3KRG A;  2VFO A;  4XOP A;  1HF2 A;  3P4G A;  4YEL A;  2NZM A;  3JUR A;  4W8T A;  2F3L A;  2J8K A;  3UW0 A;  1QA3 A;  4OJ6 A;  4OM9 A;  4XN0 A;  2VBE A;  2O0W A;  4XKW A;  4NK8 A;  1X0C A;  4C2L A;  1EZG A;  1AIR A;  4U49 A;  3N90 A;  3SQV A;  4YZ0 A;  1O8I A;  2VBM A;  3NAW A;  1IDK A;  1PE9 A;  2BX6 A;  3PSS A;  1PLU A;  3ZPP A;  4OJO A;  1DAB A;  1O8G A;  1JRG A;  3VMV A;  1KQ5 A;  1IA5 A;  2V5I A;  4XR6 A;  3GRH A;  1RU4 A;  4OJL A;  2PYG A;  3T9G A;  4XOR A;  4Z05 A;  4EW9 A;  4YFO A;  3BH7 B;  4XMY A;  1O8M A;  2J8I A;  2O6W A;  1OGO X;  2UVE A;  1O8K A;  4MXN A;  2QZA A;  2NT9 A;  2O04 A;  1OFM A;  3VST A;  3JX8 A;  3GQ7 A;  4OJ5 A;  4OZZ A;  1IB4 A;  4OZY A;  2VBK A;  1EA0 A;  1CZF A;  1JTA A;  2QXZ A;  2ODL A;  1TYV A;  2PEC A;  3VSU A;  3DU1 X;  2BM7 A;  5DNS A;  2X6Y A;  2VJI A;  2NTQ A;  4YZX A;  1QA2 A;  2VFP A;  1TYX A;  2NSP A;  4W8S A;  4XNF A;  2X85 A;  3NB2 A;  2IOU G;  4YEI A;  1DBO A;  2XT4 A;  4XOT A;  2XTY A;  4AVZ A;  1QQ1 A;  2Z8G A;  3EQN A;  3H09 A;  1K5C A;  3RIQ A;  4XON A;  3ZSC A;  1O8F A;  1WXR A;  1XG2 A;  2XC1 A;  1WMR A;  1QRC A;  4XQF A;  3VMW A;  1RMG A;  1CLW A;  2VFN A;  4V02 C;  1IDJ A;  4Z03 A;  1RWR A;  4PMH A;  1HG8 A;  2VFQ A;  3GQ8 A;  5JLV C;  1O8H A;  4URR A;  3LJY A; 
#chains in the Genus database with same CATH homology
 3SUC A;  1PXZ A;  2O0V A;  2X3H A;  2O17 A;  2O1D A;  2NST A;  2VJJ A;  4NK6 A;  2EWE A;  2INU A;  4W8R A;  3WWG A;  1OFL A;  4XLF A;  3FY3 A;  1OOC A;  1DBG A;  1O8L A;  1BN8 A;  4XKV A;  2NTP A;  3EQO A;  3B4N A;  2NT6 A;  1H80 A;  1GQ8 A;  2NTB A;  4W8Q A;  4XLC A;  4YEJ A;  5C1C A;  4XLA A;  1O8D A;  4YZQ A;  4MR0 A;  1O88 A;  1QCX A;  4XL9 A;  1O8J A;  4YZA A;  2INV A;  1QJV A;  4XN3 A;  1KTW A;  2PYH A;  4HWV A;  4I84 A;  4OJP A;  2X6X A;  4XM3 A;  2UVF A;  2X6W A;  1BHE A;  3B8Y A;  1KCD A;  1OGM X;  4XLH A;  4XLE A;  3VSV A;  3B90 A;  5AMV A;  1O8E A;  2QY1 A;  3GQA A;  2BSP A;  2QX3 A;  3GQ9 A;  4U4B A;  4Z06 A;  5C1E A;  1KCC A;  1VBL A;  2IQ7 A;  1EE6 A;  3LMW A;  1NHC A;  3KRG A;  4XOP A;  4YEL A;  2NZM A;  3JUR A;  4W8T A;  3UW0 A;  4OJ6 A;  4XN0 A;  2VBE A;  2O0W A;  4XKW A;  4NK8 A;  1X0C A;  4C2L A;  1AIR A;  4U49 A;  4YZ0 A;  1O8I A;  2VBM A;  1IDK A;  1PE9 A;  3ZPP A;  1PLU A;  4OJO A;  1O8G A;  1JRG A;  3VMV A;  1IA5 A;  4XR6 A;  3GRH A;  1RU4 A;  4OJL A;  2PYG A;  3T9G A;  4XOR A;  4Z05 A;  4EW9 A;  4XMY A;  1O8M A;  1OGO X;  2UVE A;  1O8K A;  4MXN A;  2NT9 A;  2O04 A;  1OFM A;  3VST A;  3GQ7 A;  4OJ5 A;  4OZZ A;  1IB4 A;  4OZY A;  2VBK A;  1CZF A;  1JTA A;  2QXZ A;  2ODL A;  2PEC A;  3VSU A;  2X6Y A;  2VJI A;  2NTQ A;  4YZX A;  2NSP A;  4W8S A;  4XNF A;  2X85 A;  1DBO A;  4XOT A;  4AVZ A;  2Z8G A;  3EQN A;  1K5C A;  4XON A;  3ZSC A;  1O8F A;  1XG2 A;  1WMR A;  4XQF A;  3VMW A;  1RMG A;  1IDJ A;  4Z03 A;  1RWR A;  4PMH A;  1HG8 A;  3GQ8 A;  1O8H A;  4URR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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