5JMCB

Receptor binding domain of botulinum neurotoxin a in complex with rat sv2c
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
91
structure length
91
Chain Sequence
DKYANFSINFTMENQVHTGMEYDNGRFLGVKFKSVTFKDSVFKSCTFDDVTSVNTYFKNCTFIDTLFENTDFEPYKFIDSEFQNCSFLHNK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Botulinum neurotoxin type A
publication title N-linked glycosylation of SV2 is required for binding and uptake of botulinum neurotoxin A.
pubmed doi rcsb
source organism Clostridium botulinum
molecule tags Hydrolase
total genus 36
structure length 91
sequence length 91
chains with identical sequence D, F, H
ec nomenclature
pdb deposition date 2016-04-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF13599 Pentapeptide_4 Pentapeptide repeats (9 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.100 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 5jmcB00
2BM7A 2BM4A 2BM6A 3N90A 2J8IA 2F3LA 4JRAC 5JMCB 2G0YA 2W7ZA 2BM5A 5JLVC
chains in the Genus database with same CATH superfamily
2BM7A 1EZGA 3ML3A 1QA2A 3PSZA 3AK5A 4OJLA 1AIRA 4YZ0A 1CLWA 4XN3A 3BH6B 5JMCB 1HF2A 1K4ZA 2VFQA 2VFPA 2VJIA 2XC1A 1OFEA 1PLUA 1DBGA 4NK6A 1XG2A 1IB4A 4XONA 1LLZA 1QA1A 3ZPPA 1O8KA 2UVEA 4YZAA 1TYUA 4URRA 3PSSA 4OM9A 2BSPA 5DNSA 4AVZA 3EQNA 4YC5A 5C1EA 1KTWA 2BX6A 3SY2A 2VFMA 1JTAA 3JURA 2IOUG 3GQ8A 3B8YA 4XLFA 4Z05A 2O0VA 4Z03A 4XMYA 4XLEA 1O8DA 2J8IA 2X6WA 4YZXA 1IDKA 1PE9A 4YELA 2PYGA 2VJJA 1TSPA 4OPWA 1LLWA 2EWEA 1PXZA 2INVA 2NTQA 3B4NA 2VFNA 2PYHA 3P4GA 4OJ5A 3GRHA 3SZEA 3VMWA 3VSUA 1NHCA 4MR0A 4XKWA 2BM4A 1BN8A 2O6WA 2Z8GA 2O17A 4XLCA 1WMRA 3VMVA 1DBOA 3SYJA 2VBKA 4YEJA 1QRBA 4XQFA 4I84A 4YDTA 1IA5A 2NSPA 2X6YA 4W8RA 2V5IA 1RU4A 1DABA 3KRGA 4XKVA 3PETA 4XN0A 2YUHA 1VBLA 3N90A 2F3LA 2NTBA 2NTPA 1WXRA 1K5CA 2PECA 3VSVA 1BHEA 4OJPA 4W8TA 4YFOA 1QJVA 2VBEA 1IDJA 2BM6A 3GQAA 3UW0A 4Z06A 1H80A 4NK8A 4W8SA 4OJ6A 4PMHA 1O8FA 2J8KA 2XTWA 2X85A 2VFOA 1O88A 1TYXA 2IQ7A 4HWVA 1TYVA 2B0RA 4C2LA 1QA3A 3WWGA 1EA0A 3DU1X 1CZFA 4KH3A 1OGOX 2NT9A 1TYWA 5AMVA 1GQ8A 4OJOA 2XTXA 4XLHA 2G0YA 1OFDA 1QQ1A 1RWRA 3EQOA 4OZYA 2O0WA 4EW9A 3SQVA 3NAWA 1OGMX 4YCQA 3SUCA 4XOTA 1O8EA 4YZQA 2QX3A 2QZAA 2INUA 2W7ZA 3LMWA 1OOCA 3BH7B 2XTYA 2NSTA 2O1DA 1LM1A 3B90A 4U4BA 4XL9A 4XR6A 1EE6A 2QYUA 1O8LA 2VBMA 1OFLA 1JRGA 2X6XA 3H09A 4U49A 4V02C 2NT6A 4XM3A 5C1CA 4XOPA 3RIQA 1OFMA 1KQ5A 1KCDA 5JLVC 3LYCA 2XT4A 1HG8A 4YEIA 3T9GA 3FY3A 1RMGA 1X0CA 2X3HA 1O8GA 4MXNA 4JRAC 2BM5A 2XT2A 4OZZA 4XLAA 1L1IA 3ZSCA 1O8JA 2ODLA 2QY1A 2NZMA 1QRCA 3NB2A 3GQ7A 3N6ZA 3JX8A 1K8FA 1KCCA 3LJYA 2UVFA 4W8QA 1QCXA 4XORA 1O8HA 2QXZA 3TH0A 3VSTA 2O04A 1O8IA 1O8MA 4XNFA 3GQ9A
chains in the Genus database with same CATH topology
2BM7A 3ML3A 1QA2A 1TSPA 4OPWA 3AK5A 4V02C 2VFOA 4OJLA 1TYXA 1TYVA 1CLWA 2B0RA 2VFNA 3BH6B 3P4GA 1K4ZA 1HF2A 2VFQA 2VFPA 4OJ5A 1KQ5A 2XC1A 3RIQA 3SZEA 5JLVC 3LYCA 4KH3A 2BM4A 1QA3A 1TYWA 3SYJA 4OJOA 1QRBA 1QA1A 4JRAC 2G0YA 3H09A 2BM5A 1TYUA 4OM9A 2V5IA 1DABA 3PETA 2YUHA 1QRCA 3N90A 2F3LA 3JX8A 1K8FA 2BX6A 3LJYA 2VFMA 2W7ZA 3N6ZA 3BH7B 1WXRA 2IOUG 4OJPA 5JMCB 2BM6A 3TH0A 2J8IA 4OJ6A 1QQ1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BM7 A;  2BM4 A;  2BM6 A;  3N90 A;  2J8I A;  2F3L A;  4JRA C;  5JMC B;  2G0Y A;  2W7Z A;  2BM5 A;  5JLV C; 
#chains in the Genus database with same CATH topology
 2BM7 A;  1EZG A;  3ML3 A;  1QA2 A;  3PSZ A;  3AK5 A;  4OJL A;  1AIR A;  4YZ0 A;  1CLW A;  4XN3 A;  3BH6 B;  5JMC B;  1HF2 A;  1K4Z A;  2VFQ A;  2VFP A;  2VJI A;  2XC1 A;  1OFE A;  1PLU A;  1DBG A;  4NK6 A;  1XG2 A;  1IB4 A;  4XON A;  1LLZ A;  1QA1 A;  3ZPP A;  1O8K A;  2UVE A;  4YZA A;  1TYU A;  4URR A;  3PSS A;  4OM9 A;  2BSP A;  5DNS A;  4AVZ A;  3EQN A;  4YC5 A;  5C1E A;  1KTW A;  2BX6 A;  3SY2 A;  2VFM A;  1JTA A;  3JUR A;  2IOU G;  3GQ8 A;  3B8Y A;  4XLF A;  4Z05 A;  2O0V A;  4Z03 A;  4XMY A;  4XLE A;  1O8D A;  2J8I A;  2X6W A;  4YZX A;  1IDK A;  1PE9 A;  4YEL A;  2PYG A;  2VJJ A;  1TSP A;  4OPW A;  1LLW A;  2EWE A;  1PXZ A;  2INV A;  2NTQ A;  3B4N A;  2VFN A;  2PYH A;  3P4G A;  4OJ5 A;  3GRH A;  3SZE A;  3VMW A;  3VSU A;  1NHC A;  4MR0 A;  4XKW A;  2BM4 A;  1BN8 A;  2O6W A;  2Z8G A;  2O17 A;  4XLC A;  1WMR A;  3VMV A;  1DBO A;  3SYJ A;  2VBK A;  4YEJ A;  1QRB A;  4XQF A;  4I84 A;  4YDT A;  1IA5 A;  2NSP A;  2X6Y A;  4W8R A;  2V5I A;  1RU4 A;  1DAB A;  3KRG A;  4XKV A;  3PET A;  4XN0 A;  2YUH A;  1VBL A;  3N90 A;  2F3L A;  2NTB A;  2NTP A;  1WXR A;  1K5C A;  2PEC A;  3VSV A;  1BHE A;  4OJP A;  4W8T A;  4YFO A;  1QJV A;  2VBE A;  1IDJ A;  2BM6 A;  3GQA A;  3UW0 A;  4Z06 A;  1H80 A;  4NK8 A;  4W8S A;  4OJ6 A;  4PMH A;  1O8F A;  2J8K A;  2XTW A;  2X85 A;  2VFO A;  1O88 A;  1TYX A;  2IQ7 A;  4HWV A;  1TYV A;  2B0R A;  4C2L A;  1QA3 A;  3WWG A;  1EA0 A;  3DU1 X;  1CZF A;  4KH3 A;  1OGO X;  2NT9 A;  1TYW A;  5AMV A;  1GQ8 A;  4OJO A;  2XTX A;  4XLH A;  2G0Y A;  1OFD A;  1QQ1 A;  1RWR A;  3EQO A;  4OZY A;  2O0W A;  4EW9 A;  3SQV A;  3NAW A;  1OGM X;  4YCQ A;  3SUC A;  4XOT A;  1O8E A;  4YZQ A;  2QX3 A;  2QZA A;  2INU A;  2W7Z A;  3LMW A;  1OOC A;  3BH7 B;  2XTY A;  2NST A;  2O1D A;  1LM1 A;  3B90 A;  4U4B A;  4XL9 A;  4XR6 A;  1EE6 A;  2QYU A;  1O8L A;  2VBM A;  1OFL A;  1JRG A;  2X6X A;  3H09 A;  4U49 A;  4V02 C;  2NT6 A;  4XM3 A;  5C1C A;  4XOP A;  3RIQ A;  1OFM A;  1KQ5 A;  1KCD A;  5JLV C;  3LYC A;  2XT4 A;  1HG8 A;  4YEI A;  3T9G A;  3FY3 A;  1RMG A;  1X0C A;  2X3H A;  1O8G A;  4MXN A;  4JRA C;  2BM5 A;  2XT2 A;  4OZZ A;  4XLA A;  1L1I A;  3ZSC A;  1O8J A;  2ODL A;  2QY1 A;  2NZM A;  1QRC A;  3NB2 A;  3GQ7 A;  3N6Z A;  3JX8 A;  1K8F A;  1KCC A;  3LJY A;  2UVF A;  4W8Q A;  1QCX A;  4XOR A;  1O8H A;  2QXZ A;  3TH0 A;  3VST A;  2O04 A;  1O8I A;  1O8M A;  4XNF A;  3GQ9 A; 
#chains in the Genus database with same CATH homology
 2BM7 A;  3ML3 A;  1QA2 A;  1TSP A;  4OPW A;  3AK5 A;  4V02 C;  2VFO A;  4OJL A;  1TYX A;  1TYV A;  1CLW A;  2B0R A;  2VFN A;  3BH6 B;  3P4G A;  1K4Z A;  1HF2 A;  2VFQ A;  2VFP A;  4OJ5 A;  1KQ5 A;  2XC1 A;  3RIQ A;  3SZE A;  5JLV C;  3LYC A;  4KH3 A;  2BM4 A;  1QA3 A;  1TYW A;  3SYJ A;  4OJO A;  1QRB A;  1QA1 A;  4JRA C;  2G0Y A;  3H09 A;  2BM5 A;  1TYU A;  4OM9 A;  2V5I A;  1DAB A;  3PET A;  2YUH A;  1QRC A;  3N90 A;  2F3L A;  3JX8 A;  1K8F A;  2BX6 A;  3LJY A;  2VFM A;  2W7Z A;  3N6Z A;  3BH7 B;  1WXR A;  2IOU G;  4OJP A;  5JMC B;  2BM6 A;  3TH0 A;  2J8I A;  4OJ6 A;  1QQ1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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