5JMCB

Receptor binding domain of botulinum neurotoxin a in complex with rat sv2c
Total Genus 36
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
91
structure length
91
Chain Sequence
DKYANFSINFTMENQVHTGMEYDNGRFLGVKFKSVTFKDSVFKSCTFDDVTSVNTYFKNCTFIDTLFENTDFEPYKFIDSEFQNCSFLHNK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Clostridium botulinum
publication title N-linked glycosylation of SV2 is required for binding and uptake of botulinum neurotoxin A.
pubmed doi rcsb
molecule keywords Botulinum neurotoxin type A
total genus 36
structure length 91
sequence length 91
chains with identical sequence D, F, H
ec nomenclature
pdb deposition date 2016-04-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF13599 Pentapeptide_4 Pentapeptide repeats (9 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.100 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 5jmcB00
2F3LA 5JLVC 3N90A 2G0YA 2BM4A 2BM7A 2J8IA 4JRAC 2BM5A 2BM6A 2W7ZA 5JMCB
chains in the Genus database with same CATH superfamily
1WXRA 1PLUA 1KTWA 1CLWA 2X6WA 4XKVA 2J8IA 1O8EA 4XN0A 1KQ5A 2XT4A 1BN8A 2PYHA 2V5IA 2VBEA 4OJ6A 2UVEA 1DBGA 3VMWA 1IA5A 2XTWA 4XNFA 2BM7A 2VBMA 1TYXA 3BH7B 4OM9A 4OPWA 4OJOA 4U49A 1QJVA 4YEIA 2QZAA 3GQAA 4YFOA 4YEJA 3VSVA 1OFLA 5C1EA 3EQNA 1CZFA 1EZGA 2VJIA 2BSPA 1TSPA 1LLZA 3EQOA 4XLFA 2IQ7A 1HF2A 4U4BA 3JX8A 2XTYA 3T9GA 4XMYA 1DBOA 1EE6A 2BM6A 3H09A 2BX6A 3NAWA 3RIQA 1TYWA 1LLWA 2X6YA 3LJYA 2ODLA 1IDJA 3N6ZA 4W8RA 4YCQA 4YC5A 3UW0A 4XORA 4NK6A 3LYCA 3PSSA 5AMVA 3DU1X 2O17A 1AIRA 4YELA 2XT2A 3SQVA 4EW9A 5DNSA 1QCXA 1K8FA 4XONA 2QY1A 1XG2A 1OFDA 2BM5A 2INUA 2NZMA 3B4NA 4KH3A 3AK5A 2QYUA 3B90A 1RWRA 1H80A 1RU4A 2XC1A 4W8TA 3SUCA 2VFOA 1JRGA 3JURA 1PE9A 2NTPA 3SYJA 1O88A 4OZZA 3FY3A 4Z06A 2UVFA 4MR0A 3ZPPA 2XTXA 2VJJA 4XOTA 1KCDA 2INVA 2X3HA 2NT9A 2O0VA 2O0WA 1O8DA 1O8KA 2VBKA 2X85A 4PMHA 4XLAA 4YZQA 3VMVA 2VFPA 4XOPA 1KCCA 3BH6B 2F3LA 3P4GA 1O8FA 3SY2A 1O8IA 1EA0A 5C1CA 3NB2A 1OFEA 1QRCA 4W8SA 2B0RA 3GRHA 1DABA 2BM4A 1O8GA 3SZEA 4XLHA 2NSPA 4OJ5A 3VSTA 1O8JA 2YUHA 2VFMA 1PXZA 2PECA 1K5CA 4XKWA 3N90A 2J8KA 1L1IA 1BHEA 4URRA 1JTAA 1RMGA 4C2LA 4YZXA 4OJLA 1NHCA 2VFQA 1O8MA 1QQ1A 5JLVC 1OOCA 3PETA 1TYUA 4OZYA 2QXZA 2NSTA 2O04A 1VBLA 1IDKA 1OGOX 3KRGA 2PYGA 4V02C 2G0YA 4AVZA 1QA2A 2X6XA 1WMRA 2IOUG 3TH0A 2EWEA 4Z03A 2NTBA 2W7ZA 3VSUA 1X0CA 3LMWA 4MXNA 4YZAA 1GQ8A 3GQ7A 1OFMA 4HWVA 1IB4A 2O1DA 3ML3A 1TYVA 4XLEA 4XR6A 1QA3A 3WWGA 4NK8A 4W8QA 3PSZA 4XLCA 4YDTA 4YZ0A 1O8HA 4OJPA 1OGMX 4XN3A 1HG8A 3ZSCA 1O8LA 5JMCB 2NTQA 2NT6A 3B8YA 4XQFA 2VFNA 1K4ZA 4Z05A 1LM1A 4I84A 1QRBA 3GQ8A 4XL9A 4JRAC 2QX3A 2Z8GA 2O6WA 1QA1A 4XM3A 3GQ9A
chains in the Genus database with same CATH topology
2F3LA 3P4GA 4V02C 1WXRA 2G0YA 1CLWA 1QA2A 2J8IA 2IOUG 3TH0A 1KQ5A 2W7ZA 2V5IA 3LYCA 1QRCA 4OJ6A 2B0RA 1DABA 2BM4A 3SZEA 2BM7A 1K8FA 4OJ5A 1TYXA 2BM5A 3BH7B 1TYVA 3ML3A 2YUHA 2VFMA 4KH3A 4OM9A 4OPWA 4OJOA 1QA3A 3AK5A 2XC1A 3N90A 2VFOA 4OJPA 3SYJA 1TSPA 4OJLA 5JMCB 2VFQA 1QQ1A 1HF2A 1K4ZA 2VFNA 5JLVC 3PETA 1TYUA 1QRBA 3JX8A 4JRAC 3RIQA 3H09A 2BM6A 2BX6A 1QA1A 2VFPA 1TYWA 3BH6B 3LJYA 3N6ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2F3L A;  5JLV C;  3N90 A;  2G0Y A;  2BM4 A;  2BM7 A;  2J8I A;  4JRA C;  2BM5 A;  2BM6 A;  2W7Z A;  5JMC B; 
#chains in the Genus database with same CATH topology
 1WXR A;  1PLU A;  1KTW A;  1CLW A;  2X6W A;  4XKV A;  2J8I A;  1O8E A;  4XN0 A;  1KQ5 A;  2XT4 A;  1BN8 A;  2PYH A;  2V5I A;  2VBE A;  4OJ6 A;  2UVE A;  1DBG A;  3VMW A;  1IA5 A;  2XTW A;  4XNF A;  2BM7 A;  2VBM A;  1TYX A;  3BH7 B;  4OM9 A;  4OPW A;  4OJO A;  4U49 A;  1QJV A;  4YEI A;  2QZA A;  3GQA A;  4YFO A;  4YEJ A;  3VSV A;  1OFL A;  5C1E A;  3EQN A;  1CZF A;  1EZG A;  2VJI A;  2BSP A;  1TSP A;  1LLZ A;  3EQO A;  4XLF A;  2IQ7 A;  1HF2 A;  4U4B A;  3JX8 A;  2XTY A;  3T9G A;  4XMY A;  1DBO A;  1EE6 A;  2BM6 A;  3H09 A;  2BX6 A;  3NAW A;  3RIQ A;  1TYW A;  1LLW A;  2X6Y A;  3LJY A;  2ODL A;  1IDJ A;  3N6Z A;  4W8R A;  4YCQ A;  4YC5 A;  3UW0 A;  4XOR A;  4NK6 A;  3LYC A;  3PSS A;  5AMV A;  3DU1 X;  2O17 A;  1AIR A;  4YEL A;  2XT2 A;  3SQV A;  4EW9 A;  5DNS A;  1QCX A;  1K8F A;  4XON A;  2QY1 A;  1XG2 A;  1OFD A;  2BM5 A;  2INU A;  2NZM A;  3B4N A;  4KH3 A;  3AK5 A;  2QYU A;  3B90 A;  1RWR A;  1H80 A;  1RU4 A;  2XC1 A;  4W8T A;  3SUC A;  2VFO A;  1JRG A;  3JUR A;  1PE9 A;  2NTP A;  3SYJ A;  1O88 A;  4OZZ A;  3FY3 A;  4Z06 A;  2UVF A;  4MR0 A;  3ZPP A;  2XTX A;  2VJJ A;  4XOT A;  1KCD A;  2INV A;  2X3H A;  2NT9 A;  2O0V A;  2O0W A;  1O8D A;  1O8K A;  2VBK A;  2X85 A;  4PMH A;  4XLA A;  4YZQ A;  3VMV A;  2VFP A;  4XOP A;  1KCC A;  3BH6 B;  2F3L A;  3P4G A;  1O8F A;  3SY2 A;  1O8I A;  1EA0 A;  5C1C A;  3NB2 A;  1OFE A;  1QRC A;  4W8S A;  2B0R A;  3GRH A;  1DAB A;  2BM4 A;  1O8G A;  3SZE A;  4XLH A;  2NSP A;  4OJ5 A;  3VST A;  1O8J A;  2YUH A;  2VFM A;  1PXZ A;  2PEC A;  1K5C A;  4XKW A;  3N90 A;  2J8K A;  1L1I A;  1BHE A;  4URR A;  1JTA A;  1RMG A;  4C2L A;  4YZX A;  4OJL A;  1NHC A;  2VFQ A;  1O8M A;  1QQ1 A;  5JLV C;  1OOC A;  3PET A;  1TYU A;  4OZY A;  2QXZ A;  2NST A;  2O04 A;  1VBL A;  1IDK A;  1OGO X;  3KRG A;  2PYG A;  4V02 C;  2G0Y A;  4AVZ A;  1QA2 A;  2X6X A;  1WMR A;  2IOU G;  3TH0 A;  2EWE A;  4Z03 A;  2NTB A;  2W7Z A;  3VSU A;  1X0C A;  3LMW A;  4MXN A;  4YZA A;  1GQ8 A;  3GQ7 A;  1OFM A;  4HWV A;  1IB4 A;  2O1D A;  3ML3 A;  1TYV A;  4XLE A;  4XR6 A;  1QA3 A;  3WWG A;  4NK8 A;  4W8Q A;  3PSZ A;  4XLC A;  4YDT A;  4YZ0 A;  1O8H A;  4OJP A;  1OGM X;  4XN3 A;  1HG8 A;  3ZSC A;  1O8L A;  5JMC B;  2NTQ A;  2NT6 A;  3B8Y A;  4XQF A;  2VFN A;  1K4Z A;  4Z05 A;  1LM1 A;  4I84 A;  1QRB A;  3GQ8 A;  4XL9 A;  4JRA C;  2QX3 A;  2Z8G A;  2O6W A;  1QA1 A;  4XM3 A;  3GQ9 A; 
#chains in the Genus database with same CATH homology
 2F3L A;  3P4G A;  4V02 C;  1WXR A;  2G0Y A;  1CLW A;  1QA2 A;  2J8I A;  2IOU G;  3TH0 A;  1KQ5 A;  2W7Z A;  2V5I A;  3LYC A;  1QRC A;  4OJ6 A;  2B0R A;  1DAB A;  2BM4 A;  3SZE A;  2BM7 A;  1K8F A;  4OJ5 A;  1TYX A;  2BM5 A;  3BH7 B;  1TYV A;  3ML3 A;  2YUH A;  2VFM A;  4KH3 A;  4OM9 A;  4OPW A;  4OJO A;  1QA3 A;  3AK5 A;  2XC1 A;  3N90 A;  2VFO A;  4OJP A;  3SYJ A;  1TSP A;  4OJL A;  5JMC B;  2VFQ A;  1QQ1 A;  1HF2 A;  1K4Z A;  2VFN A;  5JLV C;  3PET A;  1TYU A;  1QRB A;  3JX8 A;  4JRA C;  3RIQ A;  3H09 A;  2BM6 A;  2BX6 A;  1QA1 A;  2VFP A;  1TYW A;  3BH6 B;  3LJY A;  3N6Z A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...