2VBEA

Tailspike protein of bacteriophage sf6
Total Genus 185
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
185
sequence length
510
structure length
510
Chain Sequence
FGPDLIEQLAQSGKYSQDNTKGDAMIGVKQPLPKAVLRTQHDKNKEAISILDFGVIDDGVTDNYQAIQNAIDAVASLPSGGELFIPASNQAVGYIVGSTLLIPGGVNIRGVGKASQLRAKSGLTGSVLRLSYDSDTIGRYLRNIRVTGNNTCNGIDTNITAEDSVIRQVYGWVFDNVMVNEVETAYLMQGLWHSKFIACQAGTCRVGLHFLGQCVSVSVSSCHFSRGNYSADESFGIRIQPQTYAWSSEAVRSEAIILDSETMCIGFKNAVYVHDCLDLHMEQLDLDYCGSTGVVIENVNGGFSFSNSWIAADADGTEQFTGIYFRTPTSTQSHKIVSGVHINTANKNTAANNQSIAIEQSAIFVFVSGCTLTGDEWAVNIVDINECVSFDKCIFNKPLRYLRSGGVSVTDCYLAGITEVQKPEGRYNTYRGCSGVPSVNGIINVPVAVGATSGSAAIPNPGNLTYRVRSLFGDPASSGDKVSVSGVTINVTRPSPVGVALPSMVEYLAI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords TAILSPIKE-PROTEIN
publication title An intersubunit active site between supercoiled parallel beta helices in the trimeric tailspike endorhamnosidase of Shigella flexneri Phage Sf6.
pubmed doi rcsb
source organism Bacteriophage sfvi
molecule tags Viral protein
total genus 185
structure length 510
sequence length 510
ec nomenclature
pdb deposition date 2007-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12708 Pectate_lyase_3 Pectate lyase superfamily protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2vbeA00
2QX3A 3GQ8A 1H80A 2NTQA 3B4NA 2X6YA 5AMVA 1KCDA 2PYGA 1O8LA 1O8KA 1VBLA 1K5CA 2VBEA 3WWGA 2INVA 2VJIA 1O8DA 2O1DA 4YZQA 4W8TA 4XKWA 4XOTA 4XLAA 1PXZA 2INUA 4YZXA 4XN3A 1AIRA 4OJOA 1QJVA 1KTWA 4XM3A 4W8SA 4W8QA 1O88A 4U4BA 2NT9A 3SUCA 1O8JA 4I84A 1KCCA 2ODLA 1JTAA 4XL9A 1BHEA 2NTBA 1GQ8A 1O8MA 4XLHA 3GQ9A 4XKVA 2VBKA 2BSPA 3KRGA 2X6WA 1CZFA 2NT6A 1PLUA 2EWEA 1PE9A 2QXZA 4OJ6A 1NHCA 4OJPA 4EW9A 1DBOA 3VSTA 3LMWA 1RU4A 4YEJA 2X3HA 1OFLA 3B8YA 2QY1A 1DBGA 5C1CA 1RMGA 4XLEA 3T9GA 2X6XA 4W8RA 3VMVA 3GRHA 1IDJA 3ZPPA 4MXNA 2O04A 2UVFA 1XG2A 1O8GA 2PYHA 2NTPA 4U49A 1RWRA 4XR6A 2NZMA 2O0WA 4NK8A 1OFMA 4Z03A 3EQNA 4OJ5A 4XNFA 2PECA 4NK6A 1X0CA 4PMHA 4XLCA 1EE6A 3VMWA 4XOPA 4HWVA 4YELA 1JRGA 1OOCA 4XMYA 3FY3A 1QCXA 3JURA 3B90A 1OGMX 4MR0A 4XN0A 3VSVA 2O17A 1O8HA 4Z06A 4XLFA 3GQAA 2IQ7A 4AVZA 3EQOA 3UW0A 4YZ0A 2O0VA 4YZAA 2UVEA 1OGOX 1O8EA 4XQFA 1O8IA 4OJLA 1IA5A 4OZZA 4Z05A 4XONA 4XORA 1IDKA 2X85A 5C1EA 3ZSCA 2NSTA 1HG8A 2VJJA 4C2LA 2VBMA 2Z8GA 1WMRA 3GQ7A 2NSPA 4URRA 1BN8A 1IB4A 3VSUA 4OZYA 1O8FA
chains in the Genus database with same CATH superfamily
2QX3A 3GQ8A 2VFOA 2W7ZA 1H80A 2NTQA 3B4NA 3N6ZA 2X6YA 5AMVA 1KCDA 2PYGA 3SQVA 1O8LA 1O8KA 1VBLA 1K5CA 2VBEA 3WWGA 2INVA 1K4ZA 2VJIA 1O8DA 2O1DA 4YZQA 4W8TA 4XKWA 3PSSA 4XOTA 4XLAA 1PXZA 2INUA 4YZXA 2VFPA 4OPWA 2BM6A 1AIRA 4OJOA 4XN3A 5JMCB 1QJVA 2IOUG 1KTWA 2YUHA 4XM3A 3SY2A 4W8SA 5JLVC 3LYCA 4W8QA 1EA0A 3NB2A 1O88A 4YFOA 1LLWA 4U4BA 1DABA 2NT9A 3SUCA 1O8JA 1TYUA 4I84A 1KCCA 2ODLA 1JTAA 2J8KA 4XL9A 1BHEA 2NTBA 1GQ8A 1O8MA 3NAWA 4XLHA 3GQ9A 4XKVA 2VBKA 2BSPA 3KRGA 2X6WA 2XTWA 1CZFA 2NT6A 3LJYA 1PLUA 1QRBA 1PE9A 2EWEA 2QXZA 4OJ6A 4OJPA 3SYJA 2O6WA 1NHCA 4EW9A 1DBOA 3VSTA 3LMWA 1RU4A 4YEJA 2X3HA 3JX8A 1OFLA 1OFEA 2XT2A 1LM1A 3B8YA 2QY1A 4V02C 3PSZA 4YEIA 1DBGA 5C1CA 1RMGA 1TYXA 4XLEA 2X6XA 3T9GA 1TYVA 4W8RA 3VMVA 4JRAC 1QA1A 3GRHA 1OFDA 3AK5A 1IDJA 3ZPPA 4MXNA 2O04A 5DNSA 1KQ5A 3N90A 2UVFA 2VFMA 3BH6B 1LLZA 2BM5A 3TH0A 1TSPA 4KH3A 3DU1X 1XG2A 1O8GA 2PYHA 2NTPA 4U49A 1RWRA 4XR6A 2NZMA 1QA3A 2O0WA 4NK8A 1OFMA 3P4GA 3EQNA 4Z03A 4OJ5A 4XNFA 2PECA 4NK6A 1X0CA 4PMHA 4XLCA 1EE6A 2QYUA 2VFNA 2QZAA 3VMWA 4XOPA 4HWVA 2J8IA 4YCQA 4YELA 1JRGA 1OOCA 4XMYA 3FY3A 1QCXA 1QQ1A 3JURA 3B90A 1OGMX 2XTYA 4MR0A 3RIQA 4XN0A 1QRCA 3VSVA 2XT4A 2O17A 1L1IA 1O8HA 2BX6A 4Z06A 4XLFA 3GQAA 2IQ7A 2V5IA 2G0YA 3BH7B 4AVZA 3EQOA 4YC5A 3UW0A 4YZ0A 2BM7A 2O0VA 4YZAA 1WXRA 2F3LA 2UVEA 1OGOX 1O8EA 4YDTA 4XQFA 1EZGA 1O8IA 4OJLA 3H09A 1HF2A 1IA5A 4OZZA 1QA2A 4Z05A 3PETA 4XONA 2VFQA 4XORA 1IDKA 2X85A 5C1EA 3ZSCA 2NSTA 1HG8A 2VJJA 4C2LA 2VBMA 2XC1A 2BM4A 2Z8GA 1CLWA 1WMRA 3GQ7A 2NSPA 4URRA 1K8FA 1BN8A 3SZEA 1IB4A 3VSUA 1TYWA 2B0RA 4OZYA 1O8FA 2XTXA 4OM9A 3ML3A
chains in the Genus database with same CATH topology
2QX3A 3GQ8A 1H80A 2NTQA 3B4NA 2X6YA 5AMVA 1KCDA 2PYGA 1O8LA 1O8KA 1VBLA 1K5CA 2VBEA 3WWGA 2INVA 2VJIA 1O8DA 2O1DA 4YZQA 4W8TA 4XKWA 4XOTA 4XLAA 1PXZA 2INUA 4YZXA 4XN3A 1AIRA 4OJOA 1QJVA 1KTWA 4XM3A 4W8SA 4W8QA 1O88A 4U4BA 2NT9A 3SUCA 1O8JA 4I84A 1KCCA 2ODLA 1JTAA 4XL9A 1BHEA 2NTBA 1GQ8A 1O8MA 4XLHA 3GQ9A 4XKVA 2VBKA 2BSPA 3KRGA 2X6WA 1CZFA 2NT6A 1PLUA 2EWEA 1PE9A 2QXZA 4OJ6A 1NHCA 4OJPA 4EW9A 1DBOA 3VSTA 3LMWA 1RU4A 4YEJA 2X3HA 1OFLA 3B8YA 2QY1A 1DBGA 5C1CA 1RMGA 4XLEA 3T9GA 2X6XA 4W8RA 3VMVA 3GRHA 1IDJA 3ZPPA 4MXNA 2O04A 2UVFA 1XG2A 1O8GA 2PYHA 2NTPA 4U49A 1RWRA 4XR6A 2NZMA 2O0WA 4NK8A 1OFMA 4Z03A 3EQNA 4OJ5A 4XNFA 2PECA 4NK6A 1X0CA 4PMHA 4XLCA 1EE6A 3VMWA 4XOPA 4HWVA 4YELA 1JRGA 1OOCA 4XMYA 3FY3A 1QCXA 3JURA 3B90A 1OGMX 4MR0A 4XN0A 3VSVA 2O17A 1O8HA 4Z06A 4XLFA 3GQAA 2IQ7A 4AVZA 3EQOA 3UW0A 4YZ0A 2O0VA 4YZAA 2UVEA 1OGOX 1O8EA 4XQFA 1O8IA 4OJLA 1IA5A 4OZZA 4Z05A 4XONA 4XORA 1IDKA 2X85A 5C1EA 3ZSCA 2NSTA 1HG8A 2VJJA 4C2LA 2VBMA 2Z8GA 1WMRA 3GQ7A 2NSPA 4URRA 1BN8A 1IB4A 3VSUA 4OZYA 1O8FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QX3 A;  3GQ8 A;  1H80 A;  2NTQ A;  3B4N A;  2X6Y A;  5AMV A;  1KCD A;  2PYG A;  1O8L A;  1O8K A;  1VBL A;  1K5C A;  2VBE A;  3WWG A;  2INV A;  2VJI A;  1O8D A;  2O1D A;  4YZQ A;  4W8T A;  4XKW A;  4XOT A;  4XLA A;  1PXZ A;  2INU A;  4YZX A;  4XN3 A;  1AIR A;  4OJO A;  1QJV A;  1KTW A;  4XM3 A;  4W8S A;  4W8Q A;  1O88 A;  4U4B A;  2NT9 A;  3SUC A;  1O8J A;  4I84 A;  1KCC A;  2ODL A;  1JTA A;  4XL9 A;  1BHE A;  2NTB A;  1GQ8 A;  1O8M A;  4XLH A;  3GQ9 A;  4XKV A;  2VBK A;  2BSP A;  3KRG A;  2X6W A;  1CZF A;  2NT6 A;  1PLU A;  2EWE A;  1PE9 A;  2QXZ A;  4OJ6 A;  1NHC A;  4OJP A;  4EW9 A;  1DBO A;  3VST A;  3LMW A;  1RU4 A;  4YEJ A;  2X3H A;  1OFL A;  3B8Y A;  2QY1 A;  1DBG A;  5C1C A;  1RMG A;  4XLE A;  3T9G A;  2X6X A;  4W8R A;  3VMV A;  3GRH A;  1IDJ A;  3ZPP A;  4MXN A;  2O04 A;  2UVF A;  1XG2 A;  1O8G A;  2PYH A;  2NTP A;  4U49 A;  1RWR A;  4XR6 A;  2NZM A;  2O0W A;  4NK8 A;  1OFM A;  4Z03 A;  3EQN A;  4OJ5 A;  4XNF A;  2PEC A;  4NK6 A;  1X0C A;  4PMH A;  4XLC A;  1EE6 A;  3VMW A;  4XOP A;  4HWV A;  4YEL A;  1JRG A;  1OOC A;  4XMY A;  3FY3 A;  1QCX A;  3JUR A;  3B90 A;  1OGM X;  4MR0 A;  4XN0 A;  3VSV A;  2O17 A;  1O8H A;  4Z06 A;  4XLF A;  3GQA A;  2IQ7 A;  4AVZ A;  3EQO A;  3UW0 A;  4YZ0 A;  2O0V A;  4YZA A;  2UVE A;  1OGO X;  1O8E A;  4XQF A;  1O8I A;  4OJL A;  1IA5 A;  4OZZ A;  4Z05 A;  4XON A;  4XOR A;  1IDK A;  2X85 A;  5C1E A;  3ZSC A;  2NST A;  1HG8 A;  2VJJ A;  4C2L A;  2VBM A;  2Z8G A;  1WMR A;  3GQ7 A;  2NSP A;  4URR A;  1BN8 A;  1IB4 A;  3VSU A;  4OZY A;  1O8F A; 
#chains in the Genus database with same CATH topology
 2QX3 A;  3GQ8 A;  2VFO A;  2W7Z A;  1H80 A;  2NTQ A;  3B4N A;  3N6Z A;  2X6Y A;  5AMV A;  1KCD A;  2PYG A;  3SQV A;  1O8L A;  1O8K A;  1VBL A;  1K5C A;  2VBE A;  3WWG A;  2INV A;  1K4Z A;  2VJI A;  1O8D A;  2O1D A;  4YZQ A;  4W8T A;  4XKW A;  3PSS A;  4XOT A;  4XLA A;  1PXZ A;  2INU A;  4YZX A;  2VFP A;  4OPW A;  2BM6 A;  1AIR A;  4OJO A;  4XN3 A;  5JMC B;  1QJV A;  2IOU G;  1KTW A;  2YUH A;  4XM3 A;  3SY2 A;  4W8S A;  5JLV C;  3LYC A;  4W8Q A;  1EA0 A;  3NB2 A;  1O88 A;  4YFO A;  1LLW A;  4U4B A;  1DAB A;  2NT9 A;  3SUC A;  1O8J A;  1TYU A;  4I84 A;  1KCC A;  2ODL A;  1JTA A;  2J8K A;  4XL9 A;  1BHE A;  2NTB A;  1GQ8 A;  1O8M A;  3NAW A;  4XLH A;  3GQ9 A;  4XKV A;  2VBK A;  2BSP A;  3KRG A;  2X6W A;  2XTW A;  1CZF A;  2NT6 A;  3LJY A;  1PLU A;  1QRB A;  1PE9 A;  2EWE A;  2QXZ A;  4OJ6 A;  4OJP A;  3SYJ A;  2O6W A;  1NHC A;  4EW9 A;  1DBO A;  3VST A;  3LMW A;  1RU4 A;  4YEJ A;  2X3H A;  3JX8 A;  1OFL A;  1OFE A;  2XT2 A;  1LM1 A;  3B8Y A;  2QY1 A;  4V02 C;  3PSZ A;  4YEI A;  1DBG A;  5C1C A;  1RMG A;  1TYX A;  4XLE A;  2X6X A;  3T9G A;  1TYV A;  4W8R A;  3VMV A;  4JRA C;  1QA1 A;  3GRH A;  1OFD A;  3AK5 A;  1IDJ A;  3ZPP A;  4MXN A;  2O04 A;  5DNS A;  1KQ5 A;  3N90 A;  2UVF A;  2VFM A;  3BH6 B;  1LLZ A;  2BM5 A;  3TH0 A;  1TSP A;  4KH3 A;  3DU1 X;  1XG2 A;  1O8G A;  2PYH A;  2NTP A;  4U49 A;  1RWR A;  4XR6 A;  2NZM A;  1QA3 A;  2O0W A;  4NK8 A;  1OFM A;  3P4G A;  3EQN A;  4Z03 A;  4OJ5 A;  4XNF A;  2PEC A;  4NK6 A;  1X0C A;  4PMH A;  4XLC A;  1EE6 A;  2QYU A;  2VFN A;  2QZA A;  3VMW A;  4XOP A;  4HWV A;  2J8I A;  4YCQ A;  4YEL A;  1JRG A;  1OOC A;  4XMY A;  3FY3 A;  1QCX A;  1QQ1 A;  3JUR A;  3B90 A;  1OGM X;  2XTY A;  4MR0 A;  3RIQ A;  4XN0 A;  1QRC A;  3VSV A;  2XT4 A;  2O17 A;  1L1I A;  1O8H A;  2BX6 A;  4Z06 A;  4XLF A;  3GQA A;  2IQ7 A;  2V5I A;  2G0Y A;  3BH7 B;  4AVZ A;  3EQO A;  4YC5 A;  3UW0 A;  4YZ0 A;  2BM7 A;  2O0V A;  4YZA A;  1WXR A;  2F3L A;  2UVE A;  1OGO X;  1O8E A;  4YDT A;  4XQF A;  1EZG A;  1O8I A;  4OJL A;  3H09 A;  1HF2 A;  1IA5 A;  4OZZ A;  1QA2 A;  4Z05 A;  3PET A;  4XON A;  2VFQ A;  4XOR A;  1IDK A;  2X85 A;  5C1E A;  3ZSC A;  2NST A;  1HG8 A;  2VJJ A;  4C2L A;  2VBM A;  2XC1 A;  2BM4 A;  2Z8G A;  1CLW A;  1WMR A;  3GQ7 A;  2NSP A;  4URR A;  1K8F A;  1BN8 A;  3SZE A;  1IB4 A;  3VSU A;  1TYW A;  2B0R A;  4OZY A;  1O8F A;  2XTX A;  4OM9 A;  3ML3 A; 
#chains in the Genus database with same CATH homology
 2QX3 A;  3GQ8 A;  1H80 A;  2NTQ A;  3B4N A;  2X6Y A;  5AMV A;  1KCD A;  2PYG A;  1O8L A;  1O8K A;  1VBL A;  1K5C A;  2VBE A;  3WWG A;  2INV A;  2VJI A;  1O8D A;  2O1D A;  4YZQ A;  4W8T A;  4XKW A;  4XOT A;  4XLA A;  1PXZ A;  2INU A;  4YZX A;  4XN3 A;  1AIR A;  4OJO A;  1QJV A;  1KTW A;  4XM3 A;  4W8S A;  4W8Q A;  1O88 A;  4U4B A;  2NT9 A;  3SUC A;  1O8J A;  4I84 A;  1KCC A;  2ODL A;  1JTA A;  4XL9 A;  1BHE A;  2NTB A;  1GQ8 A;  1O8M A;  4XLH A;  3GQ9 A;  4XKV A;  2VBK A;  2BSP A;  3KRG A;  2X6W A;  1CZF A;  2NT6 A;  1PLU A;  2EWE A;  1PE9 A;  2QXZ A;  4OJ6 A;  1NHC A;  4OJP A;  4EW9 A;  1DBO A;  3VST A;  3LMW A;  1RU4 A;  4YEJ A;  2X3H A;  1OFL A;  3B8Y A;  2QY1 A;  1DBG A;  5C1C A;  1RMG A;  4XLE A;  3T9G A;  2X6X A;  4W8R A;  3VMV A;  3GRH A;  1IDJ A;  3ZPP A;  4MXN A;  2O04 A;  2UVF A;  1XG2 A;  1O8G A;  2PYH A;  2NTP A;  4U49 A;  1RWR A;  4XR6 A;  2NZM A;  2O0W A;  4NK8 A;  1OFM A;  4Z03 A;  3EQN A;  4OJ5 A;  4XNF A;  2PEC A;  4NK6 A;  1X0C A;  4PMH A;  4XLC A;  1EE6 A;  3VMW A;  4XOP A;  4HWV A;  4YEL A;  1JRG A;  1OOC A;  4XMY A;  3FY3 A;  1QCX A;  3JUR A;  3B90 A;  1OGM X;  4MR0 A;  4XN0 A;  3VSV A;  2O17 A;  1O8H A;  4Z06 A;  4XLF A;  3GQA A;  2IQ7 A;  4AVZ A;  3EQO A;  3UW0 A;  4YZ0 A;  2O0V A;  4YZA A;  2UVE A;  1OGO X;  1O8E A;  4XQF A;  1O8I A;  4OJL A;  1IA5 A;  4OZZ A;  4Z05 A;  4XON A;  4XOR A;  1IDK A;  2X85 A;  5C1E A;  3ZSC A;  2NST A;  1HG8 A;  2VJJ A;  4C2L A;  2VBM A;  2Z8G A;  1WMR A;  3GQ7 A;  2NSP A;  4URR A;  1BN8 A;  1IB4 A;  3VSU A;  4OZY A;  1O8F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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