2VBEA

Tailspike protein of bacteriophage sf6
Total Genus 185
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
185
sequence length
510
structure length
510
Chain Sequence
FGPDLIEQLAQSGKYSQDNTKGDAMIGVKQPLPKAVLRTQHDKNKEAISILDFGVIDDGVTDNYQAIQNAIDAVASLPSGGELFIPASNQAVGYIVGSTLLIPGGVNIRGVGKASQLRAKSGLTGSVLRLSYDSDTIGRYLRNIRVTGNNTCNGIDTNITAEDSVIRQVYGWVFDNVMVNEVETAYLMQGLWHSKFIACQAGTCRVGLHFLGQCVSVSVSSCHFSRGNYSADESFGIRIQPQTYAWSSEAVRSEAIILDSETMCIGFKNAVYVHDCLDLHMEQLDLDYCGSTGVVIENVNGGFSFSNSWIAADADGTEQFTGIYFRTPTSTQSHKIVSGVHINTANKNTAANNQSIAIEQSAIFVFVSGCTLTGDEWAVNIVDINECVSFDKCIFNKPLRYLRSGGVSVTDCYLAGITEVQKPEGRYNTYRGCSGVPSVNGIINVPVAVGATSGSAAIPNPGNLTYRVRSLFGDPASSGDKVSVSGVTINVTRPSPVGVALPSMVEYLAI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
source organism Bacteriophage sfvi
publication title An intersubunit active site between supercoiled parallel beta helices in the trimeric tailspike endorhamnosidase of Shigella flexneri Phage Sf6.
pubmed doi rcsb
molecule keywords TAILSPIKE-PROTEIN
total genus 185
structure length 510
sequence length 510
ec nomenclature
pdb deposition date 2007-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12708 Pectate_lyase_3 Pectate lyase superfamily protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2vbeA00
5AMVA 4Z06A 4XKVA 3GQ7A 2O1DA 2X6YA 1X0CA 3VMWA 4XLHA 3ZSCA 4XOTA 1HG8A 1AIRA 3JURA 1CZFA 2QXZA 2VBMA 4OJ6A 4YZXA 4XR6A 4OJ5A 4XKWA 2QY1A 2X6WA 2O04A 1O8EA 4OJLA 2O0VA 1OFLA 1JRGA 4YZQA 1EE6A 3GRHA 1O8KA 1RWRA 4OZZA 1RU4A 2O0WA 1KCCA 1PLUA 2VJJA 1KCDA 1NHCA 1PXZA 1O88A 2NT9A 2ODLA 3EQOA 4NK8A 2VBEA 1O8LA 4XLFA 1OFMA 4XLAA 1H80A 3T9GA 1PE9A 4Z05A 1KTWA 2NZMA 2NSPA 2O17A 1IDKA 4XLEA 2X6XA 2NSTA 4W8QA 2VJIA 1O8HA 4AVZA 2PYHA 4U49A 1O8IA 2NTQA 1O8GA 4XNFA 1K5CA 1VBLA 1O8JA 1XG2A 2QX3A 4XOPA 4W8RA 4U4BA 3UW0A 4W8SA 1WMRA 3VMVA 1QJVA 4YELA 3ZPPA 4YZ0A 1O8DA 1IDJA 2INUA 2X85A 1DBOA 4NK6A 4XONA 3EQNA 2EWEA 1O8FA 2INVA 4XORA 4XQFA 4W8TA 3LMWA 4I84A 3B8YA 4PMHA 5C1CA 1BN8A 2UVFA 3FY3A 4OZYA 2VBKA 4XMYA 1IB4A 1DBGA 3GQ9A 1IA5A 2UVEA 3WWGA 2PECA 1QCXA 2Z8GA 3B90A 3B4NA 4XN0A 3VSTA 3VSUA 2NT6A 3VSVA 1BHEA 3GQAA 4Z03A 1OGOX 1JTAA 2IQ7A 3GQ8A 3KRGA 4URRA 4XN3A 4OJPA 1GQ8A 4HWVA 4MR0A 1RMGA 4C2LA 1OGMX 2NTPA 4OJOA 2BSPA 1O8MA 4XLCA 4EW9A 2X3HA 2PYGA 1OOCA 2NTBA 4YEJA 4XM3A 5C1EA 4MXNA 3SUCA 4XL9A 4YZAA
chains in the Genus database with same CATH superfamily
5AMVA 4Z06A 2QZAA 2J8IA 4XKVA 3GQ7A 2O1DA 3NB2A 2X6YA 1X0CA 2BM5A 3VMWA 3N90A 4XLHA 3ZSCA 4XOTA 1HG8A 1AIRA 3JURA 1CZFA 2QXZA 1QA1A 2VBMA 1LLZA 4OJ6A 4YZXA 4XR6A 4OJ5A 4XKWA 1QQ1A 2QY1A 2X6WA 1QRBA 2IOUG 2O04A 1O8EA 2O6WA 3DU1X 4OJLA 2O0VA 1OFLA 1JRGA 2B0RA 1OFDA 4YZQA 1EE6A 3GRHA 1O8KA 1RWRA 4JRAC 3BH7B 2F3LA 1RU4A 2O0WA 4OZZA 1KCCA 1PLUA 2VJJA 1KCDA 1NHCA 4KH3A 1PXZA 4YEIA 1O88A 3JX8A 2XTXA 2NT9A 1L1IA 2XT4A 2ODLA 3EQOA 3NAWA 4NK8A 2VBEA 4OPWA 1O8LA 4XLFA 1OFMA 3PETA 3BH6B 4XLAA 2YUHA 1H80A 4YDTA 3T9GA 1PE9A 5DNSA 1TSPA 4Z05A 1KTWA 2XTWA 3SZEA 1TYXA 1TYUA 2NZMA 1QA2A 2NSPA 2O17A 1IDKA 4XLEA 2X6XA 2NSTA 4W8QA 3LYCA 2VJIA 1O8HA 4YFOA 4AVZA 3PSZA 2PYHA 4U49A 4V02C 1O8IA 4OM9A 2NTQA 2V5IA 1EZGA 1O8GA 2VFMA 4XNFA 5JLVC 1K5CA 1VBLA 3TH0A 1O8JA 1XG2A 2QX3A 3PSSA 1WXRA 4XOPA 2BM7A 4U4BA 4W8RA 4W8SA 4YC5A 3UW0A 1WMRA 3VMVA 1QJVA 4YELA 1K8FA 3ZPPA 4YZ0A 1IDJA 1O8DA 3SYJA 1QRCA 2INUA 2VFPA 2X85A 1DBOA 4NK6A 4XONA 2XT2A 2EWEA 2XTYA 3EQNA 1O8FA 2BX6A 2INVA 3P4GA 4XORA 4XQFA 3AK5A 3SQVA 5JMCB 4W8TA 3LMWA 3N6ZA 4I84A 3ML3A 1TYVA 3B8YA 4PMHA 5C1CA 1BN8A 1OFEA 2UVFA 2XC1A 3FY3A 4OZYA 1KQ5A 2QYUA 2VBKA 4XMYA 1DBGA 3GQ9A 3SY2A 1IB4A 1IA5A 2UVEA 3WWGA 2PECA 1QCXA 2Z8GA 3B90A 1DABA 1HF2A 1QA3A 3B4NA 4XN0A 3VSTA 2W7ZA 3LJYA 3VSUA 2NT6A 2BM4A 2G0YA 3VSVA 1BHEA 1K4ZA 2VFQA 3GQAA 2J8KA 1CLWA 4Z03A 1OGOX 1LM1A 2BM6A 1JTAA 2IQ7A 3GQ8A 3KRGA 4YCQA 2VFOA 4URRA 4XN3A 4OJPA 1GQ8A 4HWVA 4MR0A 1RMGA 3RIQA 1EA0A 4C2LA 1OGMX 2NTPA 4OJOA 2BSPA 1O8MA 4XLCA 4EW9A 2X3HA 2PYGA 1OOCA 3H09A 2NTBA 2VFNA 4YEJA 4XM3A 5C1EA 4MXNA 3SUCA 4XL9A 1LLWA 4YZAA 1TYWA
chains in the Genus database with same CATH topology
5AMVA 4Z06A 4XKVA 3GQ7A 2O1DA 2X6YA 1X0CA 3VMWA 4XLHA 3ZSCA 4XOTA 1HG8A 1AIRA 3JURA 1CZFA 2QXZA 2VBMA 4OJ6A 4YZXA 4XR6A 4OJ5A 4XKWA 2QY1A 2X6WA 2O04A 1O8EA 4OJLA 2O0VA 1OFLA 1JRGA 4YZQA 1EE6A 3GRHA 1O8KA 1RWRA 4OZZA 1RU4A 2O0WA 1KCCA 1PLUA 2VJJA 1KCDA 1NHCA 1PXZA 1O88A 2NT9A 2ODLA 3EQOA 4NK8A 2VBEA 1O8LA 4XLFA 1OFMA 4XLAA 1H80A 3T9GA 1PE9A 4Z05A 1KTWA 2NZMA 2NSPA 2O17A 1IDKA 4XLEA 2X6XA 2NSTA 4W8QA 2VJIA 1O8HA 4AVZA 2PYHA 4U49A 1O8IA 2NTQA 1O8GA 4XNFA 1K5CA 1VBLA 1O8JA 1XG2A 2QX3A 4XOPA 4W8RA 4U4BA 3UW0A 4W8SA 1WMRA 3VMVA 1QJVA 4YELA 3ZPPA 4YZ0A 1O8DA 1IDJA 2INUA 2X85A 1DBOA 4NK6A 4XONA 3EQNA 2EWEA 1O8FA 2INVA 4XORA 4XQFA 4W8TA 3LMWA 4I84A 3B8YA 4PMHA 5C1CA 1BN8A 2UVFA 3FY3A 4OZYA 2VBKA 4XMYA 1IB4A 1DBGA 3GQ9A 1IA5A 2UVEA 3WWGA 2PECA 1QCXA 2Z8GA 3B90A 3B4NA 4XN0A 3VSTA 3VSUA 2NT6A 3VSVA 1BHEA 3GQAA 4Z03A 1OGOX 1JTAA 2IQ7A 3GQ8A 3KRGA 4URRA 4XN3A 4OJPA 1GQ8A 4HWVA 4MR0A 1RMGA 4C2LA 1OGMX 2NTPA 4OJOA 2BSPA 1O8MA 4XLCA 4EW9A 2X3HA 2PYGA 1OOCA 2NTBA 4YEJA 4XM3A 5C1EA 4MXNA 3SUCA 4XL9A 4YZAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AMV A;  4Z06 A;  4XKV A;  3GQ7 A;  2O1D A;  2X6Y A;  1X0C A;  3VMW A;  4XLH A;  3ZSC A;  4XOT A;  1HG8 A;  1AIR A;  3JUR A;  1CZF A;  2QXZ A;  2VBM A;  4OJ6 A;  4YZX A;  4XR6 A;  4OJ5 A;  4XKW A;  2QY1 A;  2X6W A;  2O04 A;  1O8E A;  4OJL A;  2O0V A;  1OFL A;  1JRG A;  4YZQ A;  1EE6 A;  3GRH A;  1O8K A;  1RWR A;  4OZZ A;  1RU4 A;  2O0W A;  1KCC A;  1PLU A;  2VJJ A;  1KCD A;  1NHC A;  1PXZ A;  1O88 A;  2NT9 A;  2ODL A;  3EQO A;  4NK8 A;  2VBE A;  1O8L A;  4XLF A;  1OFM A;  4XLA A;  1H80 A;  3T9G A;  1PE9 A;  4Z05 A;  1KTW A;  2NZM A;  2NSP A;  2O17 A;  1IDK A;  4XLE A;  2X6X A;  2NST A;  4W8Q A;  2VJI A;  1O8H A;  4AVZ A;  2PYH A;  4U49 A;  1O8I A;  2NTQ A;  1O8G A;  4XNF A;  1K5C A;  1VBL A;  1O8J A;  1XG2 A;  2QX3 A;  4XOP A;  4W8R A;  4U4B A;  3UW0 A;  4W8S A;  1WMR A;  3VMV A;  1QJV A;  4YEL A;  3ZPP A;  4YZ0 A;  1O8D A;  1IDJ A;  2INU A;  2X85 A;  1DBO A;  4NK6 A;  4XON A;  3EQN A;  2EWE A;  1O8F A;  2INV A;  4XOR A;  4XQF A;  4W8T A;  3LMW A;  4I84 A;  3B8Y A;  4PMH A;  5C1C A;  1BN8 A;  2UVF A;  3FY3 A;  4OZY A;  2VBK A;  4XMY A;  1IB4 A;  1DBG A;  3GQ9 A;  1IA5 A;  2UVE A;  3WWG A;  2PEC A;  1QCX A;  2Z8G A;  3B90 A;  3B4N A;  4XN0 A;  3VST A;  3VSU A;  2NT6 A;  3VSV A;  1BHE A;  3GQA A;  4Z03 A;  1OGO X;  1JTA A;  2IQ7 A;  3GQ8 A;  3KRG A;  4URR A;  4XN3 A;  4OJP A;  1GQ8 A;  4HWV A;  4MR0 A;  1RMG A;  4C2L A;  1OGM X;  2NTP A;  4OJO A;  2BSP A;  1O8M A;  4XLC A;  4EW9 A;  2X3H A;  2PYG A;  1OOC A;  2NTB A;  4YEJ A;  4XM3 A;  5C1E A;  4MXN A;  3SUC A;  4XL9 A;  4YZA A; 
#chains in the Genus database with same CATH topology
 5AMV A;  4Z06 A;  2QZA A;  2J8I A;  4XKV A;  3GQ7 A;  2O1D A;  3NB2 A;  2X6Y A;  1X0C A;  2BM5 A;  3VMW A;  3N90 A;  4XLH A;  3ZSC A;  4XOT A;  1HG8 A;  1AIR A;  3JUR A;  1CZF A;  2QXZ A;  1QA1 A;  2VBM A;  1LLZ A;  4OJ6 A;  4YZX A;  4XR6 A;  4OJ5 A;  4XKW A;  1QQ1 A;  2QY1 A;  2X6W A;  1QRB A;  2IOU G;  2O04 A;  1O8E A;  2O6W A;  3DU1 X;  4OJL A;  2O0V A;  1OFL A;  1JRG A;  2B0R A;  1OFD A;  4YZQ A;  1EE6 A;  3GRH A;  1O8K A;  1RWR A;  4JRA C;  3BH7 B;  2F3L A;  1RU4 A;  2O0W A;  4OZZ A;  1KCC A;  1PLU A;  2VJJ A;  1KCD A;  1NHC A;  4KH3 A;  1PXZ A;  4YEI A;  1O88 A;  3JX8 A;  2XTX A;  2NT9 A;  1L1I A;  2XT4 A;  2ODL A;  3EQO A;  3NAW A;  4NK8 A;  2VBE A;  4OPW A;  1O8L A;  4XLF A;  1OFM A;  3PET A;  3BH6 B;  4XLA A;  2YUH A;  1H80 A;  4YDT A;  3T9G A;  1PE9 A;  5DNS A;  1TSP A;  4Z05 A;  1KTW A;  2XTW A;  3SZE A;  1TYX A;  1TYU A;  2NZM A;  1QA2 A;  2NSP A;  2O17 A;  1IDK A;  4XLE A;  2X6X A;  2NST A;  4W8Q A;  3LYC A;  2VJI A;  1O8H A;  4YFO A;  4AVZ A;  3PSZ A;  2PYH A;  4U49 A;  4V02 C;  1O8I A;  4OM9 A;  2NTQ A;  2V5I A;  1EZG A;  1O8G A;  2VFM A;  4XNF A;  5JLV C;  1K5C A;  1VBL A;  3TH0 A;  1O8J A;  1XG2 A;  2QX3 A;  3PSS A;  1WXR A;  4XOP A;  2BM7 A;  4U4B A;  4W8R A;  4W8S A;  4YC5 A;  3UW0 A;  1WMR A;  3VMV A;  1QJV A;  4YEL A;  1K8F A;  3ZPP A;  4YZ0 A;  1IDJ A;  1O8D A;  3SYJ A;  1QRC A;  2INU A;  2VFP A;  2X85 A;  1DBO A;  4NK6 A;  4XON A;  2XT2 A;  2EWE A;  2XTY A;  3EQN A;  1O8F A;  2BX6 A;  2INV A;  3P4G A;  4XOR A;  4XQF A;  3AK5 A;  3SQV A;  5JMC B;  4W8T A;  3LMW A;  3N6Z A;  4I84 A;  3ML3 A;  1TYV A;  3B8Y A;  4PMH A;  5C1C A;  1BN8 A;  1OFE A;  2UVF A;  2XC1 A;  3FY3 A;  4OZY A;  1KQ5 A;  2QYU A;  2VBK A;  4XMY A;  1DBG A;  3GQ9 A;  3SY2 A;  1IB4 A;  1IA5 A;  2UVE A;  3WWG A;  2PEC A;  1QCX A;  2Z8G A;  3B90 A;  1DAB A;  1HF2 A;  1QA3 A;  3B4N A;  4XN0 A;  3VST A;  2W7Z A;  3LJY A;  3VSU A;  2NT6 A;  2BM4 A;  2G0Y A;  3VSV A;  1BHE A;  1K4Z A;  2VFQ A;  3GQA A;  2J8K A;  1CLW A;  4Z03 A;  1OGO X;  1LM1 A;  2BM6 A;  1JTA A;  2IQ7 A;  3GQ8 A;  3KRG A;  4YCQ A;  2VFO A;  4URR A;  4XN3 A;  4OJP A;  1GQ8 A;  4HWV A;  4MR0 A;  1RMG A;  3RIQ A;  1EA0 A;  4C2L A;  1OGM X;  2NTP A;  4OJO A;  2BSP A;  1O8M A;  4XLC A;  4EW9 A;  2X3H A;  2PYG A;  1OOC A;  3H09 A;  2NTB A;  2VFN A;  4YEJ A;  4XM3 A;  5C1E A;  4MXN A;  3SUC A;  4XL9 A;  1LLW A;  4YZA A;  1TYW A; 
#chains in the Genus database with same CATH homology
 5AMV A;  4Z06 A;  4XKV A;  3GQ7 A;  2O1D A;  2X6Y A;  1X0C A;  3VMW A;  4XLH A;  3ZSC A;  4XOT A;  1HG8 A;  1AIR A;  3JUR A;  1CZF A;  2QXZ A;  2VBM A;  4OJ6 A;  4YZX A;  4XR6 A;  4OJ5 A;  4XKW A;  2QY1 A;  2X6W A;  2O04 A;  1O8E A;  4OJL A;  2O0V A;  1OFL A;  1JRG A;  4YZQ A;  1EE6 A;  3GRH A;  1O8K A;  1RWR A;  4OZZ A;  1RU4 A;  2O0W A;  1KCC A;  1PLU A;  2VJJ A;  1KCD A;  1NHC A;  1PXZ A;  1O88 A;  2NT9 A;  2ODL A;  3EQO A;  4NK8 A;  2VBE A;  1O8L A;  4XLF A;  1OFM A;  4XLA A;  1H80 A;  3T9G A;  1PE9 A;  4Z05 A;  1KTW A;  2NZM A;  2NSP A;  2O17 A;  1IDK A;  4XLE A;  2X6X A;  2NST A;  4W8Q A;  2VJI A;  1O8H A;  4AVZ A;  2PYH A;  4U49 A;  1O8I A;  2NTQ A;  1O8G A;  4XNF A;  1K5C A;  1VBL A;  1O8J A;  1XG2 A;  2QX3 A;  4XOP A;  4W8R A;  4U4B A;  3UW0 A;  4W8S A;  1WMR A;  3VMV A;  1QJV A;  4YEL A;  3ZPP A;  4YZ0 A;  1O8D A;  1IDJ A;  2INU A;  2X85 A;  1DBO A;  4NK6 A;  4XON A;  3EQN A;  2EWE A;  1O8F A;  2INV A;  4XOR A;  4XQF A;  4W8T A;  3LMW A;  4I84 A;  3B8Y A;  4PMH A;  5C1C A;  1BN8 A;  2UVF A;  3FY3 A;  4OZY A;  2VBK A;  4XMY A;  1IB4 A;  1DBG A;  3GQ9 A;  1IA5 A;  2UVE A;  3WWG A;  2PEC A;  1QCX A;  2Z8G A;  3B90 A;  3B4N A;  4XN0 A;  3VST A;  3VSU A;  2NT6 A;  3VSV A;  1BHE A;  3GQA A;  4Z03 A;  1OGO X;  1JTA A;  2IQ7 A;  3GQ8 A;  3KRG A;  4URR A;  4XN3 A;  4OJP A;  1GQ8 A;  4HWV A;  4MR0 A;  1RMG A;  4C2L A;  1OGM X;  2NTP A;  4OJO A;  2BSP A;  1O8M A;  4XLC A;  4EW9 A;  2X3H A;  2PYG A;  1OOC A;  2NTB A;  4YEJ A;  4XM3 A;  5C1E A;  4MXN A;  3SUC A;  4XL9 A;  4YZA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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