2IOUG

Major tropism determinant p1 (mtd-p1) variant complexed with bordetella brochiseptica virulence factor pertactin extracellular domain (prn-e).
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
535
structure length
508
Chain Sequence
DWNNQSIIKAGERQHGIHIKQSDGAGVRTATGTTIKVSGRQAQGVLLENPAAELRFQNGSVTSSGQLFDEGVRRFLGTVTVKAGKLVADHATLANVSDTRDDDGIALYVAGEQAQASIADSTLQGAGGVRVERGANVTVQRSTIVDGGLHIGTLQPLQPEDLPPSRVVLGDTSVTAVPASGAPAAVSVFGANELTVDGGHITGGRAAGVAAMDGAIVHLQRATIRRGGWYGVDVSDSTVDLAQSIVEAPQLGAAIRAGRGARVTVSGGSLSAPHGNVIETGGGARRFPPPASPLSITLQAGARAQGRALLYRVLPEPVKLTLAGGAQGQGDIVATELPPIPGASSGPLDVALASQARWTGATRAVDSLSIDNATWVMTDNSNVGALRLASDGSVDFQQPAEAGRFKVLMVDTLAGSGLFRMNVFADLGLSDKLVVMRDASGQHRLWVRNSGSEPASANTMLLVQTPRGSAATFTLANKDGKVDIGTYRYRLAANGNGQWSLVGAKAPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Selective Ligand Recognition by a Diversity-Generating Retroelement Variable Protein
pubmed doi rcsb
source organism Bordetella phage bpp-1
molecule tags Viral protein/membrane protein
molecule keywords Major Tropism Determinant P1
total genus 161
structure length 508
sequence length 535
chains with identical sequence H
ec nomenclature
pdb deposition date 2006-10-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF03212 Pertactin Pertactin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2iouG00
3H09A 3ML3A 2VFPA 1TSPA 4OM9A 1WXRA 1QA1A 2VFNA 2VFOA 1TYVA 1QQ1A 3AK5A 3RIQA 4KH3A 1QRBA 1TYXA 3SYJA 2VFQA 2V5IA 2IOUG 3TH0A 2VFMA 1DABA 3SZEA 1QA2A 1TYWA 2XC1A 1TYUA 1QA3A 1CLWA 1QRCA
chains in the Genus database with same CATH superfamily
3LMWA 4Z06A 1EA0A 4NK6A 3ML3A 1H80A 4YDTA 3EQOA 5DNSA 4OPWA 1KCCA 3N90A 1LLWA 4XKVA 1QA1A 4W8TA 4Z03A 2PECA 3PETA 4Z05A 3VSUA 3B90A 4YZ0A 2X85A 3GRHA 4W8SA 2INVA 1RWRA 5JLVC 2VJJA 1OGOX 2O04A 3GQAA 3UW0A 2NTQA 2Z8GA 4PMHA 2VFMA 1JRGA 1PE9A 1O8FA 3SZEA 1DABA 1QA2A 1CZFA 2QY1A 2X6WA 3B8YA 4YEJA 2QZAA 2XT4A 1XG2A 1BN8A 1O8GA 3LJYA 3ZPPA 2O6WA 3NAWA 4XL9A 2B0RA 3H09A 3BH7B 2QXZA 4XLCA 4XQFA 5C1CA 1DBGA 2VFPA 2PYGA 2NSTA 4XKWA 2NTPA 2UVEA 2BSPA 4XN3A 2VBKA 2QYUA 2W7ZA 1LLZA 2BM4A 2EWEA 1IB4A 3BH6B 1O88A 2O1DA 3EQNA 1QRBA 1DBOA 1IDKA 4U4BA 1TYXA 2ODLA 3GQ7A 2VFQA 4XNFA 5C1EA 3T9GA 3SYJA 4OZYA 1O8MA 4XOPA 3VSVA 2X6XA 1K8FA 2NSPA 4OJLA 4W8QA 2BM6A 4XN0A 1PXZA 4OJ6A 4YZQA 1L1IA 1PLUA 2IQ7A 1TYUA 4XM3A 1QA3A 4V02C 2G0YA 1GQ8A 1CLWA 2YUHA 2VBEA 4XLAA 1QRCA 2BM5A 3DU1X 2F3LA 3JX8A 1O8JA 1KCDA 2VBMA 2X3HA 1O8EA 1O8IA 4C2LA 5JMCB 3LYCA 1IA5A 4HWVA 4OM9A 4XLFA 4YEIA 4EW9A 2VFNA 2XTXA 3SUCA 2J8IA 2VFOA 3ZSCA 1KQ5A 4OJOA 3WWGA 4XMYA 4XORA 2NT6A 1EE6A 1K5CA 4I84A 1EZGA 3RIQA 4KH3A 1O8LA 2O0WA 3SQVA 4OJPA 4YZXA 4JRAC 3N6ZA 3TH0A 4U49A 3B4NA 1OFLA 2XT2A 3KRGA 1O8KA 4YFOA 1HG8A 1RMGA 2BM7A 2NT9A 3NB2A 1HF2A 4YELA 3FY3A 4XOTA 1NHCA 2XTWA 4XR6A 5AMVA 1WMRA 4W8RA 2XTYA 3GQ8A 3P4GA 3VSTA 2VJIA 1AIRA 1OFMA 2J8KA 4NK8A 2X6YA 1QCXA 1TSPA 3PSZA 4URRA 2O17A 4YC5A 1WXRA 3VMVA 4OZZA 3GQ9A 1LM1A 1QJVA 1RU4A 1TYVA 1OFDA 2INUA 1QQ1A 2NZMA 2O0VA 2QX3A 4XLEA 4YCQA 1OOCA 1OFEA 3JURA 3AK5A 2NTBA 4OJ5A 2V5IA 1OGMX 2IOUG 2PYHA 4MR0A 4MXNA 4AVZA 3SY2A 3PSSA 1BHEA 4XLHA 4XONA 1IDJA 1TYWA 1K4ZA 2XC1A 1JTAA 1X0CA 4YZAA 3VMWA 1O8DA 2UVFA 2BX6A 1VBLA 1O8HA 1KTWA
chains in the Genus database with same CATH topology
2B0RA 2F3LA 3H09A 3BH7B 3JX8A 3P4GA 3ML3A 2VFPA 5JMCB 1TSPA 3LYCA 4OPWA 3N90A 4OM9A 1WXRA 1QA1A 2VFNA 2J8IA 2VFOA 1KQ5A 2W7ZA 3PETA 4OJOA 2BM4A 1TYVA 3BH6B 1QQ1A 3AK5A 3RIQA 4KH3A 5JLVC 1QRBA 4OJPA 1TYXA 3SYJA 2VFQA 4JRAC 3N6ZA 4OJ5A 2V5IA 2IOUG 3TH0A 2VFMA 1DABA 3SZEA 1K8FA 1QA2A 4OJLA 2BM6A 4OJ6A 2BM7A 1TYWA 1K4ZA 1HF2A 2XC1A 3LJYA 1TYUA 2BX6A 1QA3A 4V02C 2G0YA 1CLWA 2YUHA 1QRCA 2BM5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3H09 A;  3ML3 A;  2VFP A;  1TSP A;  4OM9 A;  1WXR A;  1QA1 A;  2VFN A;  2VFO A;  1TYV A;  1QQ1 A;  3AK5 A;  3RIQ A;  4KH3 A;  1QRB A;  1TYX A;  3SYJ A;  2VFQ A;  2V5I A;  2IOU G;  3TH0 A;  2VFM A;  1DAB A;  3SZE A;  1QA2 A;  1TYW A;  2XC1 A;  1TYU A;  1QA3 A;  1CLW A;  1QRC A; 
#chains in the Genus database with same CATH topology
 3LMW A;  4Z06 A;  1EA0 A;  4NK6 A;  3ML3 A;  1H80 A;  4YDT A;  3EQO A;  5DNS A;  4OPW A;  1KCC A;  3N90 A;  1LLW A;  4XKV A;  1QA1 A;  4W8T A;  4Z03 A;  2PEC A;  3PET A;  4Z05 A;  3VSU A;  3B90 A;  4YZ0 A;  2X85 A;  3GRH A;  4W8S A;  2INV A;  1RWR A;  5JLV C;  2VJJ A;  1OGO X;  2O04 A;  3GQA A;  3UW0 A;  2NTQ A;  2Z8G A;  4PMH A;  2VFM A;  1JRG A;  1PE9 A;  1O8F A;  3SZE A;  1DAB A;  1QA2 A;  1CZF A;  2QY1 A;  2X6W A;  3B8Y A;  4YEJ A;  2QZA A;  2XT4 A;  1XG2 A;  1BN8 A;  1O8G A;  3LJY A;  3ZPP A;  2O6W A;  3NAW A;  4XL9 A;  2B0R A;  3H09 A;  3BH7 B;  2QXZ A;  4XLC A;  4XQF A;  5C1C A;  1DBG A;  2VFP A;  2PYG A;  2NST A;  4XKW A;  2NTP A;  2UVE A;  2BSP A;  4XN3 A;  2VBK A;  2QYU A;  2W7Z A;  1LLZ A;  2BM4 A;  2EWE A;  1IB4 A;  3BH6 B;  1O88 A;  2O1D A;  3EQN A;  1QRB A;  1DBO A;  1IDK A;  4U4B A;  1TYX A;  2ODL A;  3GQ7 A;  2VFQ A;  4XNF A;  5C1E A;  3T9G A;  3SYJ A;  4OZY A;  1O8M A;  4XOP A;  3VSV A;  2X6X A;  1K8F A;  2NSP A;  4OJL A;  4W8Q A;  2BM6 A;  4XN0 A;  1PXZ A;  4OJ6 A;  4YZQ A;  1L1I A;  1PLU A;  2IQ7 A;  1TYU A;  4XM3 A;  1QA3 A;  4V02 C;  2G0Y A;  1GQ8 A;  1CLW A;  2YUH A;  2VBE A;  4XLA A;  1QRC A;  2BM5 A;  3DU1 X;  2F3L A;  3JX8 A;  1O8J A;  1KCD A;  2VBM A;  2X3H A;  1O8E A;  1O8I A;  4C2L A;  5JMC B;  3LYC A;  1IA5 A;  4HWV A;  4OM9 A;  4XLF A;  4YEI A;  4EW9 A;  2VFN A;  2XTX A;  3SUC A;  2J8I A;  2VFO A;  3ZSC A;  1KQ5 A;  4OJO A;  3WWG A;  4XMY A;  4XOR A;  2NT6 A;  1EE6 A;  1K5C A;  4I84 A;  1EZG A;  3RIQ A;  4KH3 A;  1O8L A;  2O0W A;  3SQV A;  4OJP A;  4YZX A;  4JRA C;  3N6Z A;  3TH0 A;  4U49 A;  3B4N A;  1OFL A;  2XT2 A;  3KRG A;  1O8K A;  4YFO A;  1HG8 A;  1RMG A;  2BM7 A;  2NT9 A;  3NB2 A;  1HF2 A;  4YEL A;  3FY3 A;  4XOT A;  1NHC A;  2XTW A;  4XR6 A;  5AMV A;  1WMR A;  4W8R A;  2XTY A;  3GQ8 A;  3P4G A;  3VST A;  2VJI A;  1AIR A;  1OFM A;  2J8K A;  4NK8 A;  2X6Y A;  1QCX A;  1TSP A;  3PSZ A;  4URR A;  2O17 A;  4YC5 A;  1WXR A;  3VMV A;  4OZZ A;  3GQ9 A;  1LM1 A;  1QJV A;  1RU4 A;  1TYV A;  1OFD A;  2INU A;  1QQ1 A;  2NZM A;  2O0V A;  2QX3 A;  4XLE A;  4YCQ A;  1OOC A;  1OFE A;  3JUR A;  3AK5 A;  2NTB A;  4OJ5 A;  2V5I A;  1OGM X;  2IOU G;  2PYH A;  4MR0 A;  4MXN A;  4AVZ A;  3SY2 A;  3PSS A;  1BHE A;  4XLH A;  4XON A;  1IDJ A;  1TYW A;  1K4Z A;  2XC1 A;  1JTA A;  1X0C A;  4YZA A;  3VMW A;  1O8D A;  2UVF A;  2BX6 A;  1VBL A;  1O8H A;  1KTW A; 
#chains in the Genus database with same CATH homology
 2B0R A;  2F3L A;  3H09 A;  3BH7 B;  3JX8 A;  3P4G A;  3ML3 A;  2VFP A;  5JMC B;  1TSP A;  3LYC A;  4OPW A;  3N90 A;  4OM9 A;  1WXR A;  1QA1 A;  2VFN A;  2J8I A;  2VFO A;  1KQ5 A;  2W7Z A;  3PET A;  4OJO A;  2BM4 A;  1TYV A;  3BH6 B;  1QQ1 A;  3AK5 A;  3RIQ A;  4KH3 A;  5JLV C;  1QRB A;  4OJP A;  1TYX A;  3SYJ A;  2VFQ A;  4JRA C;  3N6Z A;  4OJ5 A;  2V5I A;  2IOU G;  3TH0 A;  2VFM A;  1DAB A;  3SZE A;  1K8F A;  1QA2 A;  4OJL A;  2BM6 A;  4OJ6 A;  2BM7 A;  1TYW A;  1K4Z A;  1HF2 A;  2XC1 A;  3LJY A;  1TYU A;  2BX6 A;  1QA3 A;  4V02 C;  2G0Y A;  1CLW A;  2YUH A;  1QRC A;  2BM5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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