2IOUG

Major tropism determinant p1 (mtd-p1) variant complexed with bordetella brochiseptica virulence factor pertactin extracellular domain (prn-e).
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
535
structure length
508
Chain Sequence
DWNNQSIIKAGERQHGIHIKQSDGAGVRTATGTTIKVSGRQAQGVLLENPAAELRFQNGSVTSSGQLFDEGVRRFLGTVTVKAGKLVADHATLANVSDTRDDDGIALYVAGEQAQASIADSTLQGAGGVRVERGANVTVQRSTIVDGGLHIGTLQPLQPEDLPPSRVVLGDTSVTAVPASGAPAAVSVFGANELTVDGGHITGGRAAGVAAMDGAIVHLQRATIRRGGWYGVDVSDSTVDLAQSIVEAPQLGAAIRAGRGARVTVSGGSLSAPHGNVIETGGGARRFPPPASPLSITLQAGARAQGRALLYRVLPEPVKLTLAGGAQGQGDIVATELPPIPGASSGPLDVALASQARWTGATRAVDSLSIDNATWVMTDNSNVGALRLASDGSVDFQQPAEAGRFKVLMVDTLAGSGLFRMNVFADLGLSDKLVVMRDASGQHRLWVRNSGSEPASANTMLLVQTPRGSAATFTLANKDGKVDIGTYRYRLAANGNGQWSLVGAKAPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein/membrane protein
molecule keywords Major Tropism Determinant P1
publication title Selective Ligand Recognition by a Diversity-Generating Retroelement Variable Protein
pubmed doi rcsb
source organism Bordetella phage bpp-1
total genus 161
structure length 508
sequence length 535
chains with identical sequence H
ec nomenclature
pdb deposition date 2006-10-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF03212 Pertactin Pertactin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2iouG00
1QA1A 3AK5A 2VFPA 1QRCA 1WXRA 2V5IA 1TYUA 1QRBA 4KH3A 2IOUG 1TSPA 1QA3A 4OM9A 3TH0A 2VFQA 2XC1A 1CLWA 1TYXA 1QQ1A 3ML3A 2VFMA 3H09A 3SYJA 3SZEA 1TYVA 3RIQA 1TYWA 2VFOA 1QA2A 2VFNA 1DABA
chains in the Genus database with same CATH superfamily
3NB2A 4YEIA 3AK5A 1KQ5A 1WXRA 2V5IA 2XT2A 1K8FA 1O88A 4YC5A 2G0YA 1O8GA 2BM4A 4OZYA 4OJOA 4V02C 1LLZA 2BM5A 3GQ9A 4W8TA 1OFLA 5AMVA 3VSTA 4EW9A 2XTWA 1KCCA 3ZPPA 4OJLA 1OFDA 1KCDA 3SUCA 4XQFA 2BX6A 3B90A 1CZFA 2O04A 3LJYA 1H80A 1LM1A 3PETA 4XONA 1IB4A 3BH6B 1O8IA 1O8KA 1XG2A 4Z06A 1OOCA 2XT4A 2NTQA 2PECA 1TYVA 3N6ZA 4XOPA 4JRAC 1LLWA 1TYWA 5DNSA 2J8KA 4W8QA 1JRGA 1BHEA 1QA1A 1EE6A 4XNFA 3UW0A 2INUA 2IQ7A 1QRCA 2VJIA 3GRHA 2VJJA 1PE9A 2B0RA 2QZAA 1QRBA 3JURA 4PMHA 1IDJA 2IOUG 4URRA 4XOTA 4YZAA 1JTAA 1TSPA 1QA3A 4OM9A 2PYHA 1GQ8A 1K4ZA 3B4NA 4OZZA 4XL9A 4YFOA 4I84A 2X6XA 1BN8A 4XLEA 1KTWA 2NT6A 4W8SA 2NTPA 2Z8GA 1DBGA 3NAWA 4XM3A 2UVEA 3GQ8A 2EWEA 3EQOA 2F3LA 4XKVA 1K5CA 4XLFA 2J8IA 2VFMA 4YZ0A 4XN0A 3WWGA 3EQNA 5C1CA 2QY1A 3JX8A 3SZEA 1RWRA 3P4GA 1O8MA 3BH7B 4NK8A 2VFOA 2VFNA 1HG8A 4XLHA 4XORA 2O1DA 2NSPA 1EA0A 2X3HA 4Z05A 1OFEA 2X6WA 1VBLA 4MXNA 1TYUA 4KH3A 4XLAA 2O0VA 4W8RA 2VBMA 5JMCB 1IA5A 1O8JA 4YEJA 3TH0A 4OPWA 2VFQA 1DBOA 2BSPA 4YDTA 4Z03A 1AIRA 2XC1A 4XKWA 1HF2A 4YELA 1PLUA 3VSUA 1O8HA 2UVFA 4U49A 3N90A 1TYXA 1QQ1A 4XR6A 3VMWA 2NSTA 2O0WA 3ML3A 3H09A 2YUHA 3LMWA 5C1EA 3DU1X 4MR0A 2W7ZA 4XLCA 3SYJA 2VBKA 4XN3A 3GQAA 2ODLA 2NT9A 3FY3A 1NHCA 4OJPA 1QA2A 1IDKA 1EZGA 2QXZA 2PYGA 3SY2A 1RU4A 3B8YA 1L1IA 2O6WA 2NTBA 4OJ6A 3SQVA 2VFPA 2INVA 2NZMA 3VSVA 2QX3A 1O8DA 1WMRA 2XTYA 3PSSA 1O8LA 3VMVA 3LYCA 4XMYA 4AVZA 1X0CA 4NK6A 2QYUA 1PXZA 2BM7A 2VBEA 3PSZA 1OGMX 2XTXA 3ZSCA 1OFMA 4YCQA 1CLWA 4U4BA 2O17A 1RMGA 2X6YA 3GQ7A 2BM6A 4HWVA 4OJ5A 1O8EA 1O8FA 4YZXA 1OGOX 3RIQA 2X85A 4C2LA 5JLVC 1QCXA 3KRGA 4YZQA 1DABA 1QJVA 3T9GA
chains in the Genus database with same CATH topology
1QA1A 4OJ6A 3AK5A 1KQ5A 2VFPA 1QRCA 1WXRA 2V5IA 1TYUA 1K8FA 2B0RA 1QRBA 4KH3A 2G0YA 2IOUG 1TSPA 5JMCB 2BM4A 1QA3A 3LYCA 4OJOA 4OM9A 4V02C 1K4ZA 2BM5A 2VFQA 4OPWA 3TH0A 2BM7A 2XC1A 1HF2A 4OJLA 2BX6A 1CLWA 3N90A 3LJYA 1TYXA 1QQ1A 2F3LA 3PETA 2BM6A 4OJ5A 2J8IA 2VFMA 2YUHA 3BH6B 3H09A 3ML3A 3SYJA 2W7ZA 3SZEA 3JX8A 1TYVA 3N6ZA 3RIQA 3P4GA 3BH7B 4JRAC 5JLVC 1TYWA 4OJPA 2VFOA 1QA2A 2VFNA 1DABA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QA1 A;  3AK5 A;  2VFP A;  1QRC A;  1WXR A;  2V5I A;  1TYU A;  1QRB A;  4KH3 A;  2IOU G;  1TSP A;  1QA3 A;  4OM9 A;  3TH0 A;  2VFQ A;  2XC1 A;  1CLW A;  1TYX A;  1QQ1 A;  3ML3 A;  2VFM A;  3H09 A;  3SYJ A;  3SZE A;  1TYV A;  3RIQ A;  1TYW A;  2VFO A;  1QA2 A;  2VFN A;  1DAB A; 
#chains in the Genus database with same CATH topology
 3NB2 A;  4YEI A;  3AK5 A;  1KQ5 A;  1WXR A;  2V5I A;  2XT2 A;  1K8F A;  1O88 A;  4YC5 A;  2G0Y A;  1O8G A;  2BM4 A;  4OZY A;  4OJO A;  4V02 C;  1LLZ A;  2BM5 A;  3GQ9 A;  4W8T A;  1OFL A;  5AMV A;  3VST A;  4EW9 A;  2XTW A;  1KCC A;  3ZPP A;  4OJL A;  1OFD A;  1KCD A;  3SUC A;  4XQF A;  2BX6 A;  3B90 A;  1CZF A;  2O04 A;  3LJY A;  1H80 A;  1LM1 A;  3PET A;  4XON A;  1IB4 A;  3BH6 B;  1O8I A;  1O8K A;  1XG2 A;  4Z06 A;  1OOC A;  2XT4 A;  2NTQ A;  2PEC A;  1TYV A;  3N6Z A;  4XOP A;  4JRA C;  1LLW A;  1TYW A;  5DNS A;  2J8K A;  4W8Q A;  1JRG A;  1BHE A;  1QA1 A;  1EE6 A;  4XNF A;  3UW0 A;  2INU A;  2IQ7 A;  1QRC A;  2VJI A;  3GRH A;  2VJJ A;  1PE9 A;  2B0R A;  2QZA A;  1QRB A;  3JUR A;  4PMH A;  1IDJ A;  2IOU G;  4URR A;  4XOT A;  4YZA A;  1JTA A;  1TSP A;  1QA3 A;  4OM9 A;  2PYH A;  1GQ8 A;  1K4Z A;  3B4N A;  4OZZ A;  4XL9 A;  4YFO A;  4I84 A;  2X6X A;  1BN8 A;  4XLE A;  1KTW A;  2NT6 A;  4W8S A;  2NTP A;  2Z8G A;  1DBG A;  3NAW A;  4XM3 A;  2UVE A;  3GQ8 A;  2EWE A;  3EQO A;  2F3L A;  4XKV A;  1K5C A;  4XLF A;  2J8I A;  2VFM A;  4YZ0 A;  4XN0 A;  3WWG A;  3EQN A;  5C1C A;  2QY1 A;  3JX8 A;  3SZE A;  1RWR A;  3P4G A;  1O8M A;  3BH7 B;  4NK8 A;  2VFO A;  2VFN A;  1HG8 A;  4XLH A;  4XOR A;  2O1D A;  2NSP A;  1EA0 A;  2X3H A;  4Z05 A;  1OFE A;  2X6W A;  1VBL A;  4MXN A;  1TYU A;  4KH3 A;  4XLA A;  2O0V A;  4W8R A;  2VBM A;  5JMC B;  1IA5 A;  1O8J A;  4YEJ A;  3TH0 A;  4OPW A;  2VFQ A;  1DBO A;  2BSP A;  4YDT A;  4Z03 A;  1AIR A;  2XC1 A;  4XKW A;  1HF2 A;  4YEL A;  1PLU A;  3VSU A;  1O8H A;  2UVF A;  4U49 A;  3N90 A;  1TYX A;  1QQ1 A;  4XR6 A;  3VMW A;  2NST A;  2O0W A;  3ML3 A;  3H09 A;  2YUH A;  3LMW A;  5C1E A;  3DU1 X;  4MR0 A;  2W7Z A;  4XLC A;  3SYJ A;  2VBK A;  4XN3 A;  3GQA A;  2ODL A;  2NT9 A;  3FY3 A;  1NHC A;  4OJP A;  1QA2 A;  1IDK A;  1EZG A;  2QXZ A;  2PYG A;  3SY2 A;  1RU4 A;  3B8Y A;  1L1I A;  2O6W A;  2NTB A;  4OJ6 A;  3SQV A;  2VFP A;  2INV A;  2NZM A;  3VSV A;  2QX3 A;  1O8D A;  1WMR A;  2XTY A;  3PSS A;  1O8L A;  3VMV A;  3LYC A;  4XMY A;  4AVZ A;  1X0C A;  4NK6 A;  2QYU A;  1PXZ A;  2BM7 A;  2VBE A;  3PSZ A;  1OGM X;  2XTX A;  3ZSC A;  1OFM A;  4YCQ A;  1CLW A;  4U4B A;  2O17 A;  1RMG A;  2X6Y A;  3GQ7 A;  2BM6 A;  4HWV A;  4OJ5 A;  1O8E A;  1O8F A;  4YZX A;  1OGO X;  3RIQ A;  2X85 A;  4C2L A;  5JLV C;  1QCX A;  3KRG A;  4YZQ A;  1DAB A;  1QJV A;  3T9G A; 
#chains in the Genus database with same CATH homology
 1QA1 A;  4OJ6 A;  3AK5 A;  1KQ5 A;  2VFP A;  1QRC A;  1WXR A;  2V5I A;  1TYU A;  1K8F A;  2B0R A;  1QRB A;  4KH3 A;  2G0Y A;  2IOU G;  1TSP A;  5JMC B;  2BM4 A;  1QA3 A;  3LYC A;  4OJO A;  4OM9 A;  4V02 C;  1K4Z A;  2BM5 A;  2VFQ A;  4OPW A;  3TH0 A;  2BM7 A;  2XC1 A;  1HF2 A;  4OJL A;  2BX6 A;  1CLW A;  3N90 A;  3LJY A;  1TYX A;  1QQ1 A;  2F3L A;  3PET A;  2BM6 A;  4OJ5 A;  2J8I A;  2VFM A;  2YUH A;  3BH6 B;  3H09 A;  3ML3 A;  3SYJ A;  2W7Z A;  3SZE A;  3JX8 A;  1TYV A;  3N6Z A;  3RIQ A;  3P4G A;  3BH7 B;  4JRA C;  5JLV C;  1TYW A;  4OJP A;  2VFO A;  1QA2 A;  2VFN A;  1DAB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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