1DABA

The structure of bordetella pertussis virulence factor p.69 pertactin
Total Genus 182
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
182
sequence length
539
structure length
539
Chain Sequence
DWNNQSIVKTGERQHGIHIQGSDPGGVRTASGTTIKVSGRQAQGILLENPAAELQFRNGSVTSSGQLSDDGIRRFLGTVTVKAGKLVADHATLANVGDTWDDDGIALYVAGEQAQASIADSTLQGAGGVQIERGANVTVQRSAIVDGGLHIGALQSLQPEDLPPSRVVLRDTNVTAVPASGAPAAVSVLGASELTLDGGHITGGRAAGVAAMQGAVVHLQRATIRRGDALAGGAVPGGAVPGGAVPGGFGPGGFGPVLDGWYGVDVSGSSVELAQSIVEAPELGAAIRVGRGARVTVPGGSLSAPHGNVIETGGARRFAPQAAPLSITLQAGAHAQGKALLYRVLPEPVKLTLTGGADAQGDIVATELPSIPGTSIGPLDVALASQARWTGATRAVDSLSIDNATWVMTDNSNVGALRLASDGSVDFQQPAEAGRFKVLTVNTLAGSGLFRMNVFADLGLSDKLVVMQDASGQHRLWVRNSGSEPASANTLLLVQTPLGSAATFTLANKDGKVDIGTYRYRLAANGNGQWSLVGAKAPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords P.69 PERTACTIN
publication title Structure of Bordetella pertussis virulence factor P.69 pertactin.
pubmed doi rcsb
source organism Bordetella pertussis
molecule tags Cell adhesion
total genus 182
structure length 539
sequence length 539
ec nomenclature
pdb deposition date 1999-10-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03212 Pertactin Pertactin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1dabA00
3SYJA 2V5IA 2XC1A 2VFPA 2VFMA 1TYWA 3TH0A 3SZEA 1QA3A 1QA2A 4KH3A 2VFQA 1TYVA 2VFNA 1QRCA 1CLWA 1DABA 1TYUA 1QQ1A 2IOUG 1TYXA 1WXRA 3H09A 2VFOA 4OM9A 3ML3A 3RIQA 3AK5A 1QRBA 1QA1A 1TSPA
chains in the Genus database with same CATH superfamily
1O8MA 4YDTA 2V5IA 2XC1A 4XNFA 2VFMA 1PE9A 3LYCA 1O8EA 2NSTA 2X6XA 2J8KA 4YCQA 4PMHA 2UVFA 1JTAA 3SZEA 2PECA 2QZAA 4KH3A 2Z8GA 2XT2A 2XTXA 2IQ7A 5C1EA 5JMCB 1TYVA 2G0YA 1KTWA 1TYUA 1AIRA 4W8RA 1HF2A 3BH6B 4U4BA 2IOUG 1TYXA 1O8LA 3GQAA 1QJVA 4YC5A 2QXZA 4W8SA 1IB4A 1LM1A 2UVEA 4NK8A 2NSPA 2ODLA 4OJPA 3ZSCA 4MXNA 1K8FA 4OZZA 1OFLA 1IDJA 4YFOA 2EWEA 2YUHA 1OOCA 3PETA 1RU4A 4XR6A 3B4NA 1TSPA 1XG2A 1OFEA 3SYJA 3VMWA 2QY1A 3NAWA 3EQNA 2X85A 3JURA 4XMYA 1GQ8A 3B90A 1QA3A 2NZMA 1LLZA 3N90A 4XOTA 1QA2A 2O6WA 3PSZA 1RMGA 3GQ8A 3EQOA 1QCXA 1DBGA 4XLEA 2VFNA 5DNSA 1QRCA 1K5CA 4XL9A 2B0RA 4YZ0A 1KCDA 4Z05A 4XLCA 4EW9A 1CZFA 1WXRA 4XM3A 3WWGA 4OZYA 1RWRA 1NHCA 2O0WA 2BM7A 2F3LA 3H09A 3UW0A 1EE6A 4XLFA 2VFOA 4OM9A 4OPWA 3RIQA 5AMVA 3AK5A 2NTBA 1VBLA 4XKVA 4AVZA 1QA1A 4W8QA 1KCCA 1L1IA 2O04A 3SQVA 2X6YA 1O8DA 1OFDA 5C1CA 2BM6A 1TYWA 3TH0A 4OJ6A 2VBKA 2QX3A 3JX8A 4C2LA 3ZPPA 4YZAA 1O8FA 1HG8A 2BM4A 2O0VA 1LLWA 1CLWA 3GRHA 2PYGA 2PYHA 2INUA 4OJLA 1O8IA 3VMVA 4YZQA 3VSUA 1O8GA 4V02C 1BN8A 1QQ1A 4XONA 2VBMA 1O88A 4Z03A 1K4ZA 5JLVC 1OGOX 2VBEA 4U49A 3DU1X 4W8TA 3KRGA 2W7ZA 1DBOA 3GQ9A 3ML3A 2XT4A 1WMRA 3BH7B 4OJ5A 1QRBA 1BHEA 2XTYA 4MR0A 1O8HA 1KQ5A 1JRGA 3NB2A 2X6WA 3P4GA 4XKWA 1X0CA 2INVA 2BM5A 4XLHA 2VFPA 4I84A 3LMWA 4YEIA 4OJOA 2O17A 4YZXA 1PXZA 3FY3A 2O1DA 4XLAA 2VFQA 2NT9A 4Z06A 1IA5A 4NK6A 3LJYA 3VSVA 1OFMA 1DABA 2J8IA 2NT6A 3N6ZA 4HWVA 4XQFA 1OGMX 2QYUA 1EZGA 3GQ7A 1IDKA 3SY2A 4JRAC 1EA0A 4XN3A 1H80A 2X3HA 4XOPA 3T9GA 3VSTA 3B8YA 4YELA 2XTWA 1O8JA 3PSSA 2BSPA 3SUCA 1PLUA 1O8KA 2NTPA 4XORA 2VJIA 4YEJA 2NTQA 2VJJA 4XN0A 4URRA 2BX6A
chains in the Genus database with same CATH topology
3SYJA 2BM5A 2V5IA 2XC1A 2VFPA 2VFMA 2BM6A 3LYCA 1TYWA 3TH0A 4OJOA 4OJ6A 3SZEA 3N90A 1QA3A 1QA2A 4KH3A 2VFQA 3JX8A 5JMCB 2BM4A 1TYVA 2G0YA 2VFNA 1CLWA 1QRCA 3LJYA 1DABA 2J8IA 4OJLA 1TYUA 2B0RA 3N6ZA 1HF2A 3BH6B 4V02C 1QQ1A 2IOUG 1TYXA 1WXRA 4JRAC 1K4ZA 5JLVC 2BM7A 2F3LA 3H09A 4OJPA 2W7ZA 2VFOA 4OM9A 4OPWA 1K8FA 3ML3A 3RIQA 3AK5A 3BH7B 4OJ5A 1QRBA 2YUHA 3PETA 1QA1A 1TSPA 1KQ5A 3P4GA 2BX6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SYJ A;  2V5I A;  2XC1 A;  2VFP A;  2VFM A;  1TYW A;  3TH0 A;  3SZE A;  1QA3 A;  1QA2 A;  4KH3 A;  2VFQ A;  1TYV A;  2VFN A;  1QRC A;  1CLW A;  1DAB A;  1TYU A;  1QQ1 A;  2IOU G;  1TYX A;  1WXR A;  3H09 A;  2VFO A;  4OM9 A;  3ML3 A;  3RIQ A;  3AK5 A;  1QRB A;  1QA1 A;  1TSP A; 
#chains in the Genus database with same CATH topology
 1O8M A;  4YDT A;  2V5I A;  2XC1 A;  4XNF A;  2VFM A;  1PE9 A;  3LYC A;  1O8E A;  2NST A;  2X6X A;  2J8K A;  4YCQ A;  4PMH A;  2UVF A;  1JTA A;  3SZE A;  2PEC A;  2QZA A;  4KH3 A;  2Z8G A;  2XT2 A;  2XTX A;  2IQ7 A;  5C1E A;  5JMC B;  1TYV A;  2G0Y A;  1KTW A;  1TYU A;  1AIR A;  4W8R A;  1HF2 A;  3BH6 B;  4U4B A;  2IOU G;  1TYX A;  1O8L A;  3GQA A;  1QJV A;  4YC5 A;  2QXZ A;  4W8S A;  1IB4 A;  1LM1 A;  2UVE A;  4NK8 A;  2NSP A;  2ODL A;  4OJP A;  3ZSC A;  4MXN A;  1K8F A;  4OZZ A;  1OFL A;  1IDJ A;  4YFO A;  2EWE A;  2YUH A;  1OOC A;  3PET A;  1RU4 A;  4XR6 A;  3B4N A;  1TSP A;  1XG2 A;  1OFE A;  3SYJ A;  3VMW A;  2QY1 A;  3NAW A;  3EQN A;  2X85 A;  3JUR A;  4XMY A;  1GQ8 A;  3B90 A;  1QA3 A;  2NZM A;  1LLZ A;  3N90 A;  4XOT A;  1QA2 A;  2O6W A;  3PSZ A;  1RMG A;  3GQ8 A;  3EQO A;  1QCX A;  1DBG A;  4XLE A;  2VFN A;  5DNS A;  1QRC A;  1K5C A;  4XL9 A;  2B0R A;  4YZ0 A;  1KCD A;  4Z05 A;  4XLC A;  4EW9 A;  1CZF A;  1WXR A;  4XM3 A;  3WWG A;  4OZY A;  1RWR A;  1NHC A;  2O0W A;  2BM7 A;  2F3L A;  3H09 A;  3UW0 A;  1EE6 A;  4XLF A;  2VFO A;  4OM9 A;  4OPW A;  3RIQ A;  5AMV A;  3AK5 A;  2NTB A;  1VBL A;  4XKV A;  4AVZ A;  1QA1 A;  4W8Q A;  1KCC A;  1L1I A;  2O04 A;  3SQV A;  2X6Y A;  1O8D A;  1OFD A;  5C1C A;  2BM6 A;  1TYW A;  3TH0 A;  4OJ6 A;  2VBK A;  2QX3 A;  3JX8 A;  4C2L A;  3ZPP A;  4YZA A;  1O8F A;  1HG8 A;  2BM4 A;  2O0V A;  1LLW A;  1CLW A;  3GRH A;  2PYG A;  2PYH A;  2INU A;  4OJL A;  1O8I A;  3VMV A;  4YZQ A;  3VSU A;  1O8G A;  4V02 C;  1BN8 A;  1QQ1 A;  4XON A;  2VBM A;  1O88 A;  4Z03 A;  1K4Z A;  5JLV C;  1OGO X;  2VBE A;  4U49 A;  3DU1 X;  4W8T A;  3KRG A;  2W7Z A;  1DBO A;  3GQ9 A;  3ML3 A;  2XT4 A;  1WMR A;  3BH7 B;  4OJ5 A;  1QRB A;  1BHE A;  2XTY A;  4MR0 A;  1O8H A;  1KQ5 A;  1JRG A;  3NB2 A;  2X6W A;  3P4G A;  4XKW A;  1X0C A;  2INV A;  2BM5 A;  4XLH A;  2VFP A;  4I84 A;  3LMW A;  4YEI A;  4OJO A;  2O17 A;  4YZX A;  1PXZ A;  3FY3 A;  2O1D A;  4XLA A;  2VFQ A;  2NT9 A;  4Z06 A;  1IA5 A;  4NK6 A;  3LJY A;  3VSV A;  1OFM A;  1DAB A;  2J8I A;  2NT6 A;  3N6Z A;  4HWV A;  4XQF A;  1OGM X;  2QYU A;  1EZG A;  3GQ7 A;  1IDK A;  3SY2 A;  4JRA C;  1EA0 A;  4XN3 A;  1H80 A;  2X3H A;  4XOP A;  3T9G A;  3VST A;  3B8Y A;  4YEL A;  2XTW A;  1O8J A;  3PSS A;  2BSP A;  3SUC A;  1PLU A;  1O8K A;  2NTP A;  4XOR A;  2VJI A;  4YEJ A;  2NTQ A;  2VJJ A;  4XN0 A;  4URR A;  2BX6 A; 
#chains in the Genus database with same CATH homology
 3SYJ A;  2BM5 A;  2V5I A;  2XC1 A;  2VFP A;  2VFM A;  2BM6 A;  3LYC A;  1TYW A;  3TH0 A;  4OJO A;  4OJ6 A;  3SZE A;  3N90 A;  1QA3 A;  1QA2 A;  4KH3 A;  2VFQ A;  3JX8 A;  5JMC B;  2BM4 A;  1TYV A;  2G0Y A;  2VFN A;  1CLW A;  1QRC A;  3LJY A;  1DAB A;  2J8I A;  4OJL A;  1TYU A;  2B0R A;  3N6Z A;  1HF2 A;  3BH6 B;  4V02 C;  1QQ1 A;  2IOU G;  1TYX A;  1WXR A;  4JRA C;  1K4Z A;  5JLV C;  2BM7 A;  2F3L A;  3H09 A;  4OJP A;  2W7Z A;  2VFO A;  4OM9 A;  4OPW A;  1K8F A;  3ML3 A;  3RIQ A;  3AK5 A;  3BH7 B;  4OJ5 A;  1QRB A;  2YUH A;  3PET A;  1QA1 A;  1TSP A;  1KQ5 A;  3P4G A;  2BX6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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