1DABA

The structure of bordetella pertussis virulence factor p.69 pertactin
Total Genus 182
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
182
sequence length
539
structure length
539
Chain Sequence
DWNNQSIVKTGERQHGIHIQGSDPGGVRTASGTTIKVSGRQAQGILLENPAAELQFRNGSVTSSGQLSDDGIRRFLGTVTVKAGKLVADHATLANVGDTWDDDGIALYVAGEQAQASIADSTLQGAGGVQIERGANVTVQRSAIVDGGLHIGALQSLQPEDLPPSRVVLRDTNVTAVPASGAPAAVSVLGASELTLDGGHITGGRAAGVAAMQGAVVHLQRATIRRGDALAGGAVPGGAVPGGAVPGGFGPGGFGPVLDGWYGVDVSGSSVELAQSIVEAPELGAAIRVGRGARVTVPGGSLSAPHGNVIETGGARRFAPQAAPLSITLQAGAHAQGKALLYRVLPEPVKLTLTGGADAQGDIVATELPSIPGTSIGPLDVALASQARWTGATRAVDSLSIDNATWVMTDNSNVGALRLASDGSVDFQQPAEAGRFKVLTVNTLAGSGLFRMNVFADLGLSDKLVVMQDASGQHRLWVRNSGSEPASANTLLLVQTPLGSAATFTLANKDGKVDIGTYRYRLAANGNGQWSLVGAKAPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure of Bordetella pertussis virulence factor P.69 pertactin.
pubmed doi rcsb
source organism Bordetella pertussis
molecule tags Cell adhesion
molecule keywords P.69 PERTACTIN
total genus 182
structure length 539
sequence length 539
ec nomenclature
pdb deposition date 1999-10-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03212 Pertactin Pertactin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1dabA00
1TYWA 3H09A 1QRBA 2VFQA 1WXRA 3ML3A 2VFNA 2VFMA 1DABA 1QQ1A 2VFOA 1TSPA 3AK5A 4OM9A 1TYUA 2XC1A 3SZEA 2V5IA 1QRCA 1TYVA 1CLWA 1TYXA 4KH3A 1QA1A 2IOUG 2VFPA 1QA2A 3TH0A 3SYJA 3RIQA 1QA3A
chains in the Genus database with same CATH superfamily
3LJYA 2NSPA 3SY2A 3ZSCA 1PLUA 2YUHA 4V02C 2F3LA 2XT2A 3LYCA 2XT4A 4YZXA 3SYJA 3DU1X 4I84A 5C1CA 3WWGA 3ML3A 1K5CA 5AMVA 2VFNA 4XN3A 1LM1A 4OZZA 1QCXA 4YCQA 1DABA 4JRAC 4XONA 4MR0A 3GQ8A 2VBKA 3AK5A 3N90A 2NTPA 1OFMA 2UVFA 1TYUA 1H80A 1BHEA 3N6ZA 4XL9A 2BX6A 3EQNA 4YELA 1K8FA 1EZGA 4OJ5A 3EQOA 3VSTA 4XN0A 3JX8A 2PYGA 4PMHA 4YEIA 2PYHA 1GQ8A 3GRHA 3T9GA 1O8KA 2XTWA 3NAWA 2B0RA 4U4BA 1O8JA 2BSPA 1O8EA 3H09A 1KQ5A 4XR6A 4XORA 1QRBA 2VFQA 4W8QA 1JTAA 2PECA 4HWVA 2O6WA 4Z03A 1WXRA 1O8HA 2O17A 4XLCA 3FY3A 2ODLA 1QQ1A 2X85A 4W8SA 2X6WA 4XMYA 2NTBA 3SUCA 1DBOA 2O04A 4NK8A 4OM9A 2XTXA 1LLZA 2VJIA 1AIRA 1WMRA 3JURA 4MXNA 4OJ6A 2NT9A 3SZEA 4XKVA 2BM4A 5C1EA 1RWRA 1TYXA 2NTQA 1KCDA 1OFDA 2UVEA 4Z06A 3P4GA 4U49A 4YZ0A 1IDKA 1X0CA 4XLAA 1VBLA 4XLEA 1PE9A 1BN8A 1O8MA 2VBEA 3LMWA 2J8IA 2BM6A 4W8TA 1RMGA 1IDJA 4XOPA 4XOTA 4XM3A 1O8LA 2O0VA 4YFOA 1OGMX 1EA0A 2QY1A 4NK6A 2VFOA 4YEJA 1XG2A 3NB2A 2X6XA 4OJLA 1KTWA 1OOCA 2NSTA 1QJVA 5DNSA 5JLVC 4XKWA 2XTYA 4YC5A 2INVA 3GQ9A 2VBMA 2NT6A 3BH6B 1LLWA 2V5IA 2X6YA 1OFLA 1CLWA 1HF2A 3GQ7A 4KH3A 3B90A 2G0YA 4OPWA 2BM5A 4W8RA 2Z8GA 3TH0A 4C2LA 1EE6A 2J8KA 3RIQA 2O1DA 1QA3A 4XLFA 3B4NA 1IB4A 2W7ZA 2O0WA 4YDTA 3VMVA 1TYWA 4YZAA 4AVZA 5JMCB 2QXZA 3GQAA 3VMWA 4YZQA 1IA5A 1DBGA 3KRGA 1OGOX 2QZAA 4URRA 3VSVA 2IQ7A 3PETA 3UW0A 1L1IA 1O8DA 1RU4A 2VFMA 2BM7A 4OJOA 4Z05A 3ZPPA 3PSZA 1NHCA 1PXZA 1TSPA 1O8FA 4XLHA 1O88A 3BH7B 1O8IA 4OZYA 4XNFA 2XC1A 2VJJA 3PSSA 1KCCA 2EWEA 1CZFA 1O8GA 2QYUA 3SQVA 1QRCA 1JRGA 1K4ZA 1TYVA 1OFEA 4OJPA 4XQFA 1QA1A 3VSUA 4EW9A 2IOUG 2VFPA 1QA2A 1HG8A 2QX3A 2X3HA 3B8YA 2NZMA 2INUA
chains in the Genus database with same CATH topology
3LJYA 2W7ZA 2YUHA 4V02C 1TYWA 2F3LA 3LYCA 3H09A 1KQ5A 5JMCB 1QRBA 2VFQA 1WXRA 3ML3A 3PETA 2VFNA 2J8IA 2BM6A 2VFMA 1DABA 2BM7A 4OJOA 4JRAC 1QQ1A 2VFOA 1TSPA 3AK5A 3N90A 4OM9A 1TYUA 3N6ZA 3BH7B 2BX6A 4OJLA 5JLVC 4OJ6A 2XC1A 1K8FA 4OJ5A 3SZEA 2BM4A 3JX8A 3BH6B 2V5IA 3RIQA 1QRCA 1TYVA 1K4ZA 1HF2A 1CLWA 1TYXA 4KH3A 4OJPA 1QA1A 2G0YA 4OPWA 2BM5A 2IOUG 2VFPA 1QA2A 3TH0A 3SYJA 3P4GA 2B0RA 1QA3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TYW A;  3H09 A;  1QRB A;  2VFQ A;  1WXR A;  3ML3 A;  2VFN A;  2VFM A;  1DAB A;  1QQ1 A;  2VFO A;  1TSP A;  3AK5 A;  4OM9 A;  1TYU A;  2XC1 A;  3SZE A;  2V5I A;  1QRC A;  1TYV A;  1CLW A;  1TYX A;  4KH3 A;  1QA1 A;  2IOU G;  2VFP A;  1QA2 A;  3TH0 A;  3SYJ A;  3RIQ A;  1QA3 A; 
#chains in the Genus database with same CATH topology
 3LJY A;  2NSP A;  3SY2 A;  3ZSC A;  1PLU A;  2YUH A;  4V02 C;  2F3L A;  2XT2 A;  3LYC A;  2XT4 A;  4YZX A;  3SYJ A;  3DU1 X;  4I84 A;  5C1C A;  3WWG A;  3ML3 A;  1K5C A;  5AMV A;  2VFN A;  4XN3 A;  1LM1 A;  4OZZ A;  1QCX A;  4YCQ A;  1DAB A;  4JRA C;  4XON A;  4MR0 A;  3GQ8 A;  2VBK A;  3AK5 A;  3N90 A;  2NTP A;  1OFM A;  2UVF A;  1TYU A;  1H80 A;  1BHE A;  3N6Z A;  4XL9 A;  2BX6 A;  3EQN A;  4YEL A;  1K8F A;  1EZG A;  4OJ5 A;  3EQO A;  3VST A;  4XN0 A;  3JX8 A;  2PYG A;  4PMH A;  4YEI A;  2PYH A;  1GQ8 A;  3GRH A;  3T9G A;  1O8K A;  2XTW A;  3NAW A;  2B0R A;  4U4B A;  1O8J A;  2BSP A;  1O8E A;  3H09 A;  1KQ5 A;  4XR6 A;  4XOR A;  1QRB A;  2VFQ A;  4W8Q A;  1JTA A;  2PEC A;  4HWV A;  2O6W A;  4Z03 A;  1WXR A;  1O8H A;  2O17 A;  4XLC A;  3FY3 A;  2ODL A;  1QQ1 A;  2X85 A;  4W8S A;  2X6W A;  4XMY A;  2NTB A;  3SUC A;  1DBO A;  2O04 A;  4NK8 A;  4OM9 A;  2XTX A;  1LLZ A;  2VJI A;  1AIR A;  1WMR A;  3JUR A;  4MXN A;  4OJ6 A;  2NT9 A;  3SZE A;  4XKV A;  2BM4 A;  5C1E A;  1RWR A;  1TYX A;  2NTQ A;  1KCD A;  1OFD A;  2UVE A;  4Z06 A;  3P4G A;  4U49 A;  4YZ0 A;  1IDK A;  1X0C A;  4XLA A;  1VBL A;  4XLE A;  1PE9 A;  1BN8 A;  1O8M A;  2VBE A;  3LMW A;  2J8I A;  2BM6 A;  4W8T A;  1RMG A;  1IDJ A;  4XOP A;  4XOT A;  4XM3 A;  1O8L A;  2O0V A;  4YFO A;  1OGM X;  1EA0 A;  2QY1 A;  4NK6 A;  2VFO A;  4YEJ A;  1XG2 A;  3NB2 A;  2X6X A;  4OJL A;  1KTW A;  1OOC A;  2NST A;  1QJV A;  5DNS A;  5JLV C;  4XKW A;  2XTY A;  4YC5 A;  2INV A;  3GQ9 A;  2VBM A;  2NT6 A;  3BH6 B;  1LLW A;  2V5I A;  2X6Y A;  1OFL A;  1CLW A;  1HF2 A;  3GQ7 A;  4KH3 A;  3B90 A;  2G0Y A;  4OPW A;  2BM5 A;  4W8R A;  2Z8G A;  3TH0 A;  4C2L A;  1EE6 A;  2J8K A;  3RIQ A;  2O1D A;  1QA3 A;  4XLF A;  3B4N A;  1IB4 A;  2W7Z A;  2O0W A;  4YDT A;  3VMV A;  1TYW A;  4YZA A;  4AVZ A;  5JMC B;  2QXZ A;  3GQA A;  3VMW A;  4YZQ A;  1IA5 A;  1DBG A;  3KRG A;  1OGO X;  2QZA A;  4URR A;  3VSV A;  2IQ7 A;  3PET A;  3UW0 A;  1L1I A;  1O8D A;  1RU4 A;  2VFM A;  2BM7 A;  4OJO A;  4Z05 A;  3ZPP A;  3PSZ A;  1NHC A;  1PXZ A;  1TSP A;  1O8F A;  4XLH A;  1O88 A;  3BH7 B;  1O8I A;  4OZY A;  4XNF A;  2XC1 A;  2VJJ A;  3PSS A;  1KCC A;  2EWE A;  1CZF A;  1O8G A;  2QYU A;  3SQV A;  1QRC A;  1JRG A;  1K4Z A;  1TYV A;  1OFE A;  4OJP A;  4XQF A;  1QA1 A;  3VSU A;  4EW9 A;  2IOU G;  2VFP A;  1QA2 A;  1HG8 A;  2QX3 A;  2X3H A;  3B8Y A;  2NZM A;  2INU A; 
#chains in the Genus database with same CATH homology
 3LJY A;  2W7Z A;  2YUH A;  4V02 C;  1TYW A;  2F3L A;  3LYC A;  3H09 A;  1KQ5 A;  5JMC B;  1QRB A;  2VFQ A;  1WXR A;  3ML3 A;  3PET A;  2VFN A;  2J8I A;  2BM6 A;  2VFM A;  1DAB A;  2BM7 A;  4OJO A;  4JRA C;  1QQ1 A;  2VFO A;  1TSP A;  3AK5 A;  3N90 A;  4OM9 A;  1TYU A;  3N6Z A;  3BH7 B;  2BX6 A;  4OJL A;  5JLV C;  4OJ6 A;  2XC1 A;  1K8F A;  4OJ5 A;  3SZE A;  2BM4 A;  3JX8 A;  3BH6 B;  2V5I A;  3RIQ A;  1QRC A;  1TYV A;  1K4Z A;  1HF2 A;  1CLW A;  1TYX A;  4KH3 A;  4OJP A;  1QA1 A;  2G0Y A;  4OPW A;  2BM5 A;  2IOU G;  2VFP A;  1QA2 A;  3TH0 A;  3SYJ A;  3P4G A;  2B0R A;  1QA3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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