1DABA

The structure of bordetella pertussis virulence factor p.69 pertactin
Total Genus 182
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
182
sequence length
539
structure length
539
Chain Sequence
DWNNQSIVKTGERQHGIHIQGSDPGGVRTASGTTIKVSGRQAQGILLENPAAELQFRNGSVTSSGQLSDDGIRRFLGTVTVKAGKLVADHATLANVGDTWDDDGIALYVAGEQAQASIADSTLQGAGGVQIERGANVTVQRSAIVDGGLHIGALQSLQPEDLPPSRVVLRDTNVTAVPASGAPAAVSVLGASELTLDGGHITGGRAAGVAAMQGAVVHLQRATIRRGDALAGGAVPGGAVPGGAVPGGFGPGGFGPVLDGWYGVDVSGSSVELAQSIVEAPELGAAIRVGRGARVTVPGGSLSAPHGNVIETGGARRFAPQAAPLSITLQAGAHAQGKALLYRVLPEPVKLTLTGGADAQGDIVATELPSIPGTSIGPLDVALASQARWTGATRAVDSLSIDNATWVMTDNSNVGALRLASDGSVDFQQPAEAGRFKVLTVNTLAGSGLFRMNVFADLGLSDKLVVMQDASGQHRLWVRNSGSEPASANTLLLVQTPLGSAATFTLANKDGKVDIGTYRYRLAANGNGQWSLVGAKAPP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Cell adhesion
molecule keywords P.69 PERTACTIN
publication title Structure of Bordetella pertussis virulence factor P.69 pertactin.
pubmed doi rcsb
source organism Bordetella pertussis
total genus 182
structure length 539
sequence length 539
ec nomenclature
pdb deposition date 1999-10-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03212 Pertactin Pertactin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1dabA00
3ML3A 2VFPA 4KH3A 4OM9A 2VFOA 1QA2A 2VFNA 3SYJA 1TYWA 2VFMA 1QA3A 3SZEA 2XC1A 1TYUA 1TYXA 3AK5A 1DABA 1QRCA 3TH0A 2VFQA 1QA1A 1TYVA 1TSPA 1QQ1A 2IOUG 1CLWA 1QRBA 3RIQA 2V5IA 3H09A 1WXRA
chains in the Genus database with same CATH superfamily
3ML3A 2QXZA 1RWRA 3NB2A 4KH3A 3ZPPA 4XKWA 1JTAA 3BH7B 2NSTA 3SYJA 2X6XA 3GQ8A 4OJLA 2XC1A 2PECA 1LLWA 3AK5A 3GQ7A 1O8EA 2X6YA 4XL9A 1NHCA 2XT2A 4XLCA 1K5CA 4XN3A 2X3HA 3LYCA 4YEJA 3LJYA 4MXNA 3VSUA 4YFOA 3EQNA 1OGMX 4OPWA 1OFMA 1O8FA 1BN8A 3VMVA 1O88A 2BM7A 4PMHA 4XORA 2BM6A 3KRGA 2IOUG 4YCQA 1OFLA 2B0RA 1PE9A 1HF2A 2X6WA 1XG2A 2INVA 2VFOA 2VJIA 3B8YA 4YZQA 1L1IA 2VFNA 1O8LA 1OFEA 1TYWA 1O8GA 2G0YA 3EQOA 1LLZA 2QYUA 2ODLA 4XN0A 1KCCA 2O0WA 2XTYA 4NK8A 1TYUA 2O04A 3PSSA 3VMWA 2NT6A 1KTWA 1OFDA 2W7ZA 4YZAA 1PXZA 1HG8A 5AMVA 2NTQA 1H80A 1K4ZA 4Z06A 2BX6A 2VFQA 4MR0A 2UVEA 2X85A 5C1CA 1WMRA 1IA5A 5DNSA 4YZXA 1EE6A 2QX3A 1TYVA 1X0CA 1TSPA 2PYHA 4YEIA 1QQ1A 2VBMA 1CLWA 1QRBA 1RU4A 3B90A 4W8SA 4W8RA 4XLAA 4XLHA 5JLVC 5JMCB 2NTBA 1WXRA 2IQ7A 3GRHA 1O8MA 2O6WA 2J8IA 1BHEA 2O1DA 2QY1A 4XOPA 3DU1X 2VJJA 4OZZA 1DBGA 4XMYA 4YC5A 4OJ6A 5C1EA 2VFMA 2XTXA 3SY2A 1QA3A 4XOTA 4AVZA 1O8DA 3B4NA 4XNFA 3NAWA 2BSPA 4U4BA 1EZGA 1GQ8A 4XONA 4XM3A 3T9GA 3N6ZA 4OJOA 1JRGA 2QZAA 1DABA 4YZ0A 3JURA 1LM1A 1QRCA 3TH0A 1IDJA 2J8KA 1O8HA 4I84A 3SQVA 2NZMA 4JRAC 3UW0A 3VSTA 4C2LA 1OOCA 4V02C 4XLFA 4Z03A 3PSZA 2NSPA 2UVFA 3GQ9A 1O8JA 1OGOX 1IDKA 1QJVA 2BM5A 1K8FA 2F3LA 2V5IA 4URRA 1VBLA 2NTPA 3P4GA 4OJPA 1AIRA 3PETA 2VFPA 1KCDA 3WWGA 4OM9A 4OZYA 3ZSCA 2NT9A 4W8QA 4EW9A 1O8KA 2PYGA 2XTWA 1QA2A 3SUCA 3FY3A 1IB4A 3SZEA 3N90A 4XKVA 4XR6A 1DBOA 3LMWA 2BM4A 1TYXA 2O0VA 3BH6B 4Z05A 4HWVA 4YELA 4W8TA 1CZFA 1O8IA 2XT4A 1KQ5A 4XQFA 3GQAA 3VSVA 1QA1A 4U49A 2EWEA 4XLEA 2Z8GA 2YUHA 1RMGA 4YDTA 3JX8A 4NK6A 2O17A 2VBEA 3RIQA 1QCXA 1EA0A 1PLUA 4OJ5A 3H09A 2INUA 2VBKA
chains in the Genus database with same CATH topology
3ML3A 2B0RA 3PETA 1HF2A 2J8IA 2VFPA 4KH3A 4OM9A 2VFOA 1QA2A 3BH7B 2VFNA 3SYJA 1TYWA 4OJ6A 2G0YA 2VFMA 1QA3A 3SZEA 4OJLA 2XC1A 3N90A 5JMCB 1TYUA 2BM4A 1TYXA 3AK5A 3N6ZA 4OJOA 3BH6B 5JLVC 2W7ZA 1DABA 1QRCA 3LYCA 3TH0A 3LJYA 1K4ZA 2BX6A 2VFQA 1KQ5A 4JRAC 1QA1A 4OPWA 4V02C 2BM5A 2YUHA 1TYVA 2BM7A 3JX8A 1TSPA 2BM6A 1QQ1A 2IOUG 1CLWA 1QRBA 2F3LA 3RIQA 1K8FA 2V5IA 4OJ5A 3H09A 1WXRA 3P4GA 4OJPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ML3 A;  2VFP A;  4KH3 A;  4OM9 A;  2VFO A;  1QA2 A;  2VFN A;  3SYJ A;  1TYW A;  2VFM A;  1QA3 A;  3SZE A;  2XC1 A;  1TYU A;  1TYX A;  3AK5 A;  1DAB A;  1QRC A;  3TH0 A;  2VFQ A;  1QA1 A;  1TYV A;  1TSP A;  1QQ1 A;  2IOU G;  1CLW A;  1QRB A;  3RIQ A;  2V5I A;  3H09 A;  1WXR A; 
#chains in the Genus database with same CATH topology
 3ML3 A;  2QXZ A;  1RWR A;  3NB2 A;  4KH3 A;  3ZPP A;  4XKW A;  1JTA A;  3BH7 B;  2NST A;  3SYJ A;  2X6X A;  3GQ8 A;  4OJL A;  2XC1 A;  2PEC A;  1LLW A;  3AK5 A;  3GQ7 A;  1O8E A;  2X6Y A;  4XL9 A;  1NHC A;  2XT2 A;  4XLC A;  1K5C A;  4XN3 A;  2X3H A;  3LYC A;  4YEJ A;  3LJY A;  4MXN A;  3VSU A;  4YFO A;  3EQN A;  1OGM X;  4OPW A;  1OFM A;  1O8F A;  1BN8 A;  3VMV A;  1O88 A;  2BM7 A;  4PMH A;  4XOR A;  2BM6 A;  3KRG A;  2IOU G;  4YCQ A;  1OFL A;  2B0R A;  1PE9 A;  1HF2 A;  2X6W A;  1XG2 A;  2INV A;  2VFO A;  2VJI A;  3B8Y A;  4YZQ A;  1L1I A;  2VFN A;  1O8L A;  1OFE A;  1TYW A;  1O8G A;  2G0Y A;  3EQO A;  1LLZ A;  2QYU A;  2ODL A;  4XN0 A;  1KCC A;  2O0W A;  2XTY A;  4NK8 A;  1TYU A;  2O04 A;  3PSS A;  3VMW A;  2NT6 A;  1KTW A;  1OFD A;  2W7Z A;  4YZA A;  1PXZ A;  1HG8 A;  5AMV A;  2NTQ A;  1H80 A;  1K4Z A;  4Z06 A;  2BX6 A;  2VFQ A;  4MR0 A;  2UVE A;  2X85 A;  5C1C A;  1WMR A;  1IA5 A;  5DNS A;  4YZX A;  1EE6 A;  2QX3 A;  1TYV A;  1X0C A;  1TSP A;  2PYH A;  4YEI A;  1QQ1 A;  2VBM A;  1CLW A;  1QRB A;  1RU4 A;  3B90 A;  4W8S A;  4W8R A;  4XLA A;  4XLH A;  5JLV C;  5JMC B;  2NTB A;  1WXR A;  2IQ7 A;  3GRH A;  1O8M A;  2O6W A;  2J8I A;  1BHE A;  2O1D A;  2QY1 A;  4XOP A;  3DU1 X;  2VJJ A;  4OZZ A;  1DBG A;  4XMY A;  4YC5 A;  4OJ6 A;  5C1E A;  2VFM A;  2XTX A;  3SY2 A;  1QA3 A;  4XOT A;  4AVZ A;  1O8D A;  3B4N A;  4XNF A;  3NAW A;  2BSP A;  4U4B A;  1EZG A;  1GQ8 A;  4XON A;  4XM3 A;  3T9G A;  3N6Z A;  4OJO A;  1JRG A;  2QZA A;  1DAB A;  4YZ0 A;  3JUR A;  1LM1 A;  1QRC A;  3TH0 A;  1IDJ A;  2J8K A;  1O8H A;  4I84 A;  3SQV A;  2NZM A;  4JRA C;  3UW0 A;  3VST A;  4C2L A;  1OOC A;  4V02 C;  4XLF A;  4Z03 A;  3PSZ A;  2NSP A;  2UVF A;  3GQ9 A;  1O8J A;  1OGO X;  1IDK A;  1QJV A;  2BM5 A;  1K8F A;  2F3L A;  2V5I A;  4URR A;  1VBL A;  2NTP A;  3P4G A;  4OJP A;  1AIR A;  3PET A;  2VFP A;  1KCD A;  3WWG A;  4OM9 A;  4OZY A;  3ZSC A;  2NT9 A;  4W8Q A;  4EW9 A;  1O8K A;  2PYG A;  2XTW A;  1QA2 A;  3SUC A;  3FY3 A;  1IB4 A;  3SZE A;  3N90 A;  4XKV A;  4XR6 A;  1DBO A;  3LMW A;  2BM4 A;  1TYX A;  2O0V A;  3BH6 B;  4Z05 A;  4HWV A;  4YEL A;  4W8T A;  1CZF A;  1O8I A;  2XT4 A;  1KQ5 A;  4XQF A;  3GQA A;  3VSV A;  1QA1 A;  4U49 A;  2EWE A;  4XLE A;  2Z8G A;  2YUH A;  1RMG A;  4YDT A;  3JX8 A;  4NK6 A;  2O17 A;  2VBE A;  3RIQ A;  1QCX A;  1EA0 A;  1PLU A;  4OJ5 A;  3H09 A;  2INU A;  2VBK A; 
#chains in the Genus database with same CATH homology
 3ML3 A;  2B0R A;  3PET A;  1HF2 A;  2J8I A;  2VFP A;  4KH3 A;  4OM9 A;  2VFO A;  1QA2 A;  3BH7 B;  2VFN A;  3SYJ A;  1TYW A;  4OJ6 A;  2G0Y A;  2VFM A;  1QA3 A;  3SZE A;  4OJL A;  2XC1 A;  3N90 A;  5JMC B;  1TYU A;  2BM4 A;  1TYX A;  3AK5 A;  3N6Z A;  4OJO A;  3BH6 B;  5JLV C;  2W7Z A;  1DAB A;  1QRC A;  3LYC A;  3TH0 A;  3LJY A;  1K4Z A;  2BX6 A;  2VFQ A;  1KQ5 A;  4JRA C;  1QA1 A;  4OPW A;  4V02 C;  2BM5 A;  2YUH A;  1TYV A;  2BM7 A;  3JX8 A;  1TSP A;  2BM6 A;  1QQ1 A;  2IOU G;  1CLW A;  1QRB A;  2F3L A;  3RIQ A;  1K8F A;  2V5I A;  4OJ5 A;  3H09 A;  1WXR A;  3P4G A;  4OJP A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...