1DABA

The structure of bordetella pertussis virulence factor p.69 pertactin
Total Genus 182
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
182
sequence length
539
structure length
539
Chain Sequence
b'DWNNQSIVKTGERQHGIHIQGSDPGGVRTASGTTIKVSGRQAQGILLENPAAELQFRNGSVTSSGQLSDDGIRRFLGTVTVKAGKLVADHATLANVGDTWDDDGIALYVAGEQAQASIADSTLQGAGGVQIERGANVTVQRSAIVDGGLHIGALQSLQPEDLPPSRVVLRDTNVTAVPASGAPAAVSVLGASELTLDGGHITGGRAAGVAAMQGAVVHLQRATIRRGDALAGGAVPGGAVPGGAVPGGFGPGGFGPVLDGWYGVDVSGSSVELAQSIVEAPELGAAIRVGRGARVTVPGGSLSAPHGNVIETGGARRFAPQAAPLSITLQAGAHAQGKALLYRVLPEPVKLTLTGGADAQGDIVATELPSIPGTSIGPLDVALASQARWTGATRAVDSLSIDNATWVMTDNSNVGALRLASDGSVDFQQPAEAGRFKVLTVNTLAGSGLFRMNVFADLGLSDKLVVMQDASGQHRLWVRNSGSEPASANTLLLVQTPLGSAATFTLANKDGKVDIGTYRYRLAANGNGQWSLVGAKAPP'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords P.69 PERTACTIN
publication title Structure of Bordetella pertussis virulence factor P.69 pertactin.
pubmed doi rcsb
source organism Bordetella pertussis
molecule tags Cell adhesion
total genus 182
structure length 539
sequence length 539
ec nomenclature
pdb deposition date 1999-10-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03212 Pertactin Pertactin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1dabA00
3SZEA 1TSPA 2VFMA 1QA3A 3ML3A 1QRBA 2IOUG 1QRCA 3H09A 2XC1A 2V5IA 1QQ1A 1TYUA 3AK5A 1TYWA 2VFOA 2VFQA 2VFPA 1DABA 2VFNA 1WXRA 1QA2A 1QA1A 3RIQA 3TH0A 1TYXA 1TYVA 1CLWA 4OM9A 4KH3A 3SYJA
chains in the Genus database with same CATH superfamily
4XONA 1TSPA 4OJ5A 1JTAA 1IB4A 1O8FA 3EQOA 4XL9A 4OJPA 3VMVA 2NTQA 3VMWA 4YDTA 3ZSCA 3NB2A 2NTBA 1K5CA 4YEIA 3FY3A 4U4BA 2V5IA 1O8MA 3ZPPA 3LMWA 2UVFA 2NZMA 4XORA 2O1DA 4YC5A 2BM5A 4OJOA 4EW9A 1EA0A 2B0RA 1BHEA 2J8KA 2NSTA 4XQFA 2NSPA 1QCXA 2O04A 5AMVA 1WXRA 1JRGA 3TH0A 1LLZA 1TYVA 2X6WA 4XKWA 3LJYA 3GQ7A 3GQ9A 2BM7A 2XTXA 4KH3A 3B90A 2INVA 4NK6A 1KTWA 4XOPA 1PLUA 2VFMA 1QA3A 3DU1X 2UVEA 1O8KA 4XLEA 5JMCB 1O8JA 1BN8A 2BX6A 2IOUG 2VBKA 4XLFA 4YZAA 1KCDA 2XC1A 1HF2A 3BH6B 3SUCA 1OFDA 1VBLA 1TYUA 2BSPA 1L1IA 3JURA 1KCCA 1K8FA 1CZFA 4AVZA 2XT2A 3UW0A 1PXZA 1EZGA 2VFQA 4I84A 4OZZA 4W8SA 2O0VA 4YEJA 2F3LA 5C1EA 1O88A 1RWRA 3VSUA 1OGOX 4YZ0A 5DNSA 3RIQA 1OFEA 2QXZA 2VBEA 4V02C 1TYXA 2O0WA 1IDKA 1K4ZA 4MR0A 4XOTA 3T9GA 2X3HA 1O8DA 4OM9A 3GQ8A 1O8EA 2EWEA 4XNFA 3N90A 3SY2A 3VSTA 3VSVA 4JRAC 2O17A 4MXNA 1LLWA 4YZQA 1XG2A 2XTWA 1OFLA 2PECA 3ML3A 1QRCA 3H09A 1NHCA 3N6ZA 2QY1A 1EE6A 2VJIA 4W8QA 1QJVA 3PSSA 2QZAA 2Z8GA 1DBOA 1LM1A 3AK5A 3LYCA 1TYWA 2NT6A 2NT9A 2QYUA 1H80A 2VFOA 4XMYA 2VFPA 4OJ6A 1KQ5A 1O8IA 2VFNA 2VJJA 3BH7B 3PETA 2O6WA 4XLAA 1IA5A 4URRA 1QA1A 3WWGA 3JX8A 1IDJA 3GRHA 3PSZA 4Z03A 2INUA 4W8TA 4C2LA 4W8RA 4YZXA 1RMGA 1CLWA 4OPWA 2X85A 4XLHA 1OFMA 1HG8A 4OJLA 3SZEA 2NTPA 1RU4A 3NAWA 1OGMX 1X0CA 1PE9A 1O8LA 2X6XA 1GQ8A 3P4GA 1AIRA 1QRBA 5C1CA 2XT4A 4PMHA 2X6YA 4YFOA 3B4NA 2VBMA 1QQ1A 4XR6A 4NK8A 1O8HA 2XTYA 3B8YA 4U49A 1WMRA 4Z05A 4XN3A 2QX3A 2PYGA 4XKVA 2BM6A 2ODLA 4XN0A 1DABA 2YUHA 1OOCA 3KRGA 1QA2A 4OZYA 2IQ7A 5JLVC 2BM4A 2J8IA 2W7ZA 4HWVA 3SQVA 1O8GA 4YCQA 4XM3A 4YELA 4Z06A 1DBGA 3EQNA 2G0YA 3SYJA 4XLCA 3GQAA 2PYHA
chains in the Genus database with same CATH topology
4JRAC 3SZEA 1TSPA 4OJ5A 2VFMA 1QA3A 4OJPA 3P4GA 3ML3A 5JMCB 1QRBA 2BX6A 1QRCA 2IOUG 3H09A 3N6ZA 2XC1A 1HF2A 3BH6B 2V5IA 1QQ1A 1TYUA 3SYJA 3AK5A 1K8FA 3LYCA 1TYWA 2BM5A 4OJOA 2B0RA 2BM6A 2VFOA 2VFQA 2VFPA 1KQ5A 2VFNA 3BH7B 3PETA 2YUHA 4OJ6A 1DABA 1QA2A 1WXRA 2F3LA 5JLVC 1QA1A 2BM4A 3JX8A 2J8IA 2W7ZA 3RIQA 3TH0A 4V02C 1TYXA 1TYVA 1K4ZA 1CLWA 3LJYA 4OPWA 4OM9A 2BM7A 2G0YA 4KH3A 3N90A 4OJLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SZE A;  1TSP A;  2VFM A;  1QA3 A;  3ML3 A;  1QRB A;  2IOU G;  1QRC A;  3H09 A;  2XC1 A;  2V5I A;  1QQ1 A;  1TYU A;  3AK5 A;  1TYW A;  2VFO A;  2VFQ A;  2VFP A;  1DAB A;  2VFN A;  1WXR A;  1QA2 A;  1QA1 A;  3RIQ A;  3TH0 A;  1TYX A;  1TYV A;  1CLW A;  4OM9 A;  4KH3 A;  3SYJ A; 
#chains in the Genus database with same CATH topology
 4XON A;  1TSP A;  4OJ5 A;  1JTA A;  1IB4 A;  1O8F A;  3EQO A;  4XL9 A;  4OJP A;  3VMV A;  2NTQ A;  3VMW A;  4YDT A;  3ZSC A;  3NB2 A;  2NTB A;  1K5C A;  4YEI A;  3FY3 A;  4U4B A;  2V5I A;  1O8M A;  3ZPP A;  3LMW A;  2UVF A;  2NZM A;  4XOR A;  2O1D A;  4YC5 A;  2BM5 A;  4OJO A;  4EW9 A;  1EA0 A;  2B0R A;  1BHE A;  2J8K A;  2NST A;  4XQF A;  2NSP A;  1QCX A;  2O04 A;  5AMV A;  1WXR A;  1JRG A;  3TH0 A;  1LLZ A;  1TYV A;  2X6W A;  4XKW A;  3LJY A;  3GQ7 A;  3GQ9 A;  2BM7 A;  2XTX A;  4KH3 A;  3B90 A;  2INV A;  4NK6 A;  1KTW A;  4XOP A;  1PLU A;  2VFM A;  1QA3 A;  3DU1 X;  2UVE A;  1O8K A;  4XLE A;  5JMC B;  1O8J A;  1BN8 A;  2BX6 A;  2IOU G;  2VBK A;  4XLF A;  4YZA A;  1KCD A;  2XC1 A;  1HF2 A;  3BH6 B;  3SUC A;  1OFD A;  1VBL A;  1TYU A;  2BSP A;  1L1I A;  3JUR A;  1KCC A;  1K8F A;  1CZF A;  4AVZ A;  2XT2 A;  3UW0 A;  1PXZ A;  1EZG A;  2VFQ A;  4I84 A;  4OZZ A;  4W8S A;  2O0V A;  4YEJ A;  2F3L A;  5C1E A;  1O88 A;  1RWR A;  3VSU A;  1OGO X;  4YZ0 A;  5DNS A;  3RIQ A;  1OFE A;  2QXZ A;  2VBE A;  4V02 C;  1TYX A;  2O0W A;  1IDK A;  1K4Z A;  4MR0 A;  4XOT A;  3T9G A;  2X3H A;  1O8D A;  4OM9 A;  3GQ8 A;  1O8E A;  2EWE A;  4XNF A;  3N90 A;  3SY2 A;  3VST A;  3VSV A;  4JRA C;  2O17 A;  4MXN A;  1LLW A;  4YZQ A;  1XG2 A;  2XTW A;  1OFL A;  2PEC A;  3ML3 A;  1QRC A;  3H09 A;  1NHC A;  3N6Z A;  2QY1 A;  1EE6 A;  2VJI A;  4W8Q A;  1QJV A;  3PSS A;  2QZA A;  2Z8G A;  1DBO A;  1LM1 A;  3AK5 A;  3LYC A;  1TYW A;  2NT6 A;  2NT9 A;  2QYU A;  1H80 A;  2VFO A;  4XMY A;  2VFP A;  4OJ6 A;  1KQ5 A;  1O8I A;  2VFN A;  2VJJ A;  3BH7 B;  3PET A;  2O6W A;  4XLA A;  1IA5 A;  4URR A;  1QA1 A;  3WWG A;  3JX8 A;  1IDJ A;  3GRH A;  3PSZ A;  4Z03 A;  2INU A;  4W8T A;  4C2L A;  4W8R A;  4YZX A;  1RMG A;  1CLW A;  4OPW A;  2X85 A;  4XLH A;  1OFM A;  1HG8 A;  4OJL A;  3SZE A;  2NTP A;  1RU4 A;  3NAW A;  1OGM X;  1X0C A;  1PE9 A;  1O8L A;  2X6X A;  1GQ8 A;  3P4G A;  1AIR A;  1QRB A;  5C1C A;  2XT4 A;  4PMH A;  2X6Y A;  4YFO A;  3B4N A;  2VBM A;  1QQ1 A;  4XR6 A;  4NK8 A;  1O8H A;  2XTY A;  3B8Y A;  4U49 A;  1WMR A;  4Z05 A;  4XN3 A;  2QX3 A;  2PYG A;  4XKV A;  2BM6 A;  2ODL A;  4XN0 A;  1DAB A;  2YUH A;  1OOC A;  3KRG A;  1QA2 A;  4OZY A;  2IQ7 A;  5JLV C;  2BM4 A;  2J8I A;  2W7Z A;  4HWV A;  3SQV A;  1O8G A;  4YCQ A;  4XM3 A;  4YEL A;  4Z06 A;  1DBG A;  3EQN A;  2G0Y A;  3SYJ A;  4XLC A;  3GQA A;  2PYH A; 
#chains in the Genus database with same CATH homology
 4JRA C;  3SZE A;  1TSP A;  4OJ5 A;  2VFM A;  1QA3 A;  4OJP A;  3P4G A;  3ML3 A;  5JMC B;  1QRB A;  2BX6 A;  1QRC A;  2IOU G;  3H09 A;  3N6Z A;  2XC1 A;  1HF2 A;  3BH6 B;  2V5I A;  1QQ1 A;  1TYU A;  3SYJ A;  3AK5 A;  1K8F A;  3LYC A;  1TYW A;  2BM5 A;  4OJO A;  2B0R A;  2BM6 A;  2VFO A;  2VFQ A;  2VFP A;  1KQ5 A;  2VFN A;  3BH7 B;  3PET A;  2YUH A;  4OJ6 A;  1DAB A;  1QA2 A;  1WXR A;  2F3L A;  5JLV C;  1QA1 A;  2BM4 A;  3JX8 A;  2J8I A;  2W7Z A;  3RIQ A;  3TH0 A;  4V02 C;  1TYX A;  1TYV A;  1K4Z A;  1CLW A;  3LJY A;  4OPW A;  4OM9 A;  2BM7 A;  2G0Y A;  4KH3 A;  3N90 A;  4OJL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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