1DBGA

Crystal structure of chondroitinase b
Total Genus 180
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
180
sequence length
481
structure length
481
Chain Sequence
QVVASNETLYQVVKEVKPGGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKDGNRAIQAWKSHGPGLVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPGMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQGTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGSRHVIACNYFELSETIKSRGNAALYLNPGAMASEHALAFDMLIANNAFINVNGYAIHFNPLDERRKEYCAANRLKFETPHQLMLKGNLFFKDKPYVYPFFKDDYFIAGKNSWTGNVALGVEKGIPVNISANRSAYKPVKIKDIQPIEGIALDLNALISKGITGKPLSWDEVRPYWLKEMPGTYALTARLSADRAAKFKAVIKRNKEH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords CHONDROITINASE B
publication title Crystal structure of chondroitinase B from Flavobacterium heparinum and its complex with a disaccharide product at 1.7 A resolution.
pubmed doi rcsb
molecule tags Lyase
total genus 180
structure length 481
sequence length 481
ec nomenclature ec 4.2.2.19: Chondroitin B lyase.
pdb deposition date 1999-11-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14592 Chondroitinas_B Chondroitinase B
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1dbgA00
1IA5A 1X0CA 2ODLA 3EQOA 2NTPA 3ZSCA 4XOPA 3SUCA 2X6XA 3VSUA 4HWVA 2PYGA 2IQ7A 2NZMA 4W8SA 1KCDA 2NTBA 2VBEA 1KCCA 4XKWA 1O8DA 2NSTA 2O0WA 2VBMA 1VBLA 2BSPA 3FY3A 4I84A 4EW9A 4XM3A 1WMRA 1OOCA 1XG2A 4XLEA 2UVEA 3B90A 1IB4A 1PLUA 4PMHA 4XKVA 2X85A 1RU4A 4URRA 4OJPA 4NK8A 1O8JA 1QJVA 3GRHA 4YZQA 4XORA 1PE9A 3UW0A 1O8IA 4OJLA 3VSTA 4XLHA 1O8EA 4XONA 1IDKA 1AIRA 1O88A 1IDJA 1OGMX 3GQ9A 2QY1A 1JTAA 1OGOX 4YEJA 1HG8A 4Z03A 4XOTA 1QCXA 3LMWA 4Z06A 4NK6A 2VJIA 2X3HA 4C2LA 4Z05A 1JRGA 1RWRA 3KRGA 4XN3A 3VMVA 4XLFA 4XR6A 4W8RA 1EE6A 2VJJA 2Z8GA 4MR0A 4OJOA 2QXZA 1O8HA 2O1DA 1NHCA 3VSVA 1CZFA 1O8FA 1RMGA 3T9GA 4XQFA 2VBKA 3GQ8A 5C1CA 2X6WA 2QX3A 1BHEA 2INVA 4YELA 4U49A 5AMVA 4OJ6A 1OFLA 3VMWA 3ZPPA 3GQAA 4U4BA 2PECA 2O04A 1O8MA 2NT9A 4MXNA 1K5CA 4OZZA 4XL9A 5C1EA 2UVFA 2NT6A 3GQ7A 4XMYA 4W8QA 4YZ0A 1H80A 4YZXA 4XLAA 3B4NA 1O8LA 2NTQA 1KTWA 1DBOA 1OFMA 2PYHA 4YZAA 1O8KA 2X6YA 1BN8A 1O8GA 3JURA 3EQNA 4W8TA 2INUA 4OJ5A 4OZYA 4AVZA 1PXZA 4XLCA 2NSPA 3B8YA 2EWEA 1DBGA 4XN0A 4XNFA 3WWGA 2O0VA 2O17A 1GQ8A
chains in the Genus database with same CATH superfamily
1IA5A 1X0CA 2ODLA 4YDTA 3EQOA 2NTPA 3ZSCA 4XOPA 3SUCA 2X6XA 3VSUA 4HWVA 2J8IA 1TYVA 3TH0A 3SZEA 2PYGA 2IQ7A 2NZMA 4W8SA 2XT4A 1TYUA 4OM9A 1KCDA 2NTBA 2VBEA 2QYUA 3PETA 1HF2A 4XKWA 1O8DA 1KCCA 2NSTA 2QZAA 2F3LA 1EZGA 3JX8A 2O0WA 2VBMA 1VBLA 2BSPA 3FY3A 4I84A 1OFDA 4EW9A 1GQ8A 4XM3A 1TYXA 1WMRA 1OOCA 1KQ5A 1XG2A 1TSPA 4XLEA 2UVEA 1TYWA 3B90A 1IB4A 1PLUA 3BH7B 4PMHA 4XKVA 1DABA 1QA3A 2X85A 1RU4A 1QRCA 4URRA 2XT2A 4OJPA 1QQ1A 4NK8A 1O8JA 1QJVA 3GRHA 3ML3A 4YZQA 4XORA 1PE9A 3UW0A 4YCQA 3SQVA 3DU1X 1O8IA 4OJLA 3VSTA 1OFEA 4XLHA 1O8EA 4XONA 1QRBA 1IDKA 1LLZA 1AIRA 1O88A 1IDJA 1OGMX 3GQ9A 2J8KA 2QY1A 2VFOA 1JTAA 1OGOX 4YEJA 1HG8A 4Z03A 4XOTA 1LM1A 1QCXA 3LMWA 4Z06A 1LLWA 4NK6A 2VJIA 4V02C 4JRAC 3BH6B 2X3HA 3LYCA 4C2LA 4Z05A 1JRGA 1RWRA 1L1IA 2V5IA 3KRGA 4YEIA 4XN3A 2VFQA 3VMVA 2BM4A 4XLFA 2YUHA 4XR6A 2VFNA 2VFPA 4W8RA 1EE6A 2VJJA 2Z8GA 4MR0A 4OJOA 2QXZA 1O8HA 2O1DA 5DNSA 1NHCA 3VSVA 1CZFA 5JLVC 1O8FA 2G0YA 1RMGA 3T9GA 4XQFA 2VBKA 3GQ8A 1K4ZA 5C1CA 3SY2A 3P4GA 3N6ZA 2X6WA 3NAWA 2QX3A 1BHEA 2INVA 2XTWA 2BM5A 5JMCB 4YELA 4U49A 5AMVA 2XTYA 4OJ6A 3LJYA 1OFLA 2O6WA 3VMWA 3ZPPA 3GQAA 4U4BA 2PECA 2O04A 1O8MA 2NT9A 4MXNA 2BM6A 1K5CA 4OZZA 4XL9A 5C1EA 4KH3A 1QA1A 3PSSA 3H09A 1K8FA 2UVFA 1CLWA 3N90A 2NT6A 3GQ7A 2W7ZA 4XMYA 2BX6A 4W8QA 4YZ0A 1H80A 4YZXA 4XLAA 1QA2A 2B0RA 3B4NA 1O8LA 2NTQA 1KTWA 1DBOA 1OFMA 2PYHA 2XC1A 2XTXA 3PSZA 4YZAA 1O8KA 2X6YA 1BN8A 1O8GA 3JURA 3EQNA 4W8TA 3SYJA 1WXRA 2INUA 4OJ5A 3NB2A 4OZYA 4AVZA 1PXZA 2IOUG 4XLCA 2NSPA 4OPWA 3B8YA 2EWEA 1DBGA 2VFMA 4XN0A 4XNFA 3AK5A 1EA0A 3RIQA 3WWGA 2O0VA 4YFOA 2O17A 2BM7A 4YC5A
chains in the Genus database with same CATH topology
1IA5A 1X0CA 2ODLA 3EQOA 2NTPA 3ZSCA 4XOPA 3SUCA 2X6XA 3VSUA 4HWVA 2PYGA 2IQ7A 2NZMA 4W8SA 1KCDA 2NTBA 2VBEA 1KCCA 4XKWA 1O8DA 2NSTA 2O0WA 2VBMA 1VBLA 2BSPA 3FY3A 4I84A 4EW9A 4XM3A 1WMRA 1OOCA 1XG2A 4XLEA 2UVEA 3B90A 1IB4A 1PLUA 4PMHA 4XKVA 2X85A 1RU4A 4URRA 4OJPA 4NK8A 1O8JA 1QJVA 3GRHA 4YZQA 4XORA 1PE9A 3UW0A 1O8IA 4OJLA 3VSTA 4XLHA 1O8EA 4XONA 1IDKA 1AIRA 1O88A 1IDJA 1OGMX 3GQ9A 2QY1A 1JTAA 1OGOX 4YEJA 1HG8A 4Z03A 4XOTA 1QCXA 3LMWA 4Z06A 4NK6A 2VJIA 2X3HA 4C2LA 4Z05A 1JRGA 1RWRA 3KRGA 4XN3A 3VMVA 4XLFA 4XR6A 4W8RA 1EE6A 2VJJA 2Z8GA 4MR0A 4OJOA 2QXZA 1O8HA 2O1DA 1NHCA 3VSVA 1CZFA 1O8FA 1RMGA 3T9GA 4XQFA 2VBKA 3GQ8A 5C1CA 2X6WA 2QX3A 1BHEA 2INVA 4YELA 4U49A 5AMVA 4OJ6A 1OFLA 3VMWA 3ZPPA 3GQAA 4U4BA 2PECA 2O04A 1O8MA 2NT9A 4MXNA 1K5CA 4OZZA 4XL9A 5C1EA 2UVFA 2NT6A 3GQ7A 4XMYA 4W8QA 4YZ0A 1H80A 4YZXA 4XLAA 3B4NA 1O8LA 2NTQA 1KTWA 1DBOA 1OFMA 2PYHA 4YZAA 1O8KA 2X6YA 1BN8A 1O8GA 3JURA 3EQNA 4W8TA 2INUA 4OJ5A 4OZYA 4AVZA 1PXZA 4XLCA 2NSPA 3B8YA 2EWEA 1DBGA 4XN0A 4XNFA 3WWGA 2O0VA 2O17A 1GQ8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IA5 A;  1X0C A;  2ODL A;  3EQO A;  2NTP A;  3ZSC A;  4XOP A;  3SUC A;  2X6X A;  3VSU A;  4HWV A;  2PYG A;  2IQ7 A;  2NZM A;  4W8S A;  1KCD A;  2NTB A;  2VBE A;  1KCC A;  4XKW A;  1O8D A;  2NST A;  2O0W A;  2VBM A;  1VBL A;  2BSP A;  3FY3 A;  4I84 A;  4EW9 A;  4XM3 A;  1WMR A;  1OOC A;  1XG2 A;  4XLE A;  2UVE A;  3B90 A;  1IB4 A;  1PLU A;  4PMH A;  4XKV A;  2X85 A;  1RU4 A;  4URR A;  4OJP A;  4NK8 A;  1O8J A;  1QJV A;  3GRH A;  4YZQ A;  4XOR A;  1PE9 A;  3UW0 A;  1O8I A;  4OJL A;  3VST A;  4XLH A;  1O8E A;  4XON A;  1IDK A;  1AIR A;  1O88 A;  1IDJ A;  1OGM X;  3GQ9 A;  2QY1 A;  1JTA A;  1OGO X;  4YEJ A;  1HG8 A;  4Z03 A;  4XOT A;  1QCX A;  3LMW A;  4Z06 A;  4NK6 A;  2VJI A;  2X3H A;  4C2L A;  4Z05 A;  1JRG A;  1RWR A;  3KRG A;  4XN3 A;  3VMV A;  4XLF A;  4XR6 A;  4W8R A;  1EE6 A;  2VJJ A;  2Z8G A;  4MR0 A;  4OJO A;  2QXZ A;  1O8H A;  2O1D A;  1NHC A;  3VSV A;  1CZF A;  1O8F A;  1RMG A;  3T9G A;  4XQF A;  2VBK A;  3GQ8 A;  5C1C A;  2X6W A;  2QX3 A;  1BHE A;  2INV A;  4YEL A;  4U49 A;  5AMV A;  4OJ6 A;  1OFL A;  3VMW A;  3ZPP A;  3GQA A;  4U4B A;  2PEC A;  2O04 A;  1O8M A;  2NT9 A;  4MXN A;  1K5C A;  4OZZ A;  4XL9 A;  5C1E A;  2UVF A;  2NT6 A;  3GQ7 A;  4XMY A;  4W8Q A;  4YZ0 A;  1H80 A;  4YZX A;  4XLA A;  3B4N A;  1O8L A;  2NTQ A;  1KTW A;  1DBO A;  1OFM A;  2PYH A;  4YZA A;  1O8K A;  2X6Y A;  1BN8 A;  1O8G A;  3JUR A;  3EQN A;  4W8T A;  2INU A;  4OJ5 A;  4OZY A;  4AVZ A;  1PXZ A;  4XLC A;  2NSP A;  3B8Y A;  2EWE A;  1DBG A;  4XN0 A;  4XNF A;  3WWG A;  2O0V A;  2O17 A;  1GQ8 A; 
#chains in the Genus database with same CATH topology
 1IA5 A;  1X0C A;  2ODL A;  4YDT A;  3EQO A;  2NTP A;  3ZSC A;  4XOP A;  3SUC A;  2X6X A;  3VSU A;  4HWV A;  2J8I A;  1TYV A;  3TH0 A;  3SZE A;  2PYG A;  2IQ7 A;  2NZM A;  4W8S A;  2XT4 A;  1TYU A;  4OM9 A;  1KCD A;  2NTB A;  2VBE A;  2QYU A;  3PET A;  1HF2 A;  4XKW A;  1O8D A;  1KCC A;  2NST A;  2QZA A;  2F3L A;  1EZG A;  3JX8 A;  2O0W A;  2VBM A;  1VBL A;  2BSP A;  3FY3 A;  4I84 A;  1OFD A;  4EW9 A;  1GQ8 A;  4XM3 A;  1TYX A;  1WMR A;  1OOC A;  1KQ5 A;  1XG2 A;  1TSP A;  4XLE A;  2UVE A;  1TYW A;  3B90 A;  1IB4 A;  1PLU A;  3BH7 B;  4PMH A;  4XKV A;  1DAB A;  1QA3 A;  2X85 A;  1RU4 A;  1QRC A;  4URR A;  2XT2 A;  4OJP A;  1QQ1 A;  4NK8 A;  1O8J A;  1QJV A;  3GRH A;  3ML3 A;  4YZQ A;  4XOR A;  1PE9 A;  3UW0 A;  4YCQ A;  3SQV A;  3DU1 X;  1O8I A;  4OJL A;  3VST A;  1OFE A;  4XLH A;  1O8E A;  4XON A;  1QRB A;  1IDK A;  1LLZ A;  1AIR A;  1O88 A;  1IDJ A;  1OGM X;  3GQ9 A;  2J8K A;  2QY1 A;  2VFO A;  1JTA A;  1OGO X;  4YEJ A;  1HG8 A;  4Z03 A;  4XOT A;  1LM1 A;  1QCX A;  3LMW A;  4Z06 A;  1LLW A;  4NK6 A;  2VJI A;  4V02 C;  4JRA C;  3BH6 B;  2X3H A;  3LYC A;  4C2L A;  4Z05 A;  1JRG A;  1RWR A;  1L1I A;  2V5I A;  3KRG A;  4YEI A;  4XN3 A;  2VFQ A;  3VMV A;  2BM4 A;  4XLF A;  2YUH A;  4XR6 A;  2VFN A;  2VFP A;  4W8R A;  1EE6 A;  2VJJ A;  2Z8G A;  4MR0 A;  4OJO A;  2QXZ A;  1O8H A;  2O1D A;  5DNS A;  1NHC A;  3VSV A;  1CZF A;  5JLV C;  1O8F A;  2G0Y A;  1RMG A;  3T9G A;  4XQF A;  2VBK A;  3GQ8 A;  1K4Z A;  5C1C A;  3SY2 A;  3P4G A;  3N6Z A;  2X6W A;  3NAW A;  2QX3 A;  1BHE A;  2INV A;  2XTW A;  2BM5 A;  5JMC B;  4YEL A;  4U49 A;  5AMV A;  2XTY A;  4OJ6 A;  3LJY A;  1OFL A;  2O6W A;  3VMW A;  3ZPP A;  3GQA A;  4U4B A;  2PEC A;  2O04 A;  1O8M A;  2NT9 A;  4MXN A;  2BM6 A;  1K5C A;  4OZZ A;  4XL9 A;  5C1E A;  4KH3 A;  1QA1 A;  3PSS A;  3H09 A;  1K8F A;  2UVF A;  1CLW A;  3N90 A;  2NT6 A;  3GQ7 A;  2W7Z A;  4XMY A;  2BX6 A;  4W8Q A;  4YZ0 A;  1H80 A;  4YZX A;  4XLA A;  1QA2 A;  2B0R A;  3B4N A;  1O8L A;  2NTQ A;  1KTW A;  1DBO A;  1OFM A;  2PYH A;  2XC1 A;  2XTX A;  3PSZ A;  4YZA A;  1O8K A;  2X6Y A;  1BN8 A;  1O8G A;  3JUR A;  3EQN A;  4W8T A;  3SYJ A;  1WXR A;  2INU A;  4OJ5 A;  3NB2 A;  4OZY A;  4AVZ A;  1PXZ A;  2IOU G;  4XLC A;  2NSP A;  4OPW A;  3B8Y A;  2EWE A;  1DBG A;  2VFM A;  4XN0 A;  4XNF A;  3AK5 A;  1EA0 A;  3RIQ A;  3WWG A;  2O0V A;  4YFO A;  2O17 A;  2BM7 A;  4YC5 A; 
#chains in the Genus database with same CATH homology
 1IA5 A;  1X0C A;  2ODL A;  3EQO A;  2NTP A;  3ZSC A;  4XOP A;  3SUC A;  2X6X A;  3VSU A;  4HWV A;  2PYG A;  2IQ7 A;  2NZM A;  4W8S A;  1KCD A;  2NTB A;  2VBE A;  1KCC A;  4XKW A;  1O8D A;  2NST A;  2O0W A;  2VBM A;  1VBL A;  2BSP A;  3FY3 A;  4I84 A;  4EW9 A;  4XM3 A;  1WMR A;  1OOC A;  1XG2 A;  4XLE A;  2UVE A;  3B90 A;  1IB4 A;  1PLU A;  4PMH A;  4XKV A;  2X85 A;  1RU4 A;  4URR A;  4OJP A;  4NK8 A;  1O8J A;  1QJV A;  3GRH A;  4YZQ A;  4XOR A;  1PE9 A;  3UW0 A;  1O8I A;  4OJL A;  3VST A;  4XLH A;  1O8E A;  4XON A;  1IDK A;  1AIR A;  1O88 A;  1IDJ A;  1OGM X;  3GQ9 A;  2QY1 A;  1JTA A;  1OGO X;  4YEJ A;  1HG8 A;  4Z03 A;  4XOT A;  1QCX A;  3LMW A;  4Z06 A;  4NK6 A;  2VJI A;  2X3H A;  4C2L A;  4Z05 A;  1JRG A;  1RWR A;  3KRG A;  4XN3 A;  3VMV A;  4XLF A;  4XR6 A;  4W8R A;  1EE6 A;  2VJJ A;  2Z8G A;  4MR0 A;  4OJO A;  2QXZ A;  1O8H A;  2O1D A;  1NHC A;  3VSV A;  1CZF A;  1O8F A;  1RMG A;  3T9G A;  4XQF A;  2VBK A;  3GQ8 A;  5C1C A;  2X6W A;  2QX3 A;  1BHE A;  2INV A;  4YEL A;  4U49 A;  5AMV A;  4OJ6 A;  1OFL A;  3VMW A;  3ZPP A;  3GQA A;  4U4B A;  2PEC A;  2O04 A;  1O8M A;  2NT9 A;  4MXN A;  1K5C A;  4OZZ A;  4XL9 A;  5C1E A;  2UVF A;  2NT6 A;  3GQ7 A;  4XMY A;  4W8Q A;  4YZ0 A;  1H80 A;  4YZX A;  4XLA A;  3B4N A;  1O8L A;  2NTQ A;  1KTW A;  1DBO A;  1OFM A;  2PYH A;  4YZA A;  1O8K A;  2X6Y A;  1BN8 A;  1O8G A;  3JUR A;  3EQN A;  4W8T A;  2INU A;  4OJ5 A;  4OZY A;  4AVZ A;  1PXZ A;  4XLC A;  2NSP A;  3B8Y A;  2EWE A;  1DBG A;  4XN0 A;  4XNF A;  3WWG A;  2O0V A;  2O17 A;  1GQ8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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