1DBGA

Crystal structure of chondroitinase b
Total Genus 180
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
180
sequence length
481
structure length
481
Chain Sequence
b'QVVASNETLYQVVKEVKPGGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKDGNRAIQAWKSHGPGLVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPGMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQGTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGSRHVIACNYFELSETIKSRGNAALYLNPGAMASEHALAFDMLIANNAFINVNGYAIHFNPLDERRKEYCAANRLKFETPHQLMLKGNLFFKDKPYVYPFFKDDYFIAGKNSWTGNVALGVEKGIPVNISANRSAYKPVKIKDIQPIEGIALDLNALISKGITGKPLSWDEVRPYWLKEMPGTYALTARLSADRAAKFKAVIKRNKEH'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords CHONDROITINASE B
publication title Crystal structure of chondroitinase B from Flavobacterium heparinum and its complex with a disaccharide product at 1.7 A resolution.
pubmed doi rcsb
molecule tags Lyase
total genus 180
structure length 481
sequence length 481
ec nomenclature ec 4.2.2.19: Chondroitin B lyase.
pdb deposition date 1999-11-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14592 Chondroitinas_B Chondroitinase B
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1dbgA00
2PECA 4I84A 4XNFA 2NTQA 3EQNA 2VJIA 1AIRA 4OZYA 1JRGA 3VMVA 2QX3A 2NZMA 3EQOA 1RWRA 3ZPPA 1IA5A 2BSPA 4XORA 4EW9A 3VSTA 2NT6A 1IDKA 4YZQA 1O8MA 4XOPA 4Z05A 4XKVA 1OGOX 1WMRA 4YZAA 1H80A 1O8LA 2VBMA 4XN0A 1OFMA 4YZXA 2X6YA 1HG8A 1DBGA 1CZFA 1PXZA 2X6WA 4YELA 1KCCA 1IDJA 2PYHA 4OJOA 4XONA 4YZ0A 1OGMX 4XQFA 3GQ8A 1EE6A 4XN3A 1O8DA 4NK6A 1O8IA 4W8QA 1XG2A 2NSPA 5AMVA 1OFLA 2EWEA 3KRGA 3SUCA 3GQAA 2PYGA 1RU4A 3UW0A 5C1CA 4XLFA 1NHCA 2VBEA 3LMWA 1PE9A 1JTAA 4OJ6A 1K5CA 1X0CA 2O04A 4C2LA 3B8YA 4AVZA 4OJ5A 4XLHA 1KCDA 2O17A 4HWVA 2O0VA 4XR6A 2O0WA 4W8SA 1DBOA 2INUA 1QCXA 4XLCA 1O8FA 4XLAA 1BHEA 4MXNA 1VBLA 2QXZA 3GRHA 2NT9A 3VMWA 5C1EA 1O8KA 4W8TA 3B4NA 2X85A 3VSVA 3FY3A 3GQ9A 4NK8A 2VJJA 3ZSCA 2IQ7A 3B90A 1KTWA 1PLUA 3JURA 4XOTA 1BN8A 1O8GA 2NTBA 4U4BA 2X6XA 4XMYA 2Z8GA 4W8RA 3T9GA 1QJVA 2NTPA 4U49A 3GQ7A 4Z03A 4OZZA 1O8JA 3VSUA 4XL9A 3WWGA 2INVA 2ODLA 4XLEA 4Z06A 4MR0A 1RMGA 2NSTA 2QY1A 1GQ8A 4XKWA 4YEJA 1O8HA 2X3HA 1IB4A 4URRA 2O1DA 4PMHA 4OJLA 2UVEA 4XM3A 1OOCA 1O88A 4OJPA 2UVFA 1O8EA 2VBKA
chains in the Genus database with same CATH superfamily
2PECA 2VFNA 4I84A 2QYUA 4XNFA 2V5IA 2NTQA 2XTWA 3EQNA 2VJIA 1AIRA 4OZYA 1JRGA 3SY2A 2BM6A 3VMVA 2QX3A 3H09A 1K4ZA 2NZMA 2VFMA 3EQOA 1RWRA 3ZPPA 1IA5A 2BSPA 4XORA 4EW9A 3VSTA 1TYVA 2NT6A 1IDKA 4YZQA 1O8MA 4XOPA 4Z05A 4XKVA 2BM7A 1TYUA 1OGOX 1TSPA 3NAWA 2XC1A 3PSSA 1WXRA 1WMRA 4YZAA 1H80A 1O8LA 2VBMA 1CLWA 4XN0A 1OFMA 4YZXA 2X6YA 1HG8A 1DBGA 1CZFA 1QQ1A 1PXZA 2X6WA 4YELA 1KCCA 1LM1A 2J8IA 4YCQA 1IDJA 1K8FA 2PYHA 2VFPA 4OJOA 4XONA 4YZ0A 1OGMX 4XQFA 3GQ8A 3PSZA 1EE6A 4XN3A 3AK5A 1O8DA 4NK6A 3DU1X 3ML3A 1O8IA 1OFDA 1QA2A 4W8QA 1XG2A 4OPWA 2NSPA 4JRAC 2W7ZA 3NB2A 2BM5A 2J8KA 5AMVA 2VBKA 1OFLA 2EWEA 1OFEA 3KRGA 2YUHA 3SUCA 3GQAA 2PYGA 1QA1A 1RU4A 3UW0A 5C1CA 2BX6A 4XLFA 2BM4A 2VBEA 1NHCA 3LMWA 1PE9A 1JTAA 3BH7B 4OJ6A 1X0CA 2O04A 3TH0A 4C2LA 1K5CA 3B8YA 5DNSA 4OJ5A 4XLHA 4AVZA 2O17A 1KCDA 4HWVA 2O0VA 2XT2A 1TYXA 2O0WA 4W8SA 1HF2A 1DBOA 2INUA 1QCXA 4XR6A 3RIQA 4YEIA 1QA3A 4XLCA 3N6ZA 1O8FA 2O6WA 1BHEA 4XLAA 1QRBA 1VBLA 2QXZA 4KH3A 4MXNA 3SQVA 3GRHA 5JLVC 3SZEA 5JMCB 2NT9A 3VMWA 4YFOA 5C1EA 1O8KA 1TYWA 4W8TA 3B4NA 2QZAA 2X85A 2XTXA 3FY3A 3GQ9A 4NK8A 3VSVA 1EA0A 2VJJA 4V02C 3ZSCA 2IQ7A 3B90A 2B0RA 2XT4A 1KTWA 1PLUA 3N90A 3JURA 3LYCA 4XOTA 1BN8A 1O8GA 3PETA 2NTBA 4U4BA 2X6XA 4XMYA 2Z8GA 3SYJA 4W8RA 2G0YA 3T9GA 1QJVA 1LLZA 2NTPA 3GQ7A 3P4GA 4U49A 4OZZA 4Z03A 1L1IA 4OM9A 1O8JA 2F3LA 1KQ5A 1DABA 3VSUA 4XL9A 3WWGA 2INVA 2ODLA 3BH6B 4XLEA 4Z06A 1EZGA 1QRCA 2VFOA 2XTYA 4MR0A 1RMGA 2NSTA 2QY1A 3JX8A 1GQ8A 2IOUG 4XKWA 4YEJA 2X3HA 1IB4A 4YC5A 4URRA 1LLWA 2O1DA 4YDTA 4PMHA 4OJLA 2UVEA 4XM3A 1OOCA 1O88A 4OJPA 2UVFA 3LJYA 1O8EA 2VFQA 1O8HA
chains in the Genus database with same CATH topology
2PECA 4I84A 4XNFA 2NTQA 3EQNA 2VJIA 1AIRA 4OZYA 1JRGA 3VMVA 2QX3A 2NZMA 3EQOA 1RWRA 3ZPPA 1IA5A 2BSPA 4XORA 4EW9A 3VSTA 2NT6A 1IDKA 4YZQA 1O8MA 4XOPA 4Z05A 4XKVA 1OGOX 1WMRA 4YZAA 1H80A 1O8LA 2VBMA 4XN0A 1OFMA 4YZXA 2X6YA 1HG8A 1DBGA 1CZFA 1PXZA 2X6WA 4YELA 1KCCA 1IDJA 2PYHA 4OJOA 4XONA 4YZ0A 1OGMX 4XQFA 3GQ8A 1EE6A 4XN3A 1O8DA 4NK6A 1O8IA 4W8QA 1XG2A 2NSPA 5AMVA 1OFLA 2EWEA 3KRGA 3SUCA 3GQAA 2PYGA 1RU4A 3UW0A 5C1CA 4XLFA 1NHCA 2VBEA 3LMWA 1PE9A 1JTAA 4OJ6A 1K5CA 1X0CA 2O04A 4C2LA 3B8YA 4AVZA 4OJ5A 4XLHA 1KCDA 2O17A 4HWVA 2O0VA 4XR6A 2O0WA 4W8SA 1DBOA 2INUA 1QCXA 4XLCA 1O8FA 4XLAA 1BHEA 4MXNA 1VBLA 2QXZA 3GRHA 2NT9A 3VMWA 5C1EA 1O8KA 4W8TA 3B4NA 2X85A 3VSVA 3FY3A 3GQ9A 4NK8A 2VJJA 3ZSCA 2IQ7A 3B90A 1KTWA 1PLUA 3JURA 4XOTA 1BN8A 1O8GA 2NTBA 4U4BA 2X6XA 4XMYA 2Z8GA 4W8RA 3T9GA 1QJVA 2NTPA 4U49A 3GQ7A 4Z03A 4OZZA 1O8JA 3VSUA 4XL9A 3WWGA 2INVA 2ODLA 4XLEA 4Z06A 4MR0A 1RMGA 2NSTA 2QY1A 1GQ8A 4XKWA 4YEJA 1O8HA 2X3HA 1IB4A 4URRA 2O1DA 4PMHA 4OJLA 2UVEA 4XM3A 1OOCA 1O88A 4OJPA 2UVFA 1O8EA 2VBKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PEC A;  4I84 A;  4XNF A;  2NTQ A;  3EQN A;  2VJI A;  1AIR A;  4OZY A;  1JRG A;  3VMV A;  2QX3 A;  2NZM A;  3EQO A;  1RWR A;  3ZPP A;  1IA5 A;  2BSP A;  4XOR A;  4EW9 A;  3VST A;  2NT6 A;  1IDK A;  4YZQ A;  1O8M A;  4XOP A;  4Z05 A;  4XKV A;  1OGO X;  1WMR A;  4YZA A;  1H80 A;  1O8L A;  2VBM A;  4XN0 A;  1OFM A;  4YZX A;  2X6Y A;  1HG8 A;  1DBG A;  1CZF A;  1PXZ A;  2X6W A;  4YEL A;  1KCC A;  1IDJ A;  2PYH A;  4OJO A;  4XON A;  4YZ0 A;  1OGM X;  4XQF A;  3GQ8 A;  1EE6 A;  4XN3 A;  1O8D A;  4NK6 A;  1O8I A;  4W8Q A;  1XG2 A;  2NSP A;  5AMV A;  1OFL A;  2EWE A;  3KRG A;  3SUC A;  3GQA A;  2PYG A;  1RU4 A;  3UW0 A;  5C1C A;  4XLF A;  1NHC A;  2VBE A;  3LMW A;  1PE9 A;  1JTA A;  4OJ6 A;  1K5C A;  1X0C A;  2O04 A;  4C2L A;  3B8Y A;  4AVZ A;  4OJ5 A;  4XLH A;  1KCD A;  2O17 A;  4HWV A;  2O0V A;  4XR6 A;  2O0W A;  4W8S A;  1DBO A;  2INU A;  1QCX A;  4XLC A;  1O8F A;  4XLA A;  1BHE A;  4MXN A;  1VBL A;  2QXZ A;  3GRH A;  2NT9 A;  3VMW A;  5C1E A;  1O8K A;  4W8T A;  3B4N A;  2X85 A;  3VSV A;  3FY3 A;  3GQ9 A;  4NK8 A;  2VJJ A;  3ZSC A;  2IQ7 A;  3B90 A;  1KTW A;  1PLU A;  3JUR A;  4XOT A;  1BN8 A;  1O8G A;  2NTB A;  4U4B A;  2X6X A;  4XMY A;  2Z8G A;  4W8R A;  3T9G A;  1QJV A;  2NTP A;  4U49 A;  3GQ7 A;  4Z03 A;  4OZZ A;  1O8J A;  3VSU A;  4XL9 A;  3WWG A;  2INV A;  2ODL A;  4XLE A;  4Z06 A;  4MR0 A;  1RMG A;  2NST A;  2QY1 A;  1GQ8 A;  4XKW A;  4YEJ A;  1O8H A;  2X3H A;  1IB4 A;  4URR A;  2O1D A;  4PMH A;  4OJL A;  2UVE A;  4XM3 A;  1OOC A;  1O88 A;  4OJP A;  2UVF A;  1O8E A;  2VBK A; 
#chains in the Genus database with same CATH topology
 2PEC A;  2VFN A;  4I84 A;  2QYU A;  4XNF A;  2V5I A;  2NTQ A;  2XTW A;  3EQN A;  2VJI A;  1AIR A;  4OZY A;  1JRG A;  3SY2 A;  2BM6 A;  3VMV A;  2QX3 A;  3H09 A;  1K4Z A;  2NZM A;  2VFM A;  3EQO A;  1RWR A;  3ZPP A;  1IA5 A;  2BSP A;  4XOR A;  4EW9 A;  3VST A;  1TYV A;  2NT6 A;  1IDK A;  4YZQ A;  1O8M A;  4XOP A;  4Z05 A;  4XKV A;  2BM7 A;  1TYU A;  1OGO X;  1TSP A;  3NAW A;  2XC1 A;  3PSS A;  1WXR A;  1WMR A;  4YZA A;  1H80 A;  1O8L A;  2VBM A;  1CLW A;  4XN0 A;  1OFM A;  4YZX A;  2X6Y A;  1HG8 A;  1DBG A;  1CZF A;  1QQ1 A;  1PXZ A;  2X6W A;  4YEL A;  1KCC A;  1LM1 A;  2J8I A;  4YCQ A;  1IDJ A;  1K8F A;  2PYH A;  2VFP A;  4OJO A;  4XON A;  4YZ0 A;  1OGM X;  4XQF A;  3GQ8 A;  3PSZ A;  1EE6 A;  4XN3 A;  3AK5 A;  1O8D A;  4NK6 A;  3DU1 X;  3ML3 A;  1O8I A;  1OFD A;  1QA2 A;  4W8Q A;  1XG2 A;  4OPW A;  2NSP A;  4JRA C;  2W7Z A;  3NB2 A;  2BM5 A;  2J8K A;  5AMV A;  2VBK A;  1OFL A;  2EWE A;  1OFE A;  3KRG A;  2YUH A;  3SUC A;  3GQA A;  2PYG A;  1QA1 A;  1RU4 A;  3UW0 A;  5C1C A;  2BX6 A;  4XLF A;  2BM4 A;  2VBE A;  1NHC A;  3LMW A;  1PE9 A;  1JTA A;  3BH7 B;  4OJ6 A;  1X0C A;  2O04 A;  3TH0 A;  4C2L A;  1K5C A;  3B8Y A;  5DNS A;  4OJ5 A;  4XLH A;  4AVZ A;  2O17 A;  1KCD A;  4HWV A;  2O0V A;  2XT2 A;  1TYX A;  2O0W A;  4W8S A;  1HF2 A;  1DBO A;  2INU A;  1QCX A;  4XR6 A;  3RIQ A;  4YEI A;  1QA3 A;  4XLC A;  3N6Z A;  1O8F A;  2O6W A;  1BHE A;  4XLA A;  1QRB A;  1VBL A;  2QXZ A;  4KH3 A;  4MXN A;  3SQV A;  3GRH A;  5JLV C;  3SZE A;  5JMC B;  2NT9 A;  3VMW A;  4YFO A;  5C1E A;  1O8K A;  1TYW A;  4W8T A;  3B4N A;  2QZA A;  2X85 A;  2XTX A;  3FY3 A;  3GQ9 A;  4NK8 A;  3VSV A;  1EA0 A;  2VJJ A;  4V02 C;  3ZSC A;  2IQ7 A;  3B90 A;  2B0R A;  2XT4 A;  1KTW A;  1PLU A;  3N90 A;  3JUR A;  3LYC A;  4XOT A;  1BN8 A;  1O8G A;  3PET A;  2NTB A;  4U4B A;  2X6X A;  4XMY A;  2Z8G A;  3SYJ A;  4W8R A;  2G0Y A;  3T9G A;  1QJV A;  1LLZ A;  2NTP A;  3GQ7 A;  3P4G A;  4U49 A;  4OZZ A;  4Z03 A;  1L1I A;  4OM9 A;  1O8J A;  2F3L A;  1KQ5 A;  1DAB A;  3VSU A;  4XL9 A;  3WWG A;  2INV A;  2ODL A;  3BH6 B;  4XLE A;  4Z06 A;  1EZG A;  1QRC A;  2VFO A;  2XTY A;  4MR0 A;  1RMG A;  2NST A;  2QY1 A;  3JX8 A;  1GQ8 A;  2IOU G;  4XKW A;  4YEJ A;  2X3H A;  1IB4 A;  4YC5 A;  4URR A;  1LLW A;  2O1D A;  4YDT A;  4PMH A;  4OJL A;  2UVE A;  4XM3 A;  1OOC A;  1O88 A;  4OJP A;  2UVF A;  3LJY A;  1O8E A;  2VFQ A;  1O8H A; 
#chains in the Genus database with same CATH homology
 2PEC A;  4I84 A;  4XNF A;  2NTQ A;  3EQN A;  2VJI A;  1AIR A;  4OZY A;  1JRG A;  3VMV A;  2QX3 A;  2NZM A;  3EQO A;  1RWR A;  3ZPP A;  1IA5 A;  2BSP A;  4XOR A;  4EW9 A;  3VST A;  2NT6 A;  1IDK A;  4YZQ A;  1O8M A;  4XOP A;  4Z05 A;  4XKV A;  1OGO X;  1WMR A;  4YZA A;  1H80 A;  1O8L A;  2VBM A;  4XN0 A;  1OFM A;  4YZX A;  2X6Y A;  1HG8 A;  1DBG A;  1CZF A;  1PXZ A;  2X6W A;  4YEL A;  1KCC A;  1IDJ A;  2PYH A;  4OJO A;  4XON A;  4YZ0 A;  1OGM X;  4XQF A;  3GQ8 A;  1EE6 A;  4XN3 A;  1O8D A;  4NK6 A;  1O8I A;  4W8Q A;  1XG2 A;  2NSP A;  5AMV A;  1OFL A;  2EWE A;  3KRG A;  3SUC A;  3GQA A;  2PYG A;  1RU4 A;  3UW0 A;  5C1C A;  4XLF A;  1NHC A;  2VBE A;  3LMW A;  1PE9 A;  1JTA A;  4OJ6 A;  1K5C A;  1X0C A;  2O04 A;  4C2L A;  3B8Y A;  4AVZ A;  4OJ5 A;  4XLH A;  1KCD A;  2O17 A;  4HWV A;  2O0V A;  4XR6 A;  2O0W A;  4W8S A;  1DBO A;  2INU A;  1QCX A;  4XLC A;  1O8F A;  4XLA A;  1BHE A;  4MXN A;  1VBL A;  2QXZ A;  3GRH A;  2NT9 A;  3VMW A;  5C1E A;  1O8K A;  4W8T A;  3B4N A;  2X85 A;  3VSV A;  3FY3 A;  3GQ9 A;  4NK8 A;  2VJJ A;  3ZSC A;  2IQ7 A;  3B90 A;  1KTW A;  1PLU A;  3JUR A;  4XOT A;  1BN8 A;  1O8G A;  2NTB A;  4U4B A;  2X6X A;  4XMY A;  2Z8G A;  4W8R A;  3T9G A;  1QJV A;  2NTP A;  4U49 A;  3GQ7 A;  4Z03 A;  4OZZ A;  1O8J A;  3VSU A;  4XL9 A;  3WWG A;  2INV A;  2ODL A;  4XLE A;  4Z06 A;  4MR0 A;  1RMG A;  2NST A;  2QY1 A;  1GQ8 A;  4XKW A;  4YEJ A;  1O8H A;  2X3H A;  1IB4 A;  4URR A;  2O1D A;  4PMH A;  4OJL A;  2UVE A;  4XM3 A;  1OOC A;  1O88 A;  4OJP A;  2UVF A;  1O8E A;  2VBK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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