1DBGA

Crystal structure of chondroitinase b
Total Genus 180
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
180
sequence length
481
structure length
481
Chain Sequence
QVVASNETLYQVVKEVKPGGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKDGNRAIQAWKSHGPGLVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPGMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQGTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGSRHVIACNYFELSETIKSRGNAALYLNPGAMASEHALAFDMLIANNAFINVNGYAIHFNPLDERRKEYCAANRLKFETPHQLMLKGNLFFKDKPYVYPFFKDDYFIAGKNSWTGNVALGVEKGIPVNISANRSAYKPVKIKDIQPIEGIALDLNALISKGITGKPLSWDEVRPYWLKEMPGTYALTARLSADRAAKFKAVIKRNKEH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
molecule keywords CHONDROITINASE B
publication title Crystal structure of chondroitinase B from Flavobacterium heparinum and its complex with a disaccharide product at 1.7 A resolution.
pubmed doi rcsb
total genus 180
structure length 481
sequence length 481
ec nomenclature ec 4.2.2.19: Chondroitin B lyase.
pdb deposition date 1999-11-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14592 Chondroitinas_B Chondroitinase B
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1dbgA00
4HWVA 1RWRA 4Z03A 4C2LA 4XQFA 1IDKA 1O8JA 4OJLA 2QXZA 1IA5A 1JRGA 2NT9A 1DBGA 2UVFA 2QY1A 1O8HA 2X6XA 2NSPA 1BN8A 1IB4A 4XONA 2O0WA 4OJOA 4XORA 4XLAA 4XKVA 3SUCA 2X6YA 4U49A 2VJJA 1O88A 3LMWA 4XLFA 4OJ5A 2Z8GA 3GRHA 4EW9A 2VJIA 4XNFA 4W8QA 2BSPA 2NTQA 3GQAA 4I84A 2NTBA 4URRA 4PMHA 3ZSCA 3GQ7A 4XL9A 4YELA 1K5CA 1DBOA 2NT6A 3FY3A 2X85A 3VSUA 1PXZA 1KTWA 2PYHA 1OFLA 4XM3A 1XG2A 4W8SA 4OJ6A 5C1CA 4YZQA 3VSVA 4XR6A 4AVZA 1X0CA 4NK8A 2VBKA 2PECA 1O8DA 3B4NA 2NZMA 2X3HA 2O1DA 4NK6A 4YZAA 3GQ9A 1H80A 4XLEA 1O8LA 1IDJA 4W8TA 2VBMA 4XLHA 4OZYA 4W8RA 4XMYA 3VSTA 1AIRA 1OOCA 1RU4A 1O8EA 3ZPPA 2ODLA 2UVEA 1O8MA 2VBEA 1EE6A 1QJVA 1OGOX 2PYGA 3B8YA 3VMVA 4Z06A 4YZ0A 3WWGA 2NTPA 4YZXA 2O04A 1O8GA 1O8IA 5AMVA 3EQNA 4Z05A 3VMWA 1BHEA 3B90A 3T9GA 4XN0A 1OFMA 3EQOA 1RMGA 1PLUA 1OGMX 3UW0A 4XOPA 2X6WA 1NHCA 4MR0A 1KCCA 4MXNA 2O17A 4XOTA 1CZFA 1O8KA 3GQ8A 1VBLA 5C1EA 4U4BA 1WMRA 1JTAA 4YEJA 2INUA 2O0VA 2IQ7A 4OJPA 1HG8A 3KRGA 2EWEA 4OZZA 2QX3A 1GQ8A 2INVA 4XN3A 1O8FA 4XKWA 3JURA 1QCXA 1KCDA 1PE9A 2NSTA 4XLCA
chains in the Genus database with same CATH superfamily
1QA3A 4HWVA 2F3LA 1RWRA 1LLZA 4Z03A 4C2LA 4XQFA 1IDKA 1O8JA 4OJLA 2QXZA 1IA5A 1JRGA 2NT9A 1DBGA 1OFEA 2UVFA 2QY1A 3SZEA 1QA2A 1OFDA 1O8HA 1WXRA 4OPWA 2BM5A 2X6XA 2VFQA 2NSPA 2VFOA 1BN8A 1IB4A 4XONA 3RIQA 1LLWA 2O0WA 4OJOA 4XORA 4XLAA 4XKVA 3SUCA 2X6YA 4U49A 2VJJA 2J8KA 1O88A 3LMWA 4XLFA 1QA1A 4OJ5A 2Z8GA 3GRHA 4EW9A 2VJIA 4XNFA 4YFOA 1TYXA 4W8QA 3TH0A 2BSPA 2NTQA 3GQAA 2BM7A 4I84A 2NTBA 3PSSA 2QYUA 4URRA 4PMHA 2BM4A 2XT4A 3ZSCA 1TYUA 3GQ7A 1QQ1A 4XL9A 2G0YA 4YELA 1K5CA 1DBOA 3LJYA 2W7ZA 2NT6A 3FY3A 1QRBA 1TSPA 2X85A 4YCQA 3VSUA 2QZAA 2VFMA 4JRAC 4YC5A 1PXZA 3H09A 1KTWA 1TYWA 2PYHA 1OFLA 4XM3A 3P4GA 1XG2A 4W8SA 4OJ6A 5C1CA 1L1IA 4YZQA 3VSVA 3SY2A 3BH7B 4XR6A 4YDTA 1LM1A 4AVZA 1X0CA 3PETA 2VBKA 4NK8A 2PECA 3AK5A 1O8DA 3B4NA 2NZMA 2X3HA 2O1DA 4NK6A 4YZAA 3GQ9A 1H80A 2V5IA 4XLEA 1O8LA 1IDJA 4W8TA 2VBMA 4XLHA 3LYCA 1HF2A 4OZYA 4W8RA 4XMYA 3N90A 3VSTA 1AIRA 1OOCA 3PSZA 1RU4A 1O8EA 3ZPPA 2ODLA 2UVEA 1O8MA 2VBEA 1K4ZA 1EE6A 1QJVA 2XTWA 1OGOX 2PYGA 3B8YA 1K8FA 2BM6A 2IOUG 3VMVA 4OM9A 4Z06A 3SQVA 4YEIA 3ML3A 3NB2A 4YZ0A 3SYJA 3WWGA 1QRCA 2NTPA 4YZXA 2XT2A 1EZGA 2O04A 1O8GA 1O8IA 1CLWA 2XTXA 3EQNA 4Z05A 1BHEA 5AMVA 3VMWA 2XTYA 3B90A 3T9GA 4XN0A 1OFMA 2J8IA 1RMGA 3EQOA 1PLUA 1TYVA 3UW0A 4XOPA 2X6WA 1NHCA 4MR0A 1KCCA 4MXNA 2O17A 2NSTA 2YUHA 4XOTA 1CZFA 2XC1A 1O8KA 3GQ8A 2VFNA 1VBLA 5C1EA 3N6ZA 2BX6A 4U4BA 1WMRA 1JTAA 4V02C 4YEJA 4KH3A 5JMCB 2INUA 2O0VA 5JLVC 2IQ7A 3DU1X 4OJPA 1HG8A 1DABA 3KRGA 2EWEA 2O6WA 4OZZA 1EA0A 1KQ5A 2QX3A 1GQ8A 2INVA 3BH6B 4XN3A 1O8FA 4XKWA 3JURA 3NAWA 2B0RA 2VFPA 3JX8A 1QCXA 5DNSA 1KCDA 1PE9A 1OGMX 4XLCA
chains in the Genus database with same CATH topology
4HWVA 1RWRA 4Z03A 4C2LA 4XQFA 1IDKA 1O8JA 4OJLA 2QXZA 1IA5A 1JRGA 2NT9A 1DBGA 2UVFA 2QY1A 1O8HA 2X6XA 2NSPA 1BN8A 1IB4A 4XONA 2O0WA 4OJOA 4XORA 4XLAA 4XKVA 3SUCA 2X6YA 4U49A 2VJJA 1O88A 3LMWA 4XLFA 4OJ5A 2Z8GA 3GRHA 4EW9A 2VJIA 4XNFA 4W8QA 2BSPA 2NTQA 3GQAA 4I84A 2NTBA 4URRA 4PMHA 3ZSCA 3GQ7A 4XL9A 4YELA 1K5CA 1DBOA 2NT6A 3FY3A 2X85A 3VSUA 1PXZA 1KTWA 2PYHA 1OFLA 4XM3A 1XG2A 4W8SA 4OJ6A 5C1CA 4YZQA 3VSVA 4XR6A 4AVZA 1X0CA 4NK8A 2VBKA 2PECA 1O8DA 3B4NA 2NZMA 2X3HA 2O1DA 4NK6A 4YZAA 3GQ9A 1H80A 4XLEA 1O8LA 1IDJA 4W8TA 2VBMA 4XLHA 4OZYA 4W8RA 4XMYA 3VSTA 1AIRA 1OOCA 1RU4A 1O8EA 3ZPPA 2ODLA 2UVEA 1O8MA 2VBEA 1EE6A 1QJVA 1OGOX 2PYGA 3B8YA 3VMVA 4Z06A 4YZ0A 3WWGA 2NTPA 4YZXA 2O04A 1O8GA 1O8IA 5AMVA 3EQNA 4Z05A 3VMWA 1BHEA 3B90A 3T9GA 4XN0A 1OFMA 3EQOA 1RMGA 1PLUA 1OGMX 3UW0A 4XOPA 2X6WA 1NHCA 4MR0A 1KCCA 4MXNA 2O17A 4XOTA 1CZFA 1O8KA 3GQ8A 1VBLA 5C1EA 4U4BA 1WMRA 1JTAA 4YEJA 2INUA 2O0VA 2IQ7A 4OJPA 1HG8A 3KRGA 2EWEA 4OZZA 2QX3A 1GQ8A 2INVA 4XN3A 1O8FA 4XKWA 3JURA 1QCXA 1KCDA 1PE9A 2NSTA 4XLCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HWV A;  1RWR A;  4Z03 A;  4C2L A;  4XQF A;  1IDK A;  1O8J A;  4OJL A;  2QXZ A;  1IA5 A;  1JRG A;  2NT9 A;  1DBG A;  2UVF A;  2QY1 A;  1O8H A;  2X6X A;  2NSP A;  1BN8 A;  1IB4 A;  4XON A;  2O0W A;  4OJO A;  4XOR A;  4XLA A;  4XKV A;  3SUC A;  2X6Y A;  4U49 A;  2VJJ A;  1O88 A;  3LMW A;  4XLF A;  4OJ5 A;  2Z8G A;  3GRH A;  4EW9 A;  2VJI A;  4XNF A;  4W8Q A;  2BSP A;  2NTQ A;  3GQA A;  4I84 A;  2NTB A;  4URR A;  4PMH A;  3ZSC A;  3GQ7 A;  4XL9 A;  4YEL A;  1K5C A;  1DBO A;  2NT6 A;  3FY3 A;  2X85 A;  3VSU A;  1PXZ A;  1KTW A;  2PYH A;  1OFL A;  4XM3 A;  1XG2 A;  4W8S A;  4OJ6 A;  5C1C A;  4YZQ A;  3VSV A;  4XR6 A;  4AVZ A;  1X0C A;  4NK8 A;  2VBK A;  2PEC A;  1O8D A;  3B4N A;  2NZM A;  2X3H A;  2O1D A;  4NK6 A;  4YZA A;  3GQ9 A;  1H80 A;  4XLE A;  1O8L A;  1IDJ A;  4W8T A;  2VBM A;  4XLH A;  4OZY A;  4W8R A;  4XMY A;  3VST A;  1AIR A;  1OOC A;  1RU4 A;  1O8E A;  3ZPP A;  2ODL A;  2UVE A;  1O8M A;  2VBE A;  1EE6 A;  1QJV A;  1OGO X;  2PYG A;  3B8Y A;  3VMV A;  4Z06 A;  4YZ0 A;  3WWG A;  2NTP A;  4YZX A;  2O04 A;  1O8G A;  1O8I A;  5AMV A;  3EQN A;  4Z05 A;  3VMW A;  1BHE A;  3B90 A;  3T9G A;  4XN0 A;  1OFM A;  3EQO A;  1RMG A;  1PLU A;  1OGM X;  3UW0 A;  4XOP A;  2X6W A;  1NHC A;  4MR0 A;  1KCC A;  4MXN A;  2O17 A;  4XOT A;  1CZF A;  1O8K A;  3GQ8 A;  1VBL A;  5C1E A;  4U4B A;  1WMR A;  1JTA A;  4YEJ A;  2INU A;  2O0V A;  2IQ7 A;  4OJP A;  1HG8 A;  3KRG A;  2EWE A;  4OZZ A;  2QX3 A;  1GQ8 A;  2INV A;  4XN3 A;  1O8F A;  4XKW A;  3JUR A;  1QCX A;  1KCD A;  1PE9 A;  2NST A;  4XLC A; 
#chains in the Genus database with same CATH topology
 1QA3 A;  4HWV A;  2F3L A;  1RWR A;  1LLZ A;  4Z03 A;  4C2L A;  4XQF A;  1IDK A;  1O8J A;  4OJL A;  2QXZ A;  1IA5 A;  1JRG A;  2NT9 A;  1DBG A;  1OFE A;  2UVF A;  2QY1 A;  3SZE A;  1QA2 A;  1OFD A;  1O8H A;  1WXR A;  4OPW A;  2BM5 A;  2X6X A;  2VFQ A;  2NSP A;  2VFO A;  1BN8 A;  1IB4 A;  4XON A;  3RIQ A;  1LLW A;  2O0W A;  4OJO A;  4XOR A;  4XLA A;  4XKV A;  3SUC A;  2X6Y A;  4U49 A;  2VJJ A;  2J8K A;  1O88 A;  3LMW A;  4XLF A;  1QA1 A;  4OJ5 A;  2Z8G A;  3GRH A;  4EW9 A;  2VJI A;  4XNF A;  4YFO A;  1TYX A;  4W8Q A;  3TH0 A;  2BSP A;  2NTQ A;  3GQA A;  2BM7 A;  4I84 A;  2NTB A;  3PSS A;  2QYU A;  4URR A;  4PMH A;  2BM4 A;  2XT4 A;  3ZSC A;  1TYU A;  3GQ7 A;  1QQ1 A;  4XL9 A;  2G0Y A;  4YEL A;  1K5C A;  1DBO A;  3LJY A;  2W7Z A;  2NT6 A;  3FY3 A;  1QRB A;  1TSP A;  2X85 A;  4YCQ A;  3VSU A;  2QZA A;  2VFM A;  4JRA C;  4YC5 A;  1PXZ A;  3H09 A;  1KTW A;  1TYW A;  2PYH A;  1OFL A;  4XM3 A;  3P4G A;  1XG2 A;  4W8S A;  4OJ6 A;  5C1C A;  1L1I A;  4YZQ A;  3VSV A;  3SY2 A;  3BH7 B;  4XR6 A;  4YDT A;  1LM1 A;  4AVZ A;  1X0C A;  3PET A;  2VBK A;  4NK8 A;  2PEC A;  3AK5 A;  1O8D A;  3B4N A;  2NZM A;  2X3H A;  2O1D A;  4NK6 A;  4YZA A;  3GQ9 A;  1H80 A;  2V5I A;  4XLE A;  1O8L A;  1IDJ A;  4W8T A;  2VBM A;  4XLH A;  3LYC A;  1HF2 A;  4OZY A;  4W8R A;  4XMY A;  3N90 A;  3VST A;  1AIR A;  1OOC A;  3PSZ A;  1RU4 A;  1O8E A;  3ZPP A;  2ODL A;  2UVE A;  1O8M A;  2VBE A;  1K4Z A;  1EE6 A;  1QJV A;  2XTW A;  1OGO X;  2PYG A;  3B8Y A;  1K8F A;  2BM6 A;  2IOU G;  3VMV A;  4OM9 A;  4Z06 A;  3SQV A;  4YEI A;  3ML3 A;  3NB2 A;  4YZ0 A;  3SYJ A;  3WWG A;  1QRC A;  2NTP A;  4YZX A;  2XT2 A;  1EZG A;  2O04 A;  1O8G A;  1O8I A;  1CLW A;  2XTX A;  3EQN A;  4Z05 A;  1BHE A;  5AMV A;  3VMW A;  2XTY A;  3B90 A;  3T9G A;  4XN0 A;  1OFM A;  2J8I A;  1RMG A;  3EQO A;  1PLU A;  1TYV A;  3UW0 A;  4XOP A;  2X6W A;  1NHC A;  4MR0 A;  1KCC A;  4MXN A;  2O17 A;  2NST A;  2YUH A;  4XOT A;  1CZF A;  2XC1 A;  1O8K A;  3GQ8 A;  2VFN A;  1VBL A;  5C1E A;  3N6Z A;  2BX6 A;  4U4B A;  1WMR A;  1JTA A;  4V02 C;  4YEJ A;  4KH3 A;  5JMC B;  2INU A;  2O0V A;  5JLV C;  2IQ7 A;  3DU1 X;  4OJP A;  1HG8 A;  1DAB A;  3KRG A;  2EWE A;  2O6W A;  4OZZ A;  1EA0 A;  1KQ5 A;  2QX3 A;  1GQ8 A;  2INV A;  3BH6 B;  4XN3 A;  1O8F A;  4XKW A;  3JUR A;  3NAW A;  2B0R A;  2VFP A;  3JX8 A;  1QCX A;  5DNS A;  1KCD A;  1PE9 A;  1OGM X;  4XLC A; 
#chains in the Genus database with same CATH homology
 4HWV A;  1RWR A;  4Z03 A;  4C2L A;  4XQF A;  1IDK A;  1O8J A;  4OJL A;  2QXZ A;  1IA5 A;  1JRG A;  2NT9 A;  1DBG A;  2UVF A;  2QY1 A;  1O8H A;  2X6X A;  2NSP A;  1BN8 A;  1IB4 A;  4XON A;  2O0W A;  4OJO A;  4XOR A;  4XLA A;  4XKV A;  3SUC A;  2X6Y A;  4U49 A;  2VJJ A;  1O88 A;  3LMW A;  4XLF A;  4OJ5 A;  2Z8G A;  3GRH A;  4EW9 A;  2VJI A;  4XNF A;  4W8Q A;  2BSP A;  2NTQ A;  3GQA A;  4I84 A;  2NTB A;  4URR A;  4PMH A;  3ZSC A;  3GQ7 A;  4XL9 A;  4YEL A;  1K5C A;  1DBO A;  2NT6 A;  3FY3 A;  2X85 A;  3VSU A;  1PXZ A;  1KTW A;  2PYH A;  1OFL A;  4XM3 A;  1XG2 A;  4W8S A;  4OJ6 A;  5C1C A;  4YZQ A;  3VSV A;  4XR6 A;  4AVZ A;  1X0C A;  4NK8 A;  2VBK A;  2PEC A;  1O8D A;  3B4N A;  2NZM A;  2X3H A;  2O1D A;  4NK6 A;  4YZA A;  3GQ9 A;  1H80 A;  4XLE A;  1O8L A;  1IDJ A;  4W8T A;  2VBM A;  4XLH A;  4OZY A;  4W8R A;  4XMY A;  3VST A;  1AIR A;  1OOC A;  1RU4 A;  1O8E A;  3ZPP A;  2ODL A;  2UVE A;  1O8M A;  2VBE A;  1EE6 A;  1QJV A;  1OGO X;  2PYG A;  3B8Y A;  3VMV A;  4Z06 A;  4YZ0 A;  3WWG A;  2NTP A;  4YZX A;  2O04 A;  1O8G A;  1O8I A;  5AMV A;  3EQN A;  4Z05 A;  3VMW A;  1BHE A;  3B90 A;  3T9G A;  4XN0 A;  1OFM A;  3EQO A;  1RMG A;  1PLU A;  1OGM X;  3UW0 A;  4XOP A;  2X6W A;  1NHC A;  4MR0 A;  1KCC A;  4MXN A;  2O17 A;  4XOT A;  1CZF A;  1O8K A;  3GQ8 A;  1VBL A;  5C1E A;  4U4B A;  1WMR A;  1JTA A;  4YEJ A;  2INU A;  2O0V A;  2IQ7 A;  4OJP A;  1HG8 A;  3KRG A;  2EWE A;  4OZZ A;  2QX3 A;  1GQ8 A;  2INV A;  4XN3 A;  1O8F A;  4XKW A;  3JUR A;  1QCX A;  1KCD A;  1PE9 A;  2NST A;  4XLC A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...