2O0VA

Pectate lyase bound to hexasaccharide compound iii
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
molecule keywords Pectate lyase
publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
pubmed doi rcsb
source organism Bacillus subtilis
total genus 158
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2o0vA00
2VBMA 2INUA 4NK6A 1WMRA 1IDJA 2VBEA 3T9GA 1H80A 4XR6A 2PYGA 1OGOX 3B4NA 2NZMA 3GQAA 2O0WA 1EE6A 4U4BA 4XMYA 1RU4A 1O8MA 3VSVA 1VBLA 4XORA 2X3HA 4YZ0A 2PECA 2VJJA 2INVA 4YEJA 3ZPPA 2UVFA 2NSPA 3JURA 4XLHA 1X0CA 1O8LA 1O8DA 4XLFA 2NTBA 2NTQA 4OJOA 1JTAA 2O04A 2X6XA 4NK8A 1NHCA 5C1CA 4XN0A 3LMWA 4XLAA 2BSPA 1RWRA 3GQ9A 1IB4A 2X85A 4XKVA 3EQOA 3B90A 2O1DA 2PYHA 4YZXA 2VBKA 3VMVA 3VSUA 3SUCA 3EQNA 4OZZA 2NSTA 1AIRA 1IA5A 4XONA 1KCDA 4OJPA 3FY3A 4W8SA 3GRHA 4W8RA 4XNFA 4U49A 3KRGA 3VSTA 4OJLA 4XLEA 1OFMA 4MXNA 2QX3A 4OJ5A 4Z05A 4XN3A 1PLUA 1O8FA 2NT6A 1O8HA 2UVEA 1KTWA 1RMGA 4YZAA 4EW9A 1CZFA 1O8EA 1OGMX 2IQ7A 1DBGA 2Z8GA 4YELA 2O17A 1PE9A 1PXZA 2QY1A 4I84A 4XQFA 4XOTA 2O0VA 1O88A 4AVZA 4PMHA 4YZQA 4MR0A 1KCCA 4Z06A 2EWEA 3WWGA 3VMWA 2QXZA 4URRA 1QCXA 1O8GA 1BHEA 2X6YA 5AMVA 5C1EA 2NTPA 1XG2A 4XOPA 3ZSCA 4C2LA 4XKWA 4Z03A 1OOCA 3B8YA 3UW0A 1JRGA 2X6WA 1IDKA 1OFLA 4OZYA 3GQ7A 1K5CA 1O8JA 1O8IA 1BN8A 4XM3A 4W8TA 3GQ8A 1DBOA 4W8QA 4HWVA 4OJ6A 1O8KA 1GQ8A 1QJVA 1HG8A 4XLCA 4XL9A 2ODLA 2VJIA 2NT9A
chains in the Genus database with same CATH superfamily
2VBMA 2INUA 4NK6A 1WMRA 1IDJA 2V5IA 2VBEA 2XT4A 1H80A 4XR6A 4YFOA 3T9GA 1QQ1A 3NAWA 2PYGA 1OGOX 2VFPA 3B4NA 2NZMA 1OFEA 3GQAA 2O0WA 1QA2A 3NB2A 1K4ZA 3N6ZA 1EE6A 2BM4A 4U4BA 4XMYA 3AK5A 1OFDA 1RU4A 1O8MA 3VSVA 1VBLA 4XORA 2X3HA 4YZ0A 2PECA 2B0RA 2VJJA 2INVA 2XTYA 4YEJA 3ZPPA 2UVFA 1TYVA 2NSPA 3JURA 2BM7A 2VFOA 1X0CA 3BH7B 4XLHA 1O8LA 4OPWA 1O8DA 4XLFA 2F3LA 2NTBA 2W7ZA 3BH6B 3N90A 2NTQA 4OJOA 1JTAA 2O04A 2X6XA 4NK8A 1NHCA 5C1CA 1EA0A 4XN0A 3LMWA 4XLAA 2BSPA 1RWRA 3GQ9A 2QZAA 1IB4A 2X85A 4XKVA 5DNSA 3EQOA 1DABA 3B90A 2IOUG 2O1DA 2PYHA 4YZXA 2VBKA 3VMVA 3VSUA 1KQ5A 3SUCA 2XT2A 3EQNA 3PSSA 4OZZA 2NSTA 1AIRA 4V02C 4YEIA 1IA5A 3TH0A 1TYWA 4XONA 3LYCA 1WXRA 1TSPA 1KCDA 4OJPA 3FY3A 4W8SA 3GRHA 1CLWA 4W8RA 3LJYA 4XNFA 2G0YA 1TYUA 4OM9A 3RIQA 3SY2A 2O6WA 4U49A 3KRGA 3VSTA 1EZGA 4OJLA 4XLEA 1OFMA 3SYJA 4MXNA 2QX3A 4OJ5A 1LM1A 4Z05A 2QYUA 4XN3A 1PLUA 3DU1X 1O8FA 1LLZA 2NT6A 1O8HA 2UVEA 1KTWA 1RMGA 2J8KA 2XTWA 2BM6A 4YZAA 4EW9A 1CZFA 1HF2A 1O8EA 1OGMX 2IQ7A 3H09A 4YCQA 1DBGA 2Z8GA 2XTXA 4YELA 2O17A 1K8FA 1PE9A 1PXZA 2QY1A 4I84A 4XQFA 4XOTA 2O0VA 3ML3A 1O88A 4AVZA 4PMHA 2VFMA 4YZQA 4MR0A 2J8IA 1KCCA 4Z06A 5JMCB 2VFQA 2EWEA 2YUHA 4KH3A 3WWGA 3VMWA 2QXZA 4URRA 1QCXA 4JRAC 1QRBA 1O8GA 1BHEA 2X6YA 4YDTA 5AMVA 2NTPA 1XG2A 4XOPA 5C1EA 3ZSCA 1QRCA 4C2LA 1QA1A 4XKWA 1L1IA 4Z03A 1OOCA 3B8YA 3UW0A 1QA3A 1JRGA 2X6WA 3JX8A 1IDKA 1OFLA 4OZYA 3GQ7A 3SZEA 1K5CA 1O8JA 1BN8A 1O8IA 2BM5A 4XM3A 4W8TA 3PETA 3GQ8A 1DBOA 1TYXA 4W8QA 2BX6A 4HWVA 2XC1A 4OJ6A 1O8KA 1GQ8A 2VFNA 1QJVA 3P4GA 3PSZA 4YC5A 1HG8A 1LLWA 4XLCA 4XL9A 2ODLA 3SQVA 2VJIA 2NT9A 5JLVC
chains in the Genus database with same CATH topology
2VBMA 2INUA 4NK6A 1WMRA 1IDJA 2VBEA 3T9GA 1H80A 4XR6A 2PYGA 1OGOX 3B4NA 2NZMA 3GQAA 2O0WA 1EE6A 4U4BA 4XMYA 1RU4A 1O8MA 3VSVA 1VBLA 4XORA 2X3HA 4YZ0A 2PECA 2VJJA 2INVA 4YEJA 3ZPPA 2UVFA 2NSPA 3JURA 4XLHA 1X0CA 1O8LA 1O8DA 4XLFA 2NTBA 2NTQA 4OJOA 1JTAA 2O04A 2X6XA 4NK8A 1NHCA 5C1CA 4XN0A 3LMWA 4XLAA 2BSPA 1RWRA 3GQ9A 1IB4A 2X85A 4XKVA 3EQOA 3B90A 2O1DA 2PYHA 4YZXA 2VBKA 3VMVA 3VSUA 3SUCA 3EQNA 4OZZA 2NSTA 1AIRA 1IA5A 4XONA 1KCDA 4OJPA 3FY3A 4W8SA 3GRHA 4W8RA 4XNFA 4U49A 3KRGA 3VSTA 4OJLA 4XLEA 1OFMA 4MXNA 2QX3A 4OJ5A 4Z05A 4XN3A 1PLUA 1O8FA 2NT6A 1O8HA 2UVEA 1KTWA 1RMGA 4YZAA 4EW9A 1CZFA 1O8EA 1OGMX 2IQ7A 1DBGA 2Z8GA 4YELA 2O17A 1PE9A 1PXZA 2QY1A 4I84A 4XQFA 4XOTA 2O0VA 1O88A 4AVZA 4PMHA 4YZQA 4MR0A 1KCCA 4Z06A 2EWEA 3WWGA 3VMWA 2QXZA 4URRA 1QCXA 1O8GA 1BHEA 2X6YA 5AMVA 5C1EA 2NTPA 1XG2A 4XOPA 3ZSCA 4C2LA 4XKWA 4Z03A 1OOCA 3B8YA 3UW0A 1JRGA 2X6WA 1IDKA 1OFLA 4OZYA 3GQ7A 1K5CA 1O8JA 1O8IA 1BN8A 4XM3A 4W8TA 3GQ8A 1DBOA 4W8QA 4HWVA 4OJ6A 1O8KA 1GQ8A 1QJVA 1HG8A 4XLCA 4XL9A 2ODLA 2VJIA 2NT9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VBM A;  2INU A;  4NK6 A;  1WMR A;  1IDJ A;  2VBE A;  3T9G A;  1H80 A;  4XR6 A;  2PYG A;  1OGO X;  3B4N A;  2NZM A;  3GQA A;  2O0W A;  1EE6 A;  4U4B A;  4XMY A;  1RU4 A;  1O8M A;  3VSV A;  1VBL A;  4XOR A;  2X3H A;  4YZ0 A;  2PEC A;  2VJJ A;  2INV A;  4YEJ A;  3ZPP A;  2UVF A;  2NSP A;  3JUR A;  4XLH A;  1X0C A;  1O8L A;  1O8D A;  4XLF A;  2NTB A;  2NTQ A;  4OJO A;  1JTA A;  2O04 A;  2X6X A;  4NK8 A;  1NHC A;  5C1C A;  4XN0 A;  3LMW A;  4XLA A;  2BSP A;  1RWR A;  3GQ9 A;  1IB4 A;  2X85 A;  4XKV A;  3EQO A;  3B90 A;  2O1D A;  2PYH A;  4YZX A;  2VBK A;  3VMV A;  3VSU A;  3SUC A;  3EQN A;  4OZZ A;  2NST A;  1AIR A;  1IA5 A;  4XON A;  1KCD A;  4OJP A;  3FY3 A;  4W8S A;  3GRH A;  4W8R A;  4XNF A;  4U49 A;  3KRG A;  3VST A;  4OJL A;  4XLE A;  1OFM A;  4MXN A;  2QX3 A;  4OJ5 A;  4Z05 A;  4XN3 A;  1PLU A;  1O8F A;  2NT6 A;  1O8H A;  2UVE A;  1KTW A;  1RMG A;  4YZA A;  4EW9 A;  1CZF A;  1O8E A;  1OGM X;  2IQ7 A;  1DBG A;  2Z8G A;  4YEL A;  2O17 A;  1PE9 A;  1PXZ A;  2QY1 A;  4I84 A;  4XQF A;  4XOT A;  2O0V A;  1O88 A;  4AVZ A;  4PMH A;  4YZQ A;  4MR0 A;  1KCC A;  4Z06 A;  2EWE A;  3WWG A;  3VMW A;  2QXZ A;  4URR A;  1QCX A;  1O8G A;  1BHE A;  2X6Y A;  5AMV A;  5C1E A;  2NTP A;  1XG2 A;  4XOP A;  3ZSC A;  4C2L A;  4XKW A;  4Z03 A;  1OOC A;  3B8Y A;  3UW0 A;  1JRG A;  2X6W A;  1IDK A;  1OFL A;  4OZY A;  3GQ7 A;  1K5C A;  1O8J A;  1O8I A;  1BN8 A;  4XM3 A;  4W8T A;  3GQ8 A;  1DBO A;  4W8Q A;  4HWV A;  4OJ6 A;  1O8K A;  1GQ8 A;  1QJV A;  1HG8 A;  4XLC A;  4XL9 A;  2ODL A;  2VJI A;  2NT9 A; 
#chains in the Genus database with same CATH topology
 2VBM A;  2INU A;  4NK6 A;  1WMR A;  1IDJ A;  2V5I A;  2VBE A;  2XT4 A;  1H80 A;  4XR6 A;  4YFO A;  3T9G A;  1QQ1 A;  3NAW A;  2PYG A;  1OGO X;  2VFP A;  3B4N A;  2NZM A;  1OFE A;  3GQA A;  2O0W A;  1QA2 A;  3NB2 A;  1K4Z A;  3N6Z A;  1EE6 A;  2BM4 A;  4U4B A;  4XMY A;  3AK5 A;  1OFD A;  1RU4 A;  1O8M A;  3VSV A;  1VBL A;  4XOR A;  2X3H A;  4YZ0 A;  2PEC A;  2B0R A;  2VJJ A;  2INV A;  2XTY A;  4YEJ A;  3ZPP A;  2UVF A;  1TYV A;  2NSP A;  3JUR A;  2BM7 A;  2VFO A;  1X0C A;  3BH7 B;  4XLH A;  1O8L A;  4OPW A;  1O8D A;  4XLF A;  2F3L A;  2NTB A;  2W7Z A;  3BH6 B;  3N90 A;  2NTQ A;  4OJO A;  1JTA A;  2O04 A;  2X6X A;  4NK8 A;  1NHC A;  5C1C A;  1EA0 A;  4XN0 A;  3LMW A;  4XLA A;  2BSP A;  1RWR A;  3GQ9 A;  2QZA A;  1IB4 A;  2X85 A;  4XKV A;  5DNS A;  3EQO A;  1DAB A;  3B90 A;  2IOU G;  2O1D A;  2PYH A;  4YZX A;  2VBK A;  3VMV A;  3VSU A;  1KQ5 A;  3SUC A;  2XT2 A;  3EQN A;  3PSS A;  4OZZ A;  2NST A;  1AIR A;  4V02 C;  4YEI A;  1IA5 A;  3TH0 A;  1TYW A;  4XON A;  3LYC A;  1WXR A;  1TSP A;  1KCD A;  4OJP A;  3FY3 A;  4W8S A;  3GRH A;  1CLW A;  4W8R A;  3LJY A;  4XNF A;  2G0Y A;  1TYU A;  4OM9 A;  3RIQ A;  3SY2 A;  2O6W A;  4U49 A;  3KRG A;  3VST A;  1EZG A;  4OJL A;  4XLE A;  1OFM A;  3SYJ A;  4MXN A;  2QX3 A;  4OJ5 A;  1LM1 A;  4Z05 A;  2QYU A;  4XN3 A;  1PLU A;  3DU1 X;  1O8F A;  1LLZ A;  2NT6 A;  1O8H A;  2UVE A;  1KTW A;  1RMG A;  2J8K A;  2XTW A;  2BM6 A;  4YZA A;  4EW9 A;  1CZF A;  1HF2 A;  1O8E A;  1OGM X;  2IQ7 A;  3H09 A;  4YCQ A;  1DBG A;  2Z8G A;  2XTX A;  4YEL A;  2O17 A;  1K8F A;  1PE9 A;  1PXZ A;  2QY1 A;  4I84 A;  4XQF A;  4XOT A;  2O0V A;  3ML3 A;  1O88 A;  4AVZ A;  4PMH A;  2VFM A;  4YZQ A;  4MR0 A;  2J8I A;  1KCC A;  4Z06 A;  5JMC B;  2VFQ A;  2EWE A;  2YUH A;  4KH3 A;  3WWG A;  3VMW A;  2QXZ A;  4URR A;  1QCX A;  4JRA C;  1QRB A;  1O8G A;  1BHE A;  2X6Y A;  4YDT A;  5AMV A;  2NTP A;  1XG2 A;  4XOP A;  5C1E A;  3ZSC A;  1QRC A;  4C2L A;  1QA1 A;  4XKW A;  1L1I A;  4Z03 A;  1OOC A;  3B8Y A;  3UW0 A;  1QA3 A;  1JRG A;  2X6W A;  3JX8 A;  1IDK A;  1OFL A;  4OZY A;  3GQ7 A;  3SZE A;  1K5C A;  1O8J A;  1BN8 A;  1O8I A;  2BM5 A;  4XM3 A;  4W8T A;  3PET A;  3GQ8 A;  1DBO A;  1TYX A;  4W8Q A;  2BX6 A;  4HWV A;  2XC1 A;  4OJ6 A;  1O8K A;  1GQ8 A;  2VFN A;  1QJV A;  3P4G A;  3PSZ A;  4YC5 A;  1HG8 A;  1LLW A;  4XLC A;  4XL9 A;  2ODL A;  3SQV A;  2VJI A;  2NT9 A;  5JLV C; 
#chains in the Genus database with same CATH homology
 2VBM A;  2INU A;  4NK6 A;  1WMR A;  1IDJ A;  2VBE A;  3T9G A;  1H80 A;  4XR6 A;  2PYG A;  1OGO X;  3B4N A;  2NZM A;  3GQA A;  2O0W A;  1EE6 A;  4U4B A;  4XMY A;  1RU4 A;  1O8M A;  3VSV A;  1VBL A;  4XOR A;  2X3H A;  4YZ0 A;  2PEC A;  2VJJ A;  2INV A;  4YEJ A;  3ZPP A;  2UVF A;  2NSP A;  3JUR A;  4XLH A;  1X0C A;  1O8L A;  1O8D A;  4XLF A;  2NTB A;  2NTQ A;  4OJO A;  1JTA A;  2O04 A;  2X6X A;  4NK8 A;  1NHC A;  5C1C A;  4XN0 A;  3LMW A;  4XLA A;  2BSP A;  1RWR A;  3GQ9 A;  1IB4 A;  2X85 A;  4XKV A;  3EQO A;  3B90 A;  2O1D A;  2PYH A;  4YZX A;  2VBK A;  3VMV A;  3VSU A;  3SUC A;  3EQN A;  4OZZ A;  2NST A;  1AIR A;  1IA5 A;  4XON A;  1KCD A;  4OJP A;  3FY3 A;  4W8S A;  3GRH A;  4W8R A;  4XNF A;  4U49 A;  3KRG A;  3VST A;  4OJL A;  4XLE A;  1OFM A;  4MXN A;  2QX3 A;  4OJ5 A;  4Z05 A;  4XN3 A;  1PLU A;  1O8F A;  2NT6 A;  1O8H A;  2UVE A;  1KTW A;  1RMG A;  4YZA A;  4EW9 A;  1CZF A;  1O8E A;  1OGM X;  2IQ7 A;  1DBG A;  2Z8G A;  4YEL A;  2O17 A;  1PE9 A;  1PXZ A;  2QY1 A;  4I84 A;  4XQF A;  4XOT A;  2O0V A;  1O88 A;  4AVZ A;  4PMH A;  4YZQ A;  4MR0 A;  1KCC A;  4Z06 A;  2EWE A;  3WWG A;  3VMW A;  2QXZ A;  4URR A;  1QCX A;  1O8G A;  1BHE A;  2X6Y A;  5AMV A;  5C1E A;  2NTP A;  1XG2 A;  4XOP A;  3ZSC A;  4C2L A;  4XKW A;  4Z03 A;  1OOC A;  3B8Y A;  3UW0 A;  1JRG A;  2X6W A;  1IDK A;  1OFL A;  4OZY A;  3GQ7 A;  1K5C A;  1O8J A;  1O8I A;  1BN8 A;  4XM3 A;  4W8T A;  3GQ8 A;  1DBO A;  4W8Q A;  4HWV A;  4OJ6 A;  1O8K A;  1GQ8 A;  1QJV A;  1HG8 A;  4XLC A;  4XL9 A;  2ODL A;  2VJI A;  2NT9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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