2O0VA

Pectate lyase bound to hexasaccharide compound iii
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pectate lyase
publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
pubmed doi rcsb
source organism Bacillus subtilis
molecule tags Lyase
total genus 158
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2o0vA00
5C1EA 2PECA 4YEJA 3WWGA 1OGMX 1O8KA 2VJIA 1O88A 3B8YA 4XLFA 1JTAA 1BHEA 2PYHA 3ZSCA 4OJLA 4PMHA 4W8RA 4YZXA 1IB4A 1PE9A 4YZAA 2IQ7A 4YELA 3B4NA 4U4BA 1PXZA 2NSTA 2VJJA 4OJOA 4Z05A 1KCCA 1RMGA 1DBOA 2NT9A 3EQNA 4XN0A 1DBGA 1O8HA 2O04A 1QCXA 4OZYA 4XN3A 4MR0A 4W8TA 4XORA 4XQFA 3UW0A 1NHCA 2UVEA 4XNFA 3GQ9A 2QY1A 5AMVA 2VBKA 1O8MA 3GQ8A 2Z8GA 1OFMA 3GQ7A 2O0VA 4XOPA 3ZPPA 1GQ8A 4OJ5A 2VBMA 1O8JA 2BSPA 1QJVA 1KTWA 1RU4A 3JURA 4HWVA 2O1DA 4URRA 2INVA 4XONA 1AIRA 1HG8A 1O8EA 4XLEA 1H80A 2X3HA 2VBEA 4W8SA 4OJ6A 2NTPA 4OZZA 2PYGA 4OJPA 4YZ0A 1JRGA 2O17A 4XR6A 4NK6A 3GQAA 3EQOA 3KRGA 4I84A 3FY3A 3LMWA 3SUCA 4XL9A 1WMRA 4XKWA 4XLAA 3VSUA 1O8IA 1O8LA 2NT6A 1OOCA 3VSTA 1IDJA 1PLUA 1RWRA 3GRHA 1EE6A 1X0CA 3B90A 2NTQA 3VMVA 2QX3A 4XLHA 2X85A 3T9GA 2QXZA 4NK8A 2X6WA 4Z06A 4XM3A 1OGOX 5C1CA 1CZFA 2UVFA 4AVZA 4XMYA 1O8DA 2X6YA 4W8QA 2X6XA 2INUA 4YZQA 3VMWA 4XKVA 1IA5A 1VBLA 4EW9A 1XG2A 4XOTA 2ODLA 4C2LA 1KCDA 3VSVA 2EWEA 1O8FA 4U49A 4Z03A 2NZMA 1K5CA 1IDKA 1O8GA 1BN8A 4MXNA 2NSPA 2O0WA 1OFLA 4XLCA 2NTBA
chains in the Genus database with same CATH superfamily
5C1EA 1WXRA 2PECA 4YEJA 3JX8A 3WWGA 1OGMX 3SZEA 1O8KA 2VJIA 1O88A 3B8YA 4XLFA 1JTAA 1BHEA 2PYHA 3ZSCA 3TH0A 4OJLA 4PMHA 4W8RA 4YZXA 2V5IA 2BM7A 1IB4A 1PE9A 3PETA 4YZAA 2W7ZA 2IQ7A 4YELA 3PSZA 3B4NA 4U4BA 1PXZA 2NSTA 2VJJA 2XTWA 3N6ZA 4OJOA 4Z05A 2VFPA 1KCCA 1RMGA 1DBOA 2BM6A 2NT9A 3EQNA 4YFOA 4XN0A 5DNSA 5JMCB 1DBGA 1O8HA 2O04A 1QCXA 4OZYA 4XN3A 1HF2A 2J8KA 4MR0A 2YUHA 4W8TA 4XORA 4XQFA 3UW0A 1NHCA 2UVEA 4XNFA 3GQ9A 1QRBA 1TYWA 1EA0A 2VFOA 2QY1A 1LLWA 5AMVA 2VBKA 1O8MA 1QA2A 1LLZA 3GQ8A 1TSPA 2Z8GA 1OFMA 3GQ7A 2O0VA 4XOPA 3ZPPA 1GQ8A 4OJ5A 2VBMA 3SY2A 4YEIA 1O8JA 2BSPA 1QJVA 1KTWA 1RU4A 3JURA 2F3LA 4HWVA 2O1DA 1QQ1A 4URRA 3BH6B 2INVA 3SQVA 4XONA 1QA1A 1AIRA 3PSSA 1HG8A 1O8EA 4XLEA 1H80A 2VFMA 1TYUA 2X3HA 2VBEA 2G0YA 2BX6A 4W8SA 4OJ6A 2IOUG 2XC1A 2NTPA 4OZZA 1OFEA 2PYGA 1K4ZA 4OJPA 4YZ0A 1JRGA 2O17A 4XR6A 4NK6A 3GQAA 3NB2A 3EQOA 2O6WA 1DABA 3KRGA 4I84A 2BM5A 2XTYA 4YDTA 3FY3A 3LMWA 3SUCA 4XL9A 1WMRA 2XT4A 4XLAA 4XKWA 3VSUA 4YCQA 1O8IA 1O8LA 2NT6A 3H09A 1OOCA 2J8IA 3VSTA 1IDJA 1TYVA 1EZGA 1PLUA 1RWRA 3GRHA 3LYCA 4KH3A 1EE6A 1X0CA 2VFQA 2QYUA 3DU1X 3B90A 2NTQA 3VMVA 2QX3A 3NAWA 2QZAA 4XLHA 2X85A 3ML3A 3P4GA 2QXZA 4NK8A 2X6WA 4Z06A 3T9GA 1QA3A 4XM3A 1CLWA 1OGOX 1TYXA 5C1CA 1CZFA 2UVFA 2XTXA 4AVZA 4XMYA 1O8DA 2X6YA 3N90A 4W8QA 2X6XA 2INUA 4YZQA 3VMWA 1OFDA 3LJYA 4XKVA 1IA5A 1VBLA 4EW9A 5JLVC 1XG2A 1LM1A 3RIQA 4XOTA 3SYJA 2ODLA 4JRAC 4C2LA 1KCDA 3VSVA 1L1IA 3AK5A 2XT2A 2EWEA 2VFNA 1O8FA 4YC5A 4U49A 4Z03A 2NZMA 1K5CA 1IDKA 1KQ5A 1O8GA 1BN8A 4OM9A 4MXNA 2NSPA 1K8FA 2O0WA 3BH7B 2BM4A 4V02C 1OFLA 1QRCA 4XLCA 4OPWA 2NTBA 2B0RA
chains in the Genus database with same CATH topology
5C1EA 2PECA 4YEJA 3WWGA 1OGMX 1O8KA 2VJIA 1O88A 3B8YA 4XLFA 1JTAA 1BHEA 2PYHA 3ZSCA 4OJLA 4PMHA 4W8RA 4YZXA 1IB4A 1PE9A 4YZAA 2IQ7A 4YELA 3B4NA 4U4BA 1PXZA 2NSTA 2VJJA 4OJOA 4Z05A 1KCCA 1RMGA 1DBOA 2NT9A 3EQNA 4XN0A 1DBGA 1O8HA 2O04A 1QCXA 4OZYA 4XN3A 4MR0A 4W8TA 4XORA 4XQFA 3UW0A 1NHCA 2UVEA 4XNFA 3GQ9A 2QY1A 5AMVA 2VBKA 1O8MA 3GQ8A 2Z8GA 1OFMA 3GQ7A 2O0VA 4XOPA 3ZPPA 1GQ8A 4OJ5A 2VBMA 1O8JA 2BSPA 1QJVA 1KTWA 1RU4A 3JURA 4HWVA 2O1DA 4URRA 2INVA 4XONA 1AIRA 1HG8A 1O8EA 4XLEA 1H80A 2X3HA 2VBEA 4W8SA 4OJ6A 2NTPA 4OZZA 2PYGA 4OJPA 4YZ0A 1JRGA 2O17A 4XR6A 4NK6A 3GQAA 3EQOA 3KRGA 4I84A 3FY3A 3LMWA 3SUCA 4XL9A 1WMRA 4XKWA 4XLAA 3VSUA 1O8IA 1O8LA 2NT6A 1OOCA 3VSTA 1IDJA 1PLUA 1RWRA 3GRHA 1EE6A 1X0CA 3B90A 2NTQA 3VMVA 2QX3A 4XLHA 2X85A 3T9GA 2QXZA 4NK8A 2X6WA 4Z06A 4XM3A 1OGOX 5C1CA 1CZFA 2UVFA 4AVZA 4XMYA 1O8DA 2X6YA 4W8QA 2X6XA 2INUA 4YZQA 3VMWA 4XKVA 1IA5A 1VBLA 4EW9A 1XG2A 4XOTA 2ODLA 4C2LA 1KCDA 3VSVA 2EWEA 1O8FA 4U49A 4Z03A 2NZMA 1K5CA 1IDKA 1O8GA 1BN8A 4MXNA 2NSPA 2O0WA 1OFLA 4XLCA 2NTBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5C1E A;  2PEC A;  4YEJ A;  3WWG A;  1OGM X;  1O8K A;  2VJI A;  1O88 A;  3B8Y A;  4XLF A;  1JTA A;  1BHE A;  2PYH A;  3ZSC A;  4OJL A;  4PMH A;  4W8R A;  4YZX A;  1IB4 A;  1PE9 A;  4YZA A;  2IQ7 A;  4YEL A;  3B4N A;  4U4B A;  1PXZ A;  2NST A;  2VJJ A;  4OJO A;  4Z05 A;  1KCC A;  1RMG A;  1DBO A;  2NT9 A;  3EQN A;  4XN0 A;  1DBG A;  1O8H A;  2O04 A;  1QCX A;  4OZY A;  4XN3 A;  4MR0 A;  4W8T A;  4XOR A;  4XQF A;  3UW0 A;  1NHC A;  2UVE A;  4XNF A;  3GQ9 A;  2QY1 A;  5AMV A;  2VBK A;  1O8M A;  3GQ8 A;  2Z8G A;  1OFM A;  3GQ7 A;  2O0V A;  4XOP A;  3ZPP A;  1GQ8 A;  4OJ5 A;  2VBM A;  1O8J A;  2BSP A;  1QJV A;  1KTW A;  1RU4 A;  3JUR A;  4HWV A;  2O1D A;  4URR A;  2INV A;  4XON A;  1AIR A;  1HG8 A;  1O8E A;  4XLE A;  1H80 A;  2X3H A;  2VBE A;  4W8S A;  4OJ6 A;  2NTP A;  4OZZ A;  2PYG A;  4OJP A;  4YZ0 A;  1JRG A;  2O17 A;  4XR6 A;  4NK6 A;  3GQA A;  3EQO A;  3KRG A;  4I84 A;  3FY3 A;  3LMW A;  3SUC A;  4XL9 A;  1WMR A;  4XKW A;  4XLA A;  3VSU A;  1O8I A;  1O8L A;  2NT6 A;  1OOC A;  3VST A;  1IDJ A;  1PLU A;  1RWR A;  3GRH A;  1EE6 A;  1X0C A;  3B90 A;  2NTQ A;  3VMV A;  2QX3 A;  4XLH A;  2X85 A;  3T9G A;  2QXZ A;  4NK8 A;  2X6W A;  4Z06 A;  4XM3 A;  1OGO X;  5C1C A;  1CZF A;  2UVF A;  4AVZ A;  4XMY A;  1O8D A;  2X6Y A;  4W8Q A;  2X6X A;  2INU A;  4YZQ A;  3VMW A;  4XKV A;  1IA5 A;  1VBL A;  4EW9 A;  1XG2 A;  4XOT A;  2ODL A;  4C2L A;  1KCD A;  3VSV A;  2EWE A;  1O8F A;  4U49 A;  4Z03 A;  2NZM A;  1K5C A;  1IDK A;  1O8G A;  1BN8 A;  4MXN A;  2NSP A;  2O0W A;  1OFL A;  4XLC A;  2NTB A; 
#chains in the Genus database with same CATH topology
 5C1E A;  1WXR A;  2PEC A;  4YEJ A;  3JX8 A;  3WWG A;  1OGM X;  3SZE A;  1O8K A;  2VJI A;  1O88 A;  3B8Y A;  4XLF A;  1JTA A;  1BHE A;  2PYH A;  3ZSC A;  3TH0 A;  4OJL A;  4PMH A;  4W8R A;  4YZX A;  2V5I A;  2BM7 A;  1IB4 A;  1PE9 A;  3PET A;  4YZA A;  2W7Z A;  2IQ7 A;  4YEL A;  3PSZ A;  3B4N A;  4U4B A;  1PXZ A;  2NST A;  2VJJ A;  2XTW A;  3N6Z A;  4OJO A;  4Z05 A;  2VFP A;  1KCC A;  1RMG A;  1DBO A;  2BM6 A;  2NT9 A;  3EQN A;  4YFO A;  4XN0 A;  5DNS A;  5JMC B;  1DBG A;  1O8H A;  2O04 A;  1QCX A;  4OZY A;  4XN3 A;  1HF2 A;  2J8K A;  4MR0 A;  2YUH A;  4W8T A;  4XOR A;  4XQF A;  3UW0 A;  1NHC A;  2UVE A;  4XNF A;  3GQ9 A;  1QRB A;  1TYW A;  1EA0 A;  2VFO A;  2QY1 A;  1LLW A;  5AMV A;  2VBK A;  1O8M A;  1QA2 A;  1LLZ A;  3GQ8 A;  1TSP A;  2Z8G A;  1OFM A;  3GQ7 A;  2O0V A;  4XOP A;  3ZPP A;  1GQ8 A;  4OJ5 A;  2VBM A;  3SY2 A;  4YEI A;  1O8J A;  2BSP A;  1QJV A;  1KTW A;  1RU4 A;  3JUR A;  2F3L A;  4HWV A;  2O1D A;  1QQ1 A;  4URR A;  3BH6 B;  2INV A;  3SQV A;  4XON A;  1QA1 A;  1AIR A;  3PSS A;  1HG8 A;  1O8E A;  4XLE A;  1H80 A;  2VFM A;  1TYU A;  2X3H A;  2VBE A;  2G0Y A;  2BX6 A;  4W8S A;  4OJ6 A;  2IOU G;  2XC1 A;  2NTP A;  4OZZ A;  1OFE A;  2PYG A;  1K4Z A;  4OJP A;  4YZ0 A;  1JRG A;  2O17 A;  4XR6 A;  4NK6 A;  3GQA A;  3NB2 A;  3EQO A;  2O6W A;  1DAB A;  3KRG A;  4I84 A;  2BM5 A;  2XTY A;  4YDT A;  3FY3 A;  3LMW A;  3SUC A;  4XL9 A;  1WMR A;  2XT4 A;  4XLA A;  4XKW A;  3VSU A;  4YCQ A;  1O8I A;  1O8L A;  2NT6 A;  3H09 A;  1OOC A;  2J8I A;  3VST A;  1IDJ A;  1TYV A;  1EZG A;  1PLU A;  1RWR A;  3GRH A;  3LYC A;  4KH3 A;  1EE6 A;  1X0C A;  2VFQ A;  2QYU A;  3DU1 X;  3B90 A;  2NTQ A;  3VMV A;  2QX3 A;  3NAW A;  2QZA A;  4XLH A;  2X85 A;  3ML3 A;  3P4G A;  2QXZ A;  4NK8 A;  2X6W A;  4Z06 A;  3T9G A;  1QA3 A;  4XM3 A;  1CLW A;  1OGO X;  1TYX A;  5C1C A;  1CZF A;  2UVF A;  2XTX A;  4AVZ A;  4XMY A;  1O8D A;  2X6Y A;  3N90 A;  4W8Q A;  2X6X A;  2INU A;  4YZQ A;  3VMW A;  1OFD A;  3LJY A;  4XKV A;  1IA5 A;  1VBL A;  4EW9 A;  5JLV C;  1XG2 A;  1LM1 A;  3RIQ A;  4XOT A;  3SYJ A;  2ODL A;  4JRA C;  4C2L A;  1KCD A;  3VSV A;  1L1I A;  3AK5 A;  2XT2 A;  2EWE A;  2VFN A;  1O8F A;  4YC5 A;  4U49 A;  4Z03 A;  2NZM A;  1K5C A;  1IDK A;  1KQ5 A;  1O8G A;  1BN8 A;  4OM9 A;  4MXN A;  2NSP A;  1K8F A;  2O0W A;  3BH7 B;  2BM4 A;  4V02 C;  1OFL A;  1QRC A;  4XLC A;  4OPW A;  2NTB A;  2B0R A; 
#chains in the Genus database with same CATH homology
 5C1E A;  2PEC A;  4YEJ A;  3WWG A;  1OGM X;  1O8K A;  2VJI A;  1O88 A;  3B8Y A;  4XLF A;  1JTA A;  1BHE A;  2PYH A;  3ZSC A;  4OJL A;  4PMH A;  4W8R A;  4YZX A;  1IB4 A;  1PE9 A;  4YZA A;  2IQ7 A;  4YEL A;  3B4N A;  4U4B A;  1PXZ A;  2NST A;  2VJJ A;  4OJO A;  4Z05 A;  1KCC A;  1RMG A;  1DBO A;  2NT9 A;  3EQN A;  4XN0 A;  1DBG A;  1O8H A;  2O04 A;  1QCX A;  4OZY A;  4XN3 A;  4MR0 A;  4W8T A;  4XOR A;  4XQF A;  3UW0 A;  1NHC A;  2UVE A;  4XNF A;  3GQ9 A;  2QY1 A;  5AMV A;  2VBK A;  1O8M A;  3GQ8 A;  2Z8G A;  1OFM A;  3GQ7 A;  2O0V A;  4XOP A;  3ZPP A;  1GQ8 A;  4OJ5 A;  2VBM A;  1O8J A;  2BSP A;  1QJV A;  1KTW A;  1RU4 A;  3JUR A;  4HWV A;  2O1D A;  4URR A;  2INV A;  4XON A;  1AIR A;  1HG8 A;  1O8E A;  4XLE A;  1H80 A;  2X3H A;  2VBE A;  4W8S A;  4OJ6 A;  2NTP A;  4OZZ A;  2PYG A;  4OJP A;  4YZ0 A;  1JRG A;  2O17 A;  4XR6 A;  4NK6 A;  3GQA A;  3EQO A;  3KRG A;  4I84 A;  3FY3 A;  3LMW A;  3SUC A;  4XL9 A;  1WMR A;  4XKW A;  4XLA A;  3VSU A;  1O8I A;  1O8L A;  2NT6 A;  1OOC A;  3VST A;  1IDJ A;  1PLU A;  1RWR A;  3GRH A;  1EE6 A;  1X0C A;  3B90 A;  2NTQ A;  3VMV A;  2QX3 A;  4XLH A;  2X85 A;  3T9G A;  2QXZ A;  4NK8 A;  2X6W A;  4Z06 A;  4XM3 A;  1OGO X;  5C1C A;  1CZF A;  2UVF A;  4AVZ A;  4XMY A;  1O8D A;  2X6Y A;  4W8Q A;  2X6X A;  2INU A;  4YZQ A;  3VMW A;  4XKV A;  1IA5 A;  1VBL A;  4EW9 A;  1XG2 A;  4XOT A;  2ODL A;  4C2L A;  1KCD A;  3VSV A;  2EWE A;  1O8F A;  4U49 A;  4Z03 A;  2NZM A;  1K5C A;  1IDK A;  1O8G A;  1BN8 A;  4MXN A;  2NSP A;  2O0W A;  1OFL A;  4XLC A;  2NTB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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