2O0VA

Pectate lyase bound to hexasaccharide compound iii
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pectate lyase
publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
pubmed doi rcsb
source organism Bacillus subtilis
molecule tags Lyase
total genus 158
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2o0vA00
1X0CA 3VMVA 5C1CA 3VSVA 4XKWA 2PECA 4W8QA 4U4BA 1QCXA 1H80A 2NT6A 4XN0A 1IA5A 1O8LA 4U49A 2PYHA 4PMHA 1IB4A 3B90A 4YZ0A 1OGOX 1PE9A 4YZQA 2EWEA 4XOPA 4XLEA 1PXZA 2IQ7A 3B4NA 4XORA 1KCDA 1O8KA 2INVA 2INUA 3VSTA 1WMRA 4XLHA 4XL9A 4XNFA 1O8MA 2NTQA 1CZFA 3ZSCA 1RMGA 1OFMA 1EE6A 1O8DA 1RU4A 3FY3A 2X3HA 3EQNA 2X85A 1O8GA 4OJ6A 1OFLA 3T9GA 3JURA 1K5CA 4Z06A 3KRGA 1O8EA 4MR0A 4MXNA 4NK8A 3EQOA 1IDJA 1JTAA 2O17A 2O0WA 1O88A 4AVZA 2QY1A 2Z8GA 4XM3A 3GRHA 1OOCA 1O8HA 4OZZA 4XONA 1AIRA 2X6XA 2UVFA 1IDKA 4YZXA 4XLFA 2VBEA 3GQ8A 4Z03A 2X6WA 1NHCA 2NZMA 1KCCA 1RWRA 3VSUA 2NTBA 4HWVA 3UW0A 1DBGA 5AMVA 2X6YA 1VBLA 4XR6A 4Z05A 1HG8A 2NSTA 2VBMA 1QJVA 2NSPA 2NT9A 2UVEA 3ZPPA 4OJ5A 2ODLA 3GQ9A 4URRA 2VJJA 3SUCA 1DBOA 1O8IA 3GQ7A 3B8YA 1BN8A 4W8SA 2VBKA 4XMYA 4I84A 4NK6A 4W8RA 4EW9A 4XOTA 3GQAA 2QX3A 4OJOA 2BSPA 1O8FA 2NTPA 4XLCA 1KTWA 2VJIA 4XN3A 5C1EA 1GQ8A 2O1DA 2PYGA 4OZYA 3VMWA 3WWGA 4XKVA 4OJPA 4YEJA 2QXZA 3LMWA 4XLAA 4XQFA 1BHEA 1O8JA 2O0VA 1XG2A 4C2LA 2O04A 1JRGA 4YZAA 1PLUA 4W8TA 4YELA 1OGMX 4OJLA
chains in the Genus database with same CATH superfamily
1X0CA 3VMVA 5DNSA 5C1CA 2VFMA 4XKWA 2PECA 4W8QA 4U4BA 1QCXA 1H80A 2NT6A 4XN0A 3VSVA 1O8LA 1QRBA 1IA5A 2QZAA 4U49A 1CLWA 2PYHA 3P4GA 4PMHA 2BM6A 1IB4A 3B90A 4YZ0A 2VFOA 1OGOX 4OPWA 1PE9A 4YZQA 2EWEA 3SYJA 1TYXA 3SQVA 4XOPA 4XLEA 3BH6B 1EZGA 1PXZA 2IQ7A 2IOUG 3RIQA 3NB2A 3B4NA 4XORA 1KCDA 1O8KA 2INVA 2INUA 3VSTA 1WMRA 4XLHA 4XL9A 4XNFA 1O8MA 2NTQA 1K8FA 2F3LA 1CZFA 3LYCA 3ZSCA 1RMGA 2YUHA 4KH3A 3PSZA 1L1IA 1OFMA 1TYVA 1EE6A 3TH0A 2J8IA 1O8DA 1RU4A 3FY3A 2X3HA 3EQNA 2X85A 1O8GA 4V02C 4YDTA 5JLVC 4OJ6A 3PETA 3DU1X 1OFLA 2J8KA 3JURA 3T9GA 3SZEA 1K5CA 1OFDA 3KRGA 4Z06A 1O8EA 3H09A 4MR0A 4MXNA 4NK8A 3EQOA 1IDJA 1JTAA 2O17A 2O6WA 2O0WA 2G0YA 4YC5A 1O88A 3ML3A 4AVZA 1LM1A 2QY1A 2B0RA 4YFOA 2Z8GA 4YEIA 3N90A 4XM3A 3GRHA 1OOCA 1O8HA 3N6ZA 4OZZA 4XONA 1AIRA 1K4ZA 2X6XA 2UVFA 2XT4A 5JMCB 2BM4A 1IDKA 4YZXA 4XLFA 4YCQA 3AK5A 2VBEA 1TSPA 1KQ5A 4JRAC 3GQ8A 4Z03A 2X6WA 1NHCA 2NZMA 1KCCA 1RWRA 3NAWA 3VSUA 1QA3A 2NTBA 4HWVA 3UW0A 1DBGA 5AMVA 2BM5A 1VBLA 2X6YA 4XR6A 3LJYA 4Z05A 1HG8A 1LLZA 2NSTA 2XC1A 2XTYA 2VBMA 1QJVA 2NSPA 2NT9A 2UVEA 3ZPPA 1QQ1A 4OJ5A 2ODLA 3GQ9A 4URRA 2VJJA 3SUCA 1DBOA 1O8IA 3GQ7A 3B8YA 1BN8A 4W8SA 3SY2A 2VBKA 4XMYA 1EA0A 4I84A 4NK6A 1HF2A 2XTWA 4W8RA 4EW9A 4XOTA 3GQAA 3PSSA 2QX3A 4OJOA 2BSPA 1O8FA 2NTPA 2V5IA 4XLCA 1KTWA 1QA2A 2VJIA 4XN3A 5C1EA 1GQ8A 2VFPA 2O1DA 2PYGA 2VFQA 2XT2A 4OZYA 2BM7A 3VMWA 4XKVA 3WWGA 4OJPA 4YEJA 2QXZA 2QYUA 1QRCA 1OFEA 3JX8A 3LMWA 4OM9A 4XLAA 4XQFA 1BHEA 3BH7B 2VFNA 1O8JA 1TYWA 2O0VA 1XG2A 1TYUA 4C2LA 2O04A 1JRGA 4YZAA 1PLUA 4W8TA 1QA1A 1WXRA 1DABA 2W7ZA 2XTXA 2BX6A 4YELA 1OGMX 1LLWA 4OJLA
chains in the Genus database with same CATH topology
1X0CA 3VMVA 5C1CA 3VSVA 4XKWA 2PECA 4W8QA 4U4BA 1QCXA 1H80A 2NT6A 4XN0A 1IA5A 1O8LA 4U49A 2PYHA 4PMHA 1IB4A 3B90A 4YZ0A 1OGOX 1PE9A 4YZQA 2EWEA 4XOPA 4XLEA 1PXZA 2IQ7A 3B4NA 4XORA 1KCDA 1O8KA 2INVA 2INUA 3VSTA 1WMRA 4XLHA 4XL9A 4XNFA 1O8MA 2NTQA 1CZFA 3ZSCA 1RMGA 1OFMA 1EE6A 1O8DA 1RU4A 3FY3A 2X3HA 3EQNA 2X85A 1O8GA 4OJ6A 1OFLA 3T9GA 3JURA 1K5CA 4Z06A 3KRGA 1O8EA 4MR0A 4MXNA 4NK8A 3EQOA 1IDJA 1JTAA 2O17A 2O0WA 1O88A 4AVZA 2QY1A 2Z8GA 4XM3A 3GRHA 1OOCA 1O8HA 4OZZA 4XONA 1AIRA 2X6XA 2UVFA 1IDKA 4YZXA 4XLFA 2VBEA 3GQ8A 4Z03A 2X6WA 1NHCA 2NZMA 1KCCA 1RWRA 3VSUA 2NTBA 4HWVA 3UW0A 1DBGA 5AMVA 2X6YA 1VBLA 4XR6A 4Z05A 1HG8A 2NSTA 2VBMA 1QJVA 2NSPA 2NT9A 2UVEA 3ZPPA 4OJ5A 2ODLA 3GQ9A 4URRA 2VJJA 3SUCA 1DBOA 1O8IA 3GQ7A 3B8YA 1BN8A 4W8SA 2VBKA 4XMYA 4I84A 4NK6A 4W8RA 4EW9A 4XOTA 3GQAA 2QX3A 4OJOA 2BSPA 1O8FA 2NTPA 4XLCA 1KTWA 2VJIA 4XN3A 5C1EA 1GQ8A 2O1DA 2PYGA 4OZYA 3VMWA 3WWGA 4XKVA 4OJPA 4YEJA 2QXZA 3LMWA 4XLAA 4XQFA 1BHEA 1O8JA 2O0VA 1XG2A 4C2LA 2O04A 1JRGA 4YZAA 1PLUA 4W8TA 4YELA 1OGMX 4OJLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1X0C A;  3VMV A;  5C1C A;  3VSV A;  4XKW A;  2PEC A;  4W8Q A;  4U4B A;  1QCX A;  1H80 A;  2NT6 A;  4XN0 A;  1IA5 A;  1O8L A;  4U49 A;  2PYH A;  4PMH A;  1IB4 A;  3B90 A;  4YZ0 A;  1OGO X;  1PE9 A;  4YZQ A;  2EWE A;  4XOP A;  4XLE A;  1PXZ A;  2IQ7 A;  3B4N A;  4XOR A;  1KCD A;  1O8K A;  2INV A;  2INU A;  3VST A;  1WMR A;  4XLH A;  4XL9 A;  4XNF A;  1O8M A;  2NTQ A;  1CZF A;  3ZSC A;  1RMG A;  1OFM A;  1EE6 A;  1O8D A;  1RU4 A;  3FY3 A;  2X3H A;  3EQN A;  2X85 A;  1O8G A;  4OJ6 A;  1OFL A;  3T9G A;  3JUR A;  1K5C A;  4Z06 A;  3KRG A;  1O8E A;  4MR0 A;  4MXN A;  4NK8 A;  3EQO A;  1IDJ A;  1JTA A;  2O17 A;  2O0W A;  1O88 A;  4AVZ A;  2QY1 A;  2Z8G A;  4XM3 A;  3GRH A;  1OOC A;  1O8H A;  4OZZ A;  4XON A;  1AIR A;  2X6X A;  2UVF A;  1IDK A;  4YZX A;  4XLF A;  2VBE A;  3GQ8 A;  4Z03 A;  2X6W A;  1NHC A;  2NZM A;  1KCC A;  1RWR A;  3VSU A;  2NTB A;  4HWV A;  3UW0 A;  1DBG A;  5AMV A;  2X6Y A;  1VBL A;  4XR6 A;  4Z05 A;  1HG8 A;  2NST A;  2VBM A;  1QJV A;  2NSP A;  2NT9 A;  2UVE A;  3ZPP A;  4OJ5 A;  2ODL A;  3GQ9 A;  4URR A;  2VJJ A;  3SUC A;  1DBO A;  1O8I A;  3GQ7 A;  3B8Y A;  1BN8 A;  4W8S A;  2VBK A;  4XMY A;  4I84 A;  4NK6 A;  4W8R A;  4EW9 A;  4XOT A;  3GQA A;  2QX3 A;  4OJO A;  2BSP A;  1O8F A;  2NTP A;  4XLC A;  1KTW A;  2VJI A;  4XN3 A;  5C1E A;  1GQ8 A;  2O1D A;  2PYG A;  4OZY A;  3VMW A;  3WWG A;  4XKV A;  4OJP A;  4YEJ A;  2QXZ A;  3LMW A;  4XLA A;  4XQF A;  1BHE A;  1O8J A;  2O0V A;  1XG2 A;  4C2L A;  2O04 A;  1JRG A;  4YZA A;  1PLU A;  4W8T A;  4YEL A;  1OGM X;  4OJL A; 
#chains in the Genus database with same CATH topology
 1X0C A;  3VMV A;  5DNS A;  5C1C A;  2VFM A;  4XKW A;  2PEC A;  4W8Q A;  4U4B A;  1QCX A;  1H80 A;  2NT6 A;  4XN0 A;  3VSV A;  1O8L A;  1QRB A;  1IA5 A;  2QZA A;  4U49 A;  1CLW A;  2PYH A;  3P4G A;  4PMH A;  2BM6 A;  1IB4 A;  3B90 A;  4YZ0 A;  2VFO A;  1OGO X;  4OPW A;  1PE9 A;  4YZQ A;  2EWE A;  3SYJ A;  1TYX A;  3SQV A;  4XOP A;  4XLE A;  3BH6 B;  1EZG A;  1PXZ A;  2IQ7 A;  2IOU G;  3RIQ A;  3NB2 A;  3B4N A;  4XOR A;  1KCD A;  1O8K A;  2INV A;  2INU A;  3VST A;  1WMR A;  4XLH A;  4XL9 A;  4XNF A;  1O8M A;  2NTQ A;  1K8F A;  2F3L A;  1CZF A;  3LYC A;  3ZSC A;  1RMG A;  2YUH A;  4KH3 A;  3PSZ A;  1L1I A;  1OFM A;  1TYV A;  1EE6 A;  3TH0 A;  2J8I A;  1O8D A;  1RU4 A;  3FY3 A;  2X3H A;  3EQN A;  2X85 A;  1O8G A;  4V02 C;  4YDT A;  5JLV C;  4OJ6 A;  3PET A;  3DU1 X;  1OFL A;  2J8K A;  3JUR A;  3T9G A;  3SZE A;  1K5C A;  1OFD A;  3KRG A;  4Z06 A;  1O8E A;  3H09 A;  4MR0 A;  4MXN A;  4NK8 A;  3EQO A;  1IDJ A;  1JTA A;  2O17 A;  2O6W A;  2O0W A;  2G0Y A;  4YC5 A;  1O88 A;  3ML3 A;  4AVZ A;  1LM1 A;  2QY1 A;  2B0R A;  4YFO A;  2Z8G A;  4YEI A;  3N90 A;  4XM3 A;  3GRH A;  1OOC A;  1O8H A;  3N6Z A;  4OZZ A;  4XON A;  1AIR A;  1K4Z A;  2X6X A;  2UVF A;  2XT4 A;  5JMC B;  2BM4 A;  1IDK A;  4YZX A;  4XLF A;  4YCQ A;  3AK5 A;  2VBE A;  1TSP A;  1KQ5 A;  4JRA C;  3GQ8 A;  4Z03 A;  2X6W A;  1NHC A;  2NZM A;  1KCC A;  1RWR A;  3NAW A;  3VSU A;  1QA3 A;  2NTB A;  4HWV A;  3UW0 A;  1DBG A;  5AMV A;  2BM5 A;  1VBL A;  2X6Y A;  4XR6 A;  3LJY A;  4Z05 A;  1HG8 A;  1LLZ A;  2NST A;  2XC1 A;  2XTY A;  2VBM A;  1QJV A;  2NSP A;  2NT9 A;  2UVE A;  3ZPP A;  1QQ1 A;  4OJ5 A;  2ODL A;  3GQ9 A;  4URR A;  2VJJ A;  3SUC A;  1DBO A;  1O8I A;  3GQ7 A;  3B8Y A;  1BN8 A;  4W8S A;  3SY2 A;  2VBK A;  4XMY A;  1EA0 A;  4I84 A;  4NK6 A;  1HF2 A;  2XTW A;  4W8R A;  4EW9 A;  4XOT A;  3GQA A;  3PSS A;  2QX3 A;  4OJO A;  2BSP A;  1O8F A;  2NTP A;  2V5I A;  4XLC A;  1KTW A;  1QA2 A;  2VJI A;  4XN3 A;  5C1E A;  1GQ8 A;  2VFP A;  2O1D A;  2PYG A;  2VFQ A;  2XT2 A;  4OZY A;  2BM7 A;  3VMW A;  4XKV A;  3WWG A;  4OJP A;  4YEJ A;  2QXZ A;  2QYU A;  1QRC A;  1OFE A;  3JX8 A;  3LMW A;  4OM9 A;  4XLA A;  4XQF A;  1BHE A;  3BH7 B;  2VFN A;  1O8J A;  1TYW A;  2O0V A;  1XG2 A;  1TYU A;  4C2L A;  2O04 A;  1JRG A;  4YZA A;  1PLU A;  4W8T A;  1QA1 A;  1WXR A;  1DAB A;  2W7Z A;  2XTX A;  2BX6 A;  4YEL A;  1OGM X;  1LLW A;  4OJL A; 
#chains in the Genus database with same CATH homology
 1X0C A;  3VMV A;  5C1C A;  3VSV A;  4XKW A;  2PEC A;  4W8Q A;  4U4B A;  1QCX A;  1H80 A;  2NT6 A;  4XN0 A;  1IA5 A;  1O8L A;  4U49 A;  2PYH A;  4PMH A;  1IB4 A;  3B90 A;  4YZ0 A;  1OGO X;  1PE9 A;  4YZQ A;  2EWE A;  4XOP A;  4XLE A;  1PXZ A;  2IQ7 A;  3B4N A;  4XOR A;  1KCD A;  1O8K A;  2INV A;  2INU A;  3VST A;  1WMR A;  4XLH A;  4XL9 A;  4XNF A;  1O8M A;  2NTQ A;  1CZF A;  3ZSC A;  1RMG A;  1OFM A;  1EE6 A;  1O8D A;  1RU4 A;  3FY3 A;  2X3H A;  3EQN A;  2X85 A;  1O8G A;  4OJ6 A;  1OFL A;  3T9G A;  3JUR A;  1K5C A;  4Z06 A;  3KRG A;  1O8E A;  4MR0 A;  4MXN A;  4NK8 A;  3EQO A;  1IDJ A;  1JTA A;  2O17 A;  2O0W A;  1O88 A;  4AVZ A;  2QY1 A;  2Z8G A;  4XM3 A;  3GRH A;  1OOC A;  1O8H A;  4OZZ A;  4XON A;  1AIR A;  2X6X A;  2UVF A;  1IDK A;  4YZX A;  4XLF A;  2VBE A;  3GQ8 A;  4Z03 A;  2X6W A;  1NHC A;  2NZM A;  1KCC A;  1RWR A;  3VSU A;  2NTB A;  4HWV A;  3UW0 A;  1DBG A;  5AMV A;  2X6Y A;  1VBL A;  4XR6 A;  4Z05 A;  1HG8 A;  2NST A;  2VBM A;  1QJV A;  2NSP A;  2NT9 A;  2UVE A;  3ZPP A;  4OJ5 A;  2ODL A;  3GQ9 A;  4URR A;  2VJJ A;  3SUC A;  1DBO A;  1O8I A;  3GQ7 A;  3B8Y A;  1BN8 A;  4W8S A;  2VBK A;  4XMY A;  4I84 A;  4NK6 A;  4W8R A;  4EW9 A;  4XOT A;  3GQA A;  2QX3 A;  4OJO A;  2BSP A;  1O8F A;  2NTP A;  4XLC A;  1KTW A;  2VJI A;  4XN3 A;  5C1E A;  1GQ8 A;  2O1D A;  2PYG A;  4OZY A;  3VMW A;  3WWG A;  4XKV A;  4OJP A;  4YEJ A;  2QXZ A;  3LMW A;  4XLA A;  4XQF A;  1BHE A;  1O8J A;  2O0V A;  1XG2 A;  4C2L A;  2O04 A;  1JRG A;  4YZA A;  1PLU A;  4W8T A;  4YEL A;  1OGM X;  4OJL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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