2O0VA

Pectate lyase bound to hexasaccharide compound iii
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
399
structure length
399
Chain Sequence
b'ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pectate lyase
publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
pubmed doi rcsb
source organism Bacillus subtilis
molecule tags Lyase
total genus 158
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2o0vA00
3KRGA 4PMHA 4XMYA 4Z03A 4OJLA 4YZ0A 1O8HA 1WMRA 2VJIA 1NHCA 4XR6A 2QY1A 2IQ7A 1O8EA 3FY3A 4NK8A 4U4BA 4C2LA 4HWVA 2QX3A 2NTPA 3GQ7A 3B8YA 4OJ6A 1XG2A 5AMVA 4W8TA 3JURA 1OFLA 4Z05A 2EWEA 4XKWA 5C1EA 3WWGA 1HG8A 4YZXA 1IDKA 4YZAA 1O8JA 2PYHA 1GQ8A 4URRA 1OFMA 2X3HA 1OGMX 4XONA 3ZPPA 4XOPA 2NTQA 4XKVA 1QJVA 1RWRA 1O8KA 3B90A 3EQOA 4XLCA 1BHEA 4MR0A 1X0CA 2NSPA 3GQ9A 3LMWA 1IDJA 1KCCA 1RU4A 4XM3A 4EW9A 1JTAA 4XN0A 4XLAA 3VSVA 2X6WA 1OGOX 1O8IA 1O8GA 4OJPA 2PECA 1OOCA 1PXZA 2X6XA 1BN8A 3VMWA 3UW0A 2UVEA 3VSTA 1PLUA 1JRGA 1O8MA 3VSUA 1O8LA 2VJJA 2NT9A 4OJOA 1IB4A 1AIRA 1KCDA 4NK6A 2O04A 4U49A 4AVZA 4XNFA 1DBGA 2O17A 4YZQA 2Z8GA 1O88A 2PYGA 1O8DA 4XL9A 3SUCA 4XLEA 4W8SA 1RMGA 1QCXA 1IA5A 1VBLA 2VBKA 4OZYA 2NT6A 2X85A 2O1DA 4YELA 2O0VA 2X6YA 4OJ5A 2UVFA 4XLFA 1CZFA 3VMVA 2NZMA 4XOTA 1KTWA 1EE6A 1O8FA 3EQNA 2VBEA 1PE9A 4W8QA 1DBOA 3GRHA 2BSPA 2O0WA 4XQFA 1K5CA 2NTBA 3GQAA 4OZZA 2ODLA 3T9GA 1H80A 4XLHA 2QXZA 4Z06A 2INUA 2NSTA 4XN3A 2VBMA 4I84A 4YEJA 5C1CA 3B4NA 3ZSCA 4XORA 3GQ8A 4W8RA 2INVA 4MXNA
chains in the Genus database with same CATH superfamily
3KRGA 4PMHA 4XMYA 4Z03A 1LLZA 4OJLA 3PSZA 4YZ0A 1O8HA 1OFEA 4OM9A 2XTWA 2BM7A 1WMRA 5DNSA 2VJIA 2BM6A 1NHCA 4XR6A 4YCQA 2QY1A 1QRBA 1O8EA 2IQ7A 3LYCA 3FY3A 4NK8A 1WXRA 3LJYA 4U4BA 4C2LA 4HWVA 2QX3A 2BM5A 2NTPA 3GQ7A 3B8YA 4OJ6A 1XG2A 1QA1A 5AMVA 4W8TA 3JURA 3DU1X 1OFLA 4Z05A 4JRAC 1L1IA 1EA0A 1CLWA 2EWEA 4XKWA 5C1EA 3WWGA 1HG8A 1LLWA 1QRCA 2G0YA 4YZXA 3SYJA 1IDKA 4YZAA 1O8JA 2PYHA 1GQ8A 4URRA 1OFMA 2X3HA 3N6ZA 1OGMX 4XONA 3ZPPA 4XOPA 2NTQA 1TYXA 3ML3A 2O6WA 2VFNA 2VFQA 4XKVA 1QJVA 2QYUA 5JMCB 1QA2A 1RWRA 4YDTA 2VFOA 1O8KA 3B90A 3EQOA 4XLCA 4YC5A 3AK5A 1BHEA 4MR0A 1TYWA 3JX8A 1X0CA 2QZAA 2NSPA 3RIQA 1EZGA 2V5IA 3GQ9A 3LMWA 1IDJA 1KCCA 1RU4A 4XM3A 4EW9A 1JTAA 4XN0A 4XLAA 3TH0A 3VSVA 2X6WA 1OGOX 1O8IA 1O8GA 4OJPA 2PECA 3H09A 1OOCA 1PXZA 2X6XA 2YUHA 1DABA 1BN8A 3VMWA 3UW0A 2UVEA 3VSTA 1PLUA 2F3LA 2XT4A 1JRGA 1O8MA 3VSUA 1O8LA 2VJJA 2NT9A 4OJOA 1IB4A 1AIRA 1KCDA 4NK6A 2J8IA 2O04A 1TYVA 4U49A 4AVZA 4XNFA 1DBGA 2O17A 4YZQA 2Z8GA 1HF2A 5JLVC 1O88A 2PYGA 1O8DA 2VFPA 4XL9A 3SUCA 4XLEA 2XC1A 4W8SA 1RMGA 1QCXA 1IA5A 3BH6B 3SZEA 1VBLA 2VBKA 3BH7B 4OZYA 2BX6A 2XTXA 2NT6A 2X85A 2O1DA 3SY2A 4YELA 1QQ1A 2O0VA 1TYUA 2X6YA 4OJ5A 2UVFA 4XLFA 3SQVA 1CZFA 3VMVA 2NZMA 4XOTA 1LM1A 1KTWA 1EE6A 1O8FA 2VFMA 3EQNA 3NAWA 3P4GA 2VBEA 1PE9A 3PSSA 3NB2A 4W8QA 1DBOA 3GRHA 2BSPA 2O0WA 4XQFA 1K5CA 2NTBA 3GQAA 4OZZA 2ODLA 1K8FA 2IOUG 3T9GA 1H80A 4XLHA 4V02C 2QXZA 2J8KA 4Z06A 2INUA 2NSTA 2XTYA 2XT2A 4XN3A 2B0RA 4YEIA 3N90A 3PETA 2VBMA 4KH3A 4I84A 4YEJA 4YFOA 1OFDA 5C1CA 1KQ5A 2BM4A 3B4NA 3ZSCA 4XORA 4OPWA 1QA3A 3GQ8A 2W7ZA 4W8RA 2INVA 1K4ZA 1TSPA 4MXNA
chains in the Genus database with same CATH topology
3KRGA 4PMHA 4XMYA 4Z03A 4OJLA 4YZ0A 1O8HA 1WMRA 2VJIA 1NHCA 4XR6A 2QY1A 2IQ7A 1O8EA 3FY3A 4NK8A 4U4BA 4C2LA 4HWVA 2QX3A 2NTPA 3GQ7A 3B8YA 4OJ6A 1XG2A 5AMVA 4W8TA 3JURA 1OFLA 4Z05A 2EWEA 4XKWA 5C1EA 3WWGA 1HG8A 4YZXA 1IDKA 4YZAA 1O8JA 2PYHA 1GQ8A 4URRA 1OFMA 2X3HA 1OGMX 4XONA 3ZPPA 4XOPA 2NTQA 4XKVA 1QJVA 1RWRA 1O8KA 3B90A 3EQOA 4XLCA 1BHEA 4MR0A 1X0CA 2NSPA 3GQ9A 3LMWA 1IDJA 1KCCA 1RU4A 4XM3A 4EW9A 1JTAA 4XN0A 4XLAA 3VSVA 2X6WA 1OGOX 1O8IA 1O8GA 4OJPA 2PECA 1OOCA 1PXZA 2X6XA 1BN8A 3VMWA 3UW0A 2UVEA 3VSTA 1PLUA 1JRGA 1O8MA 3VSUA 1O8LA 2VJJA 2NT9A 4OJOA 1IB4A 1AIRA 1KCDA 4NK6A 2O04A 4U49A 4AVZA 4XNFA 1DBGA 2O17A 4YZQA 2Z8GA 1O88A 2PYGA 1O8DA 4XL9A 3SUCA 4XLEA 4W8SA 1RMGA 1QCXA 1IA5A 1VBLA 2VBKA 4OZYA 2NT6A 2X85A 2O1DA 4YELA 2O0VA 2X6YA 4OJ5A 2UVFA 4XLFA 1CZFA 3VMVA 2NZMA 4XOTA 1KTWA 1EE6A 1O8FA 3EQNA 2VBEA 1PE9A 4W8QA 1DBOA 3GRHA 2BSPA 2O0WA 4XQFA 1K5CA 2NTBA 3GQAA 4OZZA 2ODLA 3T9GA 1H80A 4XLHA 2QXZA 4Z06A 2INUA 2NSTA 4XN3A 2VBMA 4I84A 4YEJA 5C1CA 3B4NA 3ZSCA 4XORA 3GQ8A 4W8RA 2INVA 4MXNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KRG A;  4PMH A;  4XMY A;  4Z03 A;  4OJL A;  4YZ0 A;  1O8H A;  1WMR A;  2VJI A;  1NHC A;  4XR6 A;  2QY1 A;  2IQ7 A;  1O8E A;  3FY3 A;  4NK8 A;  4U4B A;  4C2L A;  4HWV A;  2QX3 A;  2NTP A;  3GQ7 A;  3B8Y A;  4OJ6 A;  1XG2 A;  5AMV A;  4W8T A;  3JUR A;  1OFL A;  4Z05 A;  2EWE A;  4XKW A;  5C1E A;  3WWG A;  1HG8 A;  4YZX A;  1IDK A;  4YZA A;  1O8J A;  2PYH A;  1GQ8 A;  4URR A;  1OFM A;  2X3H A;  1OGM X;  4XON A;  3ZPP A;  4XOP A;  2NTQ A;  4XKV A;  1QJV A;  1RWR A;  1O8K A;  3B90 A;  3EQO A;  4XLC A;  1BHE A;  4MR0 A;  1X0C A;  2NSP A;  3GQ9 A;  3LMW A;  1IDJ A;  1KCC A;  1RU4 A;  4XM3 A;  4EW9 A;  1JTA A;  4XN0 A;  4XLA A;  3VSV A;  2X6W A;  1OGO X;  1O8I A;  1O8G A;  4OJP A;  2PEC A;  1OOC A;  1PXZ A;  2X6X A;  1BN8 A;  3VMW A;  3UW0 A;  2UVE A;  3VST A;  1PLU A;  1JRG A;  1O8M A;  3VSU A;  1O8L A;  2VJJ A;  2NT9 A;  4OJO A;  1IB4 A;  1AIR A;  1KCD A;  4NK6 A;  2O04 A;  4U49 A;  4AVZ A;  4XNF A;  1DBG A;  2O17 A;  4YZQ A;  2Z8G A;  1O88 A;  2PYG A;  1O8D A;  4XL9 A;  3SUC A;  4XLE A;  4W8S A;  1RMG A;  1QCX A;  1IA5 A;  1VBL A;  2VBK A;  4OZY A;  2NT6 A;  2X85 A;  2O1D A;  4YEL A;  2O0V A;  2X6Y A;  4OJ5 A;  2UVF A;  4XLF A;  1CZF A;  3VMV A;  2NZM A;  4XOT A;  1KTW A;  1EE6 A;  1O8F A;  3EQN A;  2VBE A;  1PE9 A;  4W8Q A;  1DBO A;  3GRH A;  2BSP A;  2O0W A;  4XQF A;  1K5C A;  2NTB A;  3GQA A;  4OZZ A;  2ODL A;  3T9G A;  1H80 A;  4XLH A;  2QXZ A;  4Z06 A;  2INU A;  2NST A;  4XN3 A;  2VBM A;  4I84 A;  4YEJ A;  5C1C A;  3B4N A;  3ZSC A;  4XOR A;  3GQ8 A;  4W8R A;  2INV A;  4MXN A; 
#chains in the Genus database with same CATH topology
 3KRG A;  4PMH A;  4XMY A;  4Z03 A;  1LLZ A;  4OJL A;  3PSZ A;  4YZ0 A;  1O8H A;  1OFE A;  4OM9 A;  2XTW A;  2BM7 A;  1WMR A;  5DNS A;  2VJI A;  2BM6 A;  1NHC A;  4XR6 A;  4YCQ A;  2QY1 A;  1QRB A;  1O8E A;  2IQ7 A;  3LYC A;  3FY3 A;  4NK8 A;  1WXR A;  3LJY A;  4U4B A;  4C2L A;  4HWV A;  2QX3 A;  2BM5 A;  2NTP A;  3GQ7 A;  3B8Y A;  4OJ6 A;  1XG2 A;  1QA1 A;  5AMV A;  4W8T A;  3JUR A;  3DU1 X;  1OFL A;  4Z05 A;  4JRA C;  1L1I A;  1EA0 A;  1CLW A;  2EWE A;  4XKW A;  5C1E A;  3WWG A;  1HG8 A;  1LLW A;  1QRC A;  2G0Y A;  4YZX A;  3SYJ A;  1IDK A;  4YZA A;  1O8J A;  2PYH A;  1GQ8 A;  4URR A;  1OFM A;  2X3H A;  3N6Z A;  1OGM X;  4XON A;  3ZPP A;  4XOP A;  2NTQ A;  1TYX A;  3ML3 A;  2O6W A;  2VFN A;  2VFQ A;  4XKV A;  1QJV A;  2QYU A;  5JMC B;  1QA2 A;  1RWR A;  4YDT A;  2VFO A;  1O8K A;  3B90 A;  3EQO A;  4XLC A;  4YC5 A;  3AK5 A;  1BHE A;  4MR0 A;  1TYW A;  3JX8 A;  1X0C A;  2QZA A;  2NSP A;  3RIQ A;  1EZG A;  2V5I A;  3GQ9 A;  3LMW A;  1IDJ A;  1KCC A;  1RU4 A;  4XM3 A;  4EW9 A;  1JTA A;  4XN0 A;  4XLA A;  3TH0 A;  3VSV A;  2X6W A;  1OGO X;  1O8I A;  1O8G A;  4OJP A;  2PEC A;  3H09 A;  1OOC A;  1PXZ A;  2X6X A;  2YUH A;  1DAB A;  1BN8 A;  3VMW A;  3UW0 A;  2UVE A;  3VST A;  1PLU A;  2F3L A;  2XT4 A;  1JRG A;  1O8M A;  3VSU A;  1O8L A;  2VJJ A;  2NT9 A;  4OJO A;  1IB4 A;  1AIR A;  1KCD A;  4NK6 A;  2J8I A;  2O04 A;  1TYV A;  4U49 A;  4AVZ A;  4XNF A;  1DBG A;  2O17 A;  4YZQ A;  2Z8G A;  1HF2 A;  5JLV C;  1O88 A;  2PYG A;  1O8D A;  2VFP A;  4XL9 A;  3SUC A;  4XLE A;  2XC1 A;  4W8S A;  1RMG A;  1QCX A;  1IA5 A;  3BH6 B;  3SZE A;  1VBL A;  2VBK A;  3BH7 B;  4OZY A;  2BX6 A;  2XTX A;  2NT6 A;  2X85 A;  2O1D A;  3SY2 A;  4YEL A;  1QQ1 A;  2O0V A;  1TYU A;  2X6Y A;  4OJ5 A;  2UVF A;  4XLF A;  3SQV A;  1CZF A;  3VMV A;  2NZM A;  4XOT A;  1LM1 A;  1KTW A;  1EE6 A;  1O8F A;  2VFM A;  3EQN A;  3NAW A;  3P4G A;  2VBE A;  1PE9 A;  3PSS A;  3NB2 A;  4W8Q A;  1DBO A;  3GRH A;  2BSP A;  2O0W A;  4XQF A;  1K5C A;  2NTB A;  3GQA A;  4OZZ A;  2ODL A;  1K8F A;  2IOU G;  3T9G A;  1H80 A;  4XLH A;  4V02 C;  2QXZ A;  2J8K A;  4Z06 A;  2INU A;  2NST A;  2XTY A;  2XT2 A;  4XN3 A;  2B0R A;  4YEI A;  3N90 A;  3PET A;  2VBM A;  4KH3 A;  4I84 A;  4YEJ A;  4YFO A;  1OFD A;  5C1C A;  1KQ5 A;  2BM4 A;  3B4N A;  3ZSC A;  4XOR A;  4OPW A;  1QA3 A;  3GQ8 A;  2W7Z A;  4W8R A;  2INV A;  1K4Z A;  1TSP A;  4MXN A; 
#chains in the Genus database with same CATH homology
 3KRG A;  4PMH A;  4XMY A;  4Z03 A;  4OJL A;  4YZ0 A;  1O8H A;  1WMR A;  2VJI A;  1NHC A;  4XR6 A;  2QY1 A;  2IQ7 A;  1O8E A;  3FY3 A;  4NK8 A;  4U4B A;  4C2L A;  4HWV A;  2QX3 A;  2NTP A;  3GQ7 A;  3B8Y A;  4OJ6 A;  1XG2 A;  5AMV A;  4W8T A;  3JUR A;  1OFL A;  4Z05 A;  2EWE A;  4XKW A;  5C1E A;  3WWG A;  1HG8 A;  4YZX A;  1IDK A;  4YZA A;  1O8J A;  2PYH A;  1GQ8 A;  4URR A;  1OFM A;  2X3H A;  1OGM X;  4XON A;  3ZPP A;  4XOP A;  2NTQ A;  4XKV A;  1QJV A;  1RWR A;  1O8K A;  3B90 A;  3EQO A;  4XLC A;  1BHE A;  4MR0 A;  1X0C A;  2NSP A;  3GQ9 A;  3LMW A;  1IDJ A;  1KCC A;  1RU4 A;  4XM3 A;  4EW9 A;  1JTA A;  4XN0 A;  4XLA A;  3VSV A;  2X6W A;  1OGO X;  1O8I A;  1O8G A;  4OJP A;  2PEC A;  1OOC A;  1PXZ A;  2X6X A;  1BN8 A;  3VMW A;  3UW0 A;  2UVE A;  3VST A;  1PLU A;  1JRG A;  1O8M A;  3VSU A;  1O8L A;  2VJJ A;  2NT9 A;  4OJO A;  1IB4 A;  1AIR A;  1KCD A;  4NK6 A;  2O04 A;  4U49 A;  4AVZ A;  4XNF A;  1DBG A;  2O17 A;  4YZQ A;  2Z8G A;  1O88 A;  2PYG A;  1O8D A;  4XL9 A;  3SUC A;  4XLE A;  4W8S A;  1RMG A;  1QCX A;  1IA5 A;  1VBL A;  2VBK A;  4OZY A;  2NT6 A;  2X85 A;  2O1D A;  4YEL A;  2O0V A;  2X6Y A;  4OJ5 A;  2UVF A;  4XLF A;  1CZF A;  3VMV A;  2NZM A;  4XOT A;  1KTW A;  1EE6 A;  1O8F A;  3EQN A;  2VBE A;  1PE9 A;  4W8Q A;  1DBO A;  3GRH A;  2BSP A;  2O0W A;  4XQF A;  1K5C A;  2NTB A;  3GQA A;  4OZZ A;  2ODL A;  3T9G A;  1H80 A;  4XLH A;  2QXZ A;  4Z06 A;  2INU A;  2NST A;  4XN3 A;  2VBM A;  4I84 A;  4YEJ A;  5C1C A;  3B4N A;  3ZSC A;  4XOR A;  3GQ8 A;  4W8R A;  2INV A;  4MXN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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