2O0VA

Pectate lyase bound to hexasaccharide compound iii
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
pubmed doi rcsb
source organism Bacillus subtilis
molecule tags Lyase
molecule keywords Pectate lyase
total genus 158
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2o0vA00
5AMVA 1RWRA 3GQ8A 4U4BA 1KCDA 4XM3A 3GQAA 1O88A 3T9GA 3ZPPA 4OJ6A 3GQ7A 3VSTA 1NHCA 4YZQA 1O8MA 1OFMA 4XLAA 3WWGA 4XONA 3B4NA 4XLHA 4Z06A 5C1EA 4XKWA 1IDJA 2X6WA 4OJOA 1O8JA 3ZSCA 4YZAA 4W8RA 4MR0A 4XLCA 1O8HA 2ODLA 1CZFA 2NTPA 4XLEA 2IQ7A 4OZZA 1JRGA 3UW0A 2O04A 2QX3A 4HWVA 3B8YA 2UVFA 1H80A 3KRGA 4XR6A 4OJLA 2UVEA 1EE6A 1OGOX 1OFLA 1AIRA 4Z05A 4EW9A 3JURA 2VJJA 2NSPA 4Z03A 1KTWA 4XL9A 3B90A 1XG2A 1PXZA 1WMRA 1VBLA 1GQ8A 1PLUA 4XOPA 1RU4A 2INUA 3GQ9A 3EQNA 2X6YA 2X6XA 3VMVA 2O17A 3FY3A 3VMWA 1O8KA 4XLFA 2VBMA 4XN3A 4XN0A 2X85A 1O8FA 4PMHA 2VBEA 4OJPA 2VBKA 2PYHA 2Z8GA 4I84A 1O8IA 1PE9A 1OOCA 1HG8A 1X0CA 1QCXA 1O8LA 2NT9A 2NZMA 1O8GA 3SUCA 2NTQA 2VJIA 1IA5A 1OGMX 4YEJA 1BHEA 2NT6A 3GRHA 4XKVA 1RMGA 1O8EA 3VSUA 2O1DA 4YZXA 4W8QA 1DBGA 2EWEA 2X3HA 3EQOA 4U49A 4XOTA 1O8DA 4C2LA 2INVA 2O0VA 1QJVA 4XNFA 4NK6A 4YZ0A 4YELA 2QY1A 4XORA 1JTAA 1IDKA 4W8TA 1BN8A 5C1CA 1K5CA 4OJ5A 2NTBA 4AVZA 1KCCA 2O0WA 4W8SA 3LMWA 4OZYA 4XQFA 2PYGA 3VSVA 4XMYA 4URRA 2PECA 4NK8A 2QXZA 4MXNA 2NSTA 1IB4A 1DBOA 2BSPA
chains in the Genus database with same CATH superfamily
5AMVA 1RWRA 3GQ8A 4U4BA 1KCDA 4XM3A 3GQAA 1O88A 3T9GA 1QRCA 3ZPPA 4OJ6A 3GQ7A 3VSTA 1NHCA 4YZQA 1O8MA 2BM6A 1OFMA 3NAWA 2VFQA 4XLAA 3SZEA 3WWGA 3TH0A 4XONA 3B4NA 4XLHA 4Z06A 3DU1X 5C1EA 4XKWA 1IDJA 2G0YA 1QA3A 2X6WA 2O6WA 4OJOA 2VFOA 1O8JA 3ZSCA 4YZAA 1KQ5A 3ML3A 4MR0A 4W8RA 2W7ZA 1O8HA 2ODLA 4XLCA 1CZFA 2NTPA 2J8KA 4KH3A 4XLEA 2IQ7A 1EA0A 4OZZA 1JRGA 3UW0A 2O04A 2QX3A 2V5IA 2XTYA 3NB2A 4HWVA 1EZGA 3B8YA 2UVFA 3N90A 4YCQA 1H80A 2BM7A 1LLWA 3KRGA 4YC5A 1K8FA 4OJLA 4XR6A 5JMCB 2UVEA 3AK5A 1EE6A 1OGOX 1OFLA 1AIRA 3BH7B 4Z05A 3JURA 4OM9A 2VJJA 4EW9A 2NSPA 4Z03A 1QRBA 1KTWA 1TYUA 4XL9A 1TYWA 3B90A 1OFDA 2XC1A 1XG2A 1TYVA 3JX8A 1PXZA 1WMRA 1VBLA 2QZAA 1LLZA 1GQ8A 1PLUA 4XOPA 1RU4A 2INUA 3GQ9A 4JRAC 3EQNA 2X6YA 2X6XA 5DNSA 3SQVA 2O17A 3VMVA 3FY3A 3VMWA 3PETA 2F3LA 1O8KA 4XLFA 2VBMA 2XTXA 4XN3A 1CLWA 2X85A 1O8FA 4XN0A 1QA2A 1TYXA 4PMHA 1TSPA 2VBEA 4OJPA 2VBKA 4OPWA 2PYHA 2Z8GA 4I84A 1O8IA 3PSSA 4YFOA 2QYUA 5JLVC 1PE9A 2XT4A 1OOCA 3P4GA 1IB4A 1HG8A 1X0CA 2NT9A 1QCXA 1O8LA 2NZMA 1O8GA 3SUCA 3N6ZA 1WXRA 2NTQA 4YEIA 1LM1A 2B0RA 2VJIA 1IA5A 1OGMX 4YEJA 1BHEA 3H09A 3RIQA 1OFEA 2NT6A 3GRHA 1RMGA 1O8EA 4XKVA 3VSUA 2O1DA 4V02C 4W8QA 4YZXA 2VFPA 1DBGA 3SY2A 2YUHA 2EWEA 2X3HA 3EQOA 4U49A 2VFMA 4XOTA 1O8DA 4C2LA 2INVA 1L1IA 2O0VA 1HF2A 3LJYA 1QJVA 4XNFA 4NK6A 4YZ0A 1K4ZA 4YDTA 4YELA 2QY1A 3LYCA 4XORA 1JTAA 1IDKA 2XT2A 1BN8A 4W8TA 5C1CA 1DABA 1K5CA 2BM4A 2J8IA 2VFNA 2XTWA 4OJ5A 2NTBA 3SYJA 2BM5A 4AVZA 1KCCA 2O0WA 4W8SA 3BH6B 3LMWA 4OZYA 1QQ1A 4XQFA 3PSZA 2PYGA 3VSVA 4XMYA 4URRA 2PECA 4NK8A 1QA1A 2BX6A 2QXZA 4MXNA 2NSTA 2IOUG 1DBOA 2BSPA
chains in the Genus database with same CATH topology
5AMVA 1RWRA 3GQ8A 4U4BA 1KCDA 4XM3A 3GQAA 1O88A 3T9GA 3ZPPA 4OJ6A 3GQ7A 3VSTA 1NHCA 4YZQA 1O8MA 1OFMA 4XLAA 3WWGA 4XONA 3B4NA 4XLHA 4Z06A 5C1EA 4XKWA 1IDJA 2X6WA 4OJOA 1O8JA 3ZSCA 4YZAA 4W8RA 4MR0A 4XLCA 1O8HA 2ODLA 1CZFA 2NTPA 4XLEA 2IQ7A 4OZZA 1JRGA 3UW0A 2O04A 2QX3A 4HWVA 3B8YA 2UVFA 1H80A 3KRGA 4XR6A 4OJLA 2UVEA 1EE6A 1OGOX 1OFLA 1AIRA 4Z05A 4EW9A 3JURA 2VJJA 2NSPA 4Z03A 1KTWA 4XL9A 3B90A 1XG2A 1PXZA 1WMRA 1VBLA 1GQ8A 1PLUA 4XOPA 1RU4A 2INUA 3GQ9A 3EQNA 2X6YA 2X6XA 3VMVA 2O17A 3FY3A 3VMWA 1O8KA 4XLFA 2VBMA 4XN3A 4XN0A 2X85A 1O8FA 4PMHA 2VBEA 4OJPA 2VBKA 2PYHA 2Z8GA 4I84A 1O8IA 1PE9A 1OOCA 1HG8A 1X0CA 1QCXA 1O8LA 2NT9A 2NZMA 1O8GA 3SUCA 2NTQA 2VJIA 1IA5A 1OGMX 4YEJA 1BHEA 2NT6A 3GRHA 4XKVA 1RMGA 1O8EA 3VSUA 2O1DA 4YZXA 4W8QA 1DBGA 2EWEA 2X3HA 3EQOA 4U49A 4XOTA 1O8DA 4C2LA 2INVA 2O0VA 1QJVA 4XNFA 4NK6A 4YZ0A 4YELA 2QY1A 4XORA 1JTAA 1IDKA 4W8TA 1BN8A 5C1CA 1K5CA 4OJ5A 2NTBA 4AVZA 1KCCA 2O0WA 4W8SA 3LMWA 4OZYA 4XQFA 2PYGA 3VSVA 4XMYA 4URRA 2PECA 4NK8A 2QXZA 4MXNA 2NSTA 1IB4A 1DBOA 2BSPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AMV A;  1RWR A;  3GQ8 A;  4U4B A;  1KCD A;  4XM3 A;  3GQA A;  1O88 A;  3T9G A;  3ZPP A;  4OJ6 A;  3GQ7 A;  3VST A;  1NHC A;  4YZQ A;  1O8M A;  1OFM A;  4XLA A;  3WWG A;  4XON A;  3B4N A;  4XLH A;  4Z06 A;  5C1E A;  4XKW A;  1IDJ A;  2X6W A;  4OJO A;  1O8J A;  3ZSC A;  4YZA A;  4W8R A;  4MR0 A;  4XLC A;  1O8H A;  2ODL A;  1CZF A;  2NTP A;  4XLE A;  2IQ7 A;  4OZZ A;  1JRG A;  3UW0 A;  2O04 A;  2QX3 A;  4HWV A;  3B8Y A;  2UVF A;  1H80 A;  3KRG A;  4XR6 A;  4OJL A;  2UVE A;  1EE6 A;  1OGO X;  1OFL A;  1AIR A;  4Z05 A;  4EW9 A;  3JUR A;  2VJJ A;  2NSP A;  4Z03 A;  1KTW A;  4XL9 A;  3B90 A;  1XG2 A;  1PXZ A;  1WMR A;  1VBL A;  1GQ8 A;  1PLU A;  4XOP A;  1RU4 A;  2INU A;  3GQ9 A;  3EQN A;  2X6Y A;  2X6X A;  3VMV A;  2O17 A;  3FY3 A;  3VMW A;  1O8K A;  4XLF A;  2VBM A;  4XN3 A;  4XN0 A;  2X85 A;  1O8F A;  4PMH A;  2VBE A;  4OJP A;  2VBK A;  2PYH A;  2Z8G A;  4I84 A;  1O8I A;  1PE9 A;  1OOC A;  1HG8 A;  1X0C A;  1QCX A;  1O8L A;  2NT9 A;  2NZM A;  1O8G A;  3SUC A;  2NTQ A;  2VJI A;  1IA5 A;  1OGM X;  4YEJ A;  1BHE A;  2NT6 A;  3GRH A;  4XKV A;  1RMG A;  1O8E A;  3VSU A;  2O1D A;  4YZX A;  4W8Q A;  1DBG A;  2EWE A;  2X3H A;  3EQO A;  4U49 A;  4XOT A;  1O8D A;  4C2L A;  2INV A;  2O0V A;  1QJV A;  4XNF A;  4NK6 A;  4YZ0 A;  4YEL A;  2QY1 A;  4XOR A;  1JTA A;  1IDK A;  4W8T A;  1BN8 A;  5C1C A;  1K5C A;  4OJ5 A;  2NTB A;  4AVZ A;  1KCC A;  2O0W A;  4W8S A;  3LMW A;  4OZY A;  4XQF A;  2PYG A;  3VSV A;  4XMY A;  4URR A;  2PEC A;  4NK8 A;  2QXZ A;  4MXN A;  2NST A;  1IB4 A;  1DBO A;  2BSP A; 
#chains in the Genus database with same CATH topology
 5AMV A;  1RWR A;  3GQ8 A;  4U4B A;  1KCD A;  4XM3 A;  3GQA A;  1O88 A;  3T9G A;  1QRC A;  3ZPP A;  4OJ6 A;  3GQ7 A;  3VST A;  1NHC A;  4YZQ A;  1O8M A;  2BM6 A;  1OFM A;  3NAW A;  2VFQ A;  4XLA A;  3SZE A;  3WWG A;  3TH0 A;  4XON A;  3B4N A;  4XLH A;  4Z06 A;  3DU1 X;  5C1E A;  4XKW A;  1IDJ A;  2G0Y A;  1QA3 A;  2X6W A;  2O6W A;  4OJO A;  2VFO A;  1O8J A;  3ZSC A;  4YZA A;  1KQ5 A;  3ML3 A;  4MR0 A;  4W8R A;  2W7Z A;  1O8H A;  2ODL A;  4XLC A;  1CZF A;  2NTP A;  2J8K A;  4KH3 A;  4XLE A;  2IQ7 A;  1EA0 A;  4OZZ A;  1JRG A;  3UW0 A;  2O04 A;  2QX3 A;  2V5I A;  2XTY A;  3NB2 A;  4HWV A;  1EZG A;  3B8Y A;  2UVF A;  3N90 A;  4YCQ A;  1H80 A;  2BM7 A;  1LLW A;  3KRG A;  4YC5 A;  1K8F A;  4OJL A;  4XR6 A;  5JMC B;  2UVE A;  3AK5 A;  1EE6 A;  1OGO X;  1OFL A;  1AIR A;  3BH7 B;  4Z05 A;  3JUR A;  4OM9 A;  2VJJ A;  4EW9 A;  2NSP A;  4Z03 A;  1QRB A;  1KTW A;  1TYU A;  4XL9 A;  1TYW A;  3B90 A;  1OFD A;  2XC1 A;  1XG2 A;  1TYV A;  3JX8 A;  1PXZ A;  1WMR A;  1VBL A;  2QZA A;  1LLZ A;  1GQ8 A;  1PLU A;  4XOP A;  1RU4 A;  2INU A;  3GQ9 A;  4JRA C;  3EQN A;  2X6Y A;  2X6X A;  5DNS A;  3SQV A;  2O17 A;  3VMV A;  3FY3 A;  3VMW A;  3PET A;  2F3L A;  1O8K A;  4XLF A;  2VBM A;  2XTX A;  4XN3 A;  1CLW A;  2X85 A;  1O8F A;  4XN0 A;  1QA2 A;  1TYX A;  4PMH A;  1TSP A;  2VBE A;  4OJP A;  2VBK A;  4OPW A;  2PYH A;  2Z8G A;  4I84 A;  1O8I A;  3PSS A;  4YFO A;  2QYU A;  5JLV C;  1PE9 A;  2XT4 A;  1OOC A;  3P4G A;  1IB4 A;  1HG8 A;  1X0C A;  2NT9 A;  1QCX A;  1O8L A;  2NZM A;  1O8G A;  3SUC A;  3N6Z A;  1WXR A;  2NTQ A;  4YEI A;  1LM1 A;  2B0R A;  2VJI A;  1IA5 A;  1OGM X;  4YEJ A;  1BHE A;  3H09 A;  3RIQ A;  1OFE A;  2NT6 A;  3GRH A;  1RMG A;  1O8E A;  4XKV A;  3VSU A;  2O1D A;  4V02 C;  4W8Q A;  4YZX A;  2VFP A;  1DBG A;  3SY2 A;  2YUH A;  2EWE A;  2X3H A;  3EQO A;  4U49 A;  2VFM A;  4XOT A;  1O8D A;  4C2L A;  2INV A;  1L1I A;  2O0V A;  1HF2 A;  3LJY A;  1QJV A;  4XNF A;  4NK6 A;  4YZ0 A;  1K4Z A;  4YDT A;  4YEL A;  2QY1 A;  3LYC A;  4XOR A;  1JTA A;  1IDK A;  2XT2 A;  1BN8 A;  4W8T A;  5C1C A;  1DAB A;  1K5C A;  2BM4 A;  2J8I A;  2VFN A;  2XTW A;  4OJ5 A;  2NTB A;  3SYJ A;  2BM5 A;  4AVZ A;  1KCC A;  2O0W A;  4W8S A;  3BH6 B;  3LMW A;  4OZY A;  1QQ1 A;  4XQF A;  3PSZ A;  2PYG A;  3VSV A;  4XMY A;  4URR A;  2PEC A;  4NK8 A;  1QA1 A;  2BX6 A;  2QXZ A;  4MXN A;  2NST A;  2IOU G;  1DBO A;  2BSP A; 
#chains in the Genus database with same CATH homology
 5AMV A;  1RWR A;  3GQ8 A;  4U4B A;  1KCD A;  4XM3 A;  3GQA A;  1O88 A;  3T9G A;  3ZPP A;  4OJ6 A;  3GQ7 A;  3VST A;  1NHC A;  4YZQ A;  1O8M A;  1OFM A;  4XLA A;  3WWG A;  4XON A;  3B4N A;  4XLH A;  4Z06 A;  5C1E A;  4XKW A;  1IDJ A;  2X6W A;  4OJO A;  1O8J A;  3ZSC A;  4YZA A;  4W8R A;  4MR0 A;  4XLC A;  1O8H A;  2ODL A;  1CZF A;  2NTP A;  4XLE A;  2IQ7 A;  4OZZ A;  1JRG A;  3UW0 A;  2O04 A;  2QX3 A;  4HWV A;  3B8Y A;  2UVF A;  1H80 A;  3KRG A;  4XR6 A;  4OJL A;  2UVE A;  1EE6 A;  1OGO X;  1OFL A;  1AIR A;  4Z05 A;  4EW9 A;  3JUR A;  2VJJ A;  2NSP A;  4Z03 A;  1KTW A;  4XL9 A;  3B90 A;  1XG2 A;  1PXZ A;  1WMR A;  1VBL A;  1GQ8 A;  1PLU A;  4XOP A;  1RU4 A;  2INU A;  3GQ9 A;  3EQN A;  2X6Y A;  2X6X A;  3VMV A;  2O17 A;  3FY3 A;  3VMW A;  1O8K A;  4XLF A;  2VBM A;  4XN3 A;  4XN0 A;  2X85 A;  1O8F A;  4PMH A;  2VBE A;  4OJP A;  2VBK A;  2PYH A;  2Z8G A;  4I84 A;  1O8I A;  1PE9 A;  1OOC A;  1HG8 A;  1X0C A;  1QCX A;  1O8L A;  2NT9 A;  2NZM A;  1O8G A;  3SUC A;  2NTQ A;  2VJI A;  1IA5 A;  1OGM X;  4YEJ A;  1BHE A;  2NT6 A;  3GRH A;  4XKV A;  1RMG A;  1O8E A;  3VSU A;  2O1D A;  4YZX A;  4W8Q A;  1DBG A;  2EWE A;  2X3H A;  3EQO A;  4U49 A;  4XOT A;  1O8D A;  4C2L A;  2INV A;  2O0V A;  1QJV A;  4XNF A;  4NK6 A;  4YZ0 A;  4YEL A;  2QY1 A;  4XOR A;  1JTA A;  1IDK A;  4W8T A;  1BN8 A;  5C1C A;  1K5C A;  4OJ5 A;  2NTB A;  4AVZ A;  1KCC A;  2O0W A;  4W8S A;  3LMW A;  4OZY A;  4XQF A;  2PYG A;  3VSV A;  4XMY A;  4URR A;  2PEC A;  4NK8 A;  2QXZ A;  4MXN A;  2NST A;  1IB4 A;  1DBO A;  2BSP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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