2O0VA

Pectate lyase bound to hexasaccharide compound iii
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
pubmed doi rcsb
source organism Bacillus subtilis
molecule tags Lyase
molecule keywords Pectate lyase
total genus 158
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2o0vA00
3VSUA 2ODLA 4OZYA 1O8IA 1O8DA 2UVEA 2O17A 4YZXA 3GQAA 3LMWA 2NT6A 2NSTA 4W8SA 2IQ7A 4YEJA 5AMVA 2X6YA 4HWVA 1PE9A 4NK8A 3VMWA 1BHEA 4XKVA 1O8GA 2UVFA 4W8QA 1OFMA 2O04A 2NTBA 2QX3A 1OOCA 3WWGA 4OZZA 1X0CA 3GQ8A 4XOTA 1IDJA 3UW0A 3T9GA 1OGOX 4OJLA 4W8RA 4YZ0A 1BN8A 1O8EA 3FY3A 2Z8GA 4NK6A 2PYHA 2X6WA 1JRGA 1GQ8A 2NTQA 4XLEA 2VBEA 1DBGA 2O0WA 1O8MA 4XLAA 4Z06A 2EWEA 1O8HA 1O8FA 2INVA 1QCXA 1XG2A 4YZAA 4Z05A 4U49A 4MR0A 3GQ9A 3B90A 4YELA 5C1CA 2NTPA 2VJIA 4EW9A 1DBOA 3ZSCA 4XM3A 1QJVA 4OJOA 5C1EA 1VBLA 2O1DA 4OJ6A 4PMHA 4URRA 1EE6A 2VJJA 1O8LA 4XLCA 1WMRA 2NSPA 4MXNA 4XLHA 4YZQA 2O0VA 1RU4A 3SUCA 2BSPA 3VSTA 1O8KA 4OJ5A 1PLUA 4XN0A 4XORA 1IB4A 4I84A 1CZFA 1OGMX 4AVZA 4XKWA 1RWRA 4XN3A 3JURA 3B8YA 2VBMA 1OFLA 1IA5A 1HG8A 1JTAA 3VSVA 2X85A 1KTWA 1O88A 1KCDA 1RMGA 2VBKA 3GRHA 4Z03A 2PYGA 4XQFA 3B4NA 4OJPA 4C2LA 2X3HA 1NHCA 4XMYA 4XONA 3VMVA 2X6XA 3KRGA 2NT9A 1O8JA 2INUA 1AIRA 2NZMA 4XL9A 1KCCA 3EQNA 1IDKA 4XLFA 2PECA 4XR6A 1PXZA 1H80A 3EQOA 2QXZA 4XNFA 4U4BA 2QY1A 4W8TA 3GQ7A 3ZPPA 1K5CA 4XOPA
chains in the Genus database with same CATH superfamily
3VSUA 2ODLA 4KH3A 4OZYA 1O8IA 1O8DA 2UVEA 2O17A 3PETA 4YZXA 3GQAA 3P4GA 3PSZA 1QA2A 4YC5A 3LMWA 2NT6A 1L1IA 1QRBA 2NSTA 2XT4A 4W8SA 2IQ7A 1TYXA 2BX6A 4YCQA 4YEJA 2BM7A 5AMVA 2X6YA 4OPWA 4HWVA 1PE9A 4NK8A 3VMWA 5JLVC 1BHEA 4XKVA 1O8GA 2UVFA 3H09A 4W8QA 1OFMA 2O04A 2NTBA 2QX3A 2QZAA 2BM6A 2XC1A 1OOCA 2J8IA 1TSPA 3WWGA 4OZZA 1QA1A 1X0CA 3GQ8A 4XOTA 4JRAC 2O6WA 1IDJA 3UW0A 3LJYA 3T9GA 1OGOX 4OJLA 4W8RA 4YZ0A 1BN8A 1O8EA 3FY3A 2Z8GA 1QRCA 4NK6A 2PYHA 2X6WA 4YEIA 1JRGA 1GQ8A 1OFEA 2NTQA 4XLEA 2VBEA 1DBGA 2O0WA 1O8MA 4XLAA 4Z06A 2EWEA 1KQ5A 1O8HA 1LLWA 3TH0A 1O8FA 1K4ZA 1OFDA 2INVA 3SYJA 1QCXA 1XG2A 3ML3A 1TYVA 4YZAA 4Z05A 4U49A 2VFMA 3GQ9A 3B90A 3N6ZA 4MR0A 4YELA 1QA3A 5C1CA 2F3LA 2G0YA 2NTPA 1EZGA 2VJIA 1DBOA 4YFOA 4EW9A 2BM5A 3ZSCA 4XM3A 1QJVA 4OJOA 5C1EA 2XTXA 1EA0A 1VBLA 2O1DA 4OJ6A 4PMHA 4URRA 1EE6A 1TYUA 2VJJA 1O8LA 4XLCA 2XT2A 1WMRA 2NSPA 4MXNA 4XLHA 4YZQA 2O0VA 1RU4A 3LYCA 2VFQA 3SQVA 3SUCA 2BSPA 2QYUA 3N90A 1O8KA 4OJ5A 3VSTA 2J8KA 1PLUA 3DU1X 4XN0A 4XORA 2W7ZA 3NAWA 1IB4A 2BM4A 3BH7B 4I84A 3ZPPA 5JMCB 1CZFA 1OGMX 4AVZA 4XKWA 1RWRA 4XN3A 3JURA 3NB2A 3B8YA 4YDTA 1QQ1A 2VFPA 4V02C 2VBMA 1OFLA 1WXRA 1IA5A 3SY2A 1HG8A 1JTAA 1DABA 3AK5A 3VSVA 2X85A 1KTWA 2XTYA 1O88A 2YUHA 1RMGA 1LLZA 2VBKA 3GRHA 2PYGA 4Z03A 4XQFA 1KCDA 3B4NA 4OJPA 4C2LA 1CLWA 2X3HA 1NHCA 4OM9A 4XMYA 4XONA 3VMVA 2X6XA 2B0RA 3JX8A 2VFOA 2NT9A 3KRGA 1O8JA 2INUA 2IOUG 2XTWA 3RIQA 3SZEA 3PSSA 1AIRA 2NZMA 1LM1A 4XL9A 3EQNA 1IDKA 4XLFA 2PECA 5DNSA 1KCCA 4XR6A 1PXZA 2VFNA 1HF2A 1H80A 3EQOA 2QXZA 4XNFA 4U4BA 2QY1A 3BH6B 3GQ7A 4W8TA 2V5IA 1K5CA 1K8FA 4XOPA 1TYWA
chains in the Genus database with same CATH topology
3VSUA 2ODLA 4OZYA 1O8IA 1O8DA 2UVEA 2O17A 4YZXA 3GQAA 3LMWA 2NT6A 2NSTA 4W8SA 2IQ7A 4YEJA 5AMVA 2X6YA 4HWVA 1PE9A 4NK8A 3VMWA 1BHEA 4XKVA 1O8GA 2UVFA 4W8QA 1OFMA 2O04A 2NTBA 2QX3A 1OOCA 3WWGA 4OZZA 1X0CA 3GQ8A 4XOTA 1IDJA 3UW0A 3T9GA 1OGOX 4OJLA 4W8RA 4YZ0A 1BN8A 1O8EA 3FY3A 2Z8GA 4NK6A 2PYHA 2X6WA 1JRGA 1GQ8A 2NTQA 4XLEA 2VBEA 1DBGA 2O0WA 1O8MA 4XLAA 4Z06A 2EWEA 1O8HA 1O8FA 2INVA 1QCXA 1XG2A 4YZAA 4Z05A 4U49A 4MR0A 3GQ9A 3B90A 4YELA 5C1CA 2NTPA 2VJIA 4EW9A 1DBOA 3ZSCA 4XM3A 1QJVA 4OJOA 5C1EA 1VBLA 2O1DA 4OJ6A 4PMHA 4URRA 1EE6A 2VJJA 1O8LA 4XLCA 1WMRA 2NSPA 4MXNA 4XLHA 4YZQA 2O0VA 1RU4A 3SUCA 2BSPA 3VSTA 1O8KA 4OJ5A 1PLUA 4XN0A 4XORA 1IB4A 4I84A 1CZFA 1OGMX 4AVZA 4XKWA 1RWRA 4XN3A 3JURA 3B8YA 2VBMA 1OFLA 1IA5A 1HG8A 1JTAA 3VSVA 2X85A 1KTWA 1O88A 1KCDA 1RMGA 2VBKA 3GRHA 4Z03A 2PYGA 4XQFA 3B4NA 4OJPA 4C2LA 2X3HA 1NHCA 4XMYA 4XONA 3VMVA 2X6XA 3KRGA 2NT9A 1O8JA 2INUA 1AIRA 2NZMA 4XL9A 1KCCA 3EQNA 1IDKA 4XLFA 2PECA 4XR6A 1PXZA 1H80A 3EQOA 2QXZA 4XNFA 4U4BA 2QY1A 4W8TA 3GQ7A 3ZPPA 1K5CA 4XOPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VSU A;  2ODL A;  4OZY A;  1O8I A;  1O8D A;  2UVE A;  2O17 A;  4YZX A;  3GQA A;  3LMW A;  2NT6 A;  2NST A;  4W8S A;  2IQ7 A;  4YEJ A;  5AMV A;  2X6Y A;  4HWV A;  1PE9 A;  4NK8 A;  3VMW A;  1BHE A;  4XKV A;  1O8G A;  2UVF A;  4W8Q A;  1OFM A;  2O04 A;  2NTB A;  2QX3 A;  1OOC A;  3WWG A;  4OZZ A;  1X0C A;  3GQ8 A;  4XOT A;  1IDJ A;  3UW0 A;  3T9G A;  1OGO X;  4OJL A;  4W8R A;  4YZ0 A;  1BN8 A;  1O8E A;  3FY3 A;  2Z8G A;  4NK6 A;  2PYH A;  2X6W A;  1JRG A;  1GQ8 A;  2NTQ A;  4XLE A;  2VBE A;  1DBG A;  2O0W A;  1O8M A;  4XLA A;  4Z06 A;  2EWE A;  1O8H A;  1O8F A;  2INV A;  1QCX A;  1XG2 A;  4YZA A;  4Z05 A;  4U49 A;  4MR0 A;  3GQ9 A;  3B90 A;  4YEL A;  5C1C A;  2NTP A;  2VJI A;  4EW9 A;  1DBO A;  3ZSC A;  4XM3 A;  1QJV A;  4OJO A;  5C1E A;  1VBL A;  2O1D A;  4OJ6 A;  4PMH A;  4URR A;  1EE6 A;  2VJJ A;  1O8L A;  4XLC A;  1WMR A;  2NSP A;  4MXN A;  4XLH A;  4YZQ A;  2O0V A;  1RU4 A;  3SUC A;  2BSP A;  3VST A;  1O8K A;  4OJ5 A;  1PLU A;  4XN0 A;  4XOR A;  1IB4 A;  4I84 A;  1CZF A;  1OGM X;  4AVZ A;  4XKW A;  1RWR A;  4XN3 A;  3JUR A;  3B8Y A;  2VBM A;  1OFL A;  1IA5 A;  1HG8 A;  1JTA A;  3VSV A;  2X85 A;  1KTW A;  1O88 A;  1KCD A;  1RMG A;  2VBK A;  3GRH A;  4Z03 A;  2PYG A;  4XQF A;  3B4N A;  4OJP A;  4C2L A;  2X3H A;  1NHC A;  4XMY A;  4XON A;  3VMV A;  2X6X A;  3KRG A;  2NT9 A;  1O8J A;  2INU A;  1AIR A;  2NZM A;  4XL9 A;  1KCC A;  3EQN A;  1IDK A;  4XLF A;  2PEC A;  4XR6 A;  1PXZ A;  1H80 A;  3EQO A;  2QXZ A;  4XNF A;  4U4B A;  2QY1 A;  4W8T A;  3GQ7 A;  3ZPP A;  1K5C A;  4XOP A; 
#chains in the Genus database with same CATH topology
 3VSU A;  2ODL A;  4KH3 A;  4OZY A;  1O8I A;  1O8D A;  2UVE A;  2O17 A;  3PET A;  4YZX A;  3GQA A;  3P4G A;  3PSZ A;  1QA2 A;  4YC5 A;  3LMW A;  2NT6 A;  1L1I A;  1QRB A;  2NST A;  2XT4 A;  4W8S A;  2IQ7 A;  1TYX A;  2BX6 A;  4YCQ A;  4YEJ A;  2BM7 A;  5AMV A;  2X6Y A;  4OPW A;  4HWV A;  1PE9 A;  4NK8 A;  3VMW A;  5JLV C;  1BHE A;  4XKV A;  1O8G A;  2UVF A;  3H09 A;  4W8Q A;  1OFM A;  2O04 A;  2NTB A;  2QX3 A;  2QZA A;  2BM6 A;  2XC1 A;  1OOC A;  2J8I A;  1TSP A;  3WWG A;  4OZZ A;  1QA1 A;  1X0C A;  3GQ8 A;  4XOT A;  4JRA C;  2O6W A;  1IDJ A;  3UW0 A;  3LJY A;  3T9G A;  1OGO X;  4OJL A;  4W8R A;  4YZ0 A;  1BN8 A;  1O8E A;  3FY3 A;  2Z8G A;  1QRC A;  4NK6 A;  2PYH A;  2X6W A;  4YEI A;  1JRG A;  1GQ8 A;  1OFE A;  2NTQ A;  4XLE A;  2VBE A;  1DBG A;  2O0W A;  1O8M A;  4XLA A;  4Z06 A;  2EWE A;  1KQ5 A;  1O8H A;  1LLW A;  3TH0 A;  1O8F A;  1K4Z A;  1OFD A;  2INV A;  3SYJ A;  1QCX A;  1XG2 A;  3ML3 A;  1TYV A;  4YZA A;  4Z05 A;  4U49 A;  2VFM A;  3GQ9 A;  3B90 A;  3N6Z A;  4MR0 A;  4YEL A;  1QA3 A;  5C1C A;  2F3L A;  2G0Y A;  2NTP A;  1EZG A;  2VJI A;  1DBO A;  4YFO A;  4EW9 A;  2BM5 A;  3ZSC A;  4XM3 A;  1QJV A;  4OJO A;  5C1E A;  2XTX A;  1EA0 A;  1VBL A;  2O1D A;  4OJ6 A;  4PMH A;  4URR A;  1EE6 A;  1TYU A;  2VJJ A;  1O8L A;  4XLC A;  2XT2 A;  1WMR A;  2NSP A;  4MXN A;  4XLH A;  4YZQ A;  2O0V A;  1RU4 A;  3LYC A;  2VFQ A;  3SQV A;  3SUC A;  2BSP A;  2QYU A;  3N90 A;  1O8K A;  4OJ5 A;  3VST A;  2J8K A;  1PLU A;  3DU1 X;  4XN0 A;  4XOR A;  2W7Z A;  3NAW A;  1IB4 A;  2BM4 A;  3BH7 B;  4I84 A;  3ZPP A;  5JMC B;  1CZF A;  1OGM X;  4AVZ A;  4XKW A;  1RWR A;  4XN3 A;  3JUR A;  3NB2 A;  3B8Y A;  4YDT A;  1QQ1 A;  2VFP A;  4V02 C;  2VBM A;  1OFL A;  1WXR A;  1IA5 A;  3SY2 A;  1HG8 A;  1JTA A;  1DAB A;  3AK5 A;  3VSV A;  2X85 A;  1KTW A;  2XTY A;  1O88 A;  2YUH A;  1RMG A;  1LLZ A;  2VBK A;  3GRH A;  2PYG A;  4Z03 A;  4XQF A;  1KCD A;  3B4N A;  4OJP A;  4C2L A;  1CLW A;  2X3H A;  1NHC A;  4OM9 A;  4XMY A;  4XON A;  3VMV A;  2X6X A;  2B0R A;  3JX8 A;  2VFO A;  2NT9 A;  3KRG A;  1O8J A;  2INU A;  2IOU G;  2XTW A;  3RIQ A;  3SZE A;  3PSS A;  1AIR A;  2NZM A;  1LM1 A;  4XL9 A;  3EQN A;  1IDK A;  4XLF A;  2PEC A;  5DNS A;  1KCC A;  4XR6 A;  1PXZ A;  2VFN A;  1HF2 A;  1H80 A;  3EQO A;  2QXZ A;  4XNF A;  4U4B A;  2QY1 A;  3BH6 B;  3GQ7 A;  4W8T A;  2V5I A;  1K5C A;  1K8F A;  4XOP A;  1TYW A; 
#chains in the Genus database with same CATH homology
 3VSU A;  2ODL A;  4OZY A;  1O8I A;  1O8D A;  2UVE A;  2O17 A;  4YZX A;  3GQA A;  3LMW A;  2NT6 A;  2NST A;  4W8S A;  2IQ7 A;  4YEJ A;  5AMV A;  2X6Y A;  4HWV A;  1PE9 A;  4NK8 A;  3VMW A;  1BHE A;  4XKV A;  1O8G A;  2UVF A;  4W8Q A;  1OFM A;  2O04 A;  2NTB A;  2QX3 A;  1OOC A;  3WWG A;  4OZZ A;  1X0C A;  3GQ8 A;  4XOT A;  1IDJ A;  3UW0 A;  3T9G A;  1OGO X;  4OJL A;  4W8R A;  4YZ0 A;  1BN8 A;  1O8E A;  3FY3 A;  2Z8G A;  4NK6 A;  2PYH A;  2X6W A;  1JRG A;  1GQ8 A;  2NTQ A;  4XLE A;  2VBE A;  1DBG A;  2O0W A;  1O8M A;  4XLA A;  4Z06 A;  2EWE A;  1O8H A;  1O8F A;  2INV A;  1QCX A;  1XG2 A;  4YZA A;  4Z05 A;  4U49 A;  4MR0 A;  3GQ9 A;  3B90 A;  4YEL A;  5C1C A;  2NTP A;  2VJI A;  4EW9 A;  1DBO A;  3ZSC A;  4XM3 A;  1QJV A;  4OJO A;  5C1E A;  1VBL A;  2O1D A;  4OJ6 A;  4PMH A;  4URR A;  1EE6 A;  2VJJ A;  1O8L A;  4XLC A;  1WMR A;  2NSP A;  4MXN A;  4XLH A;  4YZQ A;  2O0V A;  1RU4 A;  3SUC A;  2BSP A;  3VST A;  1O8K A;  4OJ5 A;  1PLU A;  4XN0 A;  4XOR A;  1IB4 A;  4I84 A;  1CZF A;  1OGM X;  4AVZ A;  4XKW A;  1RWR A;  4XN3 A;  3JUR A;  3B8Y A;  2VBM A;  1OFL A;  1IA5 A;  1HG8 A;  1JTA A;  3VSV A;  2X85 A;  1KTW A;  1O88 A;  1KCD A;  1RMG A;  2VBK A;  3GRH A;  4Z03 A;  2PYG A;  4XQF A;  3B4N A;  4OJP A;  4C2L A;  2X3H A;  1NHC A;  4XMY A;  4XON A;  3VMV A;  2X6X A;  3KRG A;  2NT9 A;  1O8J A;  2INU A;  1AIR A;  2NZM A;  4XL9 A;  1KCC A;  3EQN A;  1IDK A;  4XLF A;  2PEC A;  4XR6 A;  1PXZ A;  1H80 A;  3EQO A;  2QXZ A;  4XNF A;  4U4B A;  2QY1 A;  4W8T A;  3GQ7 A;  3ZPP A;  1K5C A;  4XOP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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