3EQOA

Crystal structure of beta-1,3-glucanase from phanerochaete chrysosporium (lam55a) gluconolactone complex
Total Genus 294
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
294
sequence length
752
structure length
752
Chain Sequence
LGSTCSSPLTHGSAAPGDPFWLQNIQHQGIAAFNGNPGGYPVFRNVKNYGAKGDGNTDDTAAIQAAINAGGRCGQGCDSTTTQPALVYFPPGTYKVSSPLVVLYQTQLIGDAKNLPTLLAAPNFSGIALIDADPYLAGGAQYYVNQNNFFRSVRNFVIDLRQVSGSATGIHWQVSQATSLINIVFQMSTAAGNQHQGIFMENGSGGFLGDLVFNGGNIGATFGNQQFTVRNLTFNNANTAINAIWNWGWTFQRITINNCQVGFDLTQGGTSNTGAQGVGAEAIIDAVVTNTQTFVRWSGASSGHLQGSLVLNNIQLTNVPVAVGVKGGPTVLAGGTTTINSWAQGNVYHGTNGNPTFTQGNIANINRPGVLLDSTGRIVSKSHPQYTGYAPSDFVSVRSQGAKGDGHTDDTQAIKNVFAKYAGCKIIFFDAGTYIVTDTIQIPAGTQIVGEVWSVIMGTGSKFTDYNNPQPVIQVGAPGSSGVVEITDMIFTTRGPAAGAIIVEWNVHDPSGQQAAAGAWDTHLIIGGTAQSGLQVGQCPTSGAGGNNCFADFLGLHLTSGSSAYLEGMWVWLADHDLDSGGSQQISLWSNGGIMSESQGPVWLIGTASEHHINYQYFLKNAANHYIGLAQTETPYFQPNPNPPAPFITNSNFDPSQLGQGDAWAMTVQNSHGILVFGAGFYSFFSAYNTGCQSPQNCQNQIVNVDSSSDIAFYSLTTVDTTWQFSVNAQGVINRSNNPNGFADTITAWTRN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Glucan 1,3-beta-glucosidase
publication title Crystal structure of glycoside hydrolase family 55 beta -1,3-glucanase from the basidiomycete Phanerochaete chrysosporium
pubmed doi rcsb
source organism Phanerochaete chrysosporium
molecule tags Hydrolase
total genus 294
structure length 752
sequence length 752
chains with identical sequence B
ec nomenclature ec 3.2.1.58: Glucan 1,3-beta-glucosidase.
pdb deposition date 2008-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12708 Pectate_lyase_3 Pectate lyase superfamily protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3eqoA02
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3eqoA01
1O8DA 2O0VA 2PECA 4YZQA 3GQ7A 1O8EA 1X0CA 3ZPPA 3T9GA 3B8YA 2X6XA 1KTWA 3VMWA 2O17A 1O8GA 1EE6A 1CZFA 2O04A 2NTQA 3KRGA 1PXZA 2NTBA 2QY1A 5C1EA 4XR6A 3VSUA 1VBLA 2X6YA 4XKWA 4XNFA 4XLFA 1RWRA 4XONA 1JTAA 1O8IA 2NTPA 4YZAA 1PLUA 4XLEA 1RU4A 1BHEA 4EW9A 1XG2A 4XLHA 2UVFA 3GQ9A 2VBKA 2VJIA 4U4BA 2VBEA 1KCCA 4Z03A 2PYGA 1GQ8A 2UVEA 5AMVA 2O1DA 2BSPA 4Z06A 4Z05A 4W8SA 3LMWA 1WMRA 1K5CA 4XORA 2INUA 3SUCA 3EQOA 4XOPA 1NHCA 1QJVA 4U49A 2EWEA 4YEJA 1PE9A 4XLAA 2X3HA 4MXNA 3VSTA 4I84A 4XOTA 4W8RA 4XN0A 4OJPA 2X6WA 2NZMA 1O8JA 4W8TA 4XQFA 1O8FA 1O88A 4YELA 1O8MA 3GQAA 3VMVA 3UW0A 1O8LA 1RMGA 1OFLA 4XLCA 4MR0A 2NSTA 2PYHA 3WWGA 3JURA 2VBMA 4NK6A 4XL9A 2NT9A 4OJ5A 1DBOA 4OZYA 2O0WA 3ZSCA 1OFMA 2NSPA 1IDKA 2Z8GA 4XM3A 1O8HA 1IB4A 4OJ6A 2INVA 4NK8A 2X85A 2IQ7A 2ODLA 1DBGA 3B4NA 2VJJA 1AIRA 2QXZA 4W8QA 1IDJA 1OGMX 1QCXA 4AVZA 1IA5A 2QX3A 4YZXA 4OJLA 4XMYA 3B90A 4URRA 3EQNA 4HWVA 4PMHA 1H80A 4OJOA 2NT6A 1JRGA 5C1CA 3VSVA 4YZ0A 1O8KA 3FY3A 3GRHA 4OZZA 3GQ8A 4XN3A 4C2LA 1KCDA 1OGOX 1OOCA 1HG8A 4XKVA 1BN8A
chains in the Genus database with same CATH superfamily
2XC1A 1O8DA 2O0VA 2PECA 3N6ZA 4YZQA 3GQ7A 1O8EA 1TSPA 1X0CA 1L1IA 3NB2A 2BM6A 3PSZA 3N90A 3ZPPA 3AK5A 3T9GA 3B8YA 2X6XA 1KTWA 3VMWA 1TYWA 2O17A 3BH6B 1O8GA 1EE6A 5DNSA 2BX6A 1CZFA 2O04A 3NAWA 2NTQA 2J8KA 1PXZA 2NTBA 2QY1A 3KRGA 5C1EA 2J8IA 4XR6A 1K8FA 3VSUA 1VBLA 2X6YA 4XKWA 1TYXA 4OM9A 3DU1X 2QYUA 3PETA 4XLFA 1RWRA 4XNFA 4XONA 1TYVA 1JTAA 1O8IA 2NTPA 3LJYA 1PLUA 3ML3A 4YZAA 4XLEA 2XTYA 1RU4A 1BHEA 2BM4A 1XG2A 4EW9A 4XLHA 2UVFA 4KH3A 2F3LA 3GQ9A 2VBKA 2VJIA 4YC5A 4U4BA 2VBEA 1KCCA 4Z03A 2PYGA 3TH0A 1GQ8A 2UVEA 5AMVA 2O1DA 1QA1A 2BSPA 2B0RA 4Z06A 4Z05A 1QRBA 4W8SA 3LMWA 1HF2A 1WMRA 4YEIA 1K5CA 4XORA 2VFNA 2INUA 3SUCA 3EQOA 4XOPA 1QRCA 1QA3A 1NHCA 1QJVA 4U49A 2EWEA 3SZEA 2QZAA 4YEJA 2V5IA 3H09A 1PE9A 1OFDA 2XTWA 2X3HA 4XLAA 4MXNA 3VSTA 4YDTA 4I84A 3SY2A 1LLZA 4W8RA 4XOTA 4XN0A 4OJPA 2X6WA 2NZMA 3LYCA 3P4GA 4YFOA 1O8JA 2VFMA 4W8TA 4XQFA 1EZGA 1O8FA 1O88A 2W7ZA 4YELA 1DABA 4OPWA 1O8MA 3GQAA 3VMVA 3UW0A 1O8LA 1RMGA 1OFLA 1QQ1A 4XLCA 4MR0A 2NSTA 2PYHA 2XT4A 3JURA 2VBMA 4NK6A 2XT2A 2IOUG 2NT9A 4OJ5A 1DBOA 4XL9A 1LLWA 2VFQA 4OZYA 2O0WA 1CLWA 2G0YA 3ZSCA 1OFMA 2NSPA 1IDKA 2Z8GA 4XM3A 1O8HA 2YUHA 1IB4A 1EA0A 4OJ6A 5JMCB 3JX8A 2INVA 4NK8A 4V02C 2X85A 1KQ5A 2IQ7A 4YCQA 3WWGA 2ODLA 1DBGA 3B4NA 2VJJA 1OFEA 1AIRA 3SQVA 2QXZA 1IA5A 4JRAC 4W8QA 1IDJA 1OGMX 1QCXA 1LM1A 2BM7A 2QX3A 4XKVA 2XTXA 4YZXA 4AVZA 4OJLA 4XMYA 2BM5A 3B90A 1TYUA 3BH7B 3EQNA 4URRA 1QA2A 1WXRA 5JLVC 4HWVA 4PMHA 1H80A 4OJOA 2VFPA 3SYJA 2NT6A 1JRGA 5C1CA 3VSVA 4YZ0A 1K4ZA 3PSSA 1O8KA 3FY3A 3GRHA 4OZZA 3GQ8A 4XN3A 4C2LA 3RIQA 1KCDA 1OGOX 1OOCA 1HG8A 2VFOA 1BN8A 2O6WA
chains in the Genus database with same CATH topology
1O8DA 2O0VA 2PECA 4YZQA 3GQ7A 1O8EA 1X0CA 3ZPPA 3T9GA 3B8YA 2X6XA 1KTWA 3VMWA 2O17A 1O8GA 1EE6A 1CZFA 2O04A 2NTQA 3KRGA 1PXZA 2NTBA 2QY1A 5C1EA 4XR6A 3VSUA 1VBLA 2X6YA 4XKWA 4XNFA 4XLFA 1RWRA 4XONA 1JTAA 1O8IA 2NTPA 4YZAA 1PLUA 4XLEA 1RU4A 1BHEA 4EW9A 1XG2A 4XLHA 2UVFA 3GQ9A 2VBKA 2VJIA 4U4BA 2VBEA 1KCCA 4Z03A 2PYGA 1GQ8A 2UVEA 5AMVA 2O1DA 2BSPA 4Z06A 4Z05A 4W8SA 3LMWA 1WMRA 1K5CA 4XORA 2INUA 3SUCA 3EQOA 4XOPA 1NHCA 1QJVA 4U49A 2EWEA 4YEJA 1PE9A 4XLAA 2X3HA 4MXNA 3VSTA 4I84A 4XOTA 4W8RA 4XN0A 4OJPA 2X6WA 2NZMA 1O8JA 4W8TA 4XQFA 1O8FA 1O88A 4YELA 1O8MA 3GQAA 3VMVA 3UW0A 1O8LA 1RMGA 1OFLA 4XLCA 4MR0A 2NSTA 2PYHA 3WWGA 3JURA 2VBMA 4NK6A 4XL9A 2NT9A 4OJ5A 1DBOA 4OZYA 2O0WA 3ZSCA 1OFMA 2NSPA 1IDKA 2Z8GA 4XM3A 1O8HA 1IB4A 4OJ6A 2INVA 4NK8A 2X85A 2IQ7A 2ODLA 1DBGA 3B4NA 2VJJA 1AIRA 2QXZA 4W8QA 1IDJA 1OGMX 1QCXA 4AVZA 1IA5A 2QX3A 4YZXA 4OJLA 4XMYA 3B90A 4URRA 3EQNA 4HWVA 4PMHA 1H80A 4OJOA 2NT6A 1JRGA 5C1CA 3VSVA 4YZ0A 1O8KA 3FY3A 3GRHA 4OZZA 3GQ8A 4XN3A 4C2LA 1KCDA 1OGOX 1OOCA 1HG8A 4XKVA 1BN8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O8D A;  2O0V A;  2PEC A;  4YZQ A;  3GQ7 A;  1O8E A;  1X0C A;  3ZPP A;  3T9G A;  3B8Y A;  2X6X A;  1KTW A;  3VMW A;  2O17 A;  1O8G A;  1EE6 A;  1CZF A;  2O04 A;  2NTQ A;  3KRG A;  1PXZ A;  2NTB A;  2QY1 A;  5C1E A;  4XR6 A;  3VSU A;  1VBL A;  2X6Y A;  4XKW A;  4XNF A;  4XLF A;  1RWR A;  4XON A;  1JTA A;  1O8I A;  2NTP A;  4YZA A;  1PLU A;  4XLE A;  1RU4 A;  1BHE A;  4EW9 A;  1XG2 A;  4XLH A;  2UVF A;  3GQ9 A;  2VBK A;  2VJI A;  4U4B A;  2VBE A;  1KCC A;  4Z03 A;  2PYG A;  1GQ8 A;  2UVE A;  5AMV A;  2O1D A;  2BSP A;  4Z06 A;  4Z05 A;  4W8S A;  3LMW A;  1WMR A;  1K5C A;  4XOR A;  2INU A;  3SUC A;  3EQO A;  4XOP A;  1NHC A;  1QJV A;  4U49 A;  2EWE A;  4YEJ A;  1PE9 A;  4XLA A;  2X3H A;  4MXN A;  3VST A;  4I84 A;  4XOT A;  4W8R A;  4XN0 A;  4OJP A;  2X6W A;  2NZM A;  1O8J A;  4W8T A;  4XQF A;  1O8F A;  1O88 A;  4YEL A;  1O8M A;  3GQA A;  3VMV A;  3UW0 A;  1O8L A;  1RMG A;  1OFL A;  4XLC A;  4MR0 A;  2NST A;  2PYH A;  3WWG A;  3JUR A;  2VBM A;  4NK6 A;  4XL9 A;  2NT9 A;  4OJ5 A;  1DBO A;  4OZY A;  2O0W A;  3ZSC A;  1OFM A;  2NSP A;  1IDK A;  2Z8G A;  4XM3 A;  1O8H A;  1IB4 A;  4OJ6 A;  2INV A;  4NK8 A;  2X85 A;  2IQ7 A;  2ODL A;  1DBG A;  3B4N A;  2VJJ A;  1AIR A;  2QXZ A;  4W8Q A;  1IDJ A;  1OGM X;  1QCX A;  4AVZ A;  1IA5 A;  2QX3 A;  4YZX A;  4OJL A;  4XMY A;  3B90 A;  4URR A;  3EQN A;  4HWV A;  4PMH A;  1H80 A;  4OJO A;  2NT6 A;  1JRG A;  5C1C A;  3VSV A;  4YZ0 A;  1O8K A;  3FY3 A;  3GRH A;  4OZZ A;  3GQ8 A;  4XN3 A;  4C2L A;  1KCD A;  1OGO X;  1OOC A;  1HG8 A;  4XKV A;  1BN8 A; 
#chains in the Genus database with same CATH topology
 2XC1 A;  1O8D A;  2O0V A;  2PEC A;  3N6Z A;  4YZQ A;  3GQ7 A;  1O8E A;  1TSP A;  1X0C A;  1L1I A;  3NB2 A;  2BM6 A;  3PSZ A;  3N90 A;  3ZPP A;  3AK5 A;  3T9G A;  3B8Y A;  2X6X A;  1KTW A;  3VMW A;  1TYW A;  2O17 A;  3BH6 B;  1O8G A;  1EE6 A;  5DNS A;  2BX6 A;  1CZF A;  2O04 A;  3NAW A;  2NTQ A;  2J8K A;  1PXZ A;  2NTB A;  2QY1 A;  3KRG A;  5C1E A;  2J8I A;  4XR6 A;  1K8F A;  3VSU A;  1VBL A;  2X6Y A;  4XKW A;  1TYX A;  4OM9 A;  3DU1 X;  2QYU A;  3PET A;  4XLF A;  1RWR A;  4XNF A;  4XON A;  1TYV A;  1JTA A;  1O8I A;  2NTP A;  3LJY A;  1PLU A;  3ML3 A;  4YZA A;  4XLE A;  2XTY A;  1RU4 A;  1BHE A;  2BM4 A;  1XG2 A;  4EW9 A;  4XLH A;  2UVF A;  4KH3 A;  2F3L A;  3GQ9 A;  2VBK A;  2VJI A;  4YC5 A;  4U4B A;  2VBE A;  1KCC A;  4Z03 A;  2PYG A;  3TH0 A;  1GQ8 A;  2UVE A;  5AMV A;  2O1D A;  1QA1 A;  2BSP A;  2B0R A;  4Z06 A;  4Z05 A;  1QRB A;  4W8S A;  3LMW A;  1HF2 A;  1WMR A;  4YEI A;  1K5C A;  4XOR A;  2VFN A;  2INU A;  3SUC A;  3EQO A;  4XOP A;  1QRC A;  1QA3 A;  1NHC A;  1QJV A;  4U49 A;  2EWE A;  3SZE A;  2QZA A;  4YEJ A;  2V5I A;  3H09 A;  1PE9 A;  1OFD A;  2XTW A;  2X3H A;  4XLA A;  4MXN A;  3VST A;  4YDT A;  4I84 A;  3SY2 A;  1LLZ A;  4W8R A;  4XOT A;  4XN0 A;  4OJP A;  2X6W A;  2NZM A;  3LYC A;  3P4G A;  4YFO A;  1O8J A;  2VFM A;  4W8T A;  4XQF A;  1EZG A;  1O8F A;  1O88 A;  2W7Z A;  4YEL A;  1DAB A;  4OPW A;  1O8M A;  3GQA A;  3VMV A;  3UW0 A;  1O8L A;  1RMG A;  1OFL A;  1QQ1 A;  4XLC A;  4MR0 A;  2NST A;  2PYH A;  2XT4 A;  3JUR A;  2VBM A;  4NK6 A;  2XT2 A;  2IOU G;  2NT9 A;  4OJ5 A;  1DBO A;  4XL9 A;  1LLW A;  2VFQ A;  4OZY A;  2O0W A;  1CLW A;  2G0Y A;  3ZSC A;  1OFM A;  2NSP A;  1IDK A;  2Z8G A;  4XM3 A;  1O8H A;  2YUH A;  1IB4 A;  1EA0 A;  4OJ6 A;  5JMC B;  3JX8 A;  2INV A;  4NK8 A;  4V02 C;  2X85 A;  1KQ5 A;  2IQ7 A;  4YCQ A;  3WWG A;  2ODL A;  1DBG A;  3B4N A;  2VJJ A;  1OFE A;  1AIR A;  3SQV A;  2QXZ A;  1IA5 A;  4JRA C;  4W8Q A;  1IDJ A;  1OGM X;  1QCX A;  1LM1 A;  2BM7 A;  2QX3 A;  4XKV A;  2XTX A;  4YZX A;  4AVZ A;  4OJL A;  4XMY A;  2BM5 A;  3B90 A;  1TYU A;  3BH7 B;  3EQN A;  4URR A;  1QA2 A;  1WXR A;  5JLV C;  4HWV A;  4PMH A;  1H80 A;  4OJO A;  2VFP A;  3SYJ A;  2NT6 A;  1JRG A;  5C1C A;  3VSV A;  4YZ0 A;  1K4Z A;  3PSS A;  1O8K A;  3FY3 A;  3GRH A;  4OZZ A;  3GQ8 A;  4XN3 A;  4C2L A;  3RIQ A;  1KCD A;  1OGO X;  1OOC A;  1HG8 A;  2VFO A;  1BN8 A;  2O6W A; 
#chains in the Genus database with same CATH homology
 1O8D A;  2O0V A;  2PEC A;  4YZQ A;  3GQ7 A;  1O8E A;  1X0C A;  3ZPP A;  3T9G A;  3B8Y A;  2X6X A;  1KTW A;  3VMW A;  2O17 A;  1O8G A;  1EE6 A;  1CZF A;  2O04 A;  2NTQ A;  3KRG A;  1PXZ A;  2NTB A;  2QY1 A;  5C1E A;  4XR6 A;  3VSU A;  1VBL A;  2X6Y A;  4XKW A;  4XNF A;  4XLF A;  1RWR A;  4XON A;  1JTA A;  1O8I A;  2NTP A;  4YZA A;  1PLU A;  4XLE A;  1RU4 A;  1BHE A;  4EW9 A;  1XG2 A;  4XLH A;  2UVF A;  3GQ9 A;  2VBK A;  2VJI A;  4U4B A;  2VBE A;  1KCC A;  4Z03 A;  2PYG A;  1GQ8 A;  2UVE A;  5AMV A;  2O1D A;  2BSP A;  4Z06 A;  4Z05 A;  4W8S A;  3LMW A;  1WMR A;  1K5C A;  4XOR A;  2INU A;  3SUC A;  3EQO A;  4XOP A;  1NHC A;  1QJV A;  4U49 A;  2EWE A;  4YEJ A;  1PE9 A;  4XLA A;  2X3H A;  4MXN A;  3VST A;  4I84 A;  4XOT A;  4W8R A;  4XN0 A;  4OJP A;  2X6W A;  2NZM A;  1O8J A;  4W8T A;  4XQF A;  1O8F A;  1O88 A;  4YEL A;  1O8M A;  3GQA A;  3VMV A;  3UW0 A;  1O8L A;  1RMG A;  1OFL A;  4XLC A;  4MR0 A;  2NST A;  2PYH A;  3WWG A;  3JUR A;  2VBM A;  4NK6 A;  4XL9 A;  2NT9 A;  4OJ5 A;  1DBO A;  4OZY A;  2O0W A;  3ZSC A;  1OFM A;  2NSP A;  1IDK A;  2Z8G A;  4XM3 A;  1O8H A;  1IB4 A;  4OJ6 A;  2INV A;  4NK8 A;  2X85 A;  2IQ7 A;  2ODL A;  1DBG A;  3B4N A;  2VJJ A;  1AIR A;  2QXZ A;  4W8Q A;  1IDJ A;  1OGM X;  1QCX A;  4AVZ A;  1IA5 A;  2QX3 A;  4YZX A;  4OJL A;  4XMY A;  3B90 A;  4URR A;  3EQN A;  4HWV A;  4PMH A;  1H80 A;  4OJO A;  2NT6 A;  1JRG A;  5C1C A;  3VSV A;  4YZ0 A;  1O8K A;  3FY3 A;  3GRH A;  4OZZ A;  3GQ8 A;  4XN3 A;  4C2L A;  1KCD A;  1OGO X;  1OOC A;  1HG8 A;  4XKV A;  1BN8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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