3EQOA

Crystal structure of beta-1,3-glucanase from phanerochaete chrysosporium (lam55a) gluconolactone complex
Total Genus 294
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
294
sequence length
752
structure length
752
Chain Sequence
LGSTCSSPLTHGSAAPGDPFWLQNIQHQGIAAFNGNPGGYPVFRNVKNYGAKGDGNTDDTAAIQAAINAGGRCGQGCDSTTTQPALVYFPPGTYKVSSPLVVLYQTQLIGDAKNLPTLLAAPNFSGIALIDADPYLAGGAQYYVNQNNFFRSVRNFVIDLRQVSGSATGIHWQVSQATSLINIVFQMSTAAGNQHQGIFMENGSGGFLGDLVFNGGNIGATFGNQQFTVRNLTFNNANTAINAIWNWGWTFQRITINNCQVGFDLTQGGTSNTGAQGVGAEAIIDAVVTNTQTFVRWSGASSGHLQGSLVLNNIQLTNVPVAVGVKGGPTVLAGGTTTINSWAQGNVYHGTNGNPTFTQGNIANINRPGVLLDSTGRIVSKSHPQYTGYAPSDFVSVRSQGAKGDGHTDDTQAIKNVFAKYAGCKIIFFDAGTYIVTDTIQIPAGTQIVGEVWSVIMGTGSKFTDYNNPQPVIQVGAPGSSGVVEITDMIFTTRGPAAGAIIVEWNVHDPSGQQAAAGAWDTHLIIGGTAQSGLQVGQCPTSGAGGNNCFADFLGLHLTSGSSAYLEGMWVWLADHDLDSGGSQQISLWSNGGIMSESQGPVWLIGTASEHHINYQYFLKNAANHYIGLAQTETPYFQPNPNPPAPFITNSNFDPSQLGQGDAWAMTVQNSHGILVFGAGFYSFFSAYNTGCQSPQNCQNQIVNVDSSSDIAFYSLTTVDTTWQFSVNAQGVINRSNNPNGFADTITAWTRN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of glycoside hydrolase family 55 beta -1,3-glucanase from the basidiomycete Phanerochaete chrysosporium
pubmed doi rcsb
source organism Phanerochaete chrysosporium
molecule tags Hydrolase
molecule keywords Glucan 1,3-beta-glucosidase
total genus 294
structure length 752
sequence length 752
chains with identical sequence B
ec nomenclature ec 3.2.1.58: Glucan 1,3-beta-glucosidase.
pdb deposition date 2008-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12708 Pectate_lyase_3 Pectate lyase superfamily protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3eqoA02
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3eqoA01
1O8FA 1O8LA 4AVZA 5C1EA 3VMVA 2O1DA 3EQOA 4OJ5A 1PXZA 1KTWA 2INUA 1QJVA 1XG2A 1HG8A 1BN8A 2VBEA 1WMRA 1GQ8A 1IA5A 4W8SA 4NK6A 3LMWA 5C1CA 2INVA 2PECA 4XN0A 1CZFA 4C2LA 3GRHA 2VJJA 1OGMX 2NZMA 2NSTA 3UW0A 3JURA 3WWGA 2Z8GA 2UVFA 5AMVA 4W8RA 3GQ8A 4XOPA 2VBKA 1O8EA 4OJOA 4YZAA 1JTAA 2VBMA 4HWVA 4U4BA 4XNFA 2X6YA 4YEJA 2VJIA 2QX3A 4XL9A 2PYGA 3EQNA 4OZZA 4XQFA 1O8JA 4U49A 4EW9A 4PMHA 4XKWA 4Z03A 2O0WA 2NT9A 1DBGA 3GQAA 4XLEA 2QXZA 2X85A 2O17A 1IDJA 4XOTA 2X6XA 3ZSCA 2NTQA 1QCXA 2UVEA 4XLAA 1EE6A 4YELA 2NTBA 1DBOA 2NTPA 4NK8A 3VSVA 2ODLA 1O8IA 4Z06A 1RMGA 1IDKA 2EWEA 1OFLA 4XM3A 1JRGA 1RWRA 3GQ7A 4Z05A 3FY3A 4XLCA 4OJLA 1IB4A 2X3HA 2IQ7A 3B90A 3KRGA 1RU4A 1BHEA 1O8MA 2QY1A 1OGOX 1OOCA 3SUCA 3T9GA 1O8KA 4YZ0A 2NT6A 1OFMA 4XN3A 4XLFA 4XORA 4W8TA 1VBLA 1O8GA 2O04A 4XKVA 1O88A 3B8YA 1NHCA 4XONA 3VSUA 3B4NA 4YZQA 1PE9A 4I84A 1X0CA 2NSPA 3VSTA 1KCCA 4MXNA 3GQ9A 1O8HA 4OZYA 4OJ6A 1K5CA 1PLUA 4XLHA 3ZPPA 2BSPA 4XR6A 2O0VA 1O8DA 4YZXA 1H80A 4OJPA 4MR0A 3VMWA 4XMYA 1KCDA 1AIRA 2X6WA 4W8QA 2PYHA 4URRA
chains in the Genus database with same CATH superfamily
3ML3A 1O8FA 2VFQA 3P4GA 1O8LA 4AVZA 3BH7B 3PSSA 5C1EA 3VMVA 2XT2A 2O1DA 1CLWA 3EQOA 4OJ5A 3SZEA 1PXZA 1KTWA 2INUA 1QJVA 1XG2A 1HG8A 2V5IA 1BN8A 2VBEA 1WMRA 2IOUG 1DABA 4YCQA 1GQ8A 1K4ZA 1IA5A 4W8SA 4NK6A 3LMWA 3TH0A 1TYWA 5C1CA 2INVA 1WXRA 2BM4A 2PECA 1TSPA 4XN0A 1CZFA 4C2LA 2VFMA 3GRHA 2VJJA 1OGMX 2NZMA 2W7ZA 2NSTA 1QRCA 2XT4A 3UW0A 3JURA 3WWGA 2UVFA 2Z8GA 5AMVA 4W8RA 3GQ8A 4XOPA 2VBKA 4V02C 1O8EA 4OJOA 4YZAA 1JTAA 1QA3A 2VBMA 4HWVA 5JMCB 3AK5A 2XTWA 4JRAC 4U4BA 4XNFA 2X6YA 4YEJA 2VJIA 2QX3A 4XL9A 2PYGA 3EQNA 4OZZA 4YFOA 4XQFA 2YUHA 1O8JA 4U49A 1OFEA 4EW9A 4PMHA 2BX6A 2VFOA 4XKWA 4Z03A 1OFDA 2B0RA 2O0WA 2NT9A 1DBGA 3GQAA 4XLEA 1HF2A 4KH3A 3JX8A 4OM9A 1TYXA 3NB2A 2QXZA 2X85A 2O17A 1IDJA 4XOTA 2X6XA 1QQ1A 2VFNA 2XC1A 3ZSCA 2NTQA 1QCXA 2UVEA 4XLAA 1QA2A 1EE6A 1LM1A 2NTBA 3DU1X 1DBOA 2NTPA 4YELA 4NK8A 3VSVA 1TYVA 2ODLA 1O8IA 4Z06A 1RMGA 1IDKA 2EWEA 1OFLA 4XM3A 1JRGA 1RWRA 4YEIA 1TYUA 3GQ7A 4Z05A 1KQ5A 3FY3A 3LYCA 4XLCA 2O6WA 4OJLA 1IB4A 1QRBA 2X3HA 2IQ7A 2G0YA 2J8KA 3B90A 3N90A 3KRGA 3RIQA 3BH6B 1RU4A 1BHEA 1O8MA 2QY1A 1OGOX 1OOCA 3LJYA 4YDTA 3SUCA 1O8KA 3T9GA 4YZ0A 1K8FA 2NT6A 1OFMA 2BM6A 4XLFA 4XN3A 4XORA 4W8TA 3N6ZA 5DNSA 1VBLA 1O8GA 2O04A 4XKVA 1O88A 3SYJA 3B8YA 1NHCA 4XONA 2BM7A 3PSZA 1LLWA 5JLVC 3VSUA 3B4NA 2F3LA 1PE9A 4YZQA 4I84A 1X0CA 4OPWA 3H09A 2NSPA 3VSTA 1KCCA 4MXNA 3GQ9A 1O8HA 4OZYA 4OJ6A 1K5CA 1PLUA 2QZAA 4XLHA 3SY2A 3NAWA 2XTYA 2BSPA 3PETA 4XR6A 3ZPPA 1EZGA 2O0VA 3SQVA 1O8DA 1EA0A 4YZXA 1H80A 4OJPA 4MR0A 3VMWA 4XMYA 4YC5A 2QYUA 1KCDA 2XTXA 1AIRA 2X6WA 1LLZA 1QA1A 4W8QA 2PYHA 2J8IA 1L1IA 2BM5A 2VFPA 4URRA
chains in the Genus database with same CATH topology
1O8FA 1O8LA 4AVZA 5C1EA 3VMVA 2O1DA 3EQOA 4OJ5A 1PXZA 1KTWA 2INUA 1QJVA 1XG2A 1HG8A 1BN8A 2VBEA 1WMRA 1GQ8A 1IA5A 4W8SA 4NK6A 3LMWA 5C1CA 2INVA 2PECA 4XN0A 1CZFA 4C2LA 3GRHA 2VJJA 1OGMX 2NZMA 2NSTA 3UW0A 3JURA 3WWGA 2Z8GA 2UVFA 5AMVA 4W8RA 3GQ8A 4XOPA 2VBKA 1O8EA 4OJOA 4YZAA 1JTAA 2VBMA 4HWVA 4U4BA 4XNFA 2X6YA 4YEJA 2VJIA 2QX3A 4XL9A 2PYGA 3EQNA 4OZZA 4XQFA 1O8JA 4U49A 4EW9A 4PMHA 4XKWA 4Z03A 2O0WA 2NT9A 1DBGA 3GQAA 4XLEA 2QXZA 2X85A 2O17A 1IDJA 4XOTA 2X6XA 3ZSCA 2NTQA 1QCXA 2UVEA 4XLAA 1EE6A 4YELA 2NTBA 1DBOA 2NTPA 4NK8A 3VSVA 2ODLA 1O8IA 4Z06A 1RMGA 1IDKA 2EWEA 1OFLA 4XM3A 1JRGA 1RWRA 3GQ7A 4Z05A 3FY3A 4XLCA 4OJLA 1IB4A 2X3HA 2IQ7A 3B90A 3KRGA 1RU4A 1BHEA 1O8MA 2QY1A 1OGOX 1OOCA 3SUCA 3T9GA 1O8KA 4YZ0A 2NT6A 1OFMA 4XN3A 4XLFA 4XORA 4W8TA 1VBLA 1O8GA 2O04A 4XKVA 1O88A 3B8YA 1NHCA 4XONA 3VSUA 3B4NA 4YZQA 1PE9A 4I84A 1X0CA 2NSPA 3VSTA 1KCCA 4MXNA 3GQ9A 1O8HA 4OZYA 4OJ6A 1K5CA 1PLUA 4XLHA 3ZPPA 2BSPA 4XR6A 2O0VA 1O8DA 4YZXA 1H80A 4OJPA 4MR0A 3VMWA 4XMYA 1KCDA 1AIRA 2X6WA 4W8QA 2PYHA 4URRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O8F A;  1O8L A;  4AVZ A;  5C1E A;  3VMV A;  2O1D A;  3EQO A;  4OJ5 A;  1PXZ A;  1KTW A;  2INU A;  1QJV A;  1XG2 A;  1HG8 A;  1BN8 A;  2VBE A;  1WMR A;  1GQ8 A;  1IA5 A;  4W8S A;  4NK6 A;  3LMW A;  5C1C A;  2INV A;  2PEC A;  4XN0 A;  1CZF A;  4C2L A;  3GRH A;  2VJJ A;  1OGM X;  2NZM A;  2NST A;  3UW0 A;  3JUR A;  3WWG A;  2Z8G A;  2UVF A;  5AMV A;  4W8R A;  3GQ8 A;  4XOP A;  2VBK A;  1O8E A;  4OJO A;  4YZA A;  1JTA A;  2VBM A;  4HWV A;  4U4B A;  4XNF A;  2X6Y A;  4YEJ A;  2VJI A;  2QX3 A;  4XL9 A;  2PYG A;  3EQN A;  4OZZ A;  4XQF A;  1O8J A;  4U49 A;  4EW9 A;  4PMH A;  4XKW A;  4Z03 A;  2O0W A;  2NT9 A;  1DBG A;  3GQA A;  4XLE A;  2QXZ A;  2X85 A;  2O17 A;  1IDJ A;  4XOT A;  2X6X A;  3ZSC A;  2NTQ A;  1QCX A;  2UVE A;  4XLA A;  1EE6 A;  4YEL A;  2NTB A;  1DBO A;  2NTP A;  4NK8 A;  3VSV A;  2ODL A;  1O8I A;  4Z06 A;  1RMG A;  1IDK A;  2EWE A;  1OFL A;  4XM3 A;  1JRG A;  1RWR A;  3GQ7 A;  4Z05 A;  3FY3 A;  4XLC A;  4OJL A;  1IB4 A;  2X3H A;  2IQ7 A;  3B90 A;  3KRG A;  1RU4 A;  1BHE A;  1O8M A;  2QY1 A;  1OGO X;  1OOC A;  3SUC A;  3T9G A;  1O8K A;  4YZ0 A;  2NT6 A;  1OFM A;  4XN3 A;  4XLF A;  4XOR A;  4W8T A;  1VBL A;  1O8G A;  2O04 A;  4XKV A;  1O88 A;  3B8Y A;  1NHC A;  4XON A;  3VSU A;  3B4N A;  4YZQ A;  1PE9 A;  4I84 A;  1X0C A;  2NSP A;  3VST A;  1KCC A;  4MXN A;  3GQ9 A;  1O8H A;  4OZY A;  4OJ6 A;  1K5C A;  1PLU A;  4XLH A;  3ZPP A;  2BSP A;  4XR6 A;  2O0V A;  1O8D A;  4YZX A;  1H80 A;  4OJP A;  4MR0 A;  3VMW A;  4XMY A;  1KCD A;  1AIR A;  2X6W A;  4W8Q A;  2PYH A;  4URR A; 
#chains in the Genus database with same CATH topology
 3ML3 A;  1O8F A;  2VFQ A;  3P4G A;  1O8L A;  4AVZ A;  3BH7 B;  3PSS A;  5C1E A;  3VMV A;  2XT2 A;  2O1D A;  1CLW A;  3EQO A;  4OJ5 A;  3SZE A;  1PXZ A;  1KTW A;  2INU A;  1QJV A;  1XG2 A;  1HG8 A;  2V5I A;  1BN8 A;  2VBE A;  1WMR A;  2IOU G;  1DAB A;  4YCQ A;  1GQ8 A;  1K4Z A;  1IA5 A;  4W8S A;  4NK6 A;  3LMW A;  3TH0 A;  1TYW A;  5C1C A;  2INV A;  1WXR A;  2BM4 A;  2PEC A;  1TSP A;  4XN0 A;  1CZF A;  4C2L A;  2VFM A;  3GRH A;  2VJJ A;  1OGM X;  2NZM A;  2W7Z A;  2NST A;  1QRC A;  2XT4 A;  3UW0 A;  3JUR A;  3WWG A;  2UVF A;  2Z8G A;  5AMV A;  4W8R A;  3GQ8 A;  4XOP A;  2VBK A;  4V02 C;  1O8E A;  4OJO A;  4YZA A;  1JTA A;  1QA3 A;  2VBM A;  4HWV A;  5JMC B;  3AK5 A;  2XTW A;  4JRA C;  4U4B A;  4XNF A;  2X6Y A;  4YEJ A;  2VJI A;  2QX3 A;  4XL9 A;  2PYG A;  3EQN A;  4OZZ A;  4YFO A;  4XQF A;  2YUH A;  1O8J A;  4U49 A;  1OFE A;  4EW9 A;  4PMH A;  2BX6 A;  2VFO A;  4XKW A;  4Z03 A;  1OFD A;  2B0R A;  2O0W A;  2NT9 A;  1DBG A;  3GQA A;  4XLE A;  1HF2 A;  4KH3 A;  3JX8 A;  4OM9 A;  1TYX A;  3NB2 A;  2QXZ A;  2X85 A;  2O17 A;  1IDJ A;  4XOT A;  2X6X A;  1QQ1 A;  2VFN A;  2XC1 A;  3ZSC A;  2NTQ A;  1QCX A;  2UVE A;  4XLA A;  1QA2 A;  1EE6 A;  1LM1 A;  2NTB A;  3DU1 X;  1DBO A;  2NTP A;  4YEL A;  4NK8 A;  3VSV A;  1TYV A;  2ODL A;  1O8I A;  4Z06 A;  1RMG A;  1IDK A;  2EWE A;  1OFL A;  4XM3 A;  1JRG A;  1RWR A;  4YEI A;  1TYU A;  3GQ7 A;  4Z05 A;  1KQ5 A;  3FY3 A;  3LYC A;  4XLC A;  2O6W A;  4OJL A;  1IB4 A;  1QRB A;  2X3H A;  2IQ7 A;  2G0Y A;  2J8K A;  3B90 A;  3N90 A;  3KRG A;  3RIQ A;  3BH6 B;  1RU4 A;  1BHE A;  1O8M A;  2QY1 A;  1OGO X;  1OOC A;  3LJY A;  4YDT A;  3SUC A;  1O8K A;  3T9G A;  4YZ0 A;  1K8F A;  2NT6 A;  1OFM A;  2BM6 A;  4XLF A;  4XN3 A;  4XOR A;  4W8T A;  3N6Z A;  5DNS A;  1VBL A;  1O8G A;  2O04 A;  4XKV A;  1O88 A;  3SYJ A;  3B8Y A;  1NHC A;  4XON A;  2BM7 A;  3PSZ A;  1LLW A;  5JLV C;  3VSU A;  3B4N A;  2F3L A;  1PE9 A;  4YZQ A;  4I84 A;  1X0C A;  4OPW A;  3H09 A;  2NSP A;  3VST A;  1KCC A;  4MXN A;  3GQ9 A;  1O8H A;  4OZY A;  4OJ6 A;  1K5C A;  1PLU A;  2QZA A;  4XLH A;  3SY2 A;  3NAW A;  2XTY A;  2BSP A;  3PET A;  4XR6 A;  3ZPP A;  1EZG A;  2O0V A;  3SQV A;  1O8D A;  1EA0 A;  4YZX A;  1H80 A;  4OJP A;  4MR0 A;  3VMW A;  4XMY A;  4YC5 A;  2QYU A;  1KCD A;  2XTX A;  1AIR A;  2X6W A;  1LLZ A;  1QA1 A;  4W8Q A;  2PYH A;  2J8I A;  1L1I A;  2BM5 A;  2VFP A;  4URR A; 
#chains in the Genus database with same CATH homology
 1O8F A;  1O8L A;  4AVZ A;  5C1E A;  3VMV A;  2O1D A;  3EQO A;  4OJ5 A;  1PXZ A;  1KTW A;  2INU A;  1QJV A;  1XG2 A;  1HG8 A;  1BN8 A;  2VBE A;  1WMR A;  1GQ8 A;  1IA5 A;  4W8S A;  4NK6 A;  3LMW A;  5C1C A;  2INV A;  2PEC A;  4XN0 A;  1CZF A;  4C2L A;  3GRH A;  2VJJ A;  1OGM X;  2NZM A;  2NST A;  3UW0 A;  3JUR A;  3WWG A;  2Z8G A;  2UVF A;  5AMV A;  4W8R A;  3GQ8 A;  4XOP A;  2VBK A;  1O8E A;  4OJO A;  4YZA A;  1JTA A;  2VBM A;  4HWV A;  4U4B A;  4XNF A;  2X6Y A;  4YEJ A;  2VJI A;  2QX3 A;  4XL9 A;  2PYG A;  3EQN A;  4OZZ A;  4XQF A;  1O8J A;  4U49 A;  4EW9 A;  4PMH A;  4XKW A;  4Z03 A;  2O0W A;  2NT9 A;  1DBG A;  3GQA A;  4XLE A;  2QXZ A;  2X85 A;  2O17 A;  1IDJ A;  4XOT A;  2X6X A;  3ZSC A;  2NTQ A;  1QCX A;  2UVE A;  4XLA A;  1EE6 A;  4YEL A;  2NTB A;  1DBO A;  2NTP A;  4NK8 A;  3VSV A;  2ODL A;  1O8I A;  4Z06 A;  1RMG A;  1IDK A;  2EWE A;  1OFL A;  4XM3 A;  1JRG A;  1RWR A;  3GQ7 A;  4Z05 A;  3FY3 A;  4XLC A;  4OJL A;  1IB4 A;  2X3H A;  2IQ7 A;  3B90 A;  3KRG A;  1RU4 A;  1BHE A;  1O8M A;  2QY1 A;  1OGO X;  1OOC A;  3SUC A;  3T9G A;  1O8K A;  4YZ0 A;  2NT6 A;  1OFM A;  4XN3 A;  4XLF A;  4XOR A;  4W8T A;  1VBL A;  1O8G A;  2O04 A;  4XKV A;  1O88 A;  3B8Y A;  1NHC A;  4XON A;  3VSU A;  3B4N A;  4YZQ A;  1PE9 A;  4I84 A;  1X0C A;  2NSP A;  3VST A;  1KCC A;  4MXN A;  3GQ9 A;  1O8H A;  4OZY A;  4OJ6 A;  1K5C A;  1PLU A;  4XLH A;  3ZPP A;  2BSP A;  4XR6 A;  2O0V A;  1O8D A;  4YZX A;  1H80 A;  4OJP A;  4MR0 A;  3VMW A;  4XMY A;  1KCD A;  1AIR A;  2X6W A;  4W8Q A;  2PYH A;  4URR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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