4HWVA

Structure of pectate lyase from acidovorax avenae subsp citrulli
Total Genus 188
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
498
structure length
498
Chain Sequence
MDIGINSDPNSAAPAGSIDSLGATGWASHGTPTTGGQGAAAERTYTVANRNELIQALYGNTAVIAPDGSVQGTPDKAPKVIRIRGTIDLNVDGQLRPYTPDRYVAGSCASSVHGYASQASLWSDYLAAYRPGAWGNARTVSGKPEDARACAAELQRRVVTISVPDNTSLLGIGTDAKILHGNLMLGTPDAPVANIVIRNITFEDAFDDFPQWDPTDSSDGRWNSEYDLISVAHASHVWIDHNTFSDGDRHDHAFPSVWHETVHGTDYSGGDFKVQHHDGLVDVTRHGNYVTLSNNHFHDHDKAFLIGGTDVPGADSGNPRMLKVTFHGNHFQNLRQRQARVRYGMVHLYNNYYENTRDASADYPWLAGMTLGQSGKVHAENNVVSLAGPDRPARPADVANARISAARTQDCAALFSASECASTFYDSGTVLNGGPADLTAAVRWSSALAAAPAWKPSDFYDYTLEDTADLAARITARAGAGKLEGPAEPRKLAAALEH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pectate lyase/Amb allergen
publication title 1.37 angstrom crystal structure of pathogenic factor pectate lyase from Acidovorax citrulli.
pubmed doi rcsb
source organism Acidovorax citrulli
molecule tags Lyase
total genus 188
structure length 498
sequence length 498
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4hwvA00
2X85A 4XLFA 3EQOA 1OOCA 1O8LA 4NK6A 4OJPA 4XONA 1GQ8A 4C2LA 4W8RA 2NTPA 1RMGA 5C1EA 1X0CA 2O0VA 4MXNA 1BN8A 1CZFA 4OJ6A 4YZXA 3FY3A 3B4NA 2NT6A 4XL9A 1PLUA 1XG2A 1IDKA 1RWRA 2INVA 2INUA 2NTBA 4W8TA 1OFLA 3EQNA 2NSTA 4W8QA 4XN0A 5C1CA 1O8KA 4XR6A 3VMVA 1KCDA 3T9GA 1EE6A 3GQ9A 4U4BA 2NSPA 2VJJA 3GQ7A 1WMRA 3JURA 4XOTA 2VJIA 3KRGA 1OFMA 4XN3A 4XQFA 5AMVA 2O17A 1JTAA 2UVEA 2UVFA 4OJ5A 2ODLA 2O0WA 1H80A 2X3HA 1O8HA 1HG8A 4XNFA 1PXZA 1K5CA 4OJLA 4YZQA 4NK8A 2NZMA 2VBMA 1JRGA 1AIRA 3VSUA 2NTQA 4XKWA 3VSTA 2QXZA 4PMHA 3SUCA 1O8DA 4XLCA 2X6XA 3ZPPA 4OJOA 2X6YA 4YELA 3GRHA 4Z03A 1PE9A 2X6WA 1IA5A 1O8GA 3GQ8A 1DBGA 1DBOA 2O1DA 1KTWA 4I84A 1OGOX 2Z8GA 3B8YA 4XORA 4Z05A 4W8SA 1O8JA 2EWEA 2PYHA 2O04A 4EW9A 1O8MA 1QCXA 4XLAA 4HWVA 2PECA 4URRA 1O88A 4XLEA 1IDJA 2PYGA 1VBLA 1KCCA 4AVZA 4XLHA 3VSVA 4XM3A 1O8EA 4YZ0A 4MR0A 1NHCA 4Z06A 4XKVA 3LMWA 1OGMX 3ZSCA 3GQAA 1IB4A 2VBKA 2NT9A 1O8IA 1QJVA 4YZAA 1BHEA 2BSPA 4OZYA 4U49A 3UW0A 3WWGA 4XOPA 4XMYA 2IQ7A 2VBEA 3B90A 4OZZA 4YEJA 3VMWA 1RU4A 2QX3A 2QY1A 1O8FA
chains in the Genus database with same CATH superfamily
2X85A 4XLFA 2BM4A 3EQOA 1OOCA 3RIQA 1O8LA 4NK6A 4OJPA 5JMCB 4XONA 1GQ8A 2VFNA 4C2LA 1QA2A 4W8RA 2NTPA 2XTYA 1RMGA 5C1EA 3AK5A 1KQ5A 1X0CA 2O0VA 2VFPA 4MXNA 3SZEA 1BN8A 1CZFA 4OJ6A 4YZXA 3FY3A 3B4NA 2NT6A 4XL9A 1PLUA 1K8FA 1XG2A 2BX6A 2W7ZA 3NB2A 1IDKA 1RWRA 2INVA 2INUA 4YC5A 2VFOA 2NTBA 2J8IA 1OFLA 4W8TA 2J8KA 3LYCA 3EQNA 3N90A 2NSTA 4W8QA 1QRBA 1OFDA 4XN0A 5C1CA 1O8KA 3BH6B 4XR6A 3VMVA 1KCDA 3T9GA 1EE6A 4KH3A 3GQ9A 4U4BA 2NSPA 2VJJA 3GQ7A 1LLWA 1LM1A 1WMRA 3DU1X 3JURA 1L1IA 4XOTA 2VJIA 3KRGA 1OFMA 2B0RA 2G0YA 1TYVA 4XN3A 3SQVA 1QRCA 2V5IA 5AMVA 4XQFA 2O17A 1QQ1A 4OPWA 1QA1A 1JTAA 1CLWA 2UVEA 2UVFA 4JRAC 1H80A 2O0WA 2ODLA 2X3HA 1O8HA 1HG8A 4OJ5A 1PXZA 4XNFA 2F3LA 4YFOA 3SYJA 1K5CA 1WXRA 1TYWA 3H09A 1LLZA 2XT4A 4OJLA 1TSPA 2XT2A 2BM5A 4YZQA 2O6WA 3PSZA 4NK8A 2NZMA 2VBMA 1JRGA 4YCQA 5JLVC 1AIRA 3VSUA 4OM9A 2NTQA 4XKWA 3VSTA 2QXZA 3BH7B 4PMHA 3SUCA 1O8DA 4XLCA 2X6XA 3ZPPA 4OJOA 2X6YA 2BM6A 1EZGA 4YELA 3GRHA 1OFEA 4Z03A 1PE9A 2X6WA 1IA5A 1QA3A 2BM7A 1O8GA 3GQ8A 1DABA 1HF2A 1DBGA 1DBOA 2O1DA 1KTWA 4I84A 1OGOX 2XTXA 2Z8GA 2QZAA 3SY2A 3B8YA 3JX8A 4YEIA 3ML3A 4XORA 4Z05A 3N6ZA 4W8SA 1O8JA 2EWEA 2PYHA 1K4ZA 3PETA 2O04A 4EW9A 3LJYA 1O8MA 1QCXA 4XLAA 4YDTA 4HWVA 3P4GA 2PECA 4URRA 1O88A 4XLEA 1IDJA 2PYGA 1VBLA 1KCCA 2VFMA 3TH0A 4AVZA 1EA0A 4XLHA 3VSVA 4V02C 1TYXA 4XM3A 1O8EA 5DNSA 4MR0A 4YZ0A 1TYUA 1NHCA 2VFQA 4Z06A 2YUHA 4XKVA 3LMWA 1OGMX 3ZSCA 3GQAA 1IB4A 2VBKA 2NT9A 1O8IA 1QJVA 4YZAA 3PSSA 1BHEA 2BSPA 2QYUA 3NAWA 4OZYA 4U49A 3UW0A 3WWGA 4XOPA 4XMYA 2IQ7A 2VBEA 3B90A 4OZZA 4YEJA 3VMWA 1RU4A 2QX3A 2IOUG 2XC1A 2QY1A 1O8FA 2XTWA
chains in the Genus database with same CATH topology
2X85A 4XLFA 3EQOA 1OOCA 1O8LA 4NK6A 4OJPA 4XONA 1GQ8A 4C2LA 4W8RA 2NTPA 1RMGA 5C1EA 1X0CA 2O0VA 4MXNA 1BN8A 1CZFA 4OJ6A 4YZXA 3FY3A 3B4NA 2NT6A 4XL9A 1PLUA 1XG2A 1IDKA 1RWRA 2INVA 2INUA 2NTBA 4W8TA 1OFLA 3EQNA 2NSTA 4W8QA 4XN0A 5C1CA 1O8KA 4XR6A 3VMVA 1KCDA 3T9GA 1EE6A 3GQ9A 4U4BA 2NSPA 2VJJA 3GQ7A 1WMRA 3JURA 4XOTA 2VJIA 3KRGA 1OFMA 4XN3A 4XQFA 5AMVA 2O17A 1JTAA 2UVEA 2UVFA 4OJ5A 2ODLA 2O0WA 1H80A 2X3HA 1O8HA 1HG8A 4XNFA 1PXZA 1K5CA 4OJLA 4YZQA 4NK8A 2NZMA 2VBMA 1JRGA 1AIRA 3VSUA 2NTQA 4XKWA 3VSTA 2QXZA 4PMHA 3SUCA 1O8DA 4XLCA 2X6XA 3ZPPA 4OJOA 2X6YA 4YELA 3GRHA 4Z03A 1PE9A 2X6WA 1IA5A 1O8GA 3GQ8A 1DBGA 1DBOA 2O1DA 1KTWA 4I84A 1OGOX 2Z8GA 3B8YA 4XORA 4Z05A 4W8SA 1O8JA 2EWEA 2PYHA 2O04A 4EW9A 1O8MA 1QCXA 4XLAA 4HWVA 2PECA 4URRA 1O88A 4XLEA 1IDJA 2PYGA 1VBLA 1KCCA 4AVZA 4XLHA 3VSVA 4XM3A 1O8EA 4YZ0A 4MR0A 1NHCA 4Z06A 4XKVA 3LMWA 1OGMX 3ZSCA 3GQAA 1IB4A 2VBKA 2NT9A 1O8IA 1QJVA 4YZAA 1BHEA 2BSPA 4OZYA 4U49A 3UW0A 3WWGA 4XOPA 4XMYA 2IQ7A 2VBEA 3B90A 4OZZA 4YEJA 3VMWA 1RU4A 2QX3A 2QY1A 1O8FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X85 A;  4XLF A;  3EQO A;  1OOC A;  1O8L A;  4NK6 A;  4OJP A;  4XON A;  1GQ8 A;  4C2L A;  4W8R A;  2NTP A;  1RMG A;  5C1E A;  1X0C A;  2O0V A;  4MXN A;  1BN8 A;  1CZF A;  4OJ6 A;  4YZX A;  3FY3 A;  3B4N A;  2NT6 A;  4XL9 A;  1PLU A;  1XG2 A;  1IDK A;  1RWR A;  2INV A;  2INU A;  2NTB A;  4W8T A;  1OFL A;  3EQN A;  2NST A;  4W8Q A;  4XN0 A;  5C1C A;  1O8K A;  4XR6 A;  3VMV A;  1KCD A;  3T9G A;  1EE6 A;  3GQ9 A;  4U4B A;  2NSP A;  2VJJ A;  3GQ7 A;  1WMR A;  3JUR A;  4XOT A;  2VJI A;  3KRG A;  1OFM A;  4XN3 A;  4XQF A;  5AMV A;  2O17 A;  1JTA A;  2UVE A;  2UVF A;  4OJ5 A;  2ODL A;  2O0W A;  1H80 A;  2X3H A;  1O8H A;  1HG8 A;  4XNF A;  1PXZ A;  1K5C A;  4OJL A;  4YZQ A;  4NK8 A;  2NZM A;  2VBM A;  1JRG A;  1AIR A;  3VSU A;  2NTQ A;  4XKW A;  3VST A;  2QXZ A;  4PMH A;  3SUC A;  1O8D A;  4XLC A;  2X6X A;  3ZPP A;  4OJO A;  2X6Y A;  4YEL A;  3GRH A;  4Z03 A;  1PE9 A;  2X6W A;  1IA5 A;  1O8G A;  3GQ8 A;  1DBG A;  1DBO A;  2O1D A;  1KTW A;  4I84 A;  1OGO X;  2Z8G A;  3B8Y A;  4XOR A;  4Z05 A;  4W8S A;  1O8J A;  2EWE A;  2PYH A;  2O04 A;  4EW9 A;  1O8M A;  1QCX A;  4XLA A;  4HWV A;  2PEC A;  4URR A;  1O88 A;  4XLE A;  1IDJ A;  2PYG A;  1VBL A;  1KCC A;  4AVZ A;  4XLH A;  3VSV A;  4XM3 A;  1O8E A;  4YZ0 A;  4MR0 A;  1NHC A;  4Z06 A;  4XKV A;  3LMW A;  1OGM X;  3ZSC A;  3GQA A;  1IB4 A;  2VBK A;  2NT9 A;  1O8I A;  1QJV A;  4YZA A;  1BHE A;  2BSP A;  4OZY A;  4U49 A;  3UW0 A;  3WWG A;  4XOP A;  4XMY A;  2IQ7 A;  2VBE A;  3B90 A;  4OZZ A;  4YEJ A;  3VMW A;  1RU4 A;  2QX3 A;  2QY1 A;  1O8F A; 
#chains in the Genus database with same CATH topology
 2X85 A;  4XLF A;  2BM4 A;  3EQO A;  1OOC A;  3RIQ A;  1O8L A;  4NK6 A;  4OJP A;  5JMC B;  4XON A;  1GQ8 A;  2VFN A;  4C2L A;  1QA2 A;  4W8R A;  2NTP A;  2XTY A;  1RMG A;  5C1E A;  3AK5 A;  1KQ5 A;  1X0C A;  2O0V A;  2VFP A;  4MXN A;  3SZE A;  1BN8 A;  1CZF A;  4OJ6 A;  4YZX A;  3FY3 A;  3B4N A;  2NT6 A;  4XL9 A;  1PLU A;  1K8F A;  1XG2 A;  2BX6 A;  2W7Z A;  3NB2 A;  1IDK A;  1RWR A;  2INV A;  2INU A;  4YC5 A;  2VFO A;  2NTB A;  2J8I A;  1OFL A;  4W8T A;  2J8K A;  3LYC A;  3EQN A;  3N90 A;  2NST A;  4W8Q A;  1QRB A;  1OFD A;  4XN0 A;  5C1C A;  1O8K A;  3BH6 B;  4XR6 A;  3VMV A;  1KCD A;  3T9G A;  1EE6 A;  4KH3 A;  3GQ9 A;  4U4B A;  2NSP A;  2VJJ A;  3GQ7 A;  1LLW A;  1LM1 A;  1WMR A;  3DU1 X;  3JUR A;  1L1I A;  4XOT A;  2VJI A;  3KRG A;  1OFM A;  2B0R A;  2G0Y A;  1TYV A;  4XN3 A;  3SQV A;  1QRC A;  2V5I A;  5AMV A;  4XQF A;  2O17 A;  1QQ1 A;  4OPW A;  1QA1 A;  1JTA A;  1CLW A;  2UVE A;  2UVF A;  4JRA C;  1H80 A;  2O0W A;  2ODL A;  2X3H A;  1O8H A;  1HG8 A;  4OJ5 A;  1PXZ A;  4XNF A;  2F3L A;  4YFO A;  3SYJ A;  1K5C A;  1WXR A;  1TYW A;  3H09 A;  1LLZ A;  2XT4 A;  4OJL A;  1TSP A;  2XT2 A;  2BM5 A;  4YZQ A;  2O6W A;  3PSZ A;  4NK8 A;  2NZM A;  2VBM A;  1JRG A;  4YCQ A;  5JLV C;  1AIR A;  3VSU A;  4OM9 A;  2NTQ A;  4XKW A;  3VST A;  2QXZ A;  3BH7 B;  4PMH A;  3SUC A;  1O8D A;  4XLC A;  2X6X A;  3ZPP A;  4OJO A;  2X6Y A;  2BM6 A;  1EZG A;  4YEL A;  3GRH A;  1OFE A;  4Z03 A;  1PE9 A;  2X6W A;  1IA5 A;  1QA3 A;  2BM7 A;  1O8G A;  3GQ8 A;  1DAB A;  1HF2 A;  1DBG A;  1DBO A;  2O1D A;  1KTW A;  4I84 A;  1OGO X;  2XTX A;  2Z8G A;  2QZA A;  3SY2 A;  3B8Y A;  3JX8 A;  4YEI A;  3ML3 A;  4XOR A;  4Z05 A;  3N6Z A;  4W8S A;  1O8J A;  2EWE A;  2PYH A;  1K4Z A;  3PET A;  2O04 A;  4EW9 A;  3LJY A;  1O8M A;  1QCX A;  4XLA A;  4YDT A;  4HWV A;  3P4G A;  2PEC A;  4URR A;  1O88 A;  4XLE A;  1IDJ A;  2PYG A;  1VBL A;  1KCC A;  2VFM A;  3TH0 A;  4AVZ A;  1EA0 A;  4XLH A;  3VSV A;  4V02 C;  1TYX A;  4XM3 A;  1O8E A;  5DNS A;  4MR0 A;  4YZ0 A;  1TYU A;  1NHC A;  2VFQ A;  4Z06 A;  2YUH A;  4XKV A;  3LMW A;  1OGM X;  3ZSC A;  3GQA A;  1IB4 A;  2VBK A;  2NT9 A;  1O8I A;  1QJV A;  4YZA A;  3PSS A;  1BHE A;  2BSP A;  2QYU A;  3NAW A;  4OZY A;  4U49 A;  3UW0 A;  3WWG A;  4XOP A;  4XMY A;  2IQ7 A;  2VBE A;  3B90 A;  4OZZ A;  4YEJ A;  3VMW A;  1RU4 A;  2QX3 A;  2IOU G;  2XC1 A;  2QY1 A;  1O8F A;  2XTW A; 
#chains in the Genus database with same CATH homology
 2X85 A;  4XLF A;  3EQO A;  1OOC A;  1O8L A;  4NK6 A;  4OJP A;  4XON A;  1GQ8 A;  4C2L A;  4W8R A;  2NTP A;  1RMG A;  5C1E A;  1X0C A;  2O0V A;  4MXN A;  1BN8 A;  1CZF A;  4OJ6 A;  4YZX A;  3FY3 A;  3B4N A;  2NT6 A;  4XL9 A;  1PLU A;  1XG2 A;  1IDK A;  1RWR A;  2INV A;  2INU A;  2NTB A;  4W8T A;  1OFL A;  3EQN A;  2NST A;  4W8Q A;  4XN0 A;  5C1C A;  1O8K A;  4XR6 A;  3VMV A;  1KCD A;  3T9G A;  1EE6 A;  3GQ9 A;  4U4B A;  2NSP A;  2VJJ A;  3GQ7 A;  1WMR A;  3JUR A;  4XOT A;  2VJI A;  3KRG A;  1OFM A;  4XN3 A;  4XQF A;  5AMV A;  2O17 A;  1JTA A;  2UVE A;  2UVF A;  4OJ5 A;  2ODL A;  2O0W A;  1H80 A;  2X3H A;  1O8H A;  1HG8 A;  4XNF A;  1PXZ A;  1K5C A;  4OJL A;  4YZQ A;  4NK8 A;  2NZM A;  2VBM A;  1JRG A;  1AIR A;  3VSU A;  2NTQ A;  4XKW A;  3VST A;  2QXZ A;  4PMH A;  3SUC A;  1O8D A;  4XLC A;  2X6X A;  3ZPP A;  4OJO A;  2X6Y A;  4YEL A;  3GRH A;  4Z03 A;  1PE9 A;  2X6W A;  1IA5 A;  1O8G A;  3GQ8 A;  1DBG A;  1DBO A;  2O1D A;  1KTW A;  4I84 A;  1OGO X;  2Z8G A;  3B8Y A;  4XOR A;  4Z05 A;  4W8S A;  1O8J A;  2EWE A;  2PYH A;  2O04 A;  4EW9 A;  1O8M A;  1QCX A;  4XLA A;  4HWV A;  2PEC A;  4URR A;  1O88 A;  4XLE A;  1IDJ A;  2PYG A;  1VBL A;  1KCC A;  4AVZ A;  4XLH A;  3VSV A;  4XM3 A;  1O8E A;  4YZ0 A;  4MR0 A;  1NHC A;  4Z06 A;  4XKV A;  3LMW A;  1OGM X;  3ZSC A;  3GQA A;  1IB4 A;  2VBK A;  2NT9 A;  1O8I A;  1QJV A;  4YZA A;  1BHE A;  2BSP A;  4OZY A;  4U49 A;  3UW0 A;  3WWG A;  4XOP A;  4XMY A;  2IQ7 A;  2VBE A;  3B90 A;  4OZZ A;  4YEJ A;  3VMW A;  1RU4 A;  2QX3 A;  2QY1 A;  1O8F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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