4HWVA

Structure of pectate lyase from acidovorax avenae subsp citrulli
Total Genus 188
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
498
structure length
498
Chain Sequence
MDIGINSDPNSAAPAGSIDSLGATGWASHGTPTTGGQGAAAERTYTVANRNELIQALYGNTAVIAPDGSVQGTPDKAPKVIRIRGTIDLNVDGQLRPYTPDRYVAGSCASSVHGYASQASLWSDYLAAYRPGAWGNARTVSGKPEDARACAAELQRRVVTISVPDNTSLLGIGTDAKILHGNLMLGTPDAPVANIVIRNITFEDAFDDFPQWDPTDSSDGRWNSEYDLISVAHASHVWIDHNTFSDGDRHDHAFPSVWHETVHGTDYSGGDFKVQHHDGLVDVTRHGNYVTLSNNHFHDHDKAFLIGGTDVPGADSGNPRMLKVTFHGNHFQNLRQRQARVRYGMVHLYNNYYENTRDASADYPWLAGMTLGQSGKVHAENNVVSLAGPDRPARPADVANARISAARTQDCAALFSASECASTFYDSGTVLNGGPADLTAAVRWSSALAAAPAWKPSDFYDYTLEDTADLAARITARAGAGKLEGPAEPRKLAAALEH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title 1.37 angstrom crystal structure of pathogenic factor pectate lyase from Acidovorax citrulli.
pubmed doi rcsb
source organism Acidovorax citrulli
molecule tags Lyase
molecule keywords Pectate lyase/Amb allergen
total genus 188
structure length 498
sequence length 498
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4hwvA00
4XORA 4XL9A 3VMWA 2UVFA 4YZ0A 3B4NA 2O1DA 3VSVA 4U4BA 3VSUA 2INVA 1DBGA 4W8QA 4XOTA 1O88A 4Z03A 1JRGA 4W8RA 4XLHA 3GQ8A 1KCDA 2NZMA 4XN0A 1RWRA 4XQFA 4XNFA 4XONA 2BSPA 4Z06A 1O8IA 1OGOX 2NTQA 3UW0A 1PLUA 2X6XA 4YELA 1CZFA 2X6YA 1O8HA 5C1EA 4YZXA 1HG8A 3GQAA 4OJPA 1BN8A 2NSPA 4YEJA 1RMGA 2VJJA 4XM3A 1DBOA 1H80A 2VBEA 1BHEA 2VBMA 4I84A 1OOCA 4XKWA 2O04A 2PYGA 3KRGA 1GQ8A 3T9GA 1K5CA 1NHCA 4OJOA 1O8GA 4NK6A 4EW9A 2VBKA 2QXZA 4OJ5A 4NK8A 4YZQA 2X3HA 4MR0A 2INUA 2O0WA 4XLCA 2NSTA 1JTAA 4HWVA 2UVEA 4XLFA 1O8JA 3B8YA 4U49A 3B90A 2ODLA 4W8SA 2NTBA 2PYHA 2NT9A 4MXNA 1PE9A 5AMVA 3FY3A 3VSTA 1IDJA 3SUCA 2O0VA 4XN3A 1OFMA 2QX3A 1KTWA 1PXZA 4AVZA 1O8MA 1IDKA 3GQ7A 4OZZA 4PMHA 2IQ7A 4XOPA 4URRA 3VMVA 4C2LA 1IA5A 1OGMX 1X0CA 4W8TA 1O8DA 2PECA 2EWEA 4XLEA 2NTPA 2VJIA 1AIRA 3WWGA 1QJVA 2X85A 2X6WA 3EQNA 2QY1A 4OZYA 4XMYA 1O8FA 1EE6A 5C1CA 4XKVA 3ZSCA 1QCXA 1VBLA 2NT6A 4OJLA 4OJ6A 3GQ9A 2Z8GA 4YZAA 1WMRA 1OFLA 1O8KA 4XLAA 3LMWA 2O17A 1O8LA 4XR6A 1KCCA 3GRHA 4Z05A 3ZPPA 1IB4A 3EQOA 3JURA 1XG2A 1O8EA 1RU4A
chains in the Genus database with same CATH superfamily
1LM1A 4XORA 1KQ5A 1OFEA 4XL9A 3VMWA 2UVFA 4V02C 4YZ0A 3B4NA 2O1DA 3BH7B 3VSVA 1DABA 4U4BA 3VSUA 2INVA 1DBGA 4W8QA 4XOTA 1O88A 3SQVA 4Z03A 1JRGA 2XC1A 4OPWA 3GQ8A 4W8RA 4XLHA 2VFMA 2BM5A 1KCDA 2NZMA 3AK5A 4XN0A 3RIQA 2BX6A 1RWRA 4XQFA 4XNFA 2QZAA 4XONA 3SYJA 1QA1A 3NB2A 2BSPA 4Z06A 1O8IA 3TH0A 1QRBA 1OGOX 2VFQA 2NTQA 1K4ZA 3PSSA 1TYUA 3UW0A 2BM6A 1PLUA 2X6XA 1LLWA 4YELA 2XT2A 1CZFA 2X6YA 1QA2A 1O8HA 4YEIA 3DU1X 5C1EA 3PETA 1HG8A 3GQAA 4YZXA 5JLVC 3N90A 3SY2A 4OJPA 1BN8A 2NSPA 4YEJA 1RMGA 1TSPA 2VJJA 4OM9A 4XM3A 1DBOA 1H80A 2VBEA 4YCQA 2YUHA 1BHEA 2VBMA 4I84A 2J8KA 2XTXA 3ML3A 1OOCA 4XKWA 2O04A 2PYGA 1QA3A 3KRGA 1GQ8A 2XTYA 2B0RA 3T9GA 4OJOA 1K5CA 2VFPA 1NHCA 1O8GA 4NK6A 2QYUA 3PSZA 4YDTA 4EW9A 2VBKA 2QXZA 4OJ5A 4NK8A 4YC5A 2X3HA 4MR0A 2INUA 4YZQA 2O0WA 4XLCA 2NSTA 1JTAA 1CLWA 2UVEA 4HWVA 4XLFA 1O8JA 2G0YA 3B8YA 4U49A 2ODLA 3B90A 2J8IA 1HF2A 4W8SA 2NTBA 2PYHA 2V5IA 2F3LA 2NT9A 3LYCA 4MXNA 1PE9A 4YFOA 5AMVA 3FY3A 3VSTA 1K8FA 1IDJA 3BH6B 5DNSA 3SUCA 2O0VA 4XN3A 1OFMA 2QX3A 1QRCA 1KTWA 1PXZA 2BM7A 4AVZA 1O8MA 2W7ZA 5JMCB 1IDKA 1WXRA 3GQ7A 4OZZA 1TYVA 3SZEA 2VFNA 4PMHA 2IQ7A 4XOPA 4URRA 3VMVA 2BM4A 3NAWA 4C2LA 1IA5A 1OGMX 1X0CA 2O6WA 4W8TA 1O8DA 2PECA 1LLZA 3JX8A 3LJYA 2EWEA 4XLEA 2NTPA 2VJIA 1AIRA 3WWGA 1EZGA 1QJVA 2XTWA 3N6ZA 2X85A 1EA0A 2X6WA 3EQNA 2QY1A 2XT4A 4OZYA 4XMYA 1TYWA 1O8FA 1EE6A 3H09A 5C1CA 4XKVA 3ZSCA 1QCXA 1VBLA 2NT6A 4JRAC 1TYXA 4OJLA 2VFOA 4OJ6A 1L1IA 3GQ9A 2Z8GA 4YZAA 1WMRA 1OFLA 1O8KA 4XLAA 3LMWA 2O17A 1QQ1A 1O8LA 4XR6A 4KH3A 3GRHA 4Z05A 3ZPPA 1IB4A 1KCCA 2IOUG 3EQOA 1OFDA 3P4GA 3JURA 1XG2A 1O8EA 1RU4A
chains in the Genus database with same CATH topology
4XORA 4XL9A 3VMWA 2UVFA 4YZ0A 3B4NA 2O1DA 3VSVA 4U4BA 3VSUA 2INVA 1DBGA 4W8QA 4XOTA 1O88A 4Z03A 1JRGA 4W8RA 4XLHA 3GQ8A 1KCDA 2NZMA 4XN0A 1RWRA 4XQFA 4XNFA 4XONA 2BSPA 4Z06A 1O8IA 1OGOX 2NTQA 3UW0A 1PLUA 2X6XA 4YELA 1CZFA 2X6YA 1O8HA 5C1EA 4YZXA 1HG8A 3GQAA 4OJPA 1BN8A 2NSPA 4YEJA 1RMGA 2VJJA 4XM3A 1DBOA 1H80A 2VBEA 1BHEA 2VBMA 4I84A 1OOCA 4XKWA 2O04A 2PYGA 3KRGA 1GQ8A 3T9GA 1K5CA 1NHCA 4OJOA 1O8GA 4NK6A 4EW9A 2VBKA 2QXZA 4OJ5A 4NK8A 4YZQA 2X3HA 4MR0A 2INUA 2O0WA 4XLCA 2NSTA 1JTAA 4HWVA 2UVEA 4XLFA 1O8JA 3B8YA 4U49A 3B90A 2ODLA 4W8SA 2NTBA 2PYHA 2NT9A 4MXNA 1PE9A 5AMVA 3FY3A 3VSTA 1IDJA 3SUCA 2O0VA 4XN3A 1OFMA 2QX3A 1KTWA 1PXZA 4AVZA 1O8MA 1IDKA 3GQ7A 4OZZA 4PMHA 2IQ7A 4XOPA 4URRA 3VMVA 4C2LA 1IA5A 1OGMX 1X0CA 4W8TA 1O8DA 2PECA 2EWEA 4XLEA 2NTPA 2VJIA 1AIRA 3WWGA 1QJVA 2X85A 2X6WA 3EQNA 2QY1A 4OZYA 4XMYA 1O8FA 1EE6A 5C1CA 4XKVA 3ZSCA 1QCXA 1VBLA 2NT6A 4OJLA 4OJ6A 3GQ9A 2Z8GA 4YZAA 1WMRA 1OFLA 1O8KA 4XLAA 3LMWA 2O17A 1O8LA 4XR6A 1KCCA 3GRHA 4Z05A 3ZPPA 1IB4A 3EQOA 3JURA 1XG2A 1O8EA 1RU4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XOR A;  4XL9 A;  3VMW A;  2UVF A;  4YZ0 A;  3B4N A;  2O1D A;  3VSV A;  4U4B A;  3VSU A;  2INV A;  1DBG A;  4W8Q A;  4XOT A;  1O88 A;  4Z03 A;  1JRG A;  4W8R A;  4XLH A;  3GQ8 A;  1KCD A;  2NZM A;  4XN0 A;  1RWR A;  4XQF A;  4XNF A;  4XON A;  2BSP A;  4Z06 A;  1O8I A;  1OGO X;  2NTQ A;  3UW0 A;  1PLU A;  2X6X A;  4YEL A;  1CZF A;  2X6Y A;  1O8H A;  5C1E A;  4YZX A;  1HG8 A;  3GQA A;  4OJP A;  1BN8 A;  2NSP A;  4YEJ A;  1RMG A;  2VJJ A;  4XM3 A;  1DBO A;  1H80 A;  2VBE A;  1BHE A;  2VBM A;  4I84 A;  1OOC A;  4XKW A;  2O04 A;  2PYG A;  3KRG A;  1GQ8 A;  3T9G A;  1K5C A;  1NHC A;  4OJO A;  1O8G A;  4NK6 A;  4EW9 A;  2VBK A;  2QXZ A;  4OJ5 A;  4NK8 A;  4YZQ A;  2X3H A;  4MR0 A;  2INU A;  2O0W A;  4XLC A;  2NST A;  1JTA A;  4HWV A;  2UVE A;  4XLF A;  1O8J A;  3B8Y A;  4U49 A;  3B90 A;  2ODL A;  4W8S A;  2NTB A;  2PYH A;  2NT9 A;  4MXN A;  1PE9 A;  5AMV A;  3FY3 A;  3VST A;  1IDJ A;  3SUC A;  2O0V A;  4XN3 A;  1OFM A;  2QX3 A;  1KTW A;  1PXZ A;  4AVZ A;  1O8M A;  1IDK A;  3GQ7 A;  4OZZ A;  4PMH A;  2IQ7 A;  4XOP A;  4URR A;  3VMV A;  4C2L A;  1IA5 A;  1OGM X;  1X0C A;  4W8T A;  1O8D A;  2PEC A;  2EWE A;  4XLE A;  2NTP A;  2VJI A;  1AIR A;  3WWG A;  1QJV A;  2X85 A;  2X6W A;  3EQN A;  2QY1 A;  4OZY A;  4XMY A;  1O8F A;  1EE6 A;  5C1C A;  4XKV A;  3ZSC A;  1QCX A;  1VBL A;  2NT6 A;  4OJL A;  4OJ6 A;  3GQ9 A;  2Z8G A;  4YZA A;  1WMR A;  1OFL A;  1O8K A;  4XLA A;  3LMW A;  2O17 A;  1O8L A;  4XR6 A;  1KCC A;  3GRH A;  4Z05 A;  3ZPP A;  1IB4 A;  3EQO A;  3JUR A;  1XG2 A;  1O8E A;  1RU4 A; 
#chains in the Genus database with same CATH topology
 1LM1 A;  4XOR A;  1KQ5 A;  1OFE A;  4XL9 A;  3VMW A;  2UVF A;  4V02 C;  4YZ0 A;  3B4N A;  2O1D A;  3BH7 B;  3VSV A;  1DAB A;  4U4B A;  3VSU A;  2INV A;  1DBG A;  4W8Q A;  4XOT A;  1O88 A;  3SQV A;  4Z03 A;  1JRG A;  2XC1 A;  4OPW A;  3GQ8 A;  4W8R A;  4XLH A;  2VFM A;  2BM5 A;  1KCD A;  2NZM A;  3AK5 A;  4XN0 A;  3RIQ A;  2BX6 A;  1RWR A;  4XQF A;  4XNF A;  2QZA A;  4XON A;  3SYJ A;  1QA1 A;  3NB2 A;  2BSP A;  4Z06 A;  1O8I A;  3TH0 A;  1QRB A;  1OGO X;  2VFQ A;  2NTQ A;  1K4Z A;  3PSS A;  1TYU A;  3UW0 A;  2BM6 A;  1PLU A;  2X6X A;  1LLW A;  4YEL A;  2XT2 A;  1CZF A;  2X6Y A;  1QA2 A;  1O8H A;  4YEI A;  3DU1 X;  5C1E A;  3PET A;  1HG8 A;  3GQA A;  4YZX A;  5JLV C;  3N90 A;  3SY2 A;  4OJP A;  1BN8 A;  2NSP A;  4YEJ A;  1RMG A;  1TSP A;  2VJJ A;  4OM9 A;  4XM3 A;  1DBO A;  1H80 A;  2VBE A;  4YCQ A;  2YUH A;  1BHE A;  2VBM A;  4I84 A;  2J8K A;  2XTX A;  3ML3 A;  1OOC A;  4XKW A;  2O04 A;  2PYG A;  1QA3 A;  3KRG A;  1GQ8 A;  2XTY A;  2B0R A;  3T9G A;  4OJO A;  1K5C A;  2VFP A;  1NHC A;  1O8G A;  4NK6 A;  2QYU A;  3PSZ A;  4YDT A;  4EW9 A;  2VBK A;  2QXZ A;  4OJ5 A;  4NK8 A;  4YC5 A;  2X3H A;  4MR0 A;  2INU A;  4YZQ A;  2O0W A;  4XLC A;  2NST A;  1JTA A;  1CLW A;  2UVE A;  4HWV A;  4XLF A;  1O8J A;  2G0Y A;  3B8Y A;  4U49 A;  2ODL A;  3B90 A;  2J8I A;  1HF2 A;  4W8S A;  2NTB A;  2PYH A;  2V5I A;  2F3L A;  2NT9 A;  3LYC A;  4MXN A;  1PE9 A;  4YFO A;  5AMV A;  3FY3 A;  3VST A;  1K8F A;  1IDJ A;  3BH6 B;  5DNS A;  3SUC A;  2O0V A;  4XN3 A;  1OFM A;  2QX3 A;  1QRC A;  1KTW A;  1PXZ A;  2BM7 A;  4AVZ A;  1O8M A;  2W7Z A;  5JMC B;  1IDK A;  1WXR A;  3GQ7 A;  4OZZ A;  1TYV A;  3SZE A;  2VFN A;  4PMH A;  2IQ7 A;  4XOP A;  4URR A;  3VMV A;  2BM4 A;  3NAW A;  4C2L A;  1IA5 A;  1OGM X;  1X0C A;  2O6W A;  4W8T A;  1O8D A;  2PEC A;  1LLZ A;  3JX8 A;  3LJY A;  2EWE A;  4XLE A;  2NTP A;  2VJI A;  1AIR A;  3WWG A;  1EZG A;  1QJV A;  2XTW A;  3N6Z A;  2X85 A;  1EA0 A;  2X6W A;  3EQN A;  2QY1 A;  2XT4 A;  4OZY A;  4XMY A;  1TYW A;  1O8F A;  1EE6 A;  3H09 A;  5C1C A;  4XKV A;  3ZSC A;  1QCX A;  1VBL A;  2NT6 A;  4JRA C;  1TYX A;  4OJL A;  2VFO A;  4OJ6 A;  1L1I A;  3GQ9 A;  2Z8G A;  4YZA A;  1WMR A;  1OFL A;  1O8K A;  4XLA A;  3LMW A;  2O17 A;  1QQ1 A;  1O8L A;  4XR6 A;  4KH3 A;  3GRH A;  4Z05 A;  3ZPP A;  1IB4 A;  1KCC A;  2IOU G;  3EQO A;  1OFD A;  3P4G A;  3JUR A;  1XG2 A;  1O8E A;  1RU4 A; 
#chains in the Genus database with same CATH homology
 4XOR A;  4XL9 A;  3VMW A;  2UVF A;  4YZ0 A;  3B4N A;  2O1D A;  3VSV A;  4U4B A;  3VSU A;  2INV A;  1DBG A;  4W8Q A;  4XOT A;  1O88 A;  4Z03 A;  1JRG A;  4W8R A;  4XLH A;  3GQ8 A;  1KCD A;  2NZM A;  4XN0 A;  1RWR A;  4XQF A;  4XNF A;  4XON A;  2BSP A;  4Z06 A;  1O8I A;  1OGO X;  2NTQ A;  3UW0 A;  1PLU A;  2X6X A;  4YEL A;  1CZF A;  2X6Y A;  1O8H A;  5C1E A;  4YZX A;  1HG8 A;  3GQA A;  4OJP A;  1BN8 A;  2NSP A;  4YEJ A;  1RMG A;  2VJJ A;  4XM3 A;  1DBO A;  1H80 A;  2VBE A;  1BHE A;  2VBM A;  4I84 A;  1OOC A;  4XKW A;  2O04 A;  2PYG A;  3KRG A;  1GQ8 A;  3T9G A;  1K5C A;  1NHC A;  4OJO A;  1O8G A;  4NK6 A;  4EW9 A;  2VBK A;  2QXZ A;  4OJ5 A;  4NK8 A;  4YZQ A;  2X3H A;  4MR0 A;  2INU A;  2O0W A;  4XLC A;  2NST A;  1JTA A;  4HWV A;  2UVE A;  4XLF A;  1O8J A;  3B8Y A;  4U49 A;  3B90 A;  2ODL A;  4W8S A;  2NTB A;  2PYH A;  2NT9 A;  4MXN A;  1PE9 A;  5AMV A;  3FY3 A;  3VST A;  1IDJ A;  3SUC A;  2O0V A;  4XN3 A;  1OFM A;  2QX3 A;  1KTW A;  1PXZ A;  4AVZ A;  1O8M A;  1IDK A;  3GQ7 A;  4OZZ A;  4PMH A;  2IQ7 A;  4XOP A;  4URR A;  3VMV A;  4C2L A;  1IA5 A;  1OGM X;  1X0C A;  4W8T A;  1O8D A;  2PEC A;  2EWE A;  4XLE A;  2NTP A;  2VJI A;  1AIR A;  3WWG A;  1QJV A;  2X85 A;  2X6W A;  3EQN A;  2QY1 A;  4OZY A;  4XMY A;  1O8F A;  1EE6 A;  5C1C A;  4XKV A;  3ZSC A;  1QCX A;  1VBL A;  2NT6 A;  4OJL A;  4OJ6 A;  3GQ9 A;  2Z8G A;  4YZA A;  1WMR A;  1OFL A;  1O8K A;  4XLA A;  3LMW A;  2O17 A;  1O8L A;  4XR6 A;  1KCC A;  3GRH A;  4Z05 A;  3ZPP A;  1IB4 A;  3EQO A;  3JUR A;  1XG2 A;  1O8E A;  1RU4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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