4HWVA

Structure of pectate lyase from acidovorax avenae subsp citrulli
Total Genus 188
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
498
structure length
498
Chain Sequence
MDIGINSDPNSAAPAGSIDSLGATGWASHGTPTTGGQGAAAERTYTVANRNELIQALYGNTAVIAPDGSVQGTPDKAPKVIRIRGTIDLNVDGQLRPYTPDRYVAGSCASSVHGYASQASLWSDYLAAYRPGAWGNARTVSGKPEDARACAAELQRRVVTISVPDNTSLLGIGTDAKILHGNLMLGTPDAPVANIVIRNITFEDAFDDFPQWDPTDSSDGRWNSEYDLISVAHASHVWIDHNTFSDGDRHDHAFPSVWHETVHGTDYSGGDFKVQHHDGLVDVTRHGNYVTLSNNHFHDHDKAFLIGGTDVPGADSGNPRMLKVTFHGNHFQNLRQRQARVRYGMVHLYNNYYENTRDASADYPWLAGMTLGQSGKVHAENNVVSLAGPDRPARPADVANARISAARTQDCAALFSASECASTFYDSGTVLNGGPADLTAAVRWSSALAAAPAWKPSDFYDYTLEDTADLAARITARAGAGKLEGPAEPRKLAAALEH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pectate lyase/Amb allergen
publication title 1.37 angstrom crystal structure of pathogenic factor pectate lyase from Acidovorax citrulli.
pubmed doi rcsb
source organism Acidovorax citrulli
molecule tags Lyase
total genus 188
structure length 498
sequence length 498
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4hwvA00
4XOTA 4Z03A 4XKWA 4OJ6A 4NK6A 1HG8A 2VBKA 4YZQA 2VJIA 4U49A 1OFLA 2O04A 1QCXA 1VBLA 2O0VA 1O8IA 2IQ7A 2ODLA 2VBMA 1IB4A 1NHCA 1OFMA 2QX3A 3B4NA 2VBEA 3GQ9A 3ZPPA 4W8RA 2QY1A 2PYGA 4MR0A 1AIRA 1O8DA 4XR6A 3VSTA 1JRGA 2UVFA 1CZFA 1PLUA 4XL9A 2X6WA 1O88A 1O8MA 4AVZA 4URRA 3WWGA 4U4BA 2UVEA 2INUA 4I84A 1GQ8A 1WMRA 4EW9A 2X3HA 4XN3A 2NTQA 1O8GA 1BHEA 2EWEA 4XNFA 1KCCA 2NTBA 2NSPA 3VMVA 3FY3A 1KCDA 4YZAA 4HWVA 3GRHA 2NT6A 4C2LA 3B90A 4YZXA 2BSPA 4YELA 3VSVA 2NSTA 4XM3A 4XLFA 2Z8GA 1DBOA 3ZSCA 2NZMA 1O8FA 3KRGA 2X6YA 2O17A 4OJPA 4OJOA 1O8EA 1O8HA 3GQ7A 4MXNA 4Z06A 3T9GA 5C1CA 3B8YA 4XOPA 3UW0A 1XG2A 4XQFA 4XORA 4Z05A 1OGOX 4OZYA 4W8TA 4OJ5A 2INVA 4PMHA 5C1EA 1O8KA 1O8LA 4XONA 5AMVA 4W8SA 2X6XA 2O0WA 3EQNA 4NK8A 4XLEA 3GQAA 1JTAA 3GQ8A 4XN0A 2PECA 1RU4A 4W8QA 1QJVA 1KTWA 2NTPA 2QXZA 1BN8A 3LMWA 3VMWA 1IA5A 1OGMX 2VJJA 4XLAA 3SUCA 1DBGA 4XLCA 1IDKA 1IDJA 4XMYA 1RMGA 1OOCA 2X85A 3JURA 4XKVA 1PE9A 4OZZA 4OJLA 2PYHA 1PXZA 4XLHA 1EE6A 1X0CA 3EQOA 4YEJA 1O8JA 2NT9A 3VSUA 1K5CA 1H80A 4YZ0A 2O1DA 1RWRA
chains in the Genus database with same CATH superfamily
4XOTA 4Z03A 4XKWA 1OFEA 1QA1A 2XT2A 2VFOA 2XTXA 4OJ6A 4NK6A 1HG8A 2VBKA 4YZQA 2VJIA 4U49A 1L1IA 2BM5A 1OFLA 3ML3A 1EA0A 3BH7B 2O04A 1QCXA 1VBLA 1DABA 2O0VA 1O8IA 2IQ7A 2ODLA 2VBMA 1K5CA 1HF2A 1IB4A 1QQ1A 1NHCA 1OFMA 2QX3A 3B4NA 2VBEA 3LYCA 3GQ9A 3ZPPA 4W8RA 2QY1A 2PYGA 4MR0A 1AIRA 3SY2A 1O8DA 4XR6A 3SZEA 2VFQA 3VSTA 1JRGA 3PSZA 2UVFA 1CZFA 1PLUA 4YC5A 4XL9A 2X6WA 1O88A 1O8MA 1TYVA 2XTYA 4AVZA 4URRA 4YEIA 3WWGA 4U4BA 2UVEA 3NAWA 2INUA 4I84A 1GQ8A 1WMRA 4EW9A 2BM7A 1TSPA 2X3HA 2NTQA 4XN3A 4YFOA 1O8GA 4V02C 2XTWA 1BHEA 4KH3A 2EWEA 4XNFA 1TYXA 1TYWA 2NTBA 4OM9A 2NSPA 1KCCA 3VMVA 3FY3A 1KCDA 2VFNA 3SYJA 2V5IA 4YZAA 4HWVA 3GRHA 2NT6A 4C2LA 3B90A 4YZXA 2BSPA 4YELA 1OFDA 3VSVA 2NSTA 4XM3A 4XLFA 2Z8GA 3PSSA 3RIQA 1DBOA 1KQ5A 3ZSCA 1TYUA 1O8FA 2NZMA 3KRGA 3TH0A 2X6YA 2O17A 2B0RA 4OJPA 4OJOA 1O8EA 1O8HA 3GQ7A 4MXNA 2J8KA 4Z06A 3T9GA 3B8YA 5C1CA 3BH6B 1QA2A 1K4ZA 3SQVA 2VFMA 1WXRA 2QYUA 4XOPA 3UW0A 1XG2A 4XQFA 4JRAC 4XORA 4Z05A 1OGOX 4OZYA 4W8TA 4OJ5A 4YCQA 2INVA 4PMHA 2YUHA 5C1EA 1O8KA 4OPWA 3JX8A 1O8LA 4XONA 5AMVA 4W8SA 3N6ZA 1QA3A 2X6XA 2BX6A 1LM1A 2O0WA 3EQNA 1K8FA 3AK5A 3LJYA 2VFPA 2O6WA 4NK8A 4XLEA 4YDTA 2BM4A 3GQAA 1JTAA 5JLVC 5JMCB 2XC1A 3GQ8A 3DU1X 1EZGA 4XN0A 2PECA 1RU4A 1LLZA 4W8QA 1QJVA 2BM6A 1KTWA 2W7ZA 2XT4A 2NTPA 2QXZA 1BN8A 3LMWA 3VMWA 1QRCA 3NB2A 1OGMX 1IA5A 2VJJA 4XLAA 3SUCA 1LLWA 1DBGA 3N90A 4XLCA 1CLWA 1IDKA 3PETA 1IDJA 1QRBA 4XMYA 1RMGA 1OOCA 2X85A 3JURA 4XKVA 1PE9A 4OZZA 4OJLA 2IOUG 2PYHA 1PXZA 4XLHA 1EE6A 1X0CA 3EQOA 4YEJA 2G0YA 1O8JA 2NT9A 2QZAA 3H09A 3VSUA 5DNSA 2F3LA 2J8IA 3P4GA 1H80A 4YZ0A 2O1DA 1RWRA
chains in the Genus database with same CATH topology
4XOTA 4Z03A 4XKWA 4OJ6A 4NK6A 1HG8A 2VBKA 4YZQA 2VJIA 4U49A 1OFLA 2O04A 1QCXA 1VBLA 2O0VA 1O8IA 2IQ7A 2ODLA 2VBMA 1IB4A 1NHCA 1OFMA 2QX3A 3B4NA 2VBEA 3GQ9A 3ZPPA 4W8RA 2QY1A 2PYGA 4MR0A 1AIRA 1O8DA 4XR6A 3VSTA 1JRGA 2UVFA 1CZFA 1PLUA 4XL9A 2X6WA 1O88A 1O8MA 4AVZA 4URRA 3WWGA 4U4BA 2UVEA 2INUA 4I84A 1GQ8A 1WMRA 4EW9A 2X3HA 4XN3A 2NTQA 1O8GA 1BHEA 2EWEA 4XNFA 1KCCA 2NTBA 2NSPA 3VMVA 3FY3A 1KCDA 4YZAA 4HWVA 3GRHA 2NT6A 4C2LA 3B90A 4YZXA 2BSPA 4YELA 3VSVA 2NSTA 4XM3A 4XLFA 2Z8GA 1DBOA 3ZSCA 2NZMA 1O8FA 3KRGA 2X6YA 2O17A 4OJPA 4OJOA 1O8EA 1O8HA 3GQ7A 4MXNA 4Z06A 3T9GA 5C1CA 3B8YA 4XOPA 3UW0A 1XG2A 4XQFA 4XORA 4Z05A 1OGOX 4OZYA 4W8TA 4OJ5A 2INVA 4PMHA 5C1EA 1O8KA 1O8LA 4XONA 5AMVA 4W8SA 2X6XA 2O0WA 3EQNA 4NK8A 4XLEA 3GQAA 1JTAA 3GQ8A 4XN0A 2PECA 1RU4A 4W8QA 1QJVA 1KTWA 2NTPA 2QXZA 1BN8A 3LMWA 3VMWA 1IA5A 1OGMX 2VJJA 4XLAA 3SUCA 1DBGA 4XLCA 1IDKA 1IDJA 4XMYA 1RMGA 1OOCA 2X85A 3JURA 4XKVA 1PE9A 4OZZA 4OJLA 2PYHA 1PXZA 4XLHA 1EE6A 1X0CA 3EQOA 4YEJA 1O8JA 2NT9A 3VSUA 1K5CA 1H80A 4YZ0A 2O1DA 1RWRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XOT A;  4Z03 A;  4XKW A;  4OJ6 A;  4NK6 A;  1HG8 A;  2VBK A;  4YZQ A;  2VJI A;  4U49 A;  1OFL A;  2O04 A;  1QCX A;  1VBL A;  2O0V A;  1O8I A;  2IQ7 A;  2ODL A;  2VBM A;  1IB4 A;  1NHC A;  1OFM A;  2QX3 A;  3B4N A;  2VBE A;  3GQ9 A;  3ZPP A;  4W8R A;  2QY1 A;  2PYG A;  4MR0 A;  1AIR A;  1O8D A;  4XR6 A;  3VST A;  1JRG A;  2UVF A;  1CZF A;  1PLU A;  4XL9 A;  2X6W A;  1O88 A;  1O8M A;  4AVZ A;  4URR A;  3WWG A;  4U4B A;  2UVE A;  2INU A;  4I84 A;  1GQ8 A;  1WMR A;  4EW9 A;  2X3H A;  4XN3 A;  2NTQ A;  1O8G A;  1BHE A;  2EWE A;  4XNF A;  1KCC A;  2NTB A;  2NSP A;  3VMV A;  3FY3 A;  1KCD A;  4YZA A;  4HWV A;  3GRH A;  2NT6 A;  4C2L A;  3B90 A;  4YZX A;  2BSP A;  4YEL A;  3VSV A;  2NST A;  4XM3 A;  4XLF A;  2Z8G A;  1DBO A;  3ZSC A;  2NZM A;  1O8F A;  3KRG A;  2X6Y A;  2O17 A;  4OJP A;  4OJO A;  1O8E A;  1O8H A;  3GQ7 A;  4MXN A;  4Z06 A;  3T9G A;  5C1C A;  3B8Y A;  4XOP A;  3UW0 A;  1XG2 A;  4XQF A;  4XOR A;  4Z05 A;  1OGO X;  4OZY A;  4W8T A;  4OJ5 A;  2INV A;  4PMH A;  5C1E A;  1O8K A;  1O8L A;  4XON A;  5AMV A;  4W8S A;  2X6X A;  2O0W A;  3EQN A;  4NK8 A;  4XLE A;  3GQA A;  1JTA A;  3GQ8 A;  4XN0 A;  2PEC A;  1RU4 A;  4W8Q A;  1QJV A;  1KTW A;  2NTP A;  2QXZ A;  1BN8 A;  3LMW A;  3VMW A;  1IA5 A;  1OGM X;  2VJJ A;  4XLA A;  3SUC A;  1DBG A;  4XLC A;  1IDK A;  1IDJ A;  4XMY A;  1RMG A;  1OOC A;  2X85 A;  3JUR A;  4XKV A;  1PE9 A;  4OZZ A;  4OJL A;  2PYH A;  1PXZ A;  4XLH A;  1EE6 A;  1X0C A;  3EQO A;  4YEJ A;  1O8J A;  2NT9 A;  3VSU A;  1K5C A;  1H80 A;  4YZ0 A;  2O1D A;  1RWR A; 
#chains in the Genus database with same CATH topology
 4XOT A;  4Z03 A;  4XKW A;  1OFE A;  1QA1 A;  2XT2 A;  2VFO A;  2XTX A;  4OJ6 A;  4NK6 A;  1HG8 A;  2VBK A;  4YZQ A;  2VJI A;  4U49 A;  1L1I A;  2BM5 A;  1OFL A;  3ML3 A;  1EA0 A;  3BH7 B;  2O04 A;  1QCX A;  1VBL A;  1DAB A;  2O0V A;  1O8I A;  2IQ7 A;  2ODL A;  2VBM A;  1K5C A;  1HF2 A;  1IB4 A;  1QQ1 A;  1NHC A;  1OFM A;  2QX3 A;  3B4N A;  2VBE A;  3LYC A;  3GQ9 A;  3ZPP A;  4W8R A;  2QY1 A;  2PYG A;  4MR0 A;  1AIR A;  3SY2 A;  1O8D A;  4XR6 A;  3SZE A;  2VFQ A;  3VST A;  1JRG A;  3PSZ A;  2UVF A;  1CZF A;  1PLU A;  4YC5 A;  4XL9 A;  2X6W A;  1O88 A;  1O8M A;  1TYV A;  2XTY A;  4AVZ A;  4URR A;  4YEI A;  3WWG A;  4U4B A;  2UVE A;  3NAW A;  2INU A;  4I84 A;  1GQ8 A;  1WMR A;  4EW9 A;  2BM7 A;  1TSP A;  2X3H A;  2NTQ A;  4XN3 A;  4YFO A;  1O8G A;  4V02 C;  2XTW A;  1BHE A;  4KH3 A;  2EWE A;  4XNF A;  1TYX A;  1TYW A;  2NTB A;  4OM9 A;  2NSP A;  1KCC A;  3VMV A;  3FY3 A;  1KCD A;  2VFN A;  3SYJ A;  2V5I A;  4YZA A;  4HWV A;  3GRH A;  2NT6 A;  4C2L A;  3B90 A;  4YZX A;  2BSP A;  4YEL A;  1OFD A;  3VSV A;  2NST A;  4XM3 A;  4XLF A;  2Z8G A;  3PSS A;  3RIQ A;  1DBO A;  1KQ5 A;  3ZSC A;  1TYU A;  1O8F A;  2NZM A;  3KRG A;  3TH0 A;  2X6Y A;  2O17 A;  2B0R A;  4OJP A;  4OJO A;  1O8E A;  1O8H A;  3GQ7 A;  4MXN A;  2J8K A;  4Z06 A;  3T9G A;  3B8Y A;  5C1C A;  3BH6 B;  1QA2 A;  1K4Z A;  3SQV A;  2VFM A;  1WXR A;  2QYU A;  4XOP A;  3UW0 A;  1XG2 A;  4XQF A;  4JRA C;  4XOR A;  4Z05 A;  1OGO X;  4OZY A;  4W8T A;  4OJ5 A;  4YCQ A;  2INV A;  4PMH A;  2YUH A;  5C1E A;  1O8K A;  4OPW A;  3JX8 A;  1O8L A;  4XON A;  5AMV A;  4W8S A;  3N6Z A;  1QA3 A;  2X6X A;  2BX6 A;  1LM1 A;  2O0W A;  3EQN A;  1K8F A;  3AK5 A;  3LJY A;  2VFP A;  2O6W A;  4NK8 A;  4XLE A;  4YDT A;  2BM4 A;  3GQA A;  1JTA A;  5JLV C;  5JMC B;  2XC1 A;  3GQ8 A;  3DU1 X;  1EZG A;  4XN0 A;  2PEC A;  1RU4 A;  1LLZ A;  4W8Q A;  1QJV A;  2BM6 A;  1KTW A;  2W7Z A;  2XT4 A;  2NTP A;  2QXZ A;  1BN8 A;  3LMW A;  3VMW A;  1QRC A;  3NB2 A;  1OGM X;  1IA5 A;  2VJJ A;  4XLA A;  3SUC A;  1LLW A;  1DBG A;  3N90 A;  4XLC A;  1CLW A;  1IDK A;  3PET A;  1IDJ A;  1QRB A;  4XMY A;  1RMG A;  1OOC A;  2X85 A;  3JUR A;  4XKV A;  1PE9 A;  4OZZ A;  4OJL A;  2IOU G;  2PYH A;  1PXZ A;  4XLH A;  1EE6 A;  1X0C A;  3EQO A;  4YEJ A;  2G0Y A;  1O8J A;  2NT9 A;  2QZA A;  3H09 A;  3VSU A;  5DNS A;  2F3L A;  2J8I A;  3P4G A;  1H80 A;  4YZ0 A;  2O1D A;  1RWR A; 
#chains in the Genus database with same CATH homology
 4XOT A;  4Z03 A;  4XKW A;  4OJ6 A;  4NK6 A;  1HG8 A;  2VBK A;  4YZQ A;  2VJI A;  4U49 A;  1OFL A;  2O04 A;  1QCX A;  1VBL A;  2O0V A;  1O8I A;  2IQ7 A;  2ODL A;  2VBM A;  1IB4 A;  1NHC A;  1OFM A;  2QX3 A;  3B4N A;  2VBE A;  3GQ9 A;  3ZPP A;  4W8R A;  2QY1 A;  2PYG A;  4MR0 A;  1AIR A;  1O8D A;  4XR6 A;  3VST A;  1JRG A;  2UVF A;  1CZF A;  1PLU A;  4XL9 A;  2X6W A;  1O88 A;  1O8M A;  4AVZ A;  4URR A;  3WWG A;  4U4B A;  2UVE A;  2INU A;  4I84 A;  1GQ8 A;  1WMR A;  4EW9 A;  2X3H A;  4XN3 A;  2NTQ A;  1O8G A;  1BHE A;  2EWE A;  4XNF A;  1KCC A;  2NTB A;  2NSP A;  3VMV A;  3FY3 A;  1KCD A;  4YZA A;  4HWV A;  3GRH A;  2NT6 A;  4C2L A;  3B90 A;  4YZX A;  2BSP A;  4YEL A;  3VSV A;  2NST A;  4XM3 A;  4XLF A;  2Z8G A;  1DBO A;  3ZSC A;  2NZM A;  1O8F A;  3KRG A;  2X6Y A;  2O17 A;  4OJP A;  4OJO A;  1O8E A;  1O8H A;  3GQ7 A;  4MXN A;  4Z06 A;  3T9G A;  5C1C A;  3B8Y A;  4XOP A;  3UW0 A;  1XG2 A;  4XQF A;  4XOR A;  4Z05 A;  1OGO X;  4OZY A;  4W8T A;  4OJ5 A;  2INV A;  4PMH A;  5C1E A;  1O8K A;  1O8L A;  4XON A;  5AMV A;  4W8S A;  2X6X A;  2O0W A;  3EQN A;  4NK8 A;  4XLE A;  3GQA A;  1JTA A;  3GQ8 A;  4XN0 A;  2PEC A;  1RU4 A;  4W8Q A;  1QJV A;  1KTW A;  2NTP A;  2QXZ A;  1BN8 A;  3LMW A;  3VMW A;  1IA5 A;  1OGM X;  2VJJ A;  4XLA A;  3SUC A;  1DBG A;  4XLC A;  1IDK A;  1IDJ A;  4XMY A;  1RMG A;  1OOC A;  2X85 A;  3JUR A;  4XKV A;  1PE9 A;  4OZZ A;  4OJL A;  2PYH A;  1PXZ A;  4XLH A;  1EE6 A;  1X0C A;  3EQO A;  4YEJ A;  1O8J A;  2NT9 A;  3VSU A;  1K5C A;  1H80 A;  4YZ0 A;  2O1D A;  1RWR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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