4HWVA

Structure of pectate lyase from acidovorax avenae subsp citrulli
Total Genus 188
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
498
structure length
498
Chain Sequence
b'MDIGINSDPNSAAPAGSIDSLGATGWASHGTPTTGGQGAAAERTYTVANRNELIQALYGNTAVIAPDGSVQGTPDKAPKVIRIRGTIDLNVDGQLRPYTPDRYVAGSCASSVHGYASQASLWSDYLAAYRPGAWGNARTVSGKPEDARACAAELQRRVVTISVPDNTSLLGIGTDAKILHGNLMLGTPDAPVANIVIRNITFEDAFDDFPQWDPTDSSDGRWNSEYDLISVAHASHVWIDHNTFSDGDRHDHAFPSVWHETVHGTDYSGGDFKVQHHDGLVDVTRHGNYVTLSNNHFHDHDKAFLIGGTDVPGADSGNPRMLKVTFHGNHFQNLRQRQARVRYGMVHLYNNYYENTRDASADYPWLAGMTLGQSGKVHAENNVVSLAGPDRPARPADVANARISAARTQDCAALFSASECASTFYDSGTVLNGGPADLTAAVRWSSALAAAPAWKPSDFYDYTLEDTADLAARITARAGAGKLEGPAEPRKLAAALEH'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pectate lyase/Amb allergen
publication title 1.37 angstrom crystal structure of pathogenic factor pectate lyase from Acidovorax citrulli.
pubmed doi rcsb
source organism Acidovorax citrulli
molecule tags Lyase
total genus 188
structure length 498
sequence length 498
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4hwvA00
2VBEA 3LMWA 4OZYA 2O04A 4OJ5A 4W8TA 4XKVA 1K5CA 1O8FA 3GQ9A 3ZSCA 2O0VA 1H80A 1OGOX 4YZ0A 2VJIA 1PLUA 4Z03A 1JRGA 4YELA 2PYGA 2NT6A 1O88A 2O0WA 4OJ6A 1QCXA 4U49A 4XONA 4YZXA 2VBKA 3VSVA 4OJOA 1BHEA 1O8MA 3EQNA 4Z05A 4OZZA 4OJLA 1O8HA 1JTAA 1O8KA 1KTWA 2VBMA 2NTQA 4XR6A 4W8RA 3WWGA 4XLCA 2VJJA 3T9GA 2X85A 1CZFA 2NTPA 3ZPPA 1O8EA 2X3HA 2IQ7A 3KRGA 4HWVA 3VSUA 3GQ7A 4XOPA 2UVEA 3SUCA 1O8IA 2BSPA 4XLHA 1XG2A 4AVZA 2INVA 4EW9A 4XQFA 4NK6A 4URRA 1OGMX 3GQ8A 5C1EA 4XORA 1RWRA 1WMRA 1KCDA 1BN8A 2NTBA 1DBOA 2NSTA 2NSPA 1RMGA 1QJVA 4MR0A 2PYHA 2O1DA 4C2LA 1OFLA 3FY3A 1O8JA 3B4NA 4Z06A 4XKWA 1IB4A 5AMVA 4YZAA 1OFMA 3GRHA 1O8LA 2QX3A 2O17A 2UVFA 4YEJA 1O8DA 1IDJA 2EWEA 1VBLA 1RU4A 4PMHA 4XN3A 1PXZA 2NT9A 3B90A 4XM3A 4MXNA 1IDKA 3EQOA 4XLEA 1DBGA 1GQ8A 4XN0A 4XLFA 2Z8GA 2X6WA 2PECA 3B8YA 4I84A 4XOTA 1AIRA 1HG8A 1NHCA 2QXZA 4W8QA 5C1CA 4NK8A 3VMVA 4XL9A 4YZQA 2NZMA 2X6XA 4U4BA 1X0CA 3GQAA 4W8SA 1IA5A 4OJPA 1O8GA 2X6YA 4XLAA 4XNFA 1KCCA 3UW0A 1PE9A 1OOCA 3VSTA 3JURA 3VMWA 4XMYA 1EE6A 2ODLA 2QY1A 2INUA
chains in the Genus database with same CATH superfamily
1K4ZA 2BM4A 1WXRA 2VBEA 1OFDA 3LMWA 4OZYA 2O04A 4YC5A 4OJ5A 4KH3A 4W8TA 5JMCB 1DABA 4XKVA 1K5CA 1O8FA 3GQ9A 3ZSCA 1LLZA 3SQVA 2O0VA 1H80A 2XTXA 1OGOX 4YZ0A 2VJIA 1PLUA 2XT2A 4Z03A 1JRGA 4YELA 2PYGA 2NT6A 1O88A 2O0WA 2VFQA 4OJ6A 1EZGA 1QCXA 4U49A 4V02C 4XONA 4YZXA 2VBKA 3VSVA 2V5IA 4OJOA 1BHEA 1O8MA 3EQNA 4Z05A 4OZZA 4OJLA 1O8HA 1JTAA 1O8KA 3BH6B 1KTWA 2VBMA 1TYXA 1HF2A 1KQ5A 2NTQA 4W8RA 2IOUG 3ML3A 4XR6A 3WWGA 4XLCA 3SZEA 2VJJA 3T9GA 2X85A 1CZFA 5DNSA 2NTPA 3PETA 3H09A 3ZPPA 1O8EA 1LLWA 2X3HA 3BH7B 2IQ7A 1QA1A 3KRGA 4HWVA 3VSUA 1EA0A 3GQ7A 3DU1X 4XOPA 2UVEA 4YCQA 3SUCA 2VFOA 1O8IA 2BSPA 4OPWA 3TH0A 2BM5A 3P4GA 4XLHA 1XG2A 4AVZA 2INVA 4EW9A 4XQFA 1OFEA 2BM6A 2QYUA 4NK6A 4URRA 1OGMX 3GQ8A 2J8KA 4XORA 1RWRA 2W7ZA 5C1EA 3PSZA 1WMRA 1KCDA 1QRCA 1BN8A 2XTWA 2NSTA 1DBOA 2NTBA 2YUHA 2QZAA 2NSPA 3N6ZA 3NB2A 1L1IA 2XC1A 3LYCA 3RIQA 1RMGA 1QJVA 2B0RA 4MR0A 2PYHA 2XT4A 4YEIA 3LJYA 2G0YA 1QQ1A 1TYWA 2O1DA 4C2LA 1OFLA 3FY3A 1O8JA 3B4NA 4Z06A 4XKWA 1IB4A 5AMVA 4YZAA 1OFMA 3GRHA 1O8LA 2QX3A 3PSSA 2O17A 1K8FA 2UVFA 4YEJA 3JX8A 1O8DA 1IDJA 3N90A 1TYVA 2EWEA 1LM1A 1VBLA 4YFOA 1RU4A 2BX6A 4PMHA 4XN3A 1PXZA 2NT9A 3NAWA 1TYUA 3B90A 4XM3A 4MXNA 2BM7A 1QRBA 1IDKA 2F3LA 2XTYA 3EQOA 4XLEA 1DBGA 1GQ8A 4XN0A 1TSPA 4XLFA 4YDTA 2O6WA 2Z8GA 2X6WA 2PECA 3B8YA 4I84A 4XOTA 1AIRA 3SY2A 3AK5A 1HG8A 1NHCA 2QXZA 4W8QA 5C1CA 4NK8A 3VMVA 4XL9A 4YZQA 2NZMA 1QA3A 2X6XA 4U4BA 1X0CA 3GQAA 4W8SA 5JLVC 1IA5A 4OJPA 1O8GA 2X6YA 3SYJA 2J8IA 4XLAA 2VFPA 4XNFA 1KCCA 3UW0A 1PE9A 2VFNA 1OOCA 4OM9A 3VSTA 1CLWA 2VFMA 3JURA 4XMYA 1EE6A 3VMWA 2ODLA 2QY1A 4JRAC 2INUA 1QA2A
chains in the Genus database with same CATH topology
2VBEA 3LMWA 4OZYA 2O04A 4OJ5A 4W8TA 4XKVA 1K5CA 1O8FA 3GQ9A 3ZSCA 2O0VA 1H80A 1OGOX 4YZ0A 2VJIA 1PLUA 4Z03A 1JRGA 4YELA 2PYGA 2NT6A 1O88A 2O0WA 4OJ6A 1QCXA 4U49A 4XONA 4YZXA 2VBKA 3VSVA 4OJOA 1BHEA 1O8MA 3EQNA 4Z05A 4OZZA 4OJLA 1O8HA 1JTAA 1O8KA 1KTWA 2VBMA 2NTQA 4XR6A 4W8RA 3WWGA 4XLCA 2VJJA 3T9GA 2X85A 1CZFA 2NTPA 3ZPPA 1O8EA 2X3HA 2IQ7A 3KRGA 4HWVA 3VSUA 3GQ7A 4XOPA 2UVEA 3SUCA 1O8IA 2BSPA 4XLHA 1XG2A 4AVZA 2INVA 4EW9A 4XQFA 4NK6A 4URRA 1OGMX 3GQ8A 5C1EA 4XORA 1RWRA 1WMRA 1KCDA 1BN8A 2NTBA 1DBOA 2NSTA 2NSPA 1RMGA 1QJVA 4MR0A 2PYHA 2O1DA 4C2LA 1OFLA 3FY3A 1O8JA 3B4NA 4Z06A 4XKWA 1IB4A 5AMVA 4YZAA 1OFMA 3GRHA 1O8LA 2QX3A 2O17A 2UVFA 4YEJA 1O8DA 1IDJA 2EWEA 1VBLA 1RU4A 4PMHA 4XN3A 1PXZA 2NT9A 3B90A 4XM3A 4MXNA 1IDKA 3EQOA 4XLEA 1DBGA 1GQ8A 4XN0A 4XLFA 2Z8GA 2X6WA 2PECA 3B8YA 4I84A 4XOTA 1AIRA 1HG8A 1NHCA 2QXZA 4W8QA 5C1CA 4NK8A 3VMVA 4XL9A 4YZQA 2NZMA 2X6XA 4U4BA 1X0CA 3GQAA 4W8SA 1IA5A 4OJPA 1O8GA 2X6YA 4XLAA 4XNFA 1KCCA 3UW0A 1PE9A 1OOCA 3VSTA 3JURA 3VMWA 4XMYA 1EE6A 2ODLA 2QY1A 2INUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VBE A;  3LMW A;  4OZY A;  2O04 A;  4OJ5 A;  4W8T A;  4XKV A;  1K5C A;  1O8F A;  3GQ9 A;  3ZSC A;  2O0V A;  1H80 A;  1OGO X;  4YZ0 A;  2VJI A;  1PLU A;  4Z03 A;  1JRG A;  4YEL A;  2PYG A;  2NT6 A;  1O88 A;  2O0W A;  4OJ6 A;  1QCX A;  4U49 A;  4XON A;  4YZX A;  2VBK A;  3VSV A;  4OJO A;  1BHE A;  1O8M A;  3EQN A;  4Z05 A;  4OZZ A;  4OJL A;  1O8H A;  1JTA A;  1O8K A;  1KTW A;  2VBM A;  2NTQ A;  4XR6 A;  4W8R A;  3WWG A;  4XLC A;  2VJJ A;  3T9G A;  2X85 A;  1CZF A;  2NTP A;  3ZPP A;  1O8E A;  2X3H A;  2IQ7 A;  3KRG A;  4HWV A;  3VSU A;  3GQ7 A;  4XOP A;  2UVE A;  3SUC A;  1O8I A;  2BSP A;  4XLH A;  1XG2 A;  4AVZ A;  2INV A;  4EW9 A;  4XQF A;  4NK6 A;  4URR A;  1OGM X;  3GQ8 A;  5C1E A;  4XOR A;  1RWR A;  1WMR A;  1KCD A;  1BN8 A;  2NTB A;  1DBO A;  2NST A;  2NSP A;  1RMG A;  1QJV A;  4MR0 A;  2PYH A;  2O1D A;  4C2L A;  1OFL A;  3FY3 A;  1O8J A;  3B4N A;  4Z06 A;  4XKW A;  1IB4 A;  5AMV A;  4YZA A;  1OFM A;  3GRH A;  1O8L A;  2QX3 A;  2O17 A;  2UVF A;  4YEJ A;  1O8D A;  1IDJ A;  2EWE A;  1VBL A;  1RU4 A;  4PMH A;  4XN3 A;  1PXZ A;  2NT9 A;  3B90 A;  4XM3 A;  4MXN A;  1IDK A;  3EQO A;  4XLE A;  1DBG A;  1GQ8 A;  4XN0 A;  4XLF A;  2Z8G A;  2X6W A;  2PEC A;  3B8Y A;  4I84 A;  4XOT A;  1AIR A;  1HG8 A;  1NHC A;  2QXZ A;  4W8Q A;  5C1C A;  4NK8 A;  3VMV A;  4XL9 A;  4YZQ A;  2NZM A;  2X6X A;  4U4B A;  1X0C A;  3GQA A;  4W8S A;  1IA5 A;  4OJP A;  1O8G A;  2X6Y A;  4XLA A;  4XNF A;  1KCC A;  3UW0 A;  1PE9 A;  1OOC A;  3VST A;  3JUR A;  3VMW A;  4XMY A;  1EE6 A;  2ODL A;  2QY1 A;  2INU A; 
#chains in the Genus database with same CATH topology
 1K4Z A;  2BM4 A;  1WXR A;  2VBE A;  1OFD A;  3LMW A;  4OZY A;  2O04 A;  4YC5 A;  4OJ5 A;  4KH3 A;  4W8T A;  5JMC B;  1DAB A;  4XKV A;  1K5C A;  1O8F A;  3GQ9 A;  3ZSC A;  1LLZ A;  3SQV A;  2O0V A;  1H80 A;  2XTX A;  1OGO X;  4YZ0 A;  2VJI A;  1PLU A;  2XT2 A;  4Z03 A;  1JRG A;  4YEL A;  2PYG A;  2NT6 A;  1O88 A;  2O0W A;  2VFQ A;  4OJ6 A;  1EZG A;  1QCX A;  4U49 A;  4V02 C;  4XON A;  4YZX A;  2VBK A;  3VSV A;  2V5I A;  4OJO A;  1BHE A;  1O8M A;  3EQN A;  4Z05 A;  4OZZ A;  4OJL A;  1O8H A;  1JTA A;  1O8K A;  3BH6 B;  1KTW A;  2VBM A;  1TYX A;  1HF2 A;  1KQ5 A;  2NTQ A;  4W8R A;  2IOU G;  3ML3 A;  4XR6 A;  3WWG A;  4XLC A;  3SZE A;  2VJJ A;  3T9G A;  2X85 A;  1CZF A;  5DNS A;  2NTP A;  3PET A;  3H09 A;  3ZPP A;  1O8E A;  1LLW A;  2X3H A;  3BH7 B;  2IQ7 A;  1QA1 A;  3KRG A;  4HWV A;  3VSU A;  1EA0 A;  3GQ7 A;  3DU1 X;  4XOP A;  2UVE A;  4YCQ A;  3SUC A;  2VFO A;  1O8I A;  2BSP A;  4OPW A;  3TH0 A;  2BM5 A;  3P4G A;  4XLH A;  1XG2 A;  4AVZ A;  2INV A;  4EW9 A;  4XQF A;  1OFE A;  2BM6 A;  2QYU A;  4NK6 A;  4URR A;  1OGM X;  3GQ8 A;  2J8K A;  4XOR A;  1RWR A;  2W7Z A;  5C1E A;  3PSZ A;  1WMR A;  1KCD A;  1QRC A;  1BN8 A;  2XTW A;  2NST A;  1DBO A;  2NTB A;  2YUH A;  2QZA A;  2NSP A;  3N6Z A;  3NB2 A;  1L1I A;  2XC1 A;  3LYC A;  3RIQ A;  1RMG A;  1QJV A;  2B0R A;  4MR0 A;  2PYH A;  2XT4 A;  4YEI A;  3LJY A;  2G0Y A;  1QQ1 A;  1TYW A;  2O1D A;  4C2L A;  1OFL A;  3FY3 A;  1O8J A;  3B4N A;  4Z06 A;  4XKW A;  1IB4 A;  5AMV A;  4YZA A;  1OFM A;  3GRH A;  1O8L A;  2QX3 A;  3PSS A;  2O17 A;  1K8F A;  2UVF A;  4YEJ A;  3JX8 A;  1O8D A;  1IDJ A;  3N90 A;  1TYV A;  2EWE A;  1LM1 A;  1VBL A;  4YFO A;  1RU4 A;  2BX6 A;  4PMH A;  4XN3 A;  1PXZ A;  2NT9 A;  3NAW A;  1TYU A;  3B90 A;  4XM3 A;  4MXN A;  2BM7 A;  1QRB A;  1IDK A;  2F3L A;  2XTY A;  3EQO A;  4XLE A;  1DBG A;  1GQ8 A;  4XN0 A;  1TSP A;  4XLF A;  4YDT A;  2O6W A;  2Z8G A;  2X6W A;  2PEC A;  3B8Y A;  4I84 A;  4XOT A;  1AIR A;  3SY2 A;  3AK5 A;  1HG8 A;  1NHC A;  2QXZ A;  4W8Q A;  5C1C A;  4NK8 A;  3VMV A;  4XL9 A;  4YZQ A;  2NZM A;  1QA3 A;  2X6X A;  4U4B A;  1X0C A;  3GQA A;  4W8S A;  5JLV C;  1IA5 A;  4OJP A;  1O8G A;  2X6Y A;  3SYJ A;  2J8I A;  4XLA A;  2VFP A;  4XNF A;  1KCC A;  3UW0 A;  1PE9 A;  2VFN A;  1OOC A;  4OM9 A;  3VST A;  1CLW A;  2VFM A;  3JUR A;  4XMY A;  1EE6 A;  3VMW A;  2ODL A;  2QY1 A;  4JRA C;  2INU A;  1QA2 A; 
#chains in the Genus database with same CATH homology
 2VBE A;  3LMW A;  4OZY A;  2O04 A;  4OJ5 A;  4W8T A;  4XKV A;  1K5C A;  1O8F A;  3GQ9 A;  3ZSC A;  2O0V A;  1H80 A;  1OGO X;  4YZ0 A;  2VJI A;  1PLU A;  4Z03 A;  1JRG A;  4YEL A;  2PYG A;  2NT6 A;  1O88 A;  2O0W A;  4OJ6 A;  1QCX A;  4U49 A;  4XON A;  4YZX A;  2VBK A;  3VSV A;  4OJO A;  1BHE A;  1O8M A;  3EQN A;  4Z05 A;  4OZZ A;  4OJL A;  1O8H A;  1JTA A;  1O8K A;  1KTW A;  2VBM A;  2NTQ A;  4XR6 A;  4W8R A;  3WWG A;  4XLC A;  2VJJ A;  3T9G A;  2X85 A;  1CZF A;  2NTP A;  3ZPP A;  1O8E A;  2X3H A;  2IQ7 A;  3KRG A;  4HWV A;  3VSU A;  3GQ7 A;  4XOP A;  2UVE A;  3SUC A;  1O8I A;  2BSP A;  4XLH A;  1XG2 A;  4AVZ A;  2INV A;  4EW9 A;  4XQF A;  4NK6 A;  4URR A;  1OGM X;  3GQ8 A;  5C1E A;  4XOR A;  1RWR A;  1WMR A;  1KCD A;  1BN8 A;  2NTB A;  1DBO A;  2NST A;  2NSP A;  1RMG A;  1QJV A;  4MR0 A;  2PYH A;  2O1D A;  4C2L A;  1OFL A;  3FY3 A;  1O8J A;  3B4N A;  4Z06 A;  4XKW A;  1IB4 A;  5AMV A;  4YZA A;  1OFM A;  3GRH A;  1O8L A;  2QX3 A;  2O17 A;  2UVF A;  4YEJ A;  1O8D A;  1IDJ A;  2EWE A;  1VBL A;  1RU4 A;  4PMH A;  4XN3 A;  1PXZ A;  2NT9 A;  3B90 A;  4XM3 A;  4MXN A;  1IDK A;  3EQO A;  4XLE A;  1DBG A;  1GQ8 A;  4XN0 A;  4XLF A;  2Z8G A;  2X6W A;  2PEC A;  3B8Y A;  4I84 A;  4XOT A;  1AIR A;  1HG8 A;  1NHC A;  2QXZ A;  4W8Q A;  5C1C A;  4NK8 A;  3VMV A;  4XL9 A;  4YZQ A;  2NZM A;  2X6X A;  4U4B A;  1X0C A;  3GQA A;  4W8S A;  1IA5 A;  4OJP A;  1O8G A;  2X6Y A;  4XLA A;  4XNF A;  1KCC A;  3UW0 A;  1PE9 A;  1OOC A;  3VST A;  3JUR A;  3VMW A;  4XMY A;  1EE6 A;  2ODL A;  2QY1 A;  2INU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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