4HWVA

Structure of pectate lyase from acidovorax avenae subsp citrulli
Total Genus 188
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
498
structure length
498
Chain Sequence
MDIGINSDPNSAAPAGSIDSLGATGWASHGTPTTGGQGAAAERTYTVANRNELIQALYGNTAVIAPDGSVQGTPDKAPKVIRIRGTIDLNVDGQLRPYTPDRYVAGSCASSVHGYASQASLWSDYLAAYRPGAWGNARTVSGKPEDARACAAELQRRVVTISVPDNTSLLGIGTDAKILHGNLMLGTPDAPVANIVIRNITFEDAFDDFPQWDPTDSSDGRWNSEYDLISVAHASHVWIDHNTFSDGDRHDHAFPSVWHETVHGTDYSGGDFKVQHHDGLVDVTRHGNYVTLSNNHFHDHDKAFLIGGTDVPGADSGNPRMLKVTFHGNHFQNLRQRQARVRYGMVHLYNNYYENTRDASADYPWLAGMTLGQSGKVHAENNVVSLAGPDRPARPADVANARISAARTQDCAALFSASECASTFYDSGTVLNGGPADLTAAVRWSSALAAAPAWKPSDFYDYTLEDTADLAARITARAGAGKLEGPAEPRKLAAALEH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
molecule keywords Pectate lyase/Amb allergen
publication title 1.37 angstrom crystal structure of pathogenic factor pectate lyase from Acidovorax citrulli.
pubmed doi rcsb
source organism Acidovorax citrulli
total genus 188
structure length 498
sequence length 498
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4hwvA00
2NTPA 3GQAA 3EQNA 4OJ6A 4XMYA 1RMGA 4W8SA 4XQFA 3VSUA 4XM3A 4U49A 2BSPA 2INVA 4XN3A 4XLAA 4XN0A 4XLHA 2NT9A 2QXZA 3B4NA 2O0VA 4XNFA 3VSVA 3ZPPA 1RWRA 1O8JA 1PXZA 1VBLA 2VBEA 1IB4A 2NTQA 4W8RA 3B90A 3GQ8A 1OOCA 1OFLA 3B8YA 4HWVA 4XONA 2VJIA 2IQ7A 2O04A 4OZYA 4Z05A 2O17A 2NSTA 2Z8GA 1K5CA 1X0CA 5C1EA 1O88A 4I84A 2PECA 4YZXA 2X6YA 1BN8A 2X6WA 4YZQA 3ZSCA 4OJPA 1O8HA 1O8FA 1O8DA 4OJOA 4C2LA 2NT6A 3EQOA 2X6XA 2ODLA 1BHEA 1DBOA 4W8TA 1EE6A 2X3HA 1AIRA 2VBMA 2QY1A 2VJJA 4XR6A 3UW0A 1PLUA 1OGOX 4EW9A 3LMWA 4AVZA 4PMHA 3SUCA 3T9GA 3JURA 4W8QA 1OFMA 1O8LA 4XOPA 5AMVA 1DBGA 2EWEA 4XOTA 3FY3A 3VMWA 4MR0A 1NHCA 1JTAA 1CZFA 1WMRA 1GQ8A 2NZMA 2O1DA 2X85A 4XLFA 1O8EA 1O8MA 4MXNA 2UVFA 2NTBA 3VSTA 4OJLA 3GRHA 3GQ7A 4XLCA 2INUA 1O8KA 4URRA 1KCDA 1KCCA 4NK6A 4XLEA 4XL9A 1OGMX 1IDKA 1PE9A 3VMVA 1O8IA 2PYHA 5C1CA 1JRGA 1HG8A 4U4BA 4YEJA 1IA5A 4YZAA 3KRGA 3GQ9A 2O0WA 4Z03A 4OZZA 2UVEA 4YELA 4Z06A 4NK8A 4XKVA 4YZ0A 1QCXA 1O8GA 1KTWA 1QJVA 2QX3A 2NSPA 4OJ5A 3WWGA 1H80A 2VBKA 2PYGA 4XKWA 1RU4A 4XORA 1IDJA 1XG2A
chains in the Genus database with same CATH superfamily
1K8FA 2NTPA 3GQAA 3SQVA 3EQNA 4OJ6A 4XMYA 1RMGA 4W8SA 4XQFA 2QZAA 3VSUA 5JMCB 2F3LA 4XM3A 4U49A 2BSPA 2INVA 4XN3A 2VFNA 4XLAA 4XN0A 4XLHA 2NT9A 2QXZA 3PETA 3B4NA 2VFQA 1QA1A 2XTXA 4YCQA 2O0VA 1TYWA 4XNFA 3VSVA 3ZPPA 1HF2A 3SY2A 1RWRA 1O8JA 1PXZA 1TYUA 1VBLA 2VBEA 2O6WA 3TH0A 2J8IA 1IB4A 2NTQA 4W8RA 3B90A 2XC1A 3LYCA 3GQ8A 1OOCA 1OFLA 3B8YA 4HWVA 3PSSA 4XONA 2VJIA 2IQ7A 2O04A 4OZYA 4Z05A 2O17A 2NSTA 2Z8GA 2IOUG 1X0CA 5C1EA 1K5CA 3N90A 1EZGA 4OPWA 2G0YA 2VFPA 1KQ5A 1O88A 1QQ1A 1QRCA 2XT4A 2PECA 4I84A 3N6ZA 3NAWA 2XT2A 4YZXA 5DNSA 2X6YA 1BN8A 2X6WA 4YZQA 3ZSCA 4OJPA 2YUHA 1O8HA 1O8FA 4YFOA 1O8DA 4OJOA 4C2LA 2NT6A 3EQOA 1TSPA 1LLWA 3JX8A 4YDTA 2X6XA 2ODLA 1BHEA 1DBOA 3BH7B 4W8TA 1EE6A 1L1IA 2X3HA 1AIRA 2QY1A 2VBMA 2VJJA 3P4GA 4XR6A 1LLZA 5JLVC 1QA3A 3UW0A 2B0RA 1PLUA 1OGOX 4EW9A 3LJYA 2VFMA 3LMWA 1OFDA 4AVZA 4YEIA 4PMHA 3SUCA 2BM7A 3JURA 4JRAC 4W8QA 3T9GA 1TYVA 2BM6A 1OFMA 1O8LA 4XOPA 5AMVA 1DBGA 1K4ZA 2EWEA 4XOTA 2QYUA 3FY3A 2V5IA 1LM1A 3VMWA 4MR0A 3SYJA 2VFOA 1EA0A 1NHCA 3H09A 4OM9A 1JTAA 1CZFA 1WMRA 4KH3A 1CLWA 4V02C 1GQ8A 3AK5A 2NZMA 2O1DA 1QRBA 2X85A 3NB2A 2J8KA 4XLFA 1O8EA 1O8MA 4MXNA 2UVFA 3ML3A 2NTBA 3VSTA 4OJLA 3GRHA 3GQ7A 4XLCA 2INUA 4YC5A 1O8KA 4URRA 3SZEA 1KCDA 1KCCA 4NK6A 1TYXA 1OFEA 4XL9A 4XLEA 1OGMX 1IDKA 2XTWA 1PE9A 2BM4A 3VMVA 1QA2A 1O8IA 2PYHA 5C1CA 1JRGA 2BM5A 1HG8A 4U4BA 4YEJA 1IA5A 3BH6B 4YZAA 3KRGA 3RIQA 3GQ9A 3PSZA 2O0WA 4Z03A 4OZZA 2UVEA 4YELA 4Z06A 4NK8A 4XKVA 2W7ZA 4YZ0A 1QCXA 1WXRA 1O8GA 1KTWA 1QJVA 2QX3A 2NSPA 4OJ5A 3DU1X 3WWGA 2BX6A 1DABA 1H80A 2VBKA 2PYGA 4XKWA 1RU4A 4XORA 1IDJA 2XTYA 1XG2A
chains in the Genus database with same CATH topology
2NTPA 3GQAA 3EQNA 4OJ6A 4XMYA 1RMGA 4W8SA 4XQFA 3VSUA 4XM3A 4U49A 2BSPA 2INVA 4XN3A 4XLAA 4XN0A 4XLHA 2NT9A 2QXZA 3B4NA 2O0VA 4XNFA 3VSVA 3ZPPA 1RWRA 1O8JA 1PXZA 1VBLA 2VBEA 1IB4A 2NTQA 4W8RA 3B90A 3GQ8A 1OOCA 1OFLA 3B8YA 4HWVA 4XONA 2VJIA 2IQ7A 2O04A 4OZYA 4Z05A 2O17A 2NSTA 2Z8GA 1K5CA 1X0CA 5C1EA 1O88A 4I84A 2PECA 4YZXA 2X6YA 1BN8A 2X6WA 4YZQA 3ZSCA 4OJPA 1O8HA 1O8FA 1O8DA 4OJOA 4C2LA 2NT6A 3EQOA 2X6XA 2ODLA 1BHEA 1DBOA 4W8TA 1EE6A 2X3HA 1AIRA 2VBMA 2QY1A 2VJJA 4XR6A 3UW0A 1PLUA 1OGOX 4EW9A 3LMWA 4AVZA 4PMHA 3SUCA 3T9GA 3JURA 4W8QA 1OFMA 1O8LA 4XOPA 5AMVA 1DBGA 2EWEA 4XOTA 3FY3A 3VMWA 4MR0A 1NHCA 1JTAA 1CZFA 1WMRA 1GQ8A 2NZMA 2O1DA 2X85A 4XLFA 1O8EA 1O8MA 4MXNA 2UVFA 2NTBA 3VSTA 4OJLA 3GRHA 3GQ7A 4XLCA 2INUA 1O8KA 4URRA 1KCDA 1KCCA 4NK6A 4XLEA 4XL9A 1OGMX 1IDKA 1PE9A 3VMVA 1O8IA 2PYHA 5C1CA 1JRGA 1HG8A 4U4BA 4YEJA 1IA5A 4YZAA 3KRGA 3GQ9A 2O0WA 4Z03A 4OZZA 2UVEA 4YELA 4Z06A 4NK8A 4XKVA 4YZ0A 1QCXA 1O8GA 1KTWA 1QJVA 2QX3A 2NSPA 4OJ5A 3WWGA 1H80A 2VBKA 2PYGA 4XKWA 1RU4A 4XORA 1IDJA 1XG2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NTP A;  3GQA A;  3EQN A;  4OJ6 A;  4XMY A;  1RMG A;  4W8S A;  4XQF A;  3VSU A;  4XM3 A;  4U49 A;  2BSP A;  2INV A;  4XN3 A;  4XLA A;  4XN0 A;  4XLH A;  2NT9 A;  2QXZ A;  3B4N A;  2O0V A;  4XNF A;  3VSV A;  3ZPP A;  1RWR A;  1O8J A;  1PXZ A;  1VBL A;  2VBE A;  1IB4 A;  2NTQ A;  4W8R A;  3B90 A;  3GQ8 A;  1OOC A;  1OFL A;  3B8Y A;  4HWV A;  4XON A;  2VJI A;  2IQ7 A;  2O04 A;  4OZY A;  4Z05 A;  2O17 A;  2NST A;  2Z8G A;  1K5C A;  1X0C A;  5C1E A;  1O88 A;  4I84 A;  2PEC A;  4YZX A;  2X6Y A;  1BN8 A;  2X6W A;  4YZQ A;  3ZSC A;  4OJP A;  1O8H A;  1O8F A;  1O8D A;  4OJO A;  4C2L A;  2NT6 A;  3EQO A;  2X6X A;  2ODL A;  1BHE A;  1DBO A;  4W8T A;  1EE6 A;  2X3H A;  1AIR A;  2VBM A;  2QY1 A;  2VJJ A;  4XR6 A;  3UW0 A;  1PLU A;  1OGO X;  4EW9 A;  3LMW A;  4AVZ A;  4PMH A;  3SUC A;  3T9G A;  3JUR A;  4W8Q A;  1OFM A;  1O8L A;  4XOP A;  5AMV A;  1DBG A;  2EWE A;  4XOT A;  3FY3 A;  3VMW A;  4MR0 A;  1NHC A;  1JTA A;  1CZF A;  1WMR A;  1GQ8 A;  2NZM A;  2O1D A;  2X85 A;  4XLF A;  1O8E A;  1O8M A;  4MXN A;  2UVF A;  2NTB A;  3VST A;  4OJL A;  3GRH A;  3GQ7 A;  4XLC A;  2INU A;  1O8K A;  4URR A;  1KCD A;  1KCC A;  4NK6 A;  4XLE A;  4XL9 A;  1OGM X;  1IDK A;  1PE9 A;  3VMV A;  1O8I A;  2PYH A;  5C1C A;  1JRG A;  1HG8 A;  4U4B A;  4YEJ A;  1IA5 A;  4YZA A;  3KRG A;  3GQ9 A;  2O0W A;  4Z03 A;  4OZZ A;  2UVE A;  4YEL A;  4Z06 A;  4NK8 A;  4XKV A;  4YZ0 A;  1QCX A;  1O8G A;  1KTW A;  1QJV A;  2QX3 A;  2NSP A;  4OJ5 A;  3WWG A;  1H80 A;  2VBK A;  2PYG A;  4XKW A;  1RU4 A;  4XOR A;  1IDJ A;  1XG2 A; 
#chains in the Genus database with same CATH topology
 1K8F A;  2NTP A;  3GQA A;  3SQV A;  3EQN A;  4OJ6 A;  4XMY A;  1RMG A;  4W8S A;  4XQF A;  2QZA A;  3VSU A;  5JMC B;  2F3L A;  4XM3 A;  4U49 A;  2BSP A;  2INV A;  4XN3 A;  2VFN A;  4XLA A;  4XN0 A;  4XLH A;  2NT9 A;  2QXZ A;  3PET A;  3B4N A;  2VFQ A;  1QA1 A;  2XTX A;  4YCQ A;  2O0V A;  1TYW A;  4XNF A;  3VSV A;  3ZPP A;  1HF2 A;  3SY2 A;  1RWR A;  1O8J A;  1PXZ A;  1TYU A;  1VBL A;  2VBE A;  2O6W A;  3TH0 A;  2J8I A;  1IB4 A;  2NTQ A;  4W8R A;  3B90 A;  2XC1 A;  3LYC A;  3GQ8 A;  1OOC A;  1OFL A;  3B8Y A;  4HWV A;  3PSS A;  4XON A;  2VJI A;  2IQ7 A;  2O04 A;  4OZY A;  4Z05 A;  2O17 A;  2NST A;  2Z8G A;  2IOU G;  1X0C A;  5C1E A;  1K5C A;  3N90 A;  1EZG A;  4OPW A;  2G0Y A;  2VFP A;  1KQ5 A;  1O88 A;  1QQ1 A;  1QRC A;  2XT4 A;  2PEC A;  4I84 A;  3N6Z A;  3NAW A;  2XT2 A;  4YZX A;  5DNS A;  2X6Y A;  1BN8 A;  2X6W A;  4YZQ A;  3ZSC A;  4OJP A;  2YUH A;  1O8H A;  1O8F A;  4YFO A;  1O8D A;  4OJO A;  4C2L A;  2NT6 A;  3EQO A;  1TSP A;  1LLW A;  3JX8 A;  4YDT A;  2X6X A;  2ODL A;  1BHE A;  1DBO A;  3BH7 B;  4W8T A;  1EE6 A;  1L1I A;  2X3H A;  1AIR A;  2QY1 A;  2VBM A;  2VJJ A;  3P4G A;  4XR6 A;  1LLZ A;  5JLV C;  1QA3 A;  3UW0 A;  2B0R A;  1PLU A;  1OGO X;  4EW9 A;  3LJY A;  2VFM A;  3LMW A;  1OFD A;  4AVZ A;  4YEI A;  4PMH A;  3SUC A;  2BM7 A;  3JUR A;  4JRA C;  4W8Q A;  3T9G A;  1TYV A;  2BM6 A;  1OFM A;  1O8L A;  4XOP A;  5AMV A;  1DBG A;  1K4Z A;  2EWE A;  4XOT A;  2QYU A;  3FY3 A;  2V5I A;  1LM1 A;  3VMW A;  4MR0 A;  3SYJ A;  2VFO A;  1EA0 A;  1NHC A;  3H09 A;  4OM9 A;  1JTA A;  1CZF A;  1WMR A;  4KH3 A;  1CLW A;  4V02 C;  1GQ8 A;  3AK5 A;  2NZM A;  2O1D A;  1QRB A;  2X85 A;  3NB2 A;  2J8K A;  4XLF A;  1O8E A;  1O8M A;  4MXN A;  2UVF A;  3ML3 A;  2NTB A;  3VST A;  4OJL A;  3GRH A;  3GQ7 A;  4XLC A;  2INU A;  4YC5 A;  1O8K A;  4URR A;  3SZE A;  1KCD A;  1KCC A;  4NK6 A;  1TYX A;  1OFE A;  4XL9 A;  4XLE A;  1OGM X;  1IDK A;  2XTW A;  1PE9 A;  2BM4 A;  3VMV A;  1QA2 A;  1O8I A;  2PYH A;  5C1C A;  1JRG A;  2BM5 A;  1HG8 A;  4U4B A;  4YEJ A;  1IA5 A;  3BH6 B;  4YZA A;  3KRG A;  3RIQ A;  3GQ9 A;  3PSZ A;  2O0W A;  4Z03 A;  4OZZ A;  2UVE A;  4YEL A;  4Z06 A;  4NK8 A;  4XKV A;  2W7Z A;  4YZ0 A;  1QCX A;  1WXR A;  1O8G A;  1KTW A;  1QJV A;  2QX3 A;  2NSP A;  4OJ5 A;  3DU1 X;  3WWG A;  2BX6 A;  1DAB A;  1H80 A;  2VBK A;  2PYG A;  4XKW A;  1RU4 A;  4XOR A;  1IDJ A;  2XTY A;  1XG2 A; 
#chains in the Genus database with same CATH homology
 2NTP A;  3GQA A;  3EQN A;  4OJ6 A;  4XMY A;  1RMG A;  4W8S A;  4XQF A;  3VSU A;  4XM3 A;  4U49 A;  2BSP A;  2INV A;  4XN3 A;  4XLA A;  4XN0 A;  4XLH A;  2NT9 A;  2QXZ A;  3B4N A;  2O0V A;  4XNF A;  3VSV A;  3ZPP A;  1RWR A;  1O8J A;  1PXZ A;  1VBL A;  2VBE A;  1IB4 A;  2NTQ A;  4W8R A;  3B90 A;  3GQ8 A;  1OOC A;  1OFL A;  3B8Y A;  4HWV A;  4XON A;  2VJI A;  2IQ7 A;  2O04 A;  4OZY A;  4Z05 A;  2O17 A;  2NST A;  2Z8G A;  1K5C A;  1X0C A;  5C1E A;  1O88 A;  4I84 A;  2PEC A;  4YZX A;  2X6Y A;  1BN8 A;  2X6W A;  4YZQ A;  3ZSC A;  4OJP A;  1O8H A;  1O8F A;  1O8D A;  4OJO A;  4C2L A;  2NT6 A;  3EQO A;  2X6X A;  2ODL A;  1BHE A;  1DBO A;  4W8T A;  1EE6 A;  2X3H A;  1AIR A;  2VBM A;  2QY1 A;  2VJJ A;  4XR6 A;  3UW0 A;  1PLU A;  1OGO X;  4EW9 A;  3LMW A;  4AVZ A;  4PMH A;  3SUC A;  3T9G A;  3JUR A;  4W8Q A;  1OFM A;  1O8L A;  4XOP A;  5AMV A;  1DBG A;  2EWE A;  4XOT A;  3FY3 A;  3VMW A;  4MR0 A;  1NHC A;  1JTA A;  1CZF A;  1WMR A;  1GQ8 A;  2NZM A;  2O1D A;  2X85 A;  4XLF A;  1O8E A;  1O8M A;  4MXN A;  2UVF A;  2NTB A;  3VST A;  4OJL A;  3GRH A;  3GQ7 A;  4XLC A;  2INU A;  1O8K A;  4URR A;  1KCD A;  1KCC A;  4NK6 A;  4XLE A;  4XL9 A;  1OGM X;  1IDK A;  1PE9 A;  3VMV A;  1O8I A;  2PYH A;  5C1C A;  1JRG A;  1HG8 A;  4U4B A;  4YEJ A;  1IA5 A;  4YZA A;  3KRG A;  3GQ9 A;  2O0W A;  4Z03 A;  4OZZ A;  2UVE A;  4YEL A;  4Z06 A;  4NK8 A;  4XKV A;  4YZ0 A;  1QCX A;  1O8G A;  1KTW A;  1QJV A;  2QX3 A;  2NSP A;  4OJ5 A;  3WWG A;  1H80 A;  2VBK A;  2PYG A;  4XKW A;  1RU4 A;  4XOR A;  1IDJ A;  1XG2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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