4HWVA

Structure of pectate lyase from acidovorax avenae subsp citrulli
Total Genus 188
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
498
structure length
498
Chain Sequence
MDIGINSDPNSAAPAGSIDSLGATGWASHGTPTTGGQGAAAERTYTVANRNELIQALYGNTAVIAPDGSVQGTPDKAPKVIRIRGTIDLNVDGQLRPYTPDRYVAGSCASSVHGYASQASLWSDYLAAYRPGAWGNARTVSGKPEDARACAAELQRRVVTISVPDNTSLLGIGTDAKILHGNLMLGTPDAPVANIVIRNITFEDAFDDFPQWDPTDSSDGRWNSEYDLISVAHASHVWIDHNTFSDGDRHDHAFPSVWHETVHGTDYSGGDFKVQHHDGLVDVTRHGNYVTLSNNHFHDHDKAFLIGGTDVPGADSGNPRMLKVTFHGNHFQNLRQRQARVRYGMVHLYNNYYENTRDASADYPWLAGMTLGQSGKVHAENNVVSLAGPDRPARPADVANARISAARTQDCAALFSASECASTFYDSGTVLNGGPADLTAAVRWSSALAAAPAWKPSDFYDYTLEDTADLAARITARAGAGKLEGPAEPRKLAAALEH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
source organism Acidovorax citrulli
publication title 1.37 angstrom crystal structure of pathogenic factor pectate lyase from Acidovorax citrulli.
pubmed doi rcsb
molecule keywords Pectate lyase/Amb allergen
total genus 188
structure length 498
sequence length 498
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4hwvA00
4YEJA 2BSPA 1RWRA 1O8IA 1O88A 2INUA 3GQ8A 4XLFA 2NTPA 1O8GA 4URRA 4W8TA 2Z8GA 4XKVA 2PYHA 3B4NA 1O8MA 1IDKA 2X6YA 4YZAA 4I84A 4OJ5A 4XN0A 1NHCA 4OJPA 3VMWA 4YZQA 2QY1A 4XOPA 1QJVA 1EE6A 2O0VA 2VJIA 3B90A 3FY3A 2NTQA 2X6WA 1CZFA 4XNFA 4XQFA 3LMWA 2NSTA 4YELA 2ODLA 3VMVA 3VSTA 2O1DA 4OJOA 1IA5A 4U4BA 1QCXA 1XG2A 4XN3A 1JRGA 4MXNA 4MR0A 1KCDA 4OJLA 4Z05A 2X3HA 3GQAA 5AMVA 1OGMX 1X0CA 3WWGA 3ZPPA 2NT6A 2NZMA 1IB4A 5C1CA 4HWVA 2INVA 2QX3A 3JURA 2NTBA 1KTWA 4XLHA 3GQ9A 4PMHA 4XLEA 2EWEA 4W8SA 1OOCA 1H80A 3EQOA 4XKWA 2O0WA 1OFMA 4XL9A 1RU4A 2X6XA 1VBLA 4XORA 1O8KA 1IDJA 2O04A 4XR6A 1PE9A 4XLAA 4XM3A 2PYGA 1BN8A 1O8DA 1O8EA 3ZSCA 5C1EA 4EW9A 4U49A 1RMGA 4XMYA 1PXZA 2UVEA 3SUCA 1K5CA 2NT9A 1WMRA 4XOTA 3EQNA 3GRHA 1O8HA 4NK6A 4Z06A 2VBMA 3VSVA 3GQ7A 4OZYA 1PLUA 3VSUA 4Z03A 1OFLA 3B8YA 2IQ7A 1DBGA 4YZXA 1O8FA 1O8LA 3T9GA 2PECA 2VJJA 1AIRA 1JTAA 3KRGA 4OZZA 1O8JA 4XLCA 2UVFA 4YZ0A 4OJ6A 4NK8A 4XONA 2QXZA 1GQ8A 1DBOA 1HG8A 3UW0A 1OGOX 1KCCA 2VBKA 2X85A 2O17A 4AVZA 4W8RA 4C2LA 2VBEA 2NSPA 1BHEA 4W8QA
chains in the Genus database with same CATH superfamily
4YEJA 2B0RA 2BSPA 1RWRA 1TSPA 2QZAA 3LYCA 3PSSA 1O8IA 1O88A 2INUA 3GQ8A 4XLFA 1EA0A 2NTPA 1O8GA 2YUHA 2VFPA 4URRA 2Z8GA 4W8TA 2PYHA 3B4NA 4XKVA 4YC5A 1O8MA 5JLVC 1IDKA 1QA1A 2X6YA 3DU1X 4YZAA 1EZGA 4I84A 4OJ5A 2VFNA 4XN0A 1NHCA 4OJPA 3VMWA 4YZQA 2V5IA 2QY1A 2BX6A 3SY2A 3BH6B 4XOPA 1QJVA 1EE6A 2O0VA 3SQVA 3TH0A 2VJIA 3B90A 2XT2A 3FY3A 3ML3A 2NTQA 2X6WA 4OM9A 1CZFA 4XNFA 1K4ZA 4KH3A 3LMWA 3JX8A 4XQFA 2G0YA 2J8KA 2NSTA 2ODLA 4YELA 3VMVA 3PETA 1OFEA 3VSTA 2BM6A 2XTYA 2O1DA 3SYJA 4OJOA 1IA5A 2XTWA 1QCXA 1XG2A 2XT4A 4U4BA 4XN3A 1JRGA 4MXNA 4MR0A 1KCDA 3P4GA 4OJLA 4Z05A 3AK5A 2X3HA 3GQAA 5AMVA 5JMCB 1OGMX 1X0CA 3N6ZA 1TYXA 4V02C 3WWGA 3ZPPA 2NT6A 2NZMA 1IB4A 5C1CA 4YEIA 1CLWA 1LM1A 4HWVA 2INVA 2QX3A 3JURA 1KTWA 2NTBA 1QA2A 4YCQA 4XLHA 1TYUA 3GQ9A 2VFQA 4PMHA 2VFOA 4XLEA 2XC1A 2F3LA 2EWEA 4OPWA 4W8SA 1OOCA 1H80A 1KQ5A 3EQOA 4XKWA 2O0WA 1OFMA 2BM4A 4XL9A 3LJYA 1RU4A 2X6XA 1VBLA 1HF2A 3PSZA 4YFOA 3SZEA 4XORA 2O6WA 1O8KA 2W7ZA 1IDJA 1QRBA 2BM5A 2IOUG 2O04A 4XR6A 3RIQA 1PE9A 3H09A 4XLAA 4JRAC 4XM3A 2PYGA 1BN8A 1O8DA 1O8EA 3ZSCA 1LLZA 5C1EA 4EW9A 4U49A 1RMGA 4XMYA 1PXZA 3NAWA 2UVEA 3SUCA 1K5CA 1LLWA 1TYVA 1WMRA 2NT9A 4XOTA 2VFMA 3EQNA 3GRHA 2XTXA 2BM7A 1O8HA 4NK6A 4Z06A 2VBMA 1K8FA 1OFDA 2J8IA 3VSVA 1DABA 3GQ7A 4OZYA 1PLUA 1WXRA 1L1IA 3VSUA 4Z03A 1OFLA 3B8YA 2IQ7A 1DBGA 4YZXA 1O8FA 1O8LA 3T9GA 2PECA 2VJJA 1AIRA 1JTAA 3KRGA 4OZZA 1O8JA 3N90A 4XLCA 2UVFA 3NB2A 4YZ0A 4OJ6A 4NK8A 2QYUA 2QXZA 4XONA 1GQ8A 1DBOA 1QQ1A 1TYWA 1HG8A 1QA3A 3UW0A 4YDTA 1OGOX 1KCCA 3BH7B 5DNSA 2VBKA 2X85A 2O17A 1QRCA 4W8RA 4AVZA 4C2LA 2VBEA 2NSPA 1BHEA 4W8QA
chains in the Genus database with same CATH topology
4YEJA 2BSPA 1RWRA 1O8IA 1O88A 2INUA 3GQ8A 4XLFA 2NTPA 1O8GA 4URRA 4W8TA 2Z8GA 4XKVA 2PYHA 3B4NA 1O8MA 1IDKA 2X6YA 4YZAA 4I84A 4OJ5A 4XN0A 1NHCA 4OJPA 3VMWA 4YZQA 2QY1A 4XOPA 1QJVA 1EE6A 2O0VA 2VJIA 3B90A 3FY3A 2NTQA 2X6WA 1CZFA 4XNFA 4XQFA 3LMWA 2NSTA 4YELA 2ODLA 3VMVA 3VSTA 2O1DA 4OJOA 1IA5A 4U4BA 1QCXA 1XG2A 4XN3A 1JRGA 4MXNA 4MR0A 1KCDA 4OJLA 4Z05A 2X3HA 3GQAA 5AMVA 1OGMX 1X0CA 3WWGA 3ZPPA 2NT6A 2NZMA 1IB4A 5C1CA 4HWVA 2INVA 2QX3A 3JURA 2NTBA 1KTWA 4XLHA 3GQ9A 4PMHA 4XLEA 2EWEA 4W8SA 1OOCA 1H80A 3EQOA 4XKWA 2O0WA 1OFMA 4XL9A 1RU4A 2X6XA 1VBLA 4XORA 1O8KA 1IDJA 2O04A 4XR6A 1PE9A 4XLAA 4XM3A 2PYGA 1BN8A 1O8DA 1O8EA 3ZSCA 5C1EA 4EW9A 4U49A 1RMGA 4XMYA 1PXZA 2UVEA 3SUCA 1K5CA 2NT9A 1WMRA 4XOTA 3EQNA 3GRHA 1O8HA 4NK6A 4Z06A 2VBMA 3VSVA 3GQ7A 4OZYA 1PLUA 3VSUA 4Z03A 1OFLA 3B8YA 2IQ7A 1DBGA 4YZXA 1O8FA 1O8LA 3T9GA 2PECA 2VJJA 1AIRA 1JTAA 3KRGA 4OZZA 1O8JA 4XLCA 2UVFA 4YZ0A 4OJ6A 4NK8A 4XONA 2QXZA 1GQ8A 1DBOA 1HG8A 3UW0A 1OGOX 1KCCA 2VBKA 2X85A 2O17A 4AVZA 4W8RA 4C2LA 2VBEA 2NSPA 1BHEA 4W8QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YEJ A;  2BSP A;  1RWR A;  1O8I A;  1O88 A;  2INU A;  3GQ8 A;  4XLF A;  2NTP A;  1O8G A;  4URR A;  4W8T A;  2Z8G A;  4XKV A;  2PYH A;  3B4N A;  1O8M A;  1IDK A;  2X6Y A;  4YZA A;  4I84 A;  4OJ5 A;  4XN0 A;  1NHC A;  4OJP A;  3VMW A;  4YZQ A;  2QY1 A;  4XOP A;  1QJV A;  1EE6 A;  2O0V A;  2VJI A;  3B90 A;  3FY3 A;  2NTQ A;  2X6W A;  1CZF A;  4XNF A;  4XQF A;  3LMW A;  2NST A;  4YEL A;  2ODL A;  3VMV A;  3VST A;  2O1D A;  4OJO A;  1IA5 A;  4U4B A;  1QCX A;  1XG2 A;  4XN3 A;  1JRG A;  4MXN A;  4MR0 A;  1KCD A;  4OJL A;  4Z05 A;  2X3H A;  3GQA A;  5AMV A;  1OGM X;  1X0C A;  3WWG A;  3ZPP A;  2NT6 A;  2NZM A;  1IB4 A;  5C1C A;  4HWV A;  2INV A;  2QX3 A;  3JUR A;  2NTB A;  1KTW A;  4XLH A;  3GQ9 A;  4PMH A;  4XLE A;  2EWE A;  4W8S A;  1OOC A;  1H80 A;  3EQO A;  4XKW A;  2O0W A;  1OFM A;  4XL9 A;  1RU4 A;  2X6X A;  1VBL A;  4XOR A;  1O8K A;  1IDJ A;  2O04 A;  4XR6 A;  1PE9 A;  4XLA A;  4XM3 A;  2PYG A;  1BN8 A;  1O8D A;  1O8E A;  3ZSC A;  5C1E A;  4EW9 A;  4U49 A;  1RMG A;  4XMY A;  1PXZ A;  2UVE A;  3SUC A;  1K5C A;  2NT9 A;  1WMR A;  4XOT A;  3EQN A;  3GRH A;  1O8H A;  4NK6 A;  4Z06 A;  2VBM A;  3VSV A;  3GQ7 A;  4OZY A;  1PLU A;  3VSU A;  4Z03 A;  1OFL A;  3B8Y A;  2IQ7 A;  1DBG A;  4YZX A;  1O8F A;  1O8L A;  3T9G A;  2PEC A;  2VJJ A;  1AIR A;  1JTA A;  3KRG A;  4OZZ A;  1O8J A;  4XLC A;  2UVF A;  4YZ0 A;  4OJ6 A;  4NK8 A;  4XON A;  2QXZ A;  1GQ8 A;  1DBO A;  1HG8 A;  3UW0 A;  1OGO X;  1KCC A;  2VBK A;  2X85 A;  2O17 A;  4AVZ A;  4W8R A;  4C2L A;  2VBE A;  2NSP A;  1BHE A;  4W8Q A; 
#chains in the Genus database with same CATH topology
 4YEJ A;  2B0R A;  2BSP A;  1RWR A;  1TSP A;  2QZA A;  3LYC A;  3PSS A;  1O8I A;  1O88 A;  2INU A;  3GQ8 A;  4XLF A;  1EA0 A;  2NTP A;  1O8G A;  2YUH A;  2VFP A;  4URR A;  2Z8G A;  4W8T A;  2PYH A;  3B4N A;  4XKV A;  4YC5 A;  1O8M A;  5JLV C;  1IDK A;  1QA1 A;  2X6Y A;  3DU1 X;  4YZA A;  1EZG A;  4I84 A;  4OJ5 A;  2VFN A;  4XN0 A;  1NHC A;  4OJP A;  3VMW A;  4YZQ A;  2V5I A;  2QY1 A;  2BX6 A;  3SY2 A;  3BH6 B;  4XOP A;  1QJV A;  1EE6 A;  2O0V A;  3SQV A;  3TH0 A;  2VJI A;  3B90 A;  2XT2 A;  3FY3 A;  3ML3 A;  2NTQ A;  2X6W A;  4OM9 A;  1CZF A;  4XNF A;  1K4Z A;  4KH3 A;  3LMW A;  3JX8 A;  4XQF A;  2G0Y A;  2J8K A;  2NST A;  2ODL A;  4YEL A;  3VMV A;  3PET A;  1OFE A;  3VST A;  2BM6 A;  2XTY A;  2O1D A;  3SYJ A;  4OJO A;  1IA5 A;  2XTW A;  1QCX A;  1XG2 A;  2XT4 A;  4U4B A;  4XN3 A;  1JRG A;  4MXN A;  4MR0 A;  1KCD A;  3P4G A;  4OJL A;  4Z05 A;  3AK5 A;  2X3H A;  3GQA A;  5AMV A;  5JMC B;  1OGM X;  1X0C A;  3N6Z A;  1TYX A;  4V02 C;  3WWG A;  3ZPP A;  2NT6 A;  2NZM A;  1IB4 A;  5C1C A;  4YEI A;  1CLW A;  1LM1 A;  4HWV A;  2INV A;  2QX3 A;  3JUR A;  1KTW A;  2NTB A;  1QA2 A;  4YCQ A;  4XLH A;  1TYU A;  3GQ9 A;  2VFQ A;  4PMH A;  2VFO A;  4XLE A;  2XC1 A;  2F3L A;  2EWE A;  4OPW A;  4W8S A;  1OOC A;  1H80 A;  1KQ5 A;  3EQO A;  4XKW A;  2O0W A;  1OFM A;  2BM4 A;  4XL9 A;  3LJY A;  1RU4 A;  2X6X A;  1VBL A;  1HF2 A;  3PSZ A;  4YFO A;  3SZE A;  4XOR A;  2O6W A;  1O8K A;  2W7Z A;  1IDJ A;  1QRB A;  2BM5 A;  2IOU G;  2O04 A;  4XR6 A;  3RIQ A;  1PE9 A;  3H09 A;  4XLA A;  4JRA C;  4XM3 A;  2PYG A;  1BN8 A;  1O8D A;  1O8E A;  3ZSC A;  1LLZ A;  5C1E A;  4EW9 A;  4U49 A;  1RMG A;  4XMY A;  1PXZ A;  3NAW A;  2UVE A;  3SUC A;  1K5C A;  1LLW A;  1TYV A;  1WMR A;  2NT9 A;  4XOT A;  2VFM A;  3EQN A;  3GRH A;  2XTX A;  2BM7 A;  1O8H A;  4NK6 A;  4Z06 A;  2VBM A;  1K8F A;  1OFD A;  2J8I A;  3VSV A;  1DAB A;  3GQ7 A;  4OZY A;  1PLU A;  1WXR A;  1L1I A;  3VSU A;  4Z03 A;  1OFL A;  3B8Y A;  2IQ7 A;  1DBG A;  4YZX A;  1O8F A;  1O8L A;  3T9G A;  2PEC A;  2VJJ A;  1AIR A;  1JTA A;  3KRG A;  4OZZ A;  1O8J A;  3N90 A;  4XLC A;  2UVF A;  3NB2 A;  4YZ0 A;  4OJ6 A;  4NK8 A;  2QYU A;  2QXZ A;  4XON A;  1GQ8 A;  1DBO A;  1QQ1 A;  1TYW A;  1HG8 A;  1QA3 A;  3UW0 A;  4YDT A;  1OGO X;  1KCC A;  3BH7 B;  5DNS A;  2VBK A;  2X85 A;  2O17 A;  1QRC A;  4W8R A;  4AVZ A;  4C2L A;  2VBE A;  2NSP A;  1BHE A;  4W8Q A; 
#chains in the Genus database with same CATH homology
 4YEJ A;  2BSP A;  1RWR A;  1O8I A;  1O88 A;  2INU A;  3GQ8 A;  4XLF A;  2NTP A;  1O8G A;  4URR A;  4W8T A;  2Z8G A;  4XKV A;  2PYH A;  3B4N A;  1O8M A;  1IDK A;  2X6Y A;  4YZA A;  4I84 A;  4OJ5 A;  4XN0 A;  1NHC A;  4OJP A;  3VMW A;  4YZQ A;  2QY1 A;  4XOP A;  1QJV A;  1EE6 A;  2O0V A;  2VJI A;  3B90 A;  3FY3 A;  2NTQ A;  2X6W A;  1CZF A;  4XNF A;  4XQF A;  3LMW A;  2NST A;  4YEL A;  2ODL A;  3VMV A;  3VST A;  2O1D A;  4OJO A;  1IA5 A;  4U4B A;  1QCX A;  1XG2 A;  4XN3 A;  1JRG A;  4MXN A;  4MR0 A;  1KCD A;  4OJL A;  4Z05 A;  2X3H A;  3GQA A;  5AMV A;  1OGM X;  1X0C A;  3WWG A;  3ZPP A;  2NT6 A;  2NZM A;  1IB4 A;  5C1C A;  4HWV A;  2INV A;  2QX3 A;  3JUR A;  2NTB A;  1KTW A;  4XLH A;  3GQ9 A;  4PMH A;  4XLE A;  2EWE A;  4W8S A;  1OOC A;  1H80 A;  3EQO A;  4XKW A;  2O0W A;  1OFM A;  4XL9 A;  1RU4 A;  2X6X A;  1VBL A;  4XOR A;  1O8K A;  1IDJ A;  2O04 A;  4XR6 A;  1PE9 A;  4XLA A;  4XM3 A;  2PYG A;  1BN8 A;  1O8D A;  1O8E A;  3ZSC A;  5C1E A;  4EW9 A;  4U49 A;  1RMG A;  4XMY A;  1PXZ A;  2UVE A;  3SUC A;  1K5C A;  2NT9 A;  1WMR A;  4XOT A;  3EQN A;  3GRH A;  1O8H A;  4NK6 A;  4Z06 A;  2VBM A;  3VSV A;  3GQ7 A;  4OZY A;  1PLU A;  3VSU A;  4Z03 A;  1OFL A;  3B8Y A;  2IQ7 A;  1DBG A;  4YZX A;  1O8F A;  1O8L A;  3T9G A;  2PEC A;  2VJJ A;  1AIR A;  1JTA A;  3KRG A;  4OZZ A;  1O8J A;  4XLC A;  2UVF A;  4YZ0 A;  4OJ6 A;  4NK8 A;  4XON A;  2QXZ A;  1GQ8 A;  1DBO A;  1HG8 A;  3UW0 A;  1OGO X;  1KCC A;  2VBK A;  2X85 A;  2O17 A;  4AVZ A;  4W8R A;  4C2L A;  2VBE A;  2NSP A;  1BHE A;  4W8Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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