1TYXA

Title of tailspike-protein
Total Genus 192
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
sequence length
554
structure length
543
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral adhesion protein
molecule keywords TAILSPIKE PROTEIN
publication title Crystal structure of phage P22 tailspike protein complexed with Salmonella sp. O-antigen receptors.
pubmed doi rcsb
source organism Enterobacteria phage p22
total genus 192
structure length 543
sequence length 554
ec nomenclature
pdb deposition date 1996-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1tyxA00
4OM9A 3RIQA 1TYUA 1QA2A 1WXRA 1QRCA 4KH3A 2VFQA 1QQ1A 1DABA 2VFMA 2XC1A 3SYJA 3H09A 3ML3A 1TYWA 1TYXA 1CLWA 3AK5A 2V5IA 2VFPA 3TH0A 1TSPA 1QRBA 2VFOA 1QA3A 1QA1A 3SZEA 1TYVA 2VFNA 2IOUG
chains in the Genus database with same CATH superfamily
1DBGA 3EQOA 4I84A 4U49A 3GQ9A 2NTQA 2UVEA 2VBMA 2XTXA 3EQNA 4YDTA 3VSTA 3GQAA 1K5CA 2Z8GA 1WXRA 1PLUA 4MR0A 4KH3A 2VFQA 1X0CA 2VBKA 2INUA 2NSTA 1RU4A 3VSUA 1O8JA 2O04A 2J8KA 3B90A 1LM1A 5DNSA 3LJYA 3P4GA 1GQ8A 4YEIA 3T9GA 2B0RA 1CLWA 3AK5A 2V5IA 3SY2A 3VSVA 3TH0A 2NT6A 1VBLA 1TSPA 4XKWA 4Z05A 1O8LA 3VMWA 1O8FA 4NK8A 1JTAA 2INVA 2X6WA 1OFLA 2NSPA 2NTBA 2ODLA 4W8SA 1OGMX 4YZAA 1K8FA 1CZFA 1OGOX 1H80A 4Z06A 2PYHA 2PECA 2XTYA 3PSSA 4OZZA 4W8QA 2QYUA 3PETA 4NK6A 4XOTA 1PE9A 1WMRA 1QRCA 2XTWA 2QXZA 2EWEA 2YUHA 1QCXA 4OZYA 4XLHA 4OJ6A 4XR6A 4XN0A 3NAWA 4XLEA 3PSZA 2BX6A 2X6YA 4XONA 4XQFA 4YC5A 4OJ5A 1O8HA 2PYGA 1K4ZA 3BH6B 1O8MA 1RWRA 5C1EA 5C1CA 2X3HA 1O88A 4XORA 1AIRA 3VMVA 1QA3A 1HG8A 2O6WA 2O0WA 2VJJA 4OJOA 2XT2A 5JLVC 2BM5A 4XL9A 1LLWA 2VFNA 3NB2A 4Z03A 4XOPA 4EW9A 4W8RA 4XLCA 2QX3A 3LMWA 2BM6A 1IDJA 4YZXA 1TYUA 2VJIA 3SQVA 1O8GA 1IB4A 1OFEA 2X6XA 4URRA 1IDKA 1KCCA 1EA0A 2VBEA 3JX8A 4XMYA 4YEJA 1OFMA 2QZAA 3WWGA 4MXNA 3LYCA 3SYJA 3H09A 2X85A 1DBOA 3B4NA 5JMCB 1XG2A 2J8IA 3DU1X 4PMHA 2O0VA 1L1IA 1RMGA 1KCDA 1OFDA 2O17A 1QRBA 2QY1A 4XN3A 4YCQA 3JURA 3SZEA 4YELA 3N6ZA 4OJPA 2IOUG 3GQ8A 3N90A 1PXZA 4XLAA 4OM9A 3UW0A 1EZGA 1O8KA 3BH7B 3RIQA 1QJVA 2G0YA 3FY3A 4AVZA 2BSPA 1QA2A 1O8DA 4YFOA 2BM4A 4C2LA 1KTWA 1BHEA 2W7ZA 1OOCA 1LLZA 1EE6A 2UVFA 1QQ1A 4U4BA 4XM3A 2NZMA 1DABA 2VFMA 3SUCA 2XC1A 3ZPPA 1O8EA 2NT9A 3ML3A 1TYWA 1TYXA 4HWVA 1BN8A 2VFPA 5AMVA 1JRGA 3GQ7A 4XKVA 2F3LA 4YZ0A 4JRAC 4W8TA 1KQ5A 2BM7A 4XLFA 4YZQA 3ZSCA 4OPWA 2O1DA 4V02C 2VFOA 3B8YA 3GRHA 1HF2A 1QA1A 1NHCA 2NTPA 1IA5A 2IQ7A 4OJLA 3KRGA 1TYVA 2XT4A 1O8IA 4XNFA
chains in the Genus database with same CATH topology
3N90A 4OM9A 3RIQA 3BH7B 3PETA 2BM6A 2G0YA 1TYUA 1QA2A 1WXRA 1QRCA 2BM4A 4KH3A 2YUHA 2W7ZA 2VFQA 3JX8A 5JLVC 1QQ1A 4OJ6A 1K8FA 2BX6A 2VFMA 3LYCA 2XC1A 3SYJA 1DABA 3H09A 3LJYA 3ML3A 3P4GA 4OJ5A 5JMCB 1TYWA 1TYXA 1CLWA 2B0RA 3AK5A 1K4ZA 2V5IA 2J8IA 2VFPA 3BH6B 3TH0A 1TSPA 2F3LA 4JRAC 1KQ5A 2BM7A 1QRBA 4OPWA 4V02C 2VFOA 1QA3A 1HF2A 1QA1A 4OJOA 4OJLA 3N6ZA 3SZEA 1TYVA 2BM5A 2VFNA 4OJPA 2IOUG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OM9 A;  3RIQ A;  1TYU A;  1QA2 A;  1WXR A;  1QRC A;  4KH3 A;  2VFQ A;  1QQ1 A;  1DAB A;  2VFM A;  2XC1 A;  3SYJ A;  3H09 A;  3ML3 A;  1TYW A;  1TYX A;  1CLW A;  3AK5 A;  2V5I A;  2VFP A;  3TH0 A;  1TSP A;  1QRB A;  2VFO A;  1QA3 A;  1QA1 A;  3SZE A;  1TYV A;  2VFN A;  2IOU G; 
#chains in the Genus database with same CATH topology
 1DBG A;  3EQO A;  4I84 A;  4U49 A;  3GQ9 A;  2NTQ A;  2UVE A;  2VBM A;  2XTX A;  3EQN A;  4YDT A;  3VST A;  3GQA A;  1K5C A;  2Z8G A;  1WXR A;  1PLU A;  4MR0 A;  4KH3 A;  2VFQ A;  1X0C A;  2VBK A;  2INU A;  2NST A;  1RU4 A;  3VSU A;  1O8J A;  2O04 A;  2J8K A;  3B90 A;  1LM1 A;  5DNS A;  3LJY A;  3P4G A;  1GQ8 A;  4YEI A;  3T9G A;  2B0R A;  1CLW A;  3AK5 A;  2V5I A;  3SY2 A;  3VSV A;  3TH0 A;  2NT6 A;  1VBL A;  1TSP A;  4XKW A;  4Z05 A;  1O8L A;  3VMW A;  1O8F A;  4NK8 A;  1JTA A;  2INV A;  2X6W A;  1OFL A;  2NSP A;  2NTB A;  2ODL A;  4W8S A;  1OGM X;  4YZA A;  1K8F A;  1CZF A;  1OGO X;  1H80 A;  4Z06 A;  2PYH A;  2PEC A;  2XTY A;  3PSS A;  4OZZ A;  4W8Q A;  2QYU A;  3PET A;  4NK6 A;  4XOT A;  1PE9 A;  1WMR A;  1QRC A;  2XTW A;  2QXZ A;  2EWE A;  2YUH A;  1QCX A;  4OZY A;  4XLH A;  4OJ6 A;  4XR6 A;  4XN0 A;  3NAW A;  4XLE A;  3PSZ A;  2BX6 A;  2X6Y A;  4XON A;  4XQF A;  4YC5 A;  4OJ5 A;  1O8H A;  2PYG A;  1K4Z A;  3BH6 B;  1O8M A;  1RWR A;  5C1E A;  5C1C A;  2X3H A;  1O88 A;  4XOR A;  1AIR A;  3VMV A;  1QA3 A;  1HG8 A;  2O6W A;  2O0W A;  2VJJ A;  4OJO A;  2XT2 A;  5JLV C;  2BM5 A;  4XL9 A;  1LLW A;  2VFN A;  3NB2 A;  4Z03 A;  4XOP A;  4EW9 A;  4W8R A;  4XLC A;  2QX3 A;  3LMW A;  2BM6 A;  1IDJ A;  4YZX A;  1TYU A;  2VJI A;  3SQV A;  1O8G A;  1IB4 A;  1OFE A;  2X6X A;  4URR A;  1IDK A;  1KCC A;  1EA0 A;  2VBE A;  3JX8 A;  4XMY A;  4YEJ A;  1OFM A;  2QZA A;  3WWG A;  4MXN A;  3LYC A;  3SYJ A;  3H09 A;  2X85 A;  1DBO A;  3B4N A;  5JMC B;  1XG2 A;  2J8I A;  3DU1 X;  4PMH A;  2O0V A;  1L1I A;  1RMG A;  1KCD A;  1OFD A;  2O17 A;  1QRB A;  2QY1 A;  4XN3 A;  4YCQ A;  3JUR A;  3SZE A;  4YEL A;  3N6Z A;  4OJP A;  2IOU G;  3GQ8 A;  3N90 A;  1PXZ A;  4XLA A;  4OM9 A;  3UW0 A;  1EZG A;  1O8K A;  3BH7 B;  3RIQ A;  1QJV A;  2G0Y A;  3FY3 A;  4AVZ A;  2BSP A;  1QA2 A;  1O8D A;  4YFO A;  2BM4 A;  4C2L A;  1KTW A;  1BHE A;  2W7Z A;  1OOC A;  1LLZ A;  1EE6 A;  2UVF A;  1QQ1 A;  4U4B A;  4XM3 A;  2NZM A;  1DAB A;  2VFM A;  3SUC A;  2XC1 A;  3ZPP A;  1O8E A;  2NT9 A;  3ML3 A;  1TYW A;  1TYX A;  4HWV A;  1BN8 A;  2VFP A;  5AMV A;  1JRG A;  3GQ7 A;  4XKV A;  2F3L A;  4YZ0 A;  4JRA C;  4W8T A;  1KQ5 A;  2BM7 A;  4XLF A;  4YZQ A;  3ZSC A;  4OPW A;  2O1D A;  4V02 C;  2VFO A;  3B8Y A;  3GRH A;  1HF2 A;  1QA1 A;  1NHC A;  2NTP A;  1IA5 A;  2IQ7 A;  4OJL A;  3KRG A;  1TYV A;  2XT4 A;  1O8I A;  4XNF A; 
#chains in the Genus database with same CATH homology
 3N90 A;  4OM9 A;  3RIQ A;  3BH7 B;  3PET A;  2BM6 A;  2G0Y A;  1TYU A;  1QA2 A;  1WXR A;  1QRC A;  2BM4 A;  4KH3 A;  2YUH A;  2W7Z A;  2VFQ A;  3JX8 A;  5JLV C;  1QQ1 A;  4OJ6 A;  1K8F A;  2BX6 A;  2VFM A;  3LYC A;  2XC1 A;  3SYJ A;  1DAB A;  3H09 A;  3LJY A;  3ML3 A;  3P4G A;  4OJ5 A;  5JMC B;  1TYW A;  1TYX A;  1CLW A;  2B0R A;  3AK5 A;  1K4Z A;  2V5I A;  2J8I A;  2VFP A;  3BH6 B;  3TH0 A;  1TSP A;  2F3L A;  4JRA C;  1KQ5 A;  2BM7 A;  1QRB A;  4OPW A;  4V02 C;  2VFO A;  1QA3 A;  1HF2 A;  1QA1 A;  4OJO A;  4OJL A;  3N6Z A;  3SZE A;  1TYV A;  2BM5 A;  2VFN A;  4OJP A;  2IOU G; 
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similar chains in the pdb database (?% sequence similarity)

 
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