4Z03A

C. bescii family 3 pectate lyase double mutant k108a in complex with trigalacturonic acid
Total Genus 85
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
195
structure length
195
Chain Sequence
GTNTGGVLVITDTIIVKSGQTYDGKGIKIIAQGMGDGSQSENQKPIFKLEKGANLKNVIIGAPGCDGIHCYGDNVVENVVWEDVGEDALTVKSEGVVEVIGGSAKEAADAVFQLNAPCTFKVKNFTATNIGKLVRQNGNTTFKVVIYLEDVTLNNVKSCVAKSDSPVSELWYHNLNVNNCKTLFEFPSQSQIHQY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Lyase
source organism Caldicellulosiruptor bescii (strain atcc baa-1888 / dsm 6725 / z-1320)
publication title The catalytic mechanism and unique low pH optimum of Caldicellulosiruptor bescii family 3 pectate lyase.
pubmed doi rcsb
molecule keywords Pectate lyase
total genus 85
structure length 195
sequence length 195
chains with identical sequence B
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2015-03-25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4z03A00
4W8QA 2NT9A 1IDJA 4EW9A 2VJJA 1O88A 4YZXA 1O8GA 4OJLA 1O8HA 3UW0A 4YZ0A 1KCCA 1QJVA 2NTPA 3GQAA 2BSPA 4W8SA 2O0VA 3VSUA 2O0WA 4Z05A 1K5CA 1BN8A 2X3HA 1IA5A 4C2LA 1O8KA 2UVFA 4XLHA 1HG8A 4XLCA 4XN3A 3LMWA 2O17A 4XN0A 4XONA 4PMHA 3ZPPA 3GQ7A 2X6YA 2INVA 4U49A 3B8YA 4HWVA 4MXNA 4XLFA 3GRHA 4OJOA 4YELA 4Z06A 3VSTA 4OZZA 2O1DA 4XORA 1O8LA 4MR0A 3VSVA 2PYGA 5AMVA 3B4NA 1OFLA 1RMGA 2QX3A 2VBEA 3KRGA 1IB4A 1OGOX 4W8RA 2QXZA 3GQ9A 4AVZA 1PXZA 3EQNA 3GQ8A 3VMVA 1O8DA 2NT6A 2EWEA 1CZFA 1OFMA 4XL9A 4XNFA 1EE6A 1QCXA 4NK6A 3T9GA 1WMRA 1VBLA 2NSPA 2NTQA 4YZQA 1H80A 4U4BA 1JRGA 1KTWA 1KCDA 3WWGA 2NTBA 3FY3A 2PECA 4YZAA 1IDKA 2NZMA 1JTAA 1AIRA 1O8MA 2PYHA 2VBKA 1O8IA 4XR6A 3JURA 4XM3A 4XMYA 2ODLA 4OJPA 2X6WA 1O8EA 2IQ7A 4OJ5A 1BHEA 2O04A 2QY1A 3VMWA 4I84A 4XKVA 1DBOA 1NHCA 2VBMA 1X0CA 2VJIA 1OGMX 2INUA 1XG2A 2Z8GA 4URRA 1O8FA 5C1EA 4NK8A 3EQOA 1DBGA 1OOCA 1GQ8A 4XLEA 4XOPA 4Z03A 3B90A 1RWRA 4XKWA 4OZYA 4XQFA 4XOTA 3SUCA 4YEJA 1PE9A 1RU4A 1O8JA 4XLAA 5C1CA 4W8TA 3ZSCA 4OJ6A 2X85A 2UVEA 1PLUA 2X6XA 2NSTA
chains in the Genus database with same CATH superfamily
4W8QA 2NT9A 1IDJA 5DNSA 3RIQA 4EW9A 1HF2A 2VJJA 1O88A 4YZXA 1O8GA 1TYVA 4OJLA 1O8HA 3UW0A 4YZ0A 4YCQA 1KCCA 1QJVA 2NTPA 3GQAA 2BSPA 4W8SA 2O0VA 3VSUA 1QA3A 2O0WA 4Z05A 1K5CA 1WXRA 3N6ZA 1BN8A 2X3HA 2XTWA 1IA5A 4C2LA 1O8KA 5JLVC 2UVFA 4XLHA 3LYCA 1HG8A 4XLCA 4XN3A 3SYJA 3LMWA 2O17A 1QA2A 2BX6A 4XN0A 4XONA 4PMHA 2O6WA 3ZPPA 3GQ7A 2X6YA 2INVA 1TSPA 2VFPA 4U49A 2VFMA 2XT2A 1L1IA 1LM1A 3B8YA 4HWVA 4MXNA 1OFDA 2G0YA 3GRHA 4OJOA 4XLFA 4YELA 4OZZA 4Z06A 2O1DA 4KH3A 3VSTA 4XORA 1O8LA 2XT4A 4MR0A 4YDTA 3VSVA 1EZGA 2PYGA 5AMVA 3B4NA 1OFLA 1RMGA 2J8IA 2QX3A 2VBEA 2W7ZA 3KRGA 1IB4A 2BM7A 1OGOX 1K8FA 4W8RA 2QXZA 3SZEA 3SY2A 3GQ9A 4AVZA 3AK5A 1TYXA 1PXZA 3BH7B 2BM5A 2VFOA 3EQNA 1O8DA 2NT6A 2EWEA 2XTYA 1CZFA 3GQ8A 3VMVA 1OFMA 4XL9A 4XNFA 1EE6A 3NAWA 1QCXA 1TYUA 3JX8A 4NK6A 3T9GA 3NB2A 4JRAC 3PETA 1WMRA 1LLZA 1QRCA 1VBLA 2NSPA 2NTQA 4YZQA 1H80A 4U4BA 1JRGA 1KTWA 2V5IA 1KCDA 3WWGA 2NTBA 1KQ5A 3FY3A 2QYUA 2PECA 4YZAA 1IDKA 2B0RA 2NZMA 1JTAA 1AIRA 1O8MA 2PYHA 2VBKA 1QRBA 1O8IA 4XR6A 3JURA 3N90A 4XM3A 4XMYA 2BM4A 2ODLA 4OJPA 2X6WA 1O8EA 2IQ7A 4OJ5A 1BHEA 2O04A 2QY1A 3VMWA 4OPWA 4YC5A 1CLWA 2J8KA 1DBOA 4I84A 4XKVA 1NHCA 2VBMA 2IOUG 1X0CA 3PSSA 3DU1X 2VJIA 1OGMX 3SQVA 1DABA 2INUA 1XG2A 3BH6B 4YFOA 2Z8GA 1LLWA 2XTXA 3H09A 3PSZA 1O8FA 2VFNA 4V02C 4URRA 4OM9A 5C1EA 4NK8A 1K4ZA 1DBGA 3EQOA 1OOCA 3P4GA 3TH0A 1GQ8A 4XLEA 2VFQA 4XOPA 4YEIA 4Z03A 3B90A 1RWRA 4XKWA 1QA1A 4OZYA 1QQ1A 4XQFA 4XOTA 2QZAA 3SUCA 5JMCB 4YEJA 1OFEA 1PE9A 1RU4A 3LJYA 2XC1A 1O8JA 4XLAA 5C1CA 1PLUA 4W8TA 3ZSCA 1EA0A 4OJ6A 2BM6A 3ML3A 2X85A 2YUHA 2UVEA 1TYWA 2F3LA 2X6XA 2NSTA
chains in the Genus database with same CATH topology
4W8QA 2NT9A 1IDJA 4EW9A 2VJJA 1O88A 4YZXA 1O8GA 4OJLA 1O8HA 3UW0A 4YZ0A 1KCCA 1QJVA 2NTPA 3GQAA 2BSPA 4W8SA 2O0VA 3VSUA 2O0WA 4Z05A 1K5CA 1BN8A 2X3HA 1IA5A 4C2LA 1O8KA 2UVFA 4XLHA 1HG8A 4XLCA 4XN3A 3LMWA 2O17A 4XN0A 4XONA 4PMHA 3ZPPA 3GQ7A 2X6YA 2INVA 4U49A 3B8YA 4HWVA 4MXNA 4XLFA 3GRHA 4OJOA 4YELA 4Z06A 3VSTA 4OZZA 2O1DA 4XORA 1O8LA 4MR0A 3VSVA 2PYGA 5AMVA 3B4NA 1OFLA 1RMGA 2QX3A 2VBEA 3KRGA 1IB4A 1OGOX 4W8RA 2QXZA 3GQ9A 4AVZA 1PXZA 3EQNA 3GQ8A 3VMVA 1O8DA 2NT6A 2EWEA 1CZFA 1OFMA 4XL9A 4XNFA 1EE6A 1QCXA 4NK6A 3T9GA 1WMRA 1VBLA 2NSPA 2NTQA 4YZQA 1H80A 4U4BA 1JRGA 1KTWA 1KCDA 3WWGA 2NTBA 3FY3A 2PECA 4YZAA 1IDKA 2NZMA 1JTAA 1AIRA 1O8MA 2PYHA 2VBKA 1O8IA 4XR6A 3JURA 4XM3A 4XMYA 2ODLA 4OJPA 2X6WA 1O8EA 2IQ7A 4OJ5A 1BHEA 2O04A 2QY1A 3VMWA 4I84A 4XKVA 1DBOA 1NHCA 2VBMA 1X0CA 2VJIA 1OGMX 2INUA 1XG2A 2Z8GA 4URRA 1O8FA 5C1EA 4NK8A 3EQOA 1DBGA 1OOCA 1GQ8A 4XLEA 4XOPA 4Z03A 3B90A 1RWRA 4XKWA 4OZYA 4XQFA 4XOTA 3SUCA 4YEJA 1PE9A 1RU4A 1O8JA 4XLAA 5C1CA 4W8TA 3ZSCA 4OJ6A 2X85A 2UVEA 1PLUA 2X6XA 2NSTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4W8Q A;  2NT9 A;  1IDJ A;  4EW9 A;  2VJJ A;  1O88 A;  4YZX A;  1O8G A;  4OJL A;  1O8H A;  3UW0 A;  4YZ0 A;  1KCC A;  1QJV A;  2NTP A;  3GQA A;  2BSP A;  4W8S A;  2O0V A;  3VSU A;  2O0W A;  4Z05 A;  1K5C A;  1BN8 A;  2X3H A;  1IA5 A;  4C2L A;  1O8K A;  2UVF A;  4XLH A;  1HG8 A;  4XLC A;  4XN3 A;  3LMW A;  2O17 A;  4XN0 A;  4XON A;  4PMH A;  3ZPP A;  3GQ7 A;  2X6Y A;  2INV A;  4U49 A;  3B8Y A;  4HWV A;  4MXN A;  4XLF A;  3GRH A;  4OJO A;  4YEL A;  4Z06 A;  3VST A;  4OZZ A;  2O1D A;  4XOR A;  1O8L A;  4MR0 A;  3VSV A;  2PYG A;  5AMV A;  3B4N A;  1OFL A;  1RMG A;  2QX3 A;  2VBE A;  3KRG A;  1IB4 A;  1OGO X;  4W8R A;  2QXZ A;  3GQ9 A;  4AVZ A;  1PXZ A;  3EQN A;  3GQ8 A;  3VMV A;  1O8D A;  2NT6 A;  2EWE A;  1CZF A;  1OFM A;  4XL9 A;  4XNF A;  1EE6 A;  1QCX A;  4NK6 A;  3T9G A;  1WMR A;  1VBL A;  2NSP A;  2NTQ A;  4YZQ A;  1H80 A;  4U4B A;  1JRG A;  1KTW A;  1KCD A;  3WWG A;  2NTB A;  3FY3 A;  2PEC A;  4YZA A;  1IDK A;  2NZM A;  1JTA A;  1AIR A;  1O8M A;  2PYH A;  2VBK A;  1O8I A;  4XR6 A;  3JUR A;  4XM3 A;  4XMY A;  2ODL A;  4OJP A;  2X6W A;  1O8E A;  2IQ7 A;  4OJ5 A;  1BHE A;  2O04 A;  2QY1 A;  3VMW A;  4I84 A;  4XKV A;  1DBO A;  1NHC A;  2VBM A;  1X0C A;  2VJI A;  1OGM X;  2INU A;  1XG2 A;  2Z8G A;  4URR A;  1O8F A;  5C1E A;  4NK8 A;  3EQO A;  1DBG A;  1OOC A;  1GQ8 A;  4XLE A;  4XOP A;  4Z03 A;  3B90 A;  1RWR A;  4XKW A;  4OZY A;  4XQF A;  4XOT A;  3SUC A;  4YEJ A;  1PE9 A;  1RU4 A;  1O8J A;  4XLA A;  5C1C A;  4W8T A;  3ZSC A;  4OJ6 A;  2X85 A;  2UVE A;  1PLU A;  2X6X A;  2NST A; 
#chains in the Genus database with same CATH topology
 4W8Q A;  2NT9 A;  1IDJ A;  5DNS A;  3RIQ A;  4EW9 A;  1HF2 A;  2VJJ A;  1O88 A;  4YZX A;  1O8G A;  1TYV A;  4OJL A;  1O8H A;  3UW0 A;  4YZ0 A;  4YCQ A;  1KCC A;  1QJV A;  2NTP A;  3GQA A;  2BSP A;  4W8S A;  2O0V A;  3VSU A;  1QA3 A;  2O0W A;  4Z05 A;  1K5C A;  1WXR A;  3N6Z A;  1BN8 A;  2X3H A;  2XTW A;  1IA5 A;  4C2L A;  1O8K A;  5JLV C;  2UVF A;  4XLH A;  3LYC A;  1HG8 A;  4XLC A;  4XN3 A;  3SYJ A;  3LMW A;  2O17 A;  1QA2 A;  2BX6 A;  4XN0 A;  4XON A;  4PMH A;  2O6W A;  3ZPP A;  3GQ7 A;  2X6Y A;  2INV A;  1TSP A;  2VFP A;  4U49 A;  2VFM A;  2XT2 A;  1L1I A;  1LM1 A;  3B8Y A;  4HWV A;  4MXN A;  1OFD A;  2G0Y A;  3GRH A;  4OJO A;  4XLF A;  4YEL A;  4OZZ A;  4Z06 A;  2O1D A;  4KH3 A;  3VST A;  4XOR A;  1O8L A;  2XT4 A;  4MR0 A;  4YDT A;  3VSV A;  1EZG A;  2PYG A;  5AMV A;  3B4N A;  1OFL A;  1RMG A;  2J8I A;  2QX3 A;  2VBE A;  2W7Z A;  3KRG A;  1IB4 A;  2BM7 A;  1OGO X;  1K8F A;  4W8R A;  2QXZ A;  3SZE A;  3SY2 A;  3GQ9 A;  4AVZ A;  3AK5 A;  1TYX A;  1PXZ A;  3BH7 B;  2BM5 A;  2VFO A;  3EQN A;  1O8D A;  2NT6 A;  2EWE A;  2XTY A;  1CZF A;  3GQ8 A;  3VMV A;  1OFM A;  4XL9 A;  4XNF A;  1EE6 A;  3NAW A;  1QCX A;  1TYU A;  3JX8 A;  4NK6 A;  3T9G A;  3NB2 A;  4JRA C;  3PET A;  1WMR A;  1LLZ A;  1QRC A;  1VBL A;  2NSP A;  2NTQ A;  4YZQ A;  1H80 A;  4U4B A;  1JRG A;  1KTW A;  2V5I A;  1KCD A;  3WWG A;  2NTB A;  1KQ5 A;  3FY3 A;  2QYU A;  2PEC A;  4YZA A;  1IDK A;  2B0R A;  2NZM A;  1JTA A;  1AIR A;  1O8M A;  2PYH A;  2VBK A;  1QRB A;  1O8I A;  4XR6 A;  3JUR A;  3N90 A;  4XM3 A;  4XMY A;  2BM4 A;  2ODL A;  4OJP A;  2X6W A;  1O8E A;  2IQ7 A;  4OJ5 A;  1BHE A;  2O04 A;  2QY1 A;  3VMW A;  4OPW A;  4YC5 A;  1CLW A;  2J8K A;  1DBO A;  4I84 A;  4XKV A;  1NHC A;  2VBM A;  2IOU G;  1X0C A;  3PSS A;  3DU1 X;  2VJI A;  1OGM X;  3SQV A;  1DAB A;  2INU A;  1XG2 A;  3BH6 B;  4YFO A;  2Z8G A;  1LLW A;  2XTX A;  3H09 A;  3PSZ A;  1O8F A;  2VFN A;  4V02 C;  4URR A;  4OM9 A;  5C1E A;  4NK8 A;  1K4Z A;  1DBG A;  3EQO A;  1OOC A;  3P4G A;  3TH0 A;  1GQ8 A;  4XLE A;  2VFQ A;  4XOP A;  4YEI A;  4Z03 A;  3B90 A;  1RWR A;  4XKW A;  1QA1 A;  4OZY A;  1QQ1 A;  4XQF A;  4XOT A;  2QZA A;  3SUC A;  5JMC B;  4YEJ A;  1OFE A;  1PE9 A;  1RU4 A;  3LJY A;  2XC1 A;  1O8J A;  4XLA A;  5C1C A;  1PLU A;  4W8T A;  3ZSC A;  1EA0 A;  4OJ6 A;  2BM6 A;  3ML3 A;  2X85 A;  2YUH A;  2UVE A;  1TYW A;  2F3L A;  2X6X A;  2NST A; 
#chains in the Genus database with same CATH homology
 4W8Q A;  2NT9 A;  1IDJ A;  4EW9 A;  2VJJ A;  1O88 A;  4YZX A;  1O8G A;  4OJL A;  1O8H A;  3UW0 A;  4YZ0 A;  1KCC A;  1QJV A;  2NTP A;  3GQA A;  2BSP A;  4W8S A;  2O0V A;  3VSU A;  2O0W A;  4Z05 A;  1K5C A;  1BN8 A;  2X3H A;  1IA5 A;  4C2L A;  1O8K A;  2UVF A;  4XLH A;  1HG8 A;  4XLC A;  4XN3 A;  3LMW A;  2O17 A;  4XN0 A;  4XON A;  4PMH A;  3ZPP A;  3GQ7 A;  2X6Y A;  2INV A;  4U49 A;  3B8Y A;  4HWV A;  4MXN A;  4XLF A;  3GRH A;  4OJO A;  4YEL A;  4Z06 A;  3VST A;  4OZZ A;  2O1D A;  4XOR A;  1O8L A;  4MR0 A;  3VSV A;  2PYG A;  5AMV A;  3B4N A;  1OFL A;  1RMG A;  2QX3 A;  2VBE A;  3KRG A;  1IB4 A;  1OGO X;  4W8R A;  2QXZ A;  3GQ9 A;  4AVZ A;  1PXZ A;  3EQN A;  3GQ8 A;  3VMV A;  1O8D A;  2NT6 A;  2EWE A;  1CZF A;  1OFM A;  4XL9 A;  4XNF A;  1EE6 A;  1QCX A;  4NK6 A;  3T9G A;  1WMR A;  1VBL A;  2NSP A;  2NTQ A;  4YZQ A;  1H80 A;  4U4B A;  1JRG A;  1KTW A;  1KCD A;  3WWG A;  2NTB A;  3FY3 A;  2PEC A;  4YZA A;  1IDK A;  2NZM A;  1JTA A;  1AIR A;  1O8M A;  2PYH A;  2VBK A;  1O8I A;  4XR6 A;  3JUR A;  4XM3 A;  4XMY A;  2ODL A;  4OJP A;  2X6W A;  1O8E A;  2IQ7 A;  4OJ5 A;  1BHE A;  2O04 A;  2QY1 A;  3VMW A;  4I84 A;  4XKV A;  1DBO A;  1NHC A;  2VBM A;  1X0C A;  2VJI A;  1OGM X;  2INU A;  1XG2 A;  2Z8G A;  4URR A;  1O8F A;  5C1E A;  4NK8 A;  3EQO A;  1DBG A;  1OOC A;  1GQ8 A;  4XLE A;  4XOP A;  4Z03 A;  3B90 A;  1RWR A;  4XKW A;  4OZY A;  4XQF A;  4XOT A;  3SUC A;  4YEJ A;  1PE9 A;  1RU4 A;  1O8J A;  4XLA A;  5C1C A;  4W8T A;  3ZSC A;  4OJ6 A;  2X85 A;  2UVE A;  1PLU A;  2X6X A;  2NST A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...