1GQ8A

Pectin methylesterase from carrot
Total Genus 122

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
122
sequence length
319
structure length
319
Chain Sequence
ESSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL
5010015020025030030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TIV1 (3-6)S1 (9-11)TI1 (12-15)S3 (44-47)S2 (37-41)EMPTYAH1 (22-28)TI2 (53-56)TIV2 (30-33)TVIII1 (54-57)S5 (59-63)S7 (89-91)S4 (50-52)TII1 (93-96)TIV3 (56-59)TI3 (65-68)S10 (124-132)S12 (144-148)TIV4 (76-79)3H1 (83-85)S9 (117-119)S8 (97-105)TVIII2 (87-90)TIV5 (121-124)S11 (138-140)S16 (171-174)S13 (151-154)TII2 (134-137)TIV8 (155-158)TIV9 (167-170)TIV7 (147-150)S17 (183-188)S14 (156-161)S20 (221-224)TI6 (192-195)S15 (164-168)TIV10 (201-204)TI7 (209-212)TII3 (178-181)TVIII5 (226-229)TI11 (228-231)S18 (198-202)S19 (205-208)S22 (239-240)TIV11 (211-214)3H3 (216-218)TI9 (212-215)TIV12 (241-244)TI12 (245-248)TI13 (257-260)TI14 (258-261)S23 (262-266)S21 (232-236)TI15 (270-273)TII'1 (253-256)TIV13 (251-254)TII4 (255-258)TI18 (281-284)AH2 (290-295)TI17 (275-278)TI16 (271-274)S24 (284-286)3H4 (304-306)S6 (69-73)TI5 (77-80)3H2 (109-111)AH3 (298-302)3H5 (308-311)Updating...
connected with : NaN
molecule tags Hydrolase
publication title Crystal Structure of Plant Pectin Methylesterase
pubmed doi rcsb
molecule keywords PECTINESTERASE
total genus 122
structure length 319
sequence length 319
ec nomenclature ec 3.1.1.11: Pectinesterase.
pdb deposition date 2001-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01095 Pectinesterase Pectinesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1gq8A00
1GQ8A 3B90A 4W8TA 1BN8A 4XKWA 1EE6A 1VBLA 4URRA 1O8JA 2NT6A 2QX3A 4XOPA 4EW9A 2INUA 1O8LA 1JRGA 4OJPA 4XLEA 4XNFA 4U49A 5C1CA 4OJ6A 2NT9A 1AIRA 1X0CA 4XLAA 2VBMA 3WWGA 4XOTA 4YZQA 4YZAA 3VSUA 1OGOX 4YEJA 4Z03A 2NSTA 4W8RA 4MR0A 2X6XA 3LMWA 1KTWA 3VSVA 4Z05A 3FY3A 1O88A 1NHCA 2NTBA 1OFMA 2QXZA 4NK8A 3UW0A 4W8QA 2VJIA 4U4BA 2O0WA 2IQ7A 3GQAA 2Z8GA 3VSTA 4XORA 1PE9A 2O04A 1O8IA 3GQ7A 2INVA 4XLCA 5AMVA 3GQ9A 2PYHA 4I84A 2ODLA 2PECA 1OFLA 1KCCA 2UVFA 1CZFA 1KCDA 1O8FA 3B8YA 2NTPA 4XM3A 1IDJA 2QY1A 4XN0A 3EQOA 3B4NA 5C1EA 2O1DA 1O8EA 2X3HA 2VBEA 4Z06A 4XLFA 4OJLA 1H80A 1HG8A 1O8GA 1PXZA 2BSPA 3GRHA 2VJJA 4HWVA 4OZZA 3GQ8A 1RWRA 4XN3A 2VBKA 1IDKA 2EWEA 2PYGA 2O17A 3ZSCA 4OJOA 2NTQA 4MXNA 4YELA 2X6WA 1DBOA 3KRGA 4C2LA 1OOCA 4YZXA 4XLHA 1O8DA 1OGMX 4XR6A 3ZPPA 3T9GA 2UVEA 2X85A 1O8HA 1QJVA 4W8SA 1K5CA 4XKVA 3SUCA 3JURA 4OJ5A 4PMHA 4XL9A 1DBGA 2O0VA 2NSPA 2NZMA 1IB4A 1O8KA 1O8MA 4XONA 1RU4A 2X6YA 1PLUA 4NK6A 4XQFA 1XG2A 3VMVA 4OZYA 3VMWA 1BHEA 1QCXA 4XMYA 1JTAA 1RMGA 4YZ0A 4AVZA 3EQNA 1IA5A 1WMRA
chains in the Genus database with same CATH superfamily
1GQ8A 3NB2A 3B90A 4W8TA 1BN8A 4V02C 4XKWA 1EE6A 1VBLA 2W7ZA 3SQVA 4URRA 1O8JA 2NT6A 2QX3A 4XOPA 4EW9A 3PSSA 2INUA 2G0YA 1O8LA 1JRGA 4OJPA 4XLEA 4XNFA 4U49A 2VFNA 1L1IA 5C1CA 2F3LA 4OJ6A 2NT9A 1AIRA 1X0CA 2B0RA 2XT2A 2VBMA 4XLAA 2V5IA 3WWGA 2QYUA 4XOTA 4YZQA 4YZAA 3VSUA 2XT4A 1QA1A 5JLVC 4JRAC 1OGOX 4YEJA 4Z03A 2NSTA 4W8RA 4MR0A 2X6XA 3LMWA 1KTWA 3SZEA 3VSVA 4Z05A 1K8FA 2BM4A 3FY3A 5JMCB 1O88A 1NHCA 2NTBA 3PETA 1WXRA 1OFMA 2QXZA 4NK8A 3UW0A 4W8QA 2VJIA 4U4BA 2O0WA 2IQ7A 1TSPA 3GQAA 2Z8GA 3SY2A 1TYUA 3VSTA 2VFOA 4XORA 1PE9A 3NAWA 2O04A 1O8IA 3GQ7A 2INVA 4XLCA 5AMVA 3BH7B 3GQ9A 2PYHA 4I84A 2ODLA 2PECA 1OFLA 1KCCA 2J8IA 4YCQA 4YC5A 4YFOA 2UVFA 3JX8A 1CZFA 1EZGA 1KCDA 1O8FA 3B8YA 3N90A 2NTPA 4XM3A 1IDJA 1K4ZA 4YDTA 3RIQA 2QY1A 4XN0A 3TH0A 3EQOA 1QA2A 2VFQA 3B4NA 5C1EA 2O1DA 1O8EA 1QRBA 2X3HA 2VBEA 2BX6A 4OPWA 3DU1X 4Z06A 3BH6B 4XLFA 4OJLA 1H80A 1HG8A 1O8GA 1PXZA 2BSPA 3GRHA 2O6WA 2VJJA 4HWVA 3P4GA 4OZZA 1OFDA 2VFPA 2XTXA 1EA0A 3GQ8A 1RWRA 2XTWA 4XN3A 2VBKA 1IDKA 2EWEA 2PYGA 2O17A 2BM7A 4KH3A 2NTQA 4OJOA 3ZSCA 4MXNA 4YELA 2X6WA 2XC1A 1DBOA 3KRGA 4C2LA 1OOCA 4YZXA 4XLHA 1O8DA 1DABA 1KQ5A 1OGMX 3H09A 4XR6A 3SYJA 3ZPPA 3T9GA 2UVEA 2X85A 1O8HA 1LLZA 1QA3A 1QJVA 3AK5A 4W8SA 1TYXA 4XKVA 1K5CA 3SUCA 3JURA 3LYCA 4OJ5A 4PMHA 4XL9A 2QZAA 2BM5A 1DBGA 1TYWA 2O0VA 2NSPA 2NZMA 1IB4A 2BM6A 3LJYA 1O8KA 1O8MA 2YUHA 1LLWA 2J8KA 4OM9A 3N6ZA 4XONA 1RU4A 2X6YA 2XTYA 1QQ1A 1HF2A 1PLUA 3ML3A 4NK6A 4XQFA 2VFMA 1XG2A 3VMVA 4OZYA 3VMWA 1BHEA 1TYVA 1QCXA 1QRCA 5DNSA 1CLWA 1JTAA 1RMGA 4XMYA 1OFEA 3EQNA 4AVZA 4YEIA 3PSZA 4YZ0A 1IA5A 2IOUG 1WMRA 1LM1A
chains in the Genus database with same CATH topology
1GQ8A 3B90A 4W8TA 1BN8A 4XKWA 1EE6A 1VBLA 4URRA 1O8JA 2NT6A 2QX3A 4XOPA 4EW9A 2INUA 1O8LA 1JRGA 4OJPA 4XLEA 4XNFA 4U49A 5C1CA 4OJ6A 2NT9A 1AIRA 1X0CA 4XLAA 2VBMA 3WWGA 4XOTA 4YZQA 4YZAA 3VSUA 1OGOX 4YEJA 4Z03A 2NSTA 4W8RA 4MR0A 2X6XA 3LMWA 1KTWA 3VSVA 4Z05A 3FY3A 1O88A 1NHCA 2NTBA 1OFMA 2QXZA 4NK8A 3UW0A 4W8QA 2VJIA 4U4BA 2O0WA 2IQ7A 3GQAA 2Z8GA 3VSTA 4XORA 1PE9A 2O04A 1O8IA 3GQ7A 2INVA 4XLCA 5AMVA 3GQ9A 2PYHA 4I84A 2ODLA 2PECA 1OFLA 1KCCA 2UVFA 1CZFA 1KCDA 1O8FA 3B8YA 2NTPA 4XM3A 1IDJA 2QY1A 4XN0A 3EQOA 3B4NA 5C1EA 2O1DA 1O8EA 2X3HA 2VBEA 4Z06A 4XLFA 4OJLA 1H80A 1HG8A 1O8GA 1PXZA 2BSPA 3GRHA 2VJJA 4HWVA 4OZZA 3GQ8A 1RWRA 4XN3A 2VBKA 1IDKA 2EWEA 2PYGA 2O17A 3ZSCA 4OJOA 2NTQA 4MXNA 4YELA 2X6WA 1DBOA 3KRGA 4C2LA 1OOCA 4YZXA 4XLHA 1O8DA 1OGMX 4XR6A 3ZPPA 3T9GA 2UVEA 2X85A 1O8HA 1QJVA 4W8SA 1K5CA 4XKVA 3SUCA 3JURA 4OJ5A 4PMHA 4XL9A 1DBGA 2O0VA 2NSPA 2NZMA 1IB4A 1O8KA 1O8MA 4XONA 1RU4A 2X6YA 1PLUA 4NK6A 4XQFA 1XG2A 3VMVA 4OZYA 3VMWA 1BHEA 1QCXA 4XMYA 1JTAA 1RMGA 4YZ0A 4AVZA 3EQNA 1IA5A 1WMRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GQ8 A;  3B90 A;  4W8T A;  1BN8 A;  4XKW A;  1EE6 A;  1VBL A;  4URR A;  1O8J A;  2NT6 A;  2QX3 A;  4XOP A;  4EW9 A;  2INU A;  1O8L A;  1JRG A;  4OJP A;  4XLE A;  4XNF A;  4U49 A;  5C1C A;  4OJ6 A;  2NT9 A;  1AIR A;  1X0C A;  4XLA A;  2VBM A;  3WWG A;  4XOT A;  4YZQ A;  4YZA A;  3VSU A;  1OGO X;  4YEJ A;  4Z03 A;  2NST A;  4W8R A;  4MR0 A;  2X6X A;  3LMW A;  1KTW A;  3VSV A;  4Z05 A;  3FY3 A;  1O88 A;  1NHC A;  2NTB A;  1OFM A;  2QXZ A;  4NK8 A;  3UW0 A;  4W8Q A;  2VJI A;  4U4B A;  2O0W A;  2IQ7 A;  3GQA A;  2Z8G A;  3VST A;  4XOR A;  1PE9 A;  2O04 A;  1O8I A;  3GQ7 A;  2INV A;  4XLC A;  5AMV A;  3GQ9 A;  2PYH A;  4I84 A;  2ODL A;  2PEC A;  1OFL A;  1KCC A;  2UVF A;  1CZF A;  1KCD A;  1O8F A;  3B8Y A;  2NTP A;  4XM3 A;  1IDJ A;  2QY1 A;  4XN0 A;  3EQO A;  3B4N A;  5C1E A;  2O1D A;  1O8E A;  2X3H A;  2VBE A;  4Z06 A;  4XLF A;  4OJL A;  1H80 A;  1HG8 A;  1O8G A;  1PXZ A;  2BSP A;  3GRH A;  2VJJ A;  4HWV A;  4OZZ A;  3GQ8 A;  1RWR A;  4XN3 A;  2VBK A;  1IDK A;  2EWE A;  2PYG A;  2O17 A;  3ZSC A;  4OJO A;  2NTQ A;  4MXN A;  4YEL A;  2X6W A;  1DBO A;  3KRG A;  4C2L A;  1OOC A;  4YZX A;  4XLH A;  1O8D A;  1OGM X;  4XR6 A;  3ZPP A;  3T9G A;  2UVE A;  2X85 A;  1O8H A;  1QJV A;  4W8S A;  1K5C A;  4XKV A;  3SUC A;  3JUR A;  4OJ5 A;  4PMH A;  4XL9 A;  1DBG A;  2O0V A;  2NSP A;  2NZM A;  1IB4 A;  1O8K A;  1O8M A;  4XON A;  1RU4 A;  2X6Y A;  1PLU A;  4NK6 A;  4XQF A;  1XG2 A;  3VMV A;  4OZY A;  3VMW A;  1BHE A;  1QCX A;  4XMY A;  1JTA A;  1RMG A;  4YZ0 A;  4AVZ A;  3EQN A;  1IA5 A;  1WMR A; 
#chains in the Genus database with same CATH topology
 1GQ8 A;  3NB2 A;  3B90 A;  4W8T A;  1BN8 A;  4V02 C;  4XKW A;  1EE6 A;  1VBL A;  2W7Z A;  3SQV A;  4URR A;  1O8J A;  2NT6 A;  2QX3 A;  4XOP A;  4EW9 A;  3PSS A;  2INU A;  2G0Y A;  1O8L A;  1JRG A;  4OJP A;  4XLE A;  4XNF A;  4U49 A;  2VFN A;  1L1I A;  5C1C A;  2F3L A;  4OJ6 A;  2NT9 A;  1AIR A;  1X0C A;  2B0R A;  2XT2 A;  2VBM A;  4XLA A;  2V5I A;  3WWG A;  2QYU A;  4XOT A;  4YZQ A;  4YZA A;  3VSU A;  2XT4 A;  1QA1 A;  5JLV C;  4JRA C;  1OGO X;  4YEJ A;  4Z03 A;  2NST A;  4W8R A;  4MR0 A;  2X6X A;  3LMW A;  1KTW A;  3SZE A;  3VSV A;  4Z05 A;  1K8F A;  2BM4 A;  3FY3 A;  5JMC B;  1O88 A;  1NHC A;  2NTB A;  3PET A;  1WXR A;  1OFM A;  2QXZ A;  4NK8 A;  3UW0 A;  4W8Q A;  2VJI A;  4U4B A;  2O0W A;  2IQ7 A;  1TSP A;  3GQA A;  2Z8G A;  3SY2 A;  1TYU A;  3VST A;  2VFO A;  4XOR A;  1PE9 A;  3NAW A;  2O04 A;  1O8I A;  3GQ7 A;  2INV A;  4XLC A;  5AMV A;  3BH7 B;  3GQ9 A;  2PYH A;  4I84 A;  2ODL A;  2PEC A;  1OFL A;  1KCC A;  2J8I A;  4YCQ A;  4YC5 A;  4YFO A;  2UVF A;  3JX8 A;  1CZF A;  1EZG A;  1KCD A;  1O8F A;  3B8Y A;  3N90 A;  2NTP A;  4XM3 A;  1IDJ A;  1K4Z A;  4YDT A;  3RIQ A;  2QY1 A;  4XN0 A;  3TH0 A;  3EQO A;  1QA2 A;  2VFQ A;  3B4N A;  5C1E A;  2O1D A;  1O8E A;  1QRB A;  2X3H A;  2VBE A;  2BX6 A;  4OPW A;  3DU1 X;  4Z06 A;  3BH6 B;  4XLF A;  4OJL A;  1H80 A;  1HG8 A;  1O8G A;  1PXZ A;  2BSP A;  3GRH A;  2O6W A;  2VJJ A;  4HWV A;  3P4G A;  4OZZ A;  1OFD A;  2VFP A;  2XTX A;  1EA0 A;  3GQ8 A;  1RWR A;  2XTW A;  4XN3 A;  2VBK A;  1IDK A;  2EWE A;  2PYG A;  2O17 A;  2BM7 A;  4KH3 A;  2NTQ A;  4OJO A;  3ZSC A;  4MXN A;  4YEL A;  2X6W A;  2XC1 A;  1DBO A;  3KRG A;  4C2L A;  1OOC A;  4YZX A;  4XLH A;  1O8D A;  1DAB A;  1KQ5 A;  1OGM X;  3H09 A;  4XR6 A;  3SYJ A;  3ZPP A;  3T9G A;  2UVE A;  2X85 A;  1O8H A;  1LLZ A;  1QA3 A;  1QJV A;  3AK5 A;  4W8S A;  1TYX A;  4XKV A;  1K5C A;  3SUC A;  3JUR A;  3LYC A;  4OJ5 A;  4PMH A;  4XL9 A;  2QZA A;  2BM5 A;  1DBG A;  1TYW A;  2O0V A;  2NSP A;  2NZM A;  1IB4 A;  2BM6 A;  3LJY A;  1O8K A;  1O8M A;  2YUH A;  1LLW A;  2J8K A;  4OM9 A;  3N6Z A;  4XON A;  1RU4 A;  2X6Y A;  2XTY A;  1QQ1 A;  1HF2 A;  1PLU A;  3ML3 A;  4NK6 A;  4XQF A;  2VFM A;  1XG2 A;  3VMV A;  4OZY A;  3VMW A;  1BHE A;  1TYV A;  1QCX A;  1QRC A;  5DNS A;  1CLW A;  1JTA A;  1RMG A;  4XMY A;  1OFE A;  3EQN A;  4AVZ A;  4YEI A;  3PSZ A;  4YZ0 A;  1IA5 A;  2IOU G;  1WMR A;  1LM1 A; 
#chains in the Genus database with same CATH homology
 1GQ8 A;  3B90 A;  4W8T A;  1BN8 A;  4XKW A;  1EE6 A;  1VBL A;  4URR A;  1O8J A;  2NT6 A;  2QX3 A;  4XOP A;  4EW9 A;  2INU A;  1O8L A;  1JRG A;  4OJP A;  4XLE A;  4XNF A;  4U49 A;  5C1C A;  4OJ6 A;  2NT9 A;  1AIR A;  1X0C A;  4XLA A;  2VBM A;  3WWG A;  4XOT A;  4YZQ A;  4YZA A;  3VSU A;  1OGO X;  4YEJ A;  4Z03 A;  2NST A;  4W8R A;  4MR0 A;  2X6X A;  3LMW A;  1KTW A;  3VSV A;  4Z05 A;  3FY3 A;  1O88 A;  1NHC A;  2NTB A;  1OFM A;  2QXZ A;  4NK8 A;  3UW0 A;  4W8Q A;  2VJI A;  4U4B A;  2O0W A;  2IQ7 A;  3GQA A;  2Z8G A;  3VST A;  4XOR A;  1PE9 A;  2O04 A;  1O8I A;  3GQ7 A;  2INV A;  4XLC A;  5AMV A;  3GQ9 A;  2PYH A;  4I84 A;  2ODL A;  2PEC A;  1OFL A;  1KCC A;  2UVF A;  1CZF A;  1KCD A;  1O8F A;  3B8Y A;  2NTP A;  4XM3 A;  1IDJ A;  2QY1 A;  4XN0 A;  3EQO A;  3B4N A;  5C1E A;  2O1D A;  1O8E A;  2X3H A;  2VBE A;  4Z06 A;  4XLF A;  4OJL A;  1H80 A;  1HG8 A;  1O8G A;  1PXZ A;  2BSP A;  3GRH A;  2VJJ A;  4HWV A;  4OZZ A;  3GQ8 A;  1RWR A;  4XN3 A;  2VBK A;  1IDK A;  2EWE A;  2PYG A;  2O17 A;  3ZSC A;  4OJO A;  2NTQ A;  4MXN A;  4YEL A;  2X6W A;  1DBO A;  3KRG A;  4C2L A;  1OOC A;  4YZX A;  4XLH A;  1O8D A;  1OGM X;  4XR6 A;  3ZPP A;  3T9G A;  2UVE A;  2X85 A;  1O8H A;  1QJV A;  4W8S A;  1K5C A;  4XKV A;  3SUC A;  3JUR A;  4OJ5 A;  4PMH A;  4XL9 A;  1DBG A;  2O0V A;  2NSP A;  2NZM A;  1IB4 A;  1O8K A;  1O8M A;  4XON A;  1RU4 A;  2X6Y A;  1PLU A;  4NK6 A;  4XQF A;  1XG2 A;  3VMV A;  4OZY A;  3VMW A;  1BHE A;  1QCX A;  4XMY A;  1JTA A;  1RMG A;  4YZ0 A;  4AVZ A;  3EQN A;  1IA5 A;  1WMR A; 
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