1IA5A

Polygalacturonase from aspergillus aculeatus
Total Genus 126

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
126
sequence length
339
structure length
339
Chain Sequence
ATTCTFSGSNGASSASKSKTSCSTIVLSNVAVPSGTTLDLTKLNDGTHVIFSGETTFGYKEWSGPLISVSGSDLTITGASGHSINGDGSRWWDGEGGNGGKTKPKFFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSGENIYFSGGYCSGGHGLSIGSVGGRSDNTVKNVTFVDSTIINSDNGVRIKTNIDTTGSVSDVTYKDITLTSIAKYGIVVQQNYGDTSSTPTTGVPITDFVLDNVHGSVVSSGTNILISCGSGSCSDWTWTDVSVSGGKTSSKCTNVPSGASC
5010015020025030030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (19-21)EMPTYTVIII1 (22-25)AH1 (10-18)S1 (3-8)TII2 (44-47)S4 (48-52)S2 (24-32)TII1 (33-36)S3 (38-41)TVIII2 (65-68)S6 (67-72)S7 (75-78)TII3 (79-82)3H2 (88-90)S5 (54-57)S10 (121-123)TIV10 (151-154)TII'2 (95-98)TIV11 (155-158)S9 (107-118)S11 (130-141)TIV6 (125-128)TVIII3 (159-162)S13 (161-172)TIV9 (140-143)S14 (175-177)3H3 (148-150)S12 (144-146)TI2 (150-153)TVIII4 (181-184)TIV14 (185-188)S16 (188-194)TIV13 (171-174)S17 (197-199)S18 (204-209)TVIII5 (212-215)TVIII6 (230-233)S22 (246-259)S20 (226-228)TIV15 (227-230)TIV19 (259-262)S21 (234-238)TIV20 (267-270)TII4 (239-242)TVIII8 (279-282)TI4 (296-299)S25 (300-305)TII5 (269-272)TI3 (272-275)S24 (283-295)TII6 (307-310)TIV24 (327-330)TIV25 (330-333)TI5 (334-337)TIV2 (40-43)S8 (83-85)TIV3 (71-74)S15 (183-185)S23 (262-267)S19 (217-223)S26 (311-322)Updating...
connected with : NaN
molecule tags Hydrolase
publication title The X-ray structure of Aspergillus aculeatus polygalacturonase and a modeled structure of the polygalacturonase-octagalacturonate complex.
pubmed doi rcsb
molecule keywords POLYGALACTURONASE
total genus 126
structure length 339
sequence length 339
ec nomenclature ec 3.2.1.15: Endo-polygalacturonase.
pdb deposition date 2001-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00295 Glyco_hydro_28 Glycosyl hydrolases family 28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1ia5A00
1JRGA 1JTAA 3EQOA 2O0VA 4XOTA 1IDKA 5C1CA 2PECA 1H80A 4W8QA 1O8EA 4XN0A 2QY1A 1NHCA 2O17A 2NTPA 3VMWA 1WMRA 3VMVA 3B8YA 4C2LA 1O8HA 4NK8A 3VSUA 3EQNA 1K5CA 2VBEA 1EE6A 4XONA 2O0WA 3GQ9A 1QJVA 3FY3A 1O8IA 3B4NA 4I84A 1IDJA 3GQ8A 4Z06A 2PYGA 3T9GA 1VBLA 2PYHA 4YZQA 1PXZA 2IQ7A 2INUA 2VBMA 4OJPA 1KCCA 2X6WA 1HG8A 1OOCA 3UW0A 1BHEA 1KTWA 1RU4A 4HWVA 4YZAA 4XKWA 1AIRA 2VJIA 2X6YA 2NTQA 4W8SA 1DBOA 4XR6A 4XQFA 4AVZA 5AMVA 4XOPA 4MXNA 4MR0A 4URRA 1OGOX 2EWEA 2QXZA 1O8LA 1XG2A 1IA5A 2O1DA 4XLFA 2NTBA 4YEJA 1O8KA 1KCDA 4OZZA 2NSPA 1O8FA 3B90A 2X6XA 3SUCA 4XL9A 4W8RA 3KRGA 4XORA 3GQ7A 4YZ0A 4OJ5A 4W8TA 4YZXA 2NSTA 4XLHA 4OZYA 4XN3A 1O8JA 4XLAA 1DBGA 4XKVA 4Z05A 2Z8GA 1O88A 3JURA 1O8GA 3WWGA 2ODLA 3ZSCA 4PMHA 1IB4A 1PE9A 1QCXA 3LMWA 1BN8A 1OFLA 2NT6A 2VJJA 5C1EA 2UVEA 4XLEA 4XLCA 2QX3A 1OFMA 4OJLA 4OJOA 3VSVA 4Z03A 2X3HA 1CZFA 3VSTA 2O04A 2NT9A 4OJ6A 1X0CA 4XNFA 1RWRA 1OGMX 2BSPA 4U4BA 3ZPPA 1O8MA 2INVA 2NZMA 1GQ8A 1PLUA 4EW9A 4YELA 4XM3A 3GRHA 4NK6A 4U49A 1O8DA 4XMYA 2UVFA 2VBKA 2X85A 3GQAA 1RMGA
chains in the Genus database with same CATH superfamily
1JRGA 1QRBA 1JTAA 3EQOA 2O0VA 4XOTA 1IDKA 5C1CA 2PECA 2F3LA 1H80A 4W8QA 3PSSA 3NB2A 4YEIA 1O8EA 4XN0A 2QY1A 3PETA 1NHCA 2V5IA 2O17A 2NTPA 3VMWA 1L1IA 3AK5A 1WMRA 3VMVA 3B8YA 4C2LA 1O8HA 1TYXA 4NK8A 3VSUA 3EQNA 3BH7B 1K5CA 3BH6B 2VBEA 5JMCB 1EE6A 4XONA 3LJYA 2O0WA 1TYVA 3GQ9A 1QJVA 4YCQA 3FY3A 1O8IA 1HF2A 2IOUG 3DU1X 3PSZA 3B4NA 4I84A 2VFPA 1OFDA 4YDTA 1IDJA 3GQ8A 4Z06A 2PYGA 3T9GA 1VBLA 4YFOA 2PYHA 4YZQA 1PXZA 3N90A 2IQ7A 2INUA 2VBMA 4OJPA 1KCCA 3SYJA 1QA1A 1QRCA 4OM9A 4OPWA 2X6WA 1HG8A 1K4ZA 1OOCA 2XC1A 3UW0A 1KQ5A 1BHEA 2XT2A 1KTWA 3H09A 1RU4A 4HWVA 2BX6A 4YZAA 4XKWA 1QA3A 1AIRA 2BM4A 2VJIA 1QA2A 2X6YA 2NTQA 4W8SA 1DBOA 4XR6A 4XQFA 4YC5A 4AVZA 5AMVA 2BM6A 4XOPA 1DABA 4MXNA 4MR0A 4URRA 1OGOX 2EWEA 2QXZA 1O8LA 5DNSA 1XG2A 1IA5A 2O1DA 4XLFA 2NTBA 1TYUA 4YEJA 1O8KA 2XTYA 4OZZA 2NSPA 1O8FA 1KCDA 1EA0A 3B90A 2X6XA 3SUCA 4XL9A 4W8RA 3KRGA 4XORA 3GQ7A 4YZ0A 2XT4A 2BM5A 4OJ5A 4W8TA 4YZXA 2NSTA 4XLHA 1K8FA 4OZYA 4XN3A 1O8JA 2VFMA 4XLAA 3SZEA 1DBGA 4XKVA 1QQ1A 3ML3A 4Z05A 2Z8GA 1O88A 2BM7A 1O8GA 1OFEA 2B0RA 2ODLA 3JURA 3WWGA 3ZSCA 4PMHA 1IB4A 3NAWA 1PE9A 1LLWA 3N6ZA 1QCXA 3LMWA 1BN8A 1OFLA 2NT6A 2VJJA 2J8IA 5C1EA 2UVEA 4XLEA 2VFOA 3JX8A 2YUHA 4XLCA 5JLVC 2QX3A 1OFMA 4OJLA 4OJOA 3VSVA 4Z03A 1EZGA 4V02C 2X3HA 3SY2A 2XTWA 1CZFA 3TH0A 3VSTA 2O04A 2NT9A 3P4GA 1X0CA 4KH3A 4OJ6A 4XNFA 2QZAA 1RWRA 1OGMX 2BSPA 4U4BA 1TYWA 2G0YA 3SQVA 2XTXA 1TSPA 2QYUA 3ZPPA 1O8MA 2O6WA 2INVA 2NZMA 3RIQA 1GQ8A 1PLUA 4EW9A 4YELA 4XM3A 4JRAC 1CLWA 1WXRA 3GRHA 4NK6A 4U49A 2VFNA 2VFQA 1LM1A 1LLZA 2W7ZA 2J8KA 1O8DA 4XMYA 2UVFA 2VBKA 2X85A 3LYCA 3GQAA 1RMGA
chains in the Genus database with same CATH topology
1JRGA 1JTAA 3EQOA 2O0VA 4XOTA 1IDKA 5C1CA 2PECA 1H80A 4W8QA 1O8EA 4XN0A 2QY1A 1NHCA 2O17A 2NTPA 3VMWA 1WMRA 3VMVA 3B8YA 4C2LA 1O8HA 4NK8A 3VSUA 3EQNA 1K5CA 2VBEA 1EE6A 4XONA 2O0WA 3GQ9A 1QJVA 3FY3A 1O8IA 3B4NA 4I84A 1IDJA 3GQ8A 4Z06A 2PYGA 3T9GA 1VBLA 2PYHA 4YZQA 1PXZA 2IQ7A 2INUA 2VBMA 4OJPA 1KCCA 2X6WA 1HG8A 1OOCA 3UW0A 1BHEA 1KTWA 1RU4A 4HWVA 4YZAA 4XKWA 1AIRA 2VJIA 2X6YA 2NTQA 4W8SA 1DBOA 4XR6A 4XQFA 4AVZA 5AMVA 4XOPA 4MXNA 4MR0A 4URRA 1OGOX 2EWEA 2QXZA 1O8LA 1XG2A 1IA5A 2O1DA 4XLFA 2NTBA 4YEJA 1O8KA 1KCDA 4OZZA 2NSPA 1O8FA 3B90A 2X6XA 3SUCA 4XL9A 4W8RA 3KRGA 4XORA 3GQ7A 4YZ0A 4OJ5A 4W8TA 4YZXA 2NSTA 4XLHA 4OZYA 4XN3A 1O8JA 4XLAA 1DBGA 4XKVA 4Z05A 2Z8GA 1O88A 3JURA 1O8GA 3WWGA 2ODLA 3ZSCA 4PMHA 1IB4A 1PE9A 1QCXA 3LMWA 1BN8A 1OFLA 2NT6A 2VJJA 5C1EA 2UVEA 4XLEA 4XLCA 2QX3A 1OFMA 4OJLA 4OJOA 3VSVA 4Z03A 2X3HA 1CZFA 3VSTA 2O04A 2NT9A 4OJ6A 1X0CA 4XNFA 1RWRA 1OGMX 2BSPA 4U4BA 3ZPPA 1O8MA 2INVA 2NZMA 1GQ8A 1PLUA 4EW9A 4YELA 4XM3A 3GRHA 4NK6A 4U49A 1O8DA 4XMYA 2UVFA 2VBKA 2X85A 3GQAA 1RMGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JRG A;  1JTA A;  3EQO A;  2O0V A;  4XOT A;  1IDK A;  5C1C A;  2PEC A;  1H80 A;  4W8Q A;  1O8E A;  4XN0 A;  2QY1 A;  1NHC A;  2O17 A;  2NTP A;  3VMW A;  1WMR A;  3VMV A;  3B8Y A;  4C2L A;  1O8H A;  4NK8 A;  3VSU A;  3EQN A;  1K5C A;  2VBE A;  1EE6 A;  4XON A;  2O0W A;  3GQ9 A;  1QJV A;  3FY3 A;  1O8I A;  3B4N A;  4I84 A;  1IDJ A;  3GQ8 A;  4Z06 A;  2PYG A;  3T9G A;  1VBL A;  2PYH A;  4YZQ A;  1PXZ A;  2IQ7 A;  2INU A;  2VBM A;  4OJP A;  1KCC A;  2X6W A;  1HG8 A;  1OOC A;  3UW0 A;  1BHE A;  1KTW A;  1RU4 A;  4HWV A;  4YZA A;  4XKW A;  1AIR A;  2VJI A;  2X6Y A;  2NTQ A;  4W8S A;  1DBO A;  4XR6 A;  4XQF A;  4AVZ A;  5AMV A;  4XOP A;  4MXN A;  4MR0 A;  4URR A;  1OGO X;  2EWE A;  2QXZ A;  1O8L A;  1XG2 A;  1IA5 A;  2O1D A;  4XLF A;  2NTB A;  4YEJ A;  1O8K A;  1KCD A;  4OZZ A;  2NSP A;  1O8F A;  3B90 A;  2X6X A;  3SUC A;  4XL9 A;  4W8R A;  3KRG A;  4XOR A;  3GQ7 A;  4YZ0 A;  4OJ5 A;  4W8T A;  4YZX A;  2NST A;  4XLH A;  4OZY A;  4XN3 A;  1O8J A;  4XLA A;  1DBG A;  4XKV A;  4Z05 A;  2Z8G A;  1O88 A;  3JUR A;  1O8G A;  3WWG A;  2ODL A;  3ZSC A;  4PMH A;  1IB4 A;  1PE9 A;  1QCX A;  3LMW A;  1BN8 A;  1OFL A;  2NT6 A;  2VJJ A;  5C1E A;  2UVE A;  4XLE A;  4XLC A;  2QX3 A;  1OFM A;  4OJL A;  4OJO A;  3VSV A;  4Z03 A;  2X3H A;  1CZF A;  3VST A;  2O04 A;  2NT9 A;  4OJ6 A;  1X0C A;  4XNF A;  1RWR A;  1OGM X;  2BSP A;  4U4B A;  3ZPP A;  1O8M A;  2INV A;  2NZM A;  1GQ8 A;  1PLU A;  4EW9 A;  4YEL A;  4XM3 A;  3GRH A;  4NK6 A;  4U49 A;  1O8D A;  4XMY A;  2UVF A;  2VBK A;  2X85 A;  3GQA A;  1RMG A; 
#chains in the Genus database with same CATH topology
 1JRG A;  1QRB A;  1JTA A;  3EQO A;  2O0V A;  4XOT A;  1IDK A;  5C1C A;  2PEC A;  2F3L A;  1H80 A;  4W8Q A;  3PSS A;  3NB2 A;  4YEI A;  1O8E A;  4XN0 A;  2QY1 A;  3PET A;  1NHC A;  2V5I A;  2O17 A;  2NTP A;  3VMW A;  1L1I A;  3AK5 A;  1WMR A;  3VMV A;  3B8Y A;  4C2L A;  1O8H A;  1TYX A;  4NK8 A;  3VSU A;  3EQN A;  3BH7 B;  1K5C A;  3BH6 B;  2VBE A;  5JMC B;  1EE6 A;  4XON A;  3LJY A;  2O0W A;  1TYV A;  3GQ9 A;  1QJV A;  4YCQ A;  3FY3 A;  1O8I A;  1HF2 A;  2IOU G;  3DU1 X;  3PSZ A;  3B4N A;  4I84 A;  2VFP A;  1OFD A;  4YDT A;  1IDJ A;  3GQ8 A;  4Z06 A;  2PYG A;  3T9G A;  1VBL A;  4YFO A;  2PYH A;  4YZQ A;  1PXZ A;  3N90 A;  2IQ7 A;  2INU A;  2VBM A;  4OJP A;  1KCC A;  3SYJ A;  1QA1 A;  1QRC A;  4OM9 A;  4OPW A;  2X6W A;  1HG8 A;  1K4Z A;  1OOC A;  2XC1 A;  3UW0 A;  1KQ5 A;  1BHE A;  2XT2 A;  1KTW A;  3H09 A;  1RU4 A;  4HWV A;  2BX6 A;  4YZA A;  4XKW A;  1QA3 A;  1AIR A;  2BM4 A;  2VJI A;  1QA2 A;  2X6Y A;  2NTQ A;  4W8S A;  1DBO A;  4XR6 A;  4XQF A;  4YC5 A;  4AVZ A;  5AMV A;  2BM6 A;  4XOP A;  1DAB A;  4MXN A;  4MR0 A;  4URR A;  1OGO X;  2EWE A;  2QXZ A;  1O8L A;  5DNS A;  1XG2 A;  1IA5 A;  2O1D A;  4XLF A;  2NTB A;  1TYU A;  4YEJ A;  1O8K A;  2XTY A;  4OZZ A;  2NSP A;  1O8F A;  1KCD A;  1EA0 A;  3B90 A;  2X6X A;  3SUC A;  4XL9 A;  4W8R A;  3KRG A;  4XOR A;  3GQ7 A;  4YZ0 A;  2XT4 A;  2BM5 A;  4OJ5 A;  4W8T A;  4YZX A;  2NST A;  4XLH A;  1K8F A;  4OZY A;  4XN3 A;  1O8J A;  2VFM A;  4XLA A;  3SZE A;  1DBG A;  4XKV A;  1QQ1 A;  3ML3 A;  4Z05 A;  2Z8G A;  1O88 A;  2BM7 A;  1O8G A;  1OFE A;  2B0R A;  2ODL A;  3JUR A;  3WWG A;  3ZSC A;  4PMH A;  1IB4 A;  3NAW A;  1PE9 A;  1LLW A;  3N6Z A;  1QCX A;  3LMW A;  1BN8 A;  1OFL A;  2NT6 A;  2VJJ A;  2J8I A;  5C1E A;  2UVE A;  4XLE A;  2VFO A;  3JX8 A;  2YUH A;  4XLC A;  5JLV C;  2QX3 A;  1OFM A;  4OJL A;  4OJO A;  3VSV A;  4Z03 A;  1EZG A;  4V02 C;  2X3H A;  3SY2 A;  2XTW A;  1CZF A;  3TH0 A;  3VST A;  2O04 A;  2NT9 A;  3P4G A;  1X0C A;  4KH3 A;  4OJ6 A;  4XNF A;  2QZA A;  1RWR A;  1OGM X;  2BSP A;  4U4B A;  1TYW A;  2G0Y A;  3SQV A;  2XTX A;  1TSP A;  2QYU A;  3ZPP A;  1O8M A;  2O6W A;  2INV A;  2NZM A;  3RIQ A;  1GQ8 A;  1PLU A;  4EW9 A;  4YEL A;  4XM3 A;  4JRA C;  1CLW A;  1WXR A;  3GRH A;  4NK6 A;  4U49 A;  2VFN A;  2VFQ A;  1LM1 A;  1LLZ A;  2W7Z A;  2J8K A;  1O8D A;  4XMY A;  2UVF A;  2VBK A;  2X85 A;  3LYC A;  3GQA A;  1RMG A; 
#chains in the Genus database with same CATH homology
 1JRG A;  1JTA A;  3EQO A;  2O0V A;  4XOT A;  1IDK A;  5C1C A;  2PEC A;  1H80 A;  4W8Q A;  1O8E A;  4XN0 A;  2QY1 A;  1NHC A;  2O17 A;  2NTP A;  3VMW A;  1WMR A;  3VMV A;  3B8Y A;  4C2L A;  1O8H A;  4NK8 A;  3VSU A;  3EQN A;  1K5C A;  2VBE A;  1EE6 A;  4XON A;  2O0W A;  3GQ9 A;  1QJV A;  3FY3 A;  1O8I A;  3B4N A;  4I84 A;  1IDJ A;  3GQ8 A;  4Z06 A;  2PYG A;  3T9G A;  1VBL A;  2PYH A;  4YZQ A;  1PXZ A;  2IQ7 A;  2INU A;  2VBM A;  4OJP A;  1KCC A;  2X6W A;  1HG8 A;  1OOC A;  3UW0 A;  1BHE A;  1KTW A;  1RU4 A;  4HWV A;  4YZA A;  4XKW A;  1AIR A;  2VJI A;  2X6Y A;  2NTQ A;  4W8S A;  1DBO A;  4XR6 A;  4XQF A;  4AVZ A;  5AMV A;  4XOP A;  4MXN A;  4MR0 A;  4URR A;  1OGO X;  2EWE A;  2QXZ A;  1O8L A;  1XG2 A;  1IA5 A;  2O1D A;  4XLF A;  2NTB A;  4YEJ A;  1O8K A;  1KCD A;  4OZZ A;  2NSP A;  1O8F A;  3B90 A;  2X6X A;  3SUC A;  4XL9 A;  4W8R A;  3KRG A;  4XOR A;  3GQ7 A;  4YZ0 A;  4OJ5 A;  4W8T A;  4YZX A;  2NST A;  4XLH A;  4OZY A;  4XN3 A;  1O8J A;  4XLA A;  1DBG A;  4XKV A;  4Z05 A;  2Z8G A;  1O88 A;  3JUR A;  1O8G A;  3WWG A;  2ODL A;  3ZSC A;  4PMH A;  1IB4 A;  1PE9 A;  1QCX A;  3LMW A;  1BN8 A;  1OFL A;  2NT6 A;  2VJJ A;  5C1E A;  2UVE A;  4XLE A;  4XLC A;  2QX3 A;  1OFM A;  4OJL A;  4OJO A;  3VSV A;  4Z03 A;  2X3H A;  1CZF A;  3VST A;  2O04 A;  2NT9 A;  4OJ6 A;  1X0C A;  4XNF A;  1RWR A;  1OGM X;  2BSP A;  4U4B A;  3ZPP A;  1O8M A;  2INV A;  2NZM A;  1GQ8 A;  1PLU A;  4EW9 A;  4YEL A;  4XM3 A;  3GRH A;  4NK6 A;  4U49 A;  1O8D A;  4XMY A;  2UVF A;  2VBK A;  2X85 A;  3GQA A;  1RMG A; 
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