1O8DA

Pectate lyase c from erwinia chrysanthemi at ph 11.2 with 5mm ca2+
Total Genus 134
50100150200250300350020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
134
sequence length
352
structure length
352
Chain Sequence
ATDTGGYAATAGGNVTGAVSKTATSMQDIVNIIDAARLDANGKKVKGGAYPLVITYTGNEDSLINAAAANICGQWSKDPRGVEIKEFTKGITIIGANGSSANFGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGVKKVGLDGSSSSDTGRNITYHHNYYNDVNARLPLQRGGLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKAINPVTSRYDGKNFGTWVLKGNNITKPADFSTYSITWTADTKPYVNADSWTSTGTFPTVAYNYSPVSAQCVKDKLPGYAGVGKNLATLTSTAC
5010015020025030035035030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Erwinia chrysanthemi
publication title Characterization and Implications of Ca2+ Binding to Pectate Lyase C
pubmed doi rcsb
molecule keywords PECTATE LYASE C
total genus 134
structure length 352
sequence length 352
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2002-11-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1o8dA00
4W8QA 2X6YA 2QX3A 1HG8A 3B4NA 2NT6A 5AMVA 3VSUA 2O1DA 1DBGA 4NK8A 1BHEA 1OGOX 1O88A 4XN3A 1RWRA 4Z06A 4W8RA 1XG2A 1IDKA 2ODLA 4XL9A 1GQ8A 2X3HA 2VBEA 4XM3A 2BSPA 4XOTA 2VJIA 3VMWA 3T9GA 1O8DA 4XMYA 4C2LA 2IQ7A 4OJPA 2X6XA 2O04A 2PECA 1JTAA 1AIRA 1O8JA 1O8IA 1QJVA 4Z05A 1OOCA 4AVZA 1K5CA 1IA5A 1O8MA 4MR0A 3JURA 4XR6A 2INVA 4XLFA 1BN8A 1IDJA 1X0CA 1PLUA 1RMGA 2PYGA 2EWEA 4XLAA 2INUA 4OZZA 3SUCA 1O8LA 2O17A 3GRHA 4OJ6A 4XLEA 2NSPA 3VMVA 2VBMA 2O0VA 3EQOA 4XNFA 2UVEA 1H80A 2NZMA 4XLHA 1O8FA 2UVFA 1O8EA 4XOPA 2X6WA 4HWVA 1QCXA 4MXNA 2NTPA 1OFMA 3GQ8A 4EW9A 3EQNA 4XLCA 1O8GA 2NT9A 4PMHA 1KCCA 4URRA 4XONA 1JRGA 1RU4A 3VSTA 4XORA 4YEJA 4OZYA 4XN0A 3GQ7A 4YELA 1PXZA 2QXZA 4W8TA 2VJJA 4YZAA 4W8SA 4NK6A 1IB4A 4U4BA 4XQFA 1OFLA 4OJLA 2NTQA 3GQAA 4YZ0A 3WWGA 4OJOA 5C1EA 3B90A 3ZSCA 1EE6A 4U49A 2Z8GA 3UW0A 4Z03A 3LMWA 4XKWA 1O8KA 1PE9A 4YZXA 3ZPPA 3B8YA 2VBKA 1OGMX 1VBLA 2QY1A 4I84A 1WMRA 1O8HA 2NTBA 1KCDA 3KRGA 2NSTA 1CZFA 1NHCA 4YZQA 2PYHA 5C1CA 2O0WA 1DBOA 1KTWA 2X85A 4XKVA 4OJ5A 3FY3A 3GQ9A 3VSVA
chains in the Genus database with same CATH superfamily
4W8QA 2X6YA 2QX3A 1HG8A 2V5IA 3B4NA 1EA0A 2NT6A 5AMVA 1TYVA 3VSUA 1TYUA 2O6WA 2O1DA 1DBGA 4NK8A 1BHEA 1OGOX 1O88A 4XN3A 1RWRA 4Z06A 4W8RA 1XG2A 1IDKA 2ODLA 4XL9A 1GQ8A 1K4ZA 2VBEA 1LLZA 1TYWA 2BSPA 2X3HA 4XM3A 4YDTA 4OM9A 4XOTA 2VJIA 1DABA 2J8IA 3VMWA 3T9GA 3H09A 1O8DA 4XMYA 3DU1X 3LJYA 4C2LA 2IQ7A 2XTWA 4OJPA 2X6XA 2O04A 2PECA 3ML3A 1JTAA 1AIRA 2G0YA 1O8JA 2XTYA 1O8IA 1QJVA 3BH7B 4Z05A 3AK5A 1OOCA 2J8KA 2XT2A 4AVZA 1K5CA 1IA5A 1O8MA 1EZGA 4MR0A 3JURA 4XR6A 4YCQA 2INVA 4XLFA 1BN8A 1IDJA 1X0CA 1PLUA 1RMGA 2PYGA 2EWEA 4XLAA 2F3LA 2INUA 2QYUA 4OZZA 3SUCA 2VFPA 3SZEA 1O8LA 2O17A 3GRHA 4OJ6A 4XLEA 2NSPA 2W7ZA 1QQ1A 3VMVA 2VBMA 2O0VA 3EQOA 1K8FA 4XNFA 5DNSA 4JRAC 2UVEA 2B0RA 1H80A 2NZMA 2IOUG 3SQVA 4XLHA 2BM6A 1O8FA 2UVFA 1O8EA 2XC1A 2X6WA 4XOPA 4HWVA 1QCXA 3PSZA 1QRBA 2XT4A 4MXNA 1OFMA 2NTPA 5JMCB 3GQ8A 4V02C 2BM4A 3EQNA 3N6ZA 1O8GA 2NT9A 4PMHA 4XLCA 1OFEA 4EW9A 4URRA 1KCCA 3SYJA 4XONA 1JRGA 1RU4A 3N90A 1OFDA 3VSTA 4XORA 4YEJA 3PSSA 1QA2A 3TH0A 4OZYA 4XN0A 3GQ7A 1TSPA 4YELA 1PXZA 2QXZA 4W8TA 2VJJA 4YZAA 4W8SA 4OPWA 4NK6A 1IB4A 4U4BA 2VFOA 1KQ5A 3NB2A 2BM7A 2XTXA 1LLWA 4XQFA 2VFMA 3NAWA 1OFLA 4OJLA 2NTQA 3GQAA 1WXRA 4YZ0A 3WWGA 4OJOA 4YEIA 3P4GA 5C1EA 3B90A 3ZSCA 1EE6A 4U49A 2Z8GA 2BM5A 3UW0A 4YC5A 4Z03A 3LMWA 4XKWA 3LYCA 4YFOA 1O8KA 3RIQA 1PE9A 4YZXA 1CLWA 2YUHA 3ZPPA 1QRCA 3B8YA 2VBKA 1OGMX 1VBLA 2QY1A 3JX8A 4I84A 2BX6A 1WMRA 1O8HA 2NTBA 1KCDA 3KRGA 2NSTA 2QZAA 1CZFA 1NHCA 3SY2A 4YZQA 2VFQA 4KH3A 5JLVC 1QA3A 2PYHA 5C1CA 2O0WA 1DBOA 1LM1A 1QA1A 1KTWA 3PETA 2X85A 4XKVA 1TYXA 2VFNA 1L1IA 1HF2A 3BH6B 3FY3A 3GQ9A 4OJ5A 3VSVA
chains in the Genus database with same CATH topology
4W8QA 2X6YA 2QX3A 1HG8A 3B4NA 2NT6A 5AMVA 3VSUA 2O1DA 1DBGA 4NK8A 1BHEA 1OGOX 1O88A 4XN3A 1RWRA 4Z06A 4W8RA 1XG2A 1IDKA 2ODLA 4XL9A 1GQ8A 2X3HA 2VBEA 4XM3A 2BSPA 4XOTA 2VJIA 3VMWA 3T9GA 1O8DA 4XMYA 4C2LA 2IQ7A 4OJPA 2X6XA 2O04A 2PECA 1JTAA 1AIRA 1O8JA 1O8IA 1QJVA 4Z05A 1OOCA 4AVZA 1K5CA 1IA5A 1O8MA 4MR0A 3JURA 4XR6A 2INVA 4XLFA 1BN8A 1IDJA 1X0CA 1PLUA 1RMGA 2PYGA 2EWEA 4XLAA 2INUA 4OZZA 3SUCA 1O8LA 2O17A 3GRHA 4OJ6A 4XLEA 2NSPA 3VMVA 2VBMA 2O0VA 3EQOA 4XNFA 2UVEA 1H80A 2NZMA 4XLHA 1O8FA 2UVFA 1O8EA 4XOPA 2X6WA 4HWVA 1QCXA 4MXNA 2NTPA 1OFMA 3GQ8A 4EW9A 3EQNA 4XLCA 1O8GA 2NT9A 4PMHA 1KCCA 4URRA 4XONA 1JRGA 1RU4A 3VSTA 4XORA 4YEJA 4OZYA 4XN0A 3GQ7A 4YELA 1PXZA 2QXZA 4W8TA 2VJJA 4YZAA 4W8SA 4NK6A 1IB4A 4U4BA 4XQFA 1OFLA 4OJLA 2NTQA 3GQAA 4YZ0A 3WWGA 4OJOA 5C1EA 3B90A 3ZSCA 1EE6A 4U49A 2Z8GA 3UW0A 4Z03A 3LMWA 4XKWA 1O8KA 1PE9A 4YZXA 3ZPPA 3B8YA 2VBKA 1OGMX 1VBLA 2QY1A 4I84A 1WMRA 1O8HA 2NTBA 1KCDA 3KRGA 2NSTA 1CZFA 1NHCA 4YZQA 2PYHA 5C1CA 2O0WA 1DBOA 1KTWA 2X85A 4XKVA 4OJ5A 3FY3A 3GQ9A 3VSVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4W8Q A;  2X6Y A;  2QX3 A;  1HG8 A;  3B4N A;  2NT6 A;  5AMV A;  3VSU A;  2O1D A;  1DBG A;  4NK8 A;  1BHE A;  1OGO X;  1O88 A;  4XN3 A;  1RWR A;  4Z06 A;  4W8R A;  1XG2 A;  1IDK A;  2ODL A;  4XL9 A;  1GQ8 A;  2X3H A;  2VBE A;  4XM3 A;  2BSP A;  4XOT A;  2VJI A;  3VMW A;  3T9G A;  1O8D A;  4XMY A;  4C2L A;  2IQ7 A;  4OJP A;  2X6X A;  2O04 A;  2PEC A;  1JTA A;  1AIR A;  1O8J A;  1O8I A;  1QJV A;  4Z05 A;  1OOC A;  4AVZ A;  1K5C A;  1IA5 A;  1O8M A;  4MR0 A;  3JUR A;  4XR6 A;  2INV A;  4XLF A;  1BN8 A;  1IDJ A;  1X0C A;  1PLU A;  1RMG A;  2PYG A;  2EWE A;  4XLA A;  2INU A;  4OZZ A;  3SUC A;  1O8L A;  2O17 A;  3GRH A;  4OJ6 A;  4XLE A;  2NSP A;  3VMV A;  2VBM A;  2O0V A;  3EQO A;  4XNF A;  2UVE A;  1H80 A;  2NZM A;  4XLH A;  1O8F A;  2UVF A;  1O8E A;  4XOP A;  2X6W A;  4HWV A;  1QCX A;  4MXN A;  2NTP A;  1OFM A;  3GQ8 A;  4EW9 A;  3EQN A;  4XLC A;  1O8G A;  2NT9 A;  4PMH A;  1KCC A;  4URR A;  4XON A;  1JRG A;  1RU4 A;  3VST A;  4XOR A;  4YEJ A;  4OZY A;  4XN0 A;  3GQ7 A;  4YEL A;  1PXZ A;  2QXZ A;  4W8T A;  2VJJ A;  4YZA A;  4W8S A;  4NK6 A;  1IB4 A;  4U4B A;  4XQF A;  1OFL A;  4OJL A;  2NTQ A;  3GQA A;  4YZ0 A;  3WWG A;  4OJO A;  5C1E A;  3B90 A;  3ZSC A;  1EE6 A;  4U49 A;  2Z8G A;  3UW0 A;  4Z03 A;  3LMW A;  4XKW A;  1O8K A;  1PE9 A;  4YZX A;  3ZPP A;  3B8Y A;  2VBK A;  1OGM X;  1VBL A;  2QY1 A;  4I84 A;  1WMR A;  1O8H A;  2NTB A;  1KCD A;  3KRG A;  2NST A;  1CZF A;  1NHC A;  4YZQ A;  2PYH A;  5C1C A;  2O0W A;  1DBO A;  1KTW A;  2X85 A;  4XKV A;  4OJ5 A;  3FY3 A;  3GQ9 A;  3VSV A; 
#chains in the Genus database with same CATH topology
 4W8Q A;  2X6Y A;  2QX3 A;  1HG8 A;  2V5I A;  3B4N A;  1EA0 A;  2NT6 A;  5AMV A;  1TYV A;  3VSU A;  1TYU A;  2O6W A;  2O1D A;  1DBG A;  4NK8 A;  1BHE A;  1OGO X;  1O88 A;  4XN3 A;  1RWR A;  4Z06 A;  4W8R A;  1XG2 A;  1IDK A;  2ODL A;  4XL9 A;  1GQ8 A;  1K4Z A;  2VBE A;  1LLZ A;  1TYW A;  2BSP A;  2X3H A;  4XM3 A;  4YDT A;  4OM9 A;  4XOT A;  2VJI A;  1DAB A;  2J8I A;  3VMW A;  3T9G A;  3H09 A;  1O8D A;  4XMY A;  3DU1 X;  3LJY A;  4C2L A;  2IQ7 A;  2XTW A;  4OJP A;  2X6X A;  2O04 A;  2PEC A;  3ML3 A;  1JTA A;  1AIR A;  2G0Y A;  1O8J A;  2XTY A;  1O8I A;  1QJV A;  3BH7 B;  4Z05 A;  3AK5 A;  1OOC A;  2J8K A;  2XT2 A;  4AVZ A;  1K5C A;  1IA5 A;  1O8M A;  1EZG A;  4MR0 A;  3JUR A;  4XR6 A;  4YCQ A;  2INV A;  4XLF A;  1BN8 A;  1IDJ A;  1X0C A;  1PLU A;  1RMG A;  2PYG A;  2EWE A;  4XLA A;  2F3L A;  2INU A;  2QYU A;  4OZZ A;  3SUC A;  2VFP A;  3SZE A;  1O8L A;  2O17 A;  3GRH A;  4OJ6 A;  4XLE A;  2NSP A;  2W7Z A;  1QQ1 A;  3VMV A;  2VBM A;  2O0V A;  3EQO A;  1K8F A;  4XNF A;  5DNS A;  4JRA C;  2UVE A;  2B0R A;  1H80 A;  2NZM A;  2IOU G;  3SQV A;  4XLH A;  2BM6 A;  1O8F A;  2UVF A;  1O8E A;  2XC1 A;  2X6W A;  4XOP A;  4HWV A;  1QCX A;  3PSZ A;  1QRB A;  2XT4 A;  4MXN A;  1OFM A;  2NTP A;  5JMC B;  3GQ8 A;  4V02 C;  2BM4 A;  3EQN A;  3N6Z A;  1O8G A;  2NT9 A;  4PMH A;  4XLC A;  1OFE A;  4EW9 A;  4URR A;  1KCC A;  3SYJ A;  4XON A;  1JRG A;  1RU4 A;  3N90 A;  1OFD A;  3VST A;  4XOR A;  4YEJ A;  3PSS A;  1QA2 A;  3TH0 A;  4OZY A;  4XN0 A;  3GQ7 A;  1TSP A;  4YEL A;  1PXZ A;  2QXZ A;  4W8T A;  2VJJ A;  4YZA A;  4W8S A;  4OPW A;  4NK6 A;  1IB4 A;  4U4B A;  2VFO A;  1KQ5 A;  3NB2 A;  2BM7 A;  2XTX A;  1LLW A;  4XQF A;  2VFM A;  3NAW A;  1OFL A;  4OJL A;  2NTQ A;  3GQA A;  1WXR A;  4YZ0 A;  3WWG A;  4OJO A;  4YEI A;  3P4G A;  5C1E A;  3B90 A;  3ZSC A;  1EE6 A;  4U49 A;  2Z8G A;  2BM5 A;  3UW0 A;  4YC5 A;  4Z03 A;  3LMW A;  4XKW A;  3LYC A;  4YFO A;  1O8K A;  3RIQ A;  1PE9 A;  4YZX A;  1CLW A;  2YUH A;  3ZPP A;  1QRC A;  3B8Y A;  2VBK A;  1OGM X;  1VBL A;  2QY1 A;  3JX8 A;  4I84 A;  2BX6 A;  1WMR A;  1O8H A;  2NTB A;  1KCD A;  3KRG A;  2NST A;  2QZA A;  1CZF A;  1NHC A;  3SY2 A;  4YZQ A;  2VFQ A;  4KH3 A;  5JLV C;  1QA3 A;  2PYH A;  5C1C A;  2O0W A;  1DBO A;  1LM1 A;  1QA1 A;  1KTW A;  3PET A;  2X85 A;  4XKV A;  1TYX A;  2VFN A;  1L1I A;  1HF2 A;  3BH6 B;  3FY3 A;  3GQ9 A;  4OJ5 A;  3VSV A; 
#chains in the Genus database with same CATH homology
 4W8Q A;  2X6Y A;  2QX3 A;  1HG8 A;  3B4N A;  2NT6 A;  5AMV A;  3VSU A;  2O1D A;  1DBG A;  4NK8 A;  1BHE A;  1OGO X;  1O88 A;  4XN3 A;  1RWR A;  4Z06 A;  4W8R A;  1XG2 A;  1IDK A;  2ODL A;  4XL9 A;  1GQ8 A;  2X3H A;  2VBE A;  4XM3 A;  2BSP A;  4XOT A;  2VJI A;  3VMW A;  3T9G A;  1O8D A;  4XMY A;  4C2L A;  2IQ7 A;  4OJP A;  2X6X A;  2O04 A;  2PEC A;  1JTA A;  1AIR A;  1O8J A;  1O8I A;  1QJV A;  4Z05 A;  1OOC A;  4AVZ A;  1K5C A;  1IA5 A;  1O8M A;  4MR0 A;  3JUR A;  4XR6 A;  2INV A;  4XLF A;  1BN8 A;  1IDJ A;  1X0C A;  1PLU A;  1RMG A;  2PYG A;  2EWE A;  4XLA A;  2INU A;  4OZZ A;  3SUC A;  1O8L A;  2O17 A;  3GRH A;  4OJ6 A;  4XLE A;  2NSP A;  3VMV A;  2VBM A;  2O0V A;  3EQO A;  4XNF A;  2UVE A;  1H80 A;  2NZM A;  4XLH A;  1O8F A;  2UVF A;  1O8E A;  4XOP A;  2X6W A;  4HWV A;  1QCX A;  4MXN A;  2NTP A;  1OFM A;  3GQ8 A;  4EW9 A;  3EQN A;  4XLC A;  1O8G A;  2NT9 A;  4PMH A;  1KCC A;  4URR A;  4XON A;  1JRG A;  1RU4 A;  3VST A;  4XOR A;  4YEJ A;  4OZY A;  4XN0 A;  3GQ7 A;  4YEL A;  1PXZ A;  2QXZ A;  4W8T A;  2VJJ A;  4YZA A;  4W8S A;  4NK6 A;  1IB4 A;  4U4B A;  4XQF A;  1OFL A;  4OJL A;  2NTQ A;  3GQA A;  4YZ0 A;  3WWG A;  4OJO A;  5C1E A;  3B90 A;  3ZSC A;  1EE6 A;  4U49 A;  2Z8G A;  3UW0 A;  4Z03 A;  3LMW A;  4XKW A;  1O8K A;  1PE9 A;  4YZX A;  3ZPP A;  3B8Y A;  2VBK A;  1OGM X;  1VBL A;  2QY1 A;  4I84 A;  1WMR A;  1O8H A;  2NTB A;  1KCD A;  3KRG A;  2NST A;  1CZF A;  1NHC A;  4YZQ A;  2PYH A;  5C1C A;  2O0W A;  1DBO A;  1KTW A;  2X85 A;  4XKV A;  4OJ5 A;  3FY3 A;  3GQ9 A;  3VSV A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.