1PE9A

Mutations in the t1.5 loop of pectate lyase a
Total Genus 132
50100150200250300350020406080100120
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
132
sequence length
361
structure length
361
Chain Sequence
AELVSDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNGSIFSDNGSVLNGSAVDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSGKL
5010015020025030035035030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
source organism Erwinia chrysanthemi
publication title Effect of mutations in the T1.5 loop of pectate lyase A from Erwinia chrysanthemi EC16.
pubmed doi rcsb
molecule keywords Pectate lyase A
total genus 132
structure length 361
sequence length 361
chains with identical sequence B
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2003-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1pe9A00
4XL9A 1RWRA 3ZPPA 4MR0A 3FY3A 3B90A 4W8TA 3ZSCA 2NTQA 4U49A 2VBKA 1O8EA 2EWEA 1H80A 1O8GA 1PXZA 2IQ7A 1JTAA 4XN3A 4XONA 2NSTA 4XKVA 1DBGA 1O8HA 2VJIA 2X3HA 2ODLA 2O17A 4C2LA 2NZMA 2UVFA 3WWGA 1EE6A 1OFMA 1O8IA 1XG2A 4W8RA 4OZYA 4I84A 3JURA 2O04A 4OJOA 1AIRA 1BHEA 3GQ7A 1O8FA 5AMVA 3VSVA 3UW0A 4YZ0A 1IA5A 1KCDA 2X85A 1JRGA 1HG8A 4OJPA 3GQAA 2O1DA 3EQOA 2O0WA 4XNFA 1PLUA 3T9GA 3VSTA 1O8MA 4Z06A 3VMWA 4Z03A 4URRA 1BN8A 1KTWA 1DBOA 4XN0A 3EQNA 1OGMX 2NTPA 1CZFA 1O88A 1RMGA 2BSPA 2UVEA 2QX3A 3GQ8A 2X6WA 4W8QA 4XKWA 1O8JA 4XM3A 3GQ9A 4PMHA 2Z8GA 4MXNA 4OZZA 2NT9A 4EW9A 4OJLA 5C1EA 4XQFA 4YZQA 1IDKA 1O8KA 4OJ6A 1PE9A 4XLFA 4XR6A 1K5CA 4YELA 1QJVA 1WMRA 3SUCA 3GRHA 4XLEA 2O0VA 2X6YA 4XMYA 1VBLA 4Z05A 1OOCA 1O8DA 4YZXA 4XLCA 2INUA 4OJ5A 1OFLA 4XOTA 4HWVA 4NK8A 4U4BA 3B4NA 2VBEA 1O8LA 3VMVA 2QY1A 2X6XA 1RU4A 1KCCA 4XORA 4XLHA 2NTBA 1QCXA 4W8SA 1OGOX 3VSUA 5C1CA 3B8YA 1GQ8A 2PYGA 2PECA 2INVA 4XOPA 3LMWA 1NHCA 2QXZA 1IDJA 3KRGA 4XLAA 2VBMA 1IB4A 4NK6A 1X0CA 2NT6A 4AVZA 2PYHA 4YZAA 2VJJA 4YEJA 2NSPA
chains in the Genus database with same CATH superfamily
4XL9A 1RWRA 3ZPPA 4MR0A 3FY3A 3B90A 4W8TA 1EZGA 2XT2A 3ZSCA 3AK5A 2F3LA 2NTQA 2XT4A 4U49A 2QYUA 2VBKA 4KH3A 1O8EA 2XTYA 2EWEA 1H80A 1O8GA 1PXZA 1TYXA 2IQ7A 2XTXA 1JTAA 3N6ZA 4V02C 2NSTA 2J8KA 1LM1A 4XKVA 4XN3A 4XONA 1DBGA 1O8HA 2VJIA 2X3HA 2ODLA 3TH0A 2O17A 4C2LA 2NZMA 2UVFA 3WWGA 1EE6A 3DU1X 1OFMA 2XTWA 1O8IA 3N90A 1XG2A 4W8RA 3ML3A 4OZYA 3RIQA 4I84A 2BX6A 3JURA 2O04A 4OJOA 1AIRA 3NB2A 1BHEA 3GQ7A 1O8FA 5AMVA 3VSVA 2V5IA 3UW0A 4YZ0A 1IA5A 3JX8A 1KCDA 1QA3A 1QA1A 2VFMA 2X85A 1JRGA 1HG8A 3PETA 4OJPA 3GQAA 2NSPA 2O1DA 1WXRA 3EQOA 2O0WA 4XNFA 1PLUA 1TSPA 3T9GA 5JLVC 4YC5A 3VSTA 1O8MA 4YCQA 4Z06A 3VMWA 1QQ1A 4Z03A 4URRA 1BN8A 1KTWA 1DBOA 4OM9A 4YDTA 2YUHA 3LJYA 4XN0A 2BM6A 3EQNA 1OGMX 1KQ5A 2BM4A 2NTPA 1CZFA 1QA2A 1O88A 2O6WA 1RMGA 2BSPA 2UVEA 2QX3A 2VFOA 3GQ8A 2X6WA 4W8QA 4XKWA 1O8JA 4XM3A 3GQ9A 1TYUA 2BM7A 4PMHA 2Z8GA 4MXNA 4OZZA 1TYWA 2NT9A 4EW9A 3PSSA 4OJLA 2G0YA 5C1EA 3NAWA 3PSZA 5JMCB 4XQFA 4YZQA 1QRCA 1IDKA 1O8KA 4OJ6A 1PE9A 4XLFA 4XR6A 1TYVA 1OFDA 1DABA 3SYJA 1K4ZA 1L1IA 1K5CA 2QZAA 4YELA 1QJVA 1WMRA 3SUCA 3GRHA 4XLEA 2O0VA 2X6YA 1OFEA 4XMYA 5DNSA 2W7ZA 1VBLA 4Z05A 1OOCA 1O8DA 4YZXA 4XLCA 2INUA 4OJ5A 1HF2A 3P4GA 1OFLA 4XOTA 2XC1A 3BH7B 4HWVA 4NK8A 2VFPA 4U4BA 3B4NA 1O8LA 2VBEA 3VMVA 2QY1A 1EA0A 2X6XA 1RU4A 3SZEA 1QRBA 1KCCA 2IOUG 4XLHA 2NTBA 4XORA 1K8FA 1QCXA 4W8SA 4YFOA 1OGOX 3VSUA 5C1CA 3SY2A 3H09A 3B8YA 1GQ8A 2PYGA 2B0RA 3BH6B 4JRAC 2PECA 2INVA 2J8IA 4XOPA 3LMWA 1NHCA 3SQVA 4YEIA 1CLWA 2QXZA 1IDJA 3KRGA 4XLAA 2VBMA 2BM5A 1IB4A 2VFNA 4NK6A 1LLZA 4OPWA 1X0CA 2NT6A 4AVZA 2PYHA 4YZAA 2VJJA 4YEJA 1LLWA 3LYCA 2VFQA
chains in the Genus database with same CATH topology
4XL9A 1RWRA 3ZPPA 4MR0A 3FY3A 3B90A 4W8TA 3ZSCA 2NTQA 4U49A 2VBKA 1O8EA 2EWEA 1H80A 1O8GA 1PXZA 2IQ7A 1JTAA 4XN3A 4XONA 2NSTA 4XKVA 1DBGA 1O8HA 2VJIA 2X3HA 2ODLA 2O17A 4C2LA 2NZMA 2UVFA 3WWGA 1EE6A 1OFMA 1O8IA 1XG2A 4W8RA 4OZYA 4I84A 3JURA 2O04A 4OJOA 1AIRA 1BHEA 3GQ7A 1O8FA 5AMVA 3VSVA 3UW0A 4YZ0A 1IA5A 1KCDA 2X85A 1JRGA 1HG8A 4OJPA 3GQAA 2O1DA 3EQOA 2O0WA 4XNFA 1PLUA 3T9GA 3VSTA 1O8MA 4Z06A 3VMWA 4Z03A 4URRA 1BN8A 1KTWA 1DBOA 4XN0A 3EQNA 1OGMX 2NTPA 1CZFA 1O88A 1RMGA 2BSPA 2UVEA 2QX3A 3GQ8A 2X6WA 4W8QA 4XKWA 1O8JA 4XM3A 3GQ9A 4PMHA 2Z8GA 4MXNA 4OZZA 2NT9A 4EW9A 4OJLA 5C1EA 4XQFA 4YZQA 1IDKA 1O8KA 4OJ6A 1PE9A 4XLFA 4XR6A 1K5CA 4YELA 1QJVA 1WMRA 3SUCA 3GRHA 4XLEA 2O0VA 2X6YA 4XMYA 1VBLA 4Z05A 1OOCA 1O8DA 4YZXA 4XLCA 2INUA 4OJ5A 1OFLA 4XOTA 4HWVA 4NK8A 4U4BA 3B4NA 2VBEA 1O8LA 3VMVA 2QY1A 2X6XA 1RU4A 1KCCA 4XORA 4XLHA 2NTBA 1QCXA 4W8SA 1OGOX 3VSUA 5C1CA 3B8YA 1GQ8A 2PYGA 2PECA 2INVA 4XOPA 3LMWA 1NHCA 2QXZA 1IDJA 3KRGA 4XLAA 2VBMA 1IB4A 4NK6A 1X0CA 2NT6A 4AVZA 2PYHA 4YZAA 2VJJA 4YEJA 2NSPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XL9 A;  1RWR A;  3ZPP A;  4MR0 A;  3FY3 A;  3B90 A;  4W8T A;  3ZSC A;  2NTQ A;  4U49 A;  2VBK A;  1O8E A;  2EWE A;  1H80 A;  1O8G A;  1PXZ A;  2IQ7 A;  1JTA A;  4XN3 A;  4XON A;  2NST A;  4XKV A;  1DBG A;  1O8H A;  2VJI A;  2X3H A;  2ODL A;  2O17 A;  4C2L A;  2NZM A;  2UVF A;  3WWG A;  1EE6 A;  1OFM A;  1O8I A;  1XG2 A;  4W8R A;  4OZY A;  4I84 A;  3JUR A;  2O04 A;  4OJO A;  1AIR A;  1BHE A;  3GQ7 A;  1O8F A;  5AMV A;  3VSV A;  3UW0 A;  4YZ0 A;  1IA5 A;  1KCD A;  2X85 A;  1JRG A;  1HG8 A;  4OJP A;  3GQA A;  2O1D A;  3EQO A;  2O0W A;  4XNF A;  1PLU A;  3T9G A;  3VST A;  1O8M A;  4Z06 A;  3VMW A;  4Z03 A;  4URR A;  1BN8 A;  1KTW A;  1DBO A;  4XN0 A;  3EQN A;  1OGM X;  2NTP A;  1CZF A;  1O88 A;  1RMG A;  2BSP A;  2UVE A;  2QX3 A;  3GQ8 A;  2X6W A;  4W8Q A;  4XKW A;  1O8J A;  4XM3 A;  3GQ9 A;  4PMH A;  2Z8G A;  4MXN A;  4OZZ A;  2NT9 A;  4EW9 A;  4OJL A;  5C1E A;  4XQF A;  4YZQ A;  1IDK A;  1O8K A;  4OJ6 A;  1PE9 A;  4XLF A;  4XR6 A;  1K5C A;  4YEL A;  1QJV A;  1WMR A;  3SUC A;  3GRH A;  4XLE A;  2O0V A;  2X6Y A;  4XMY A;  1VBL A;  4Z05 A;  1OOC A;  1O8D A;  4YZX A;  4XLC A;  2INU A;  4OJ5 A;  1OFL A;  4XOT A;  4HWV A;  4NK8 A;  4U4B A;  3B4N A;  2VBE A;  1O8L A;  3VMV A;  2QY1 A;  2X6X A;  1RU4 A;  1KCC A;  4XOR A;  4XLH A;  2NTB A;  1QCX A;  4W8S A;  1OGO X;  3VSU A;  5C1C A;  3B8Y A;  1GQ8 A;  2PYG A;  2PEC A;  2INV A;  4XOP A;  3LMW A;  1NHC A;  2QXZ A;  1IDJ A;  3KRG A;  4XLA A;  2VBM A;  1IB4 A;  4NK6 A;  1X0C A;  2NT6 A;  4AVZ A;  2PYH A;  4YZA A;  2VJJ A;  4YEJ A;  2NSP A; 
#chains in the Genus database with same CATH topology
 4XL9 A;  1RWR A;  3ZPP A;  4MR0 A;  3FY3 A;  3B90 A;  4W8T A;  1EZG A;  2XT2 A;  3ZSC A;  3AK5 A;  2F3L A;  2NTQ A;  2XT4 A;  4U49 A;  2QYU A;  2VBK A;  4KH3 A;  1O8E A;  2XTY A;  2EWE A;  1H80 A;  1O8G A;  1PXZ A;  1TYX A;  2IQ7 A;  2XTX A;  1JTA A;  3N6Z A;  4V02 C;  2NST A;  2J8K A;  1LM1 A;  4XKV A;  4XN3 A;  4XON A;  1DBG A;  1O8H A;  2VJI A;  2X3H A;  2ODL A;  3TH0 A;  2O17 A;  4C2L A;  2NZM A;  2UVF A;  3WWG A;  1EE6 A;  3DU1 X;  1OFM A;  2XTW A;  1O8I A;  3N90 A;  1XG2 A;  4W8R A;  3ML3 A;  4OZY A;  3RIQ A;  4I84 A;  2BX6 A;  3JUR A;  2O04 A;  4OJO A;  1AIR A;  3NB2 A;  1BHE A;  3GQ7 A;  1O8F A;  5AMV A;  3VSV A;  2V5I A;  3UW0 A;  4YZ0 A;  1IA5 A;  3JX8 A;  1KCD A;  1QA3 A;  1QA1 A;  2VFM A;  2X85 A;  1JRG A;  1HG8 A;  3PET A;  4OJP A;  3GQA A;  2NSP A;  2O1D A;  1WXR A;  3EQO A;  2O0W A;  4XNF A;  1PLU A;  1TSP A;  3T9G A;  5JLV C;  4YC5 A;  3VST A;  1O8M A;  4YCQ A;  4Z06 A;  3VMW A;  1QQ1 A;  4Z03 A;  4URR A;  1BN8 A;  1KTW A;  1DBO A;  4OM9 A;  4YDT A;  2YUH A;  3LJY A;  4XN0 A;  2BM6 A;  3EQN A;  1OGM X;  1KQ5 A;  2BM4 A;  2NTP A;  1CZF A;  1QA2 A;  1O88 A;  2O6W A;  1RMG A;  2BSP A;  2UVE A;  2QX3 A;  2VFO A;  3GQ8 A;  2X6W A;  4W8Q A;  4XKW A;  1O8J A;  4XM3 A;  3GQ9 A;  1TYU A;  2BM7 A;  4PMH A;  2Z8G A;  4MXN A;  4OZZ A;  1TYW A;  2NT9 A;  4EW9 A;  3PSS A;  4OJL A;  2G0Y A;  5C1E A;  3NAW A;  3PSZ A;  5JMC B;  4XQF A;  4YZQ A;  1QRC A;  1IDK A;  1O8K A;  4OJ6 A;  1PE9 A;  4XLF A;  4XR6 A;  1TYV A;  1OFD A;  1DAB A;  3SYJ A;  1K4Z A;  1L1I A;  1K5C A;  2QZA A;  4YEL A;  1QJV A;  1WMR A;  3SUC A;  3GRH A;  4XLE A;  2O0V A;  2X6Y A;  1OFE A;  4XMY A;  5DNS A;  2W7Z A;  1VBL A;  4Z05 A;  1OOC A;  1O8D A;  4YZX A;  4XLC A;  2INU A;  4OJ5 A;  1HF2 A;  3P4G A;  1OFL A;  4XOT A;  2XC1 A;  3BH7 B;  4HWV A;  4NK8 A;  2VFP A;  4U4B A;  3B4N A;  1O8L A;  2VBE A;  3VMV A;  2QY1 A;  1EA0 A;  2X6X A;  1RU4 A;  3SZE A;  1QRB A;  1KCC A;  2IOU G;  4XLH A;  2NTB A;  4XOR A;  1K8F A;  1QCX A;  4W8S A;  4YFO A;  1OGO X;  3VSU A;  5C1C A;  3SY2 A;  3H09 A;  3B8Y A;  1GQ8 A;  2PYG A;  2B0R A;  3BH6 B;  4JRA C;  2PEC A;  2INV A;  2J8I A;  4XOP A;  3LMW A;  1NHC A;  3SQV A;  4YEI A;  1CLW A;  2QXZ A;  1IDJ A;  3KRG A;  4XLA A;  2VBM A;  2BM5 A;  1IB4 A;  2VFN A;  4NK6 A;  1LLZ A;  4OPW A;  1X0C A;  2NT6 A;  4AVZ A;  2PYH A;  4YZA A;  2VJJ A;  4YEJ A;  1LLW A;  3LYC A;  2VFQ A; 
#chains in the Genus database with same CATH homology
 4XL9 A;  1RWR A;  3ZPP A;  4MR0 A;  3FY3 A;  3B90 A;  4W8T A;  3ZSC A;  2NTQ A;  4U49 A;  2VBK A;  1O8E A;  2EWE A;  1H80 A;  1O8G A;  1PXZ A;  2IQ7 A;  1JTA A;  4XN3 A;  4XON A;  2NST A;  4XKV A;  1DBG A;  1O8H A;  2VJI A;  2X3H A;  2ODL A;  2O17 A;  4C2L A;  2NZM A;  2UVF A;  3WWG A;  1EE6 A;  1OFM A;  1O8I A;  1XG2 A;  4W8R A;  4OZY A;  4I84 A;  3JUR A;  2O04 A;  4OJO A;  1AIR A;  1BHE A;  3GQ7 A;  1O8F A;  5AMV A;  3VSV A;  3UW0 A;  4YZ0 A;  1IA5 A;  1KCD A;  2X85 A;  1JRG A;  1HG8 A;  4OJP A;  3GQA A;  2O1D A;  3EQO A;  2O0W A;  4XNF A;  1PLU A;  3T9G A;  3VST A;  1O8M A;  4Z06 A;  3VMW A;  4Z03 A;  4URR A;  1BN8 A;  1KTW A;  1DBO A;  4XN0 A;  3EQN A;  1OGM X;  2NTP A;  1CZF A;  1O88 A;  1RMG A;  2BSP A;  2UVE A;  2QX3 A;  3GQ8 A;  2X6W A;  4W8Q A;  4XKW A;  1O8J A;  4XM3 A;  3GQ9 A;  4PMH A;  2Z8G A;  4MXN A;  4OZZ A;  2NT9 A;  4EW9 A;  4OJL A;  5C1E A;  4XQF A;  4YZQ A;  1IDK A;  1O8K A;  4OJ6 A;  1PE9 A;  4XLF A;  4XR6 A;  1K5C A;  4YEL A;  1QJV A;  1WMR A;  3SUC A;  3GRH A;  4XLE A;  2O0V A;  2X6Y A;  4XMY A;  1VBL A;  4Z05 A;  1OOC A;  1O8D A;  4YZX A;  4XLC A;  2INU A;  4OJ5 A;  1OFL A;  4XOT A;  4HWV A;  4NK8 A;  4U4B A;  3B4N A;  2VBE A;  1O8L A;  3VMV A;  2QY1 A;  2X6X A;  1RU4 A;  1KCC A;  4XOR A;  4XLH A;  2NTB A;  1QCX A;  4W8S A;  1OGO X;  3VSU A;  5C1C A;  3B8Y A;  1GQ8 A;  2PYG A;  2PEC A;  2INV A;  4XOP A;  3LMW A;  1NHC A;  2QXZ A;  1IDJ A;  3KRG A;  4XLA A;  2VBM A;  1IB4 A;  4NK6 A;  1X0C A;  2NT6 A;  4AVZ A;  2PYH A;  4YZA A;  2VJJ A;  4YEJ A;  2NSP A; 
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