1QA2 | Genus

Total Genus 187

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	187
sequence length	554
structure length	542
Chain Sequence	YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSVQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__67873470896443__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__67873470896443__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/1QA2/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__67873470896443__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"67873470896443","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/1QA2/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__67873470896443__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Viral protein/receptor
source organism	Enterobacteria phage p22
publication title	Mutations improving the folding of phage P22 tailspike protein affect its receptor binding activity. pubmed doi rcsb
molecule keywords	TAILSPIKE PROTEIN
total genus	187
structure length	542
sequence length	554
ec nomenclature
pdb deposition date	1999-04-10

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF09251	PhageP22-tail	Salmonella phage P22 tail-spike

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.160.20.20	Mainly Beta	3 Solenoid	Pectate Lyase C-like	Pectate Lyase C-like	1qa2A00

4KH3A 2IOUG 1QA2A 4OM9A 3RIQA 1CLWA 1QA1A 1TYXA 1TSPA 2XC1A 3ML3A 1QRCA 2V5IA 2VFOA 1QQ1A 3SYJA 1TYWA 1TYVA 1QA3A 2VFMA 1DABA 3TH0A 1TYUA 2VFQA 3SZEA 2VFPA 3AK5A 1QRBA 3H09A 2VFNA 1WXRA
chains in the Genus database with same CATH superfamily

4KH3A 2BM5A 3VMVA 2NZMA 1IDKA 2NSPA 3BH7B 4OPWA 4YC5A 4PMHA 4URRA 4YZ0A 1OGMX 3LMWA 4XKVA 1TSPA 4XORA 1KCDA 2J8KA 3GQ9A 1IDJA 3VSTA 2V5IA 3VSUA 3BH6B 2VFOA 3DU1X 2O0VA 4Z06A 1K4ZA 3T9GA 1RWRA 2O6WA 2EWEA 2YUHA 2F3LA 4OJ5A 4MR0A 2PECA 2NSTA 3UW0A 1LLZA 2G0YA 2X6XA 5C1EA 4EW9A 5JLVC 1TYUA 1HG8A 1O8MA 1O8IA 4V02C 1NHCA 3SZEA 1BN8A 3AK5A 5AMVA 5C1CA 4XLCA 2VBMA 1KTWA 4W8SA 3JX8A 1PLUA 2QY1A 2QX3A 2NTQA 3EQNA 2IOUG 4XN0A 2BM6A 3B8YA 2INVA 3RIQA 1IB4A 3N6ZA 4YCQA 2XT4A 1OOCA 1OFEA 3ML3A 1QRCA 2W7ZA 4NK8A 4W8RA 4XKWA 3PSZA 1IA5A 2NTPA 2QZAA 2VJIA 1QJVA 4OJ6A 4OJLA 2VBKA 1DBOA 2O1DA 1TYWA 2NTBA 4YEIA 1JTAA 1KCCA 3GRHA 2VFMA 1O8DA 1DABA 2XTWA 3GQ8A 1O8KA 2ODLA 4Z03A 1WMRA 4XR6A 1O8LA 2BSPA 2X85A 1OFDA 1RMGA 2VJJA 1OFLA 1K5CA 3H09A 4OZYA 4XN3A 4Z05A 4XQFA 1PXZA 4I84A 4XLEA 1WXRA 1HF2A 2QXZA 3ZPPA 1RU4A 3LJYA 1EA0A 4XMYA 4OM9A 1LM1A 1QA1A 1BHEA 1TYXA 2UVEA 3KRGA 4YELA 1H80A 4OJPA 1DBGA 1O8FA 1QQ1A 3FY3A 4U49A 1KQ5A 4JRAC 3VSVA 2PYHA 4YFOA 2X6WA 3P4GA 4YDTA 3SY2A 4YZXA 2Z8GA 3SYJA 1TYVA 4AVZA 1K8FA 4MXNA 4XLHA 4XL9A 4XOTA 1QA3A 3SQVA 1JRGA 1CZFA 2XTYA 4XLAA 2UVFA 3TH0A 4YZAA 2VFQA 2BX6A 4HWVA 1VBLA 1QRBA 2VFNA 1O8JA 2XTXA 1EE6A 3N90A 3WWGA 4XOPA 2QYUA 2O17A 1QA2A 1EZGA 1LLWA 2BM4A 4XLFA 5JMCB 1AIRA 2VBEA 1CLWA 3LYCA 1GQ8A 2XC1A 3B90A 4XNFA 3VMWA 3ZSCA 3PETA 3NB2A 2NT9A 2BM7A 4OZZA 4YZQA 3SUCA 2X3HA 4YEJA 1QCXA 3NAWA 1OGOX 2X6YA 4OJOA 4XONA 2PYGA 2J8IA 1O8GA 3JURA 3PSSA 4W8TA 5DNSA 1O8HA 3B4NA 2B0RA 4W8QA 2O04A 3GQ7A 4XM3A 1O8EA 1XG2A 1X0CA 2IQ7A 3GQAA 1L1IA 1O88A 2O0WA 1PE9A 2INUA 2VFPA 4U4BA 2XT2A 1OFMA 2NT6A 3EQOA 4NK6A 4C2LA
chains in the Genus database with same CATH topology

1HF2A 4KH3A 2BM5A 3LJYA 2IOUG 1QA2A 2BM6A 3BH7B 4OPWA 4OM9A 2BM4A 5JMCB 3RIQA 1CLWA 3N6ZA 3LYCA 1TYXA 1TSPA 1QA1A 2XC1A 4OJPA 3PETA 3ML3A 1QRCA 2V5IA 2W7ZA 2VFOA 2BM7A 3BH6B 1QQ1A 1KQ5A 1K4ZA 4JRAC 4OJ6A 4OJLA 3P4GA 4OJOA 3SYJA 1TYWA 2YUHA 1TYVA 2F3LA 4OJ5A 1K8FA 2J8IA 1QA3A 2VFMA 1DABA 2G0YA 2B0RA 3TH0A 3N90A 1TYUA 4V02C 5JLVC 2VFQA 2BX6A 3SZEA 2VFPA 3AK5A 1QRBA 3H09A 2VFNA 1WXRA 3JX8A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4KH3 A;  2IOU G;  1QA2 A;  4OM9 A;  3RIQ A;  1CLW A;  1QA1 A;  1TYX A;  1TSP A;  2XC1 A;  3ML3 A;  1QRC A;  2V5I A;  2VFO A;  1QQ1 A;  3SYJ A;  1TYW A;  1TYV A;  1QA3 A;  2VFM A;  1DAB A;  3TH0 A;  1TYU A;  2VFQ A;  3SZE A;  2VFP A;  3AK5 A;  1QRB A;  3H09 A;  2VFN A;  1WXR A; 
#chains in the Genus database with same CATH topology
 4KH3 A;  2BM5 A;  3VMV A;  2NZM A;  1IDK A;  2NSP A;  3BH7 B;  4OPW A;  4YC5 A;  4PMH A;  4URR A;  4YZ0 A;  1OGM X;  3LMW A;  4XKV A;  1TSP A;  4XOR A;  1KCD A;  2J8K A;  3GQ9 A;  1IDJ A;  3VST A;  2V5I A;  3VSU A;  3BH6 B;  2VFO A;  3DU1 X;  2O0V A;  4Z06 A;  1K4Z A;  3T9G A;  1RWR A;  2O6W A;  2EWE A;  2YUH A;  2F3L A;  4OJ5 A;  4MR0 A;  2PEC A;  2NST A;  3UW0 A;  1LLZ A;  2G0Y A;  2X6X A;  5C1E A;  4EW9 A;  5JLV C;  1TYU A;  1HG8 A;  1O8M A;  1O8I A;  4V02 C;  1NHC A;  3SZE A;  1BN8 A;  3AK5 A;  5AMV A;  5C1C A;  4XLC A;  2VBM A;  1KTW A;  4W8S A;  3JX8 A;  1PLU A;  2QY1 A;  2QX3 A;  2NTQ A;  3EQN A;  2IOU G;  4XN0 A;  2BM6 A;  3B8Y A;  2INV A;  3RIQ A;  1IB4 A;  3N6Z A;  4YCQ A;  2XT4 A;  1OOC A;  1OFE A;  3ML3 A;  1QRC A;  2W7Z A;  4NK8 A;  4W8R A;  4XKW A;  3PSZ A;  1IA5 A;  2NTP A;  2QZA A;  2VJI A;  1QJV A;  4OJ6 A;  4OJL A;  2VBK A;  1DBO A;  2O1D A;  1TYW A;  2NTB A;  4YEI A;  1JTA A;  1KCC A;  3GRH A;  2VFM A;  1O8D A;  1DAB A;  2XTW A;  3GQ8 A;  1O8K A;  2ODL A;  4Z03 A;  1WMR A;  4XR6 A;  1O8L A;  2BSP A;  2X85 A;  1OFD A;  1RMG A;  2VJJ A;  1OFL A;  1K5C A;  3H09 A;  4OZY A;  4XN3 A;  4Z05 A;  4XQF A;  1PXZ A;  4I84 A;  4XLE A;  1WXR A;  1HF2 A;  2QXZ A;  3ZPP A;  1RU4 A;  3LJY A;  1EA0 A;  4XMY A;  4OM9 A;  1LM1 A;  1QA1 A;  1BHE A;  1TYX A;  2UVE A;  3KRG A;  4YEL A;  1H80 A;  4OJP A;  1DBG A;  1O8F A;  1QQ1 A;  3FY3 A;  4U49 A;  1KQ5 A;  4JRA C;  3VSV A;  2PYH A;  4YFO A;  2X6W A;  3P4G A;  4YDT A;  3SY2 A;  4YZX A;  2Z8G A;  3SYJ A;  1TYV A;  4AVZ A;  1K8F A;  4MXN A;  4XLH A;  4XL9 A;  4XOT A;  1QA3 A;  3SQV A;  1JRG A;  1CZF A;  2XTY A;  4XLA A;  2UVF A;  3TH0 A;  4YZA A;  2VFQ A;  2BX6 A;  4HWV A;  1VBL A;  1QRB A;  2VFN A;  1O8J A;  2XTX A;  1EE6 A;  3N90 A;  3WWG A;  4XOP A;  2QYU A;  2O17 A;  1QA2 A;  1EZG A;  1LLW A;  2BM4 A;  4XLF A;  5JMC B;  1AIR A;  2VBE A;  1CLW A;  3LYC A;  1GQ8 A;  2XC1 A;  3B90 A;  4XNF A;  3VMW A;  3ZSC A;  3PET A;  3NB2 A;  2NT9 A;  2BM7 A;  4OZZ A;  4YZQ A;  3SUC A;  2X3H A;  4YEJ A;  1QCX A;  3NAW A;  1OGO X;  2X6Y A;  4OJO A;  4XON A;  2PYG A;  2J8I A;  1O8G A;  3JUR A;  3PSS A;  4W8T A;  5DNS A;  1O8H A;  3B4N A;  2B0R A;  4W8Q A;  2O04 A;  3GQ7 A;  4XM3 A;  1O8E A;  1XG2 A;  1X0C A;  2IQ7 A;  3GQA A;  1L1I A;  1O88 A;  2O0W A;  1PE9 A;  2INU A;  2VFP A;  4U4B A;  2XT2 A;  1OFM A;  2NT6 A;  3EQO A;  4NK6 A;  4C2L A; 
#chains in the Genus database with same CATH homology
 1HF2 A;  4KH3 A;  2BM5 A;  3LJY A;  2IOU G;  1QA2 A;  2BM6 A;  3BH7 B;  4OPW A;  4OM9 A;  2BM4 A;  5JMC B;  3RIQ A;  1CLW A;  3N6Z A;  3LYC A;  1TYX A;  1TSP A;  1QA1 A;  2XC1 A;  4OJP A;  3PET A;  3ML3 A;  1QRC A;  2V5I A;  2W7Z A;  2VFO A;  2BM7 A;  3BH6 B;  1QQ1 A;  1KQ5 A;  1K4Z A;  4JRA C;  4OJ6 A;  4OJL A;  3P4G A;  4OJO A;  3SYJ A;  1TYW A;  2YUH A;  1TYV A;  2F3L A;  4OJ5 A;  1K8F A;  2J8I A;  1QA3 A;  2VFM A;  1DAB A;  2G0Y A;  2B0R A;  3TH0 A;  3N90 A;  1TYU A;  4V02 C;  5JLV C;  2VFQ A;  2BX6 A;  3SZE A;  2VFP A;  3AK5 A;  1QRB A;  3H09 A;  2VFN A;  1WXR A;  3JX8 A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1QA2A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations