1QRCA

Tailspike protein, mutant w391a
Total Genus 190

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
190
sequence length
554
structure length
543
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVADGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
publication title Plasticity and steric strain in a parallel beta-helix: rational mutations in the P22 tailspike protein.
pubmed doi rcsb
molecule keywords TAILSPIKE PROTEIN
total genus 190
structure length 543
sequence length 554
ec nomenclature
pdb deposition date 1999-06-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 1qrcA00
3AK5A 1TSPA 1TYXA 4KH3A 2XC1A 2VFMA 2V5IA 3H09A 1QRCA 4OM9A 1QA3A 2VFQA 1DABA 1QA1A 2VFOA 3ML3A 1QRBA 3SYJA 3RIQA 1QA2A 2IOUG 1CLWA 1TYUA 3SZEA 1WXRA 1TYVA 2VFPA 1TYWA 3TH0A 1QQ1A 2VFNA
chains in the Genus database with same CATH superfamily
3AK5A 4XMYA 3BH7B 3UW0A 4OPWA 2W7ZA 3JURA 1O8FA 1DBGA 4PMHA 1OGOX 2IQ7A 4XLHA 3SQVA 2O17A 1DBOA 2Z8GA 1RU4A 4YEIA 1HF2A 1QRCA 4V02C 4XOTA 3N6ZA 5C1EA 4W8QA 2BM6A 1O8KA 4OJLA 5JLVC 4JRAC 2O0VA 4YZAA 3JX8A 2NSTA 3KRGA 1KCDA 1QRBA 2O04A 1BN8A 2PYHA 4XNFA 1QA2A 2BM7A 2VJJA 2BM4A 4W8SA 1WXRA 4XLAA 3LYCA 3B8YA 1JTAA 1TYWA 1EZGA 3EQOA 3N90A 4YZQA 1NHCA 1KQ5A 4OJ5A 1PE9A 4OJ6A 1OFMA 1QQ1A 1K8FA 3PSZA 1O8JA 4C2LA 3GRHA 1TSPA 1PXZA 4KH3A 4EW9A 2O6WA 2X3HA 4YZXA 3GQ9A 4XKVA 3GQ7A 3VSVA 3B4NA 3H09A 1IDJA 2NTPA 2O1DA 1QJVA 2QY1A 1X0CA 1O8DA 3LJYA 1EA0A 2X6YA 2X6XA 2QZAA 4URRA 4XN0A 3ML3A 4XLCA 1CZFA 4XKWA 1LLZA 2G0YA 4NK8A 3VMWA 1OOCA 1O8EA 3SYJA 1PLUA 2IOUG 1CLWA 4I84A 1TYUA 3SZEA 2INVA 2PECA 1BHEA 1OFLA 4Z05A 2UVEA 3TH0A 2F3LA 1O8IA 1O8GA 4U49A 3NAWA 2XT2A 3SUCA 3PSSA 1XG2A 3EQNA 1IDKA 3P4GA 4OJPA 1TYXA 2PYGA 2XC1A 4XLEA 5AMVA 1AIRA 4MR0A 1RMGA 2O0WA 4XR6A 1O8HA 1O8MA 2VFMA 4Z06A 2X85A 2J8KA 2QXZA 2XTXA 3B90A 4OM9A 4OZZA 4YELA 5DNSA 3ZPPA 1EE6A 1HG8A 2NSPA 1JRGA 3GQAA 2BM5A 2QYUA 2VBMA 1DABA 3VSUA 4NK6A 3FY3A 2XTYA 4XL9A 4W8RA 3VSTA 1IB4A 1K5CA 1KCCA 2VBKA 2EWEA 2XTWA 5C1CA 1O88A 1GQ8A 1KTWA 1RWRA 2J8IA 4XM3A 4YFOA 3SY2A 2VFNA 1K4ZA 4OJOA 3T9GA 1O8LA 4XQFA 4OZYA 2ODLA 1OFDA 4HWVA 4XORA 4YCQA 2V5IA 3BH6B 4XOPA 4XONA 2INUA 4YEJA 4XN3A 1H80A 2B0RA 4U4BA 2BSPA 2UVFA 4YDTA 3PETA 1QA3A 4XLFA 1VBLA 2NT6A 2XT4A 2NT9A 1LLWA 2NTQA 2VFQA 3WWGA 1QA1A 2VFOA 2X6WA 4AVZA 1OGMX 1WMRA 1LM1A 5JMCB 3NB2A 3RIQA 2QX3A 2NTBA 4YZ0A 4W8TA 4YC5A 2NZMA 1TYVA 2VFPA 3DU1X 2BX6A 3GQ8A 2VJIA 3ZSCA 3LMWA 1QCXA 4MXNA 1IA5A 1L1IA 2VBEA 2YUHA 3VMVA 4Z03A 1OFEA
chains in the Genus database with same CATH topology
3AK5A 3P4GA 1TSPA 1TYXA 3BH7B 2XC1A 4KH3A 4OJPA 4OPWA 2W7ZA 2VFMA 2V5IA 3BH6B 3H09A 1HF2A 1QRCA 2B0RA 4OM9A 4V02C 2VFNA 3N6ZA 2BM6A 3PETA 3LJYA 1QA3A 4OJLA 2BM5A 5JLVC 2VFQA 4JRAC 1DABA 1QA1A 2VFOA 3ML3A 3JX8A 1QRBA 2G0YA 5JMCB 3SYJA 3RIQA 1QA2A 2BM7A 2IOUG 1CLWA 1TYUA 2BM4A 3SZEA 1TYVA 2VFPA 3LYCA 2BX6A 1WXRA 1TYWA 3TH0A 3N90A 2F3LA 2J8IA 1KQ5A 4OJ5A 4OJ6A 2YUHA 1QQ1A 1K8FA 1K4ZA 4OJOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AK5 A;  1TSP A;  1TYX A;  4KH3 A;  2XC1 A;  2VFM A;  2V5I A;  3H09 A;  1QRC A;  4OM9 A;  1QA3 A;  2VFQ A;  1DAB A;  1QA1 A;  2VFO A;  3ML3 A;  1QRB A;  3SYJ A;  3RIQ A;  1QA2 A;  2IOU G;  1CLW A;  1TYU A;  3SZE A;  1WXR A;  1TYV A;  2VFP A;  1TYW A;  3TH0 A;  1QQ1 A;  2VFN A; 
#chains in the Genus database with same CATH topology
 3AK5 A;  4XMY A;  3BH7 B;  3UW0 A;  4OPW A;  2W7Z A;  3JUR A;  1O8F A;  1DBG A;  4PMH A;  1OGO X;  2IQ7 A;  4XLH A;  3SQV A;  2O17 A;  1DBO A;  2Z8G A;  1RU4 A;  4YEI A;  1HF2 A;  1QRC A;  4V02 C;  4XOT A;  3N6Z A;  5C1E A;  4W8Q A;  2BM6 A;  1O8K A;  4OJL A;  5JLV C;  4JRA C;  2O0V A;  4YZA A;  3JX8 A;  2NST A;  3KRG A;  1KCD A;  1QRB A;  2O04 A;  1BN8 A;  2PYH A;  4XNF A;  1QA2 A;  2BM7 A;  2VJJ A;  2BM4 A;  4W8S A;  1WXR A;  4XLA A;  3LYC A;  3B8Y A;  1JTA A;  1TYW A;  1EZG A;  3EQO A;  3N90 A;  4YZQ A;  1NHC A;  1KQ5 A;  4OJ5 A;  1PE9 A;  4OJ6 A;  1OFM A;  1QQ1 A;  1K8F A;  3PSZ A;  1O8J A;  4C2L A;  3GRH A;  1TSP A;  1PXZ A;  4KH3 A;  4EW9 A;  2O6W A;  2X3H A;  4YZX A;  3GQ9 A;  4XKV A;  3GQ7 A;  3VSV A;  3B4N A;  3H09 A;  1IDJ A;  2NTP A;  2O1D A;  1QJV A;  2QY1 A;  1X0C A;  1O8D A;  3LJY A;  1EA0 A;  2X6Y A;  2X6X A;  2QZA A;  4URR A;  4XN0 A;  3ML3 A;  4XLC A;  1CZF A;  4XKW A;  1LLZ A;  2G0Y A;  4NK8 A;  3VMW A;  1OOC A;  1O8E A;  3SYJ A;  1PLU A;  2IOU G;  1CLW A;  4I84 A;  1TYU A;  3SZE A;  2INV A;  2PEC A;  1BHE A;  1OFL A;  4Z05 A;  2UVE A;  3TH0 A;  2F3L A;  1O8I A;  1O8G A;  4U49 A;  3NAW A;  2XT2 A;  3SUC A;  3PSS A;  1XG2 A;  3EQN A;  1IDK A;  3P4G A;  4OJP A;  1TYX A;  2PYG A;  2XC1 A;  4XLE A;  5AMV A;  1AIR A;  4MR0 A;  1RMG A;  2O0W A;  4XR6 A;  1O8H A;  1O8M A;  2VFM A;  4Z06 A;  2X85 A;  2J8K A;  2QXZ A;  2XTX A;  3B90 A;  4OM9 A;  4OZZ A;  4YEL A;  5DNS A;  3ZPP A;  1EE6 A;  1HG8 A;  2NSP A;  1JRG A;  3GQA A;  2BM5 A;  2QYU A;  2VBM A;  1DAB A;  3VSU A;  4NK6 A;  3FY3 A;  2XTY A;  4XL9 A;  4W8R A;  3VST A;  1IB4 A;  1K5C A;  1KCC A;  2VBK A;  2EWE A;  2XTW A;  5C1C A;  1O88 A;  1GQ8 A;  1KTW A;  1RWR A;  2J8I A;  4XM3 A;  4YFO A;  3SY2 A;  2VFN A;  1K4Z A;  4OJO A;  3T9G A;  1O8L A;  4XQF A;  4OZY A;  2ODL A;  1OFD A;  4HWV A;  4XOR A;  4YCQ A;  2V5I A;  3BH6 B;  4XOP A;  4XON A;  2INU A;  4YEJ A;  4XN3 A;  1H80 A;  2B0R A;  4U4B A;  2BSP A;  2UVF A;  4YDT A;  3PET A;  1QA3 A;  4XLF A;  1VBL A;  2NT6 A;  2XT4 A;  2NT9 A;  1LLW A;  2NTQ A;  2VFQ A;  3WWG A;  1QA1 A;  2VFO A;  2X6W A;  4AVZ A;  1OGM X;  1WMR A;  1LM1 A;  5JMC B;  3NB2 A;  3RIQ A;  2QX3 A;  2NTB A;  4YZ0 A;  4W8T A;  4YC5 A;  2NZM A;  1TYV A;  2VFP A;  3DU1 X;  2BX6 A;  3GQ8 A;  2VJI A;  3ZSC A;  3LMW A;  1QCX A;  4MXN A;  1IA5 A;  1L1I A;  2VBE A;  2YUH A;  3VMV A;  4Z03 A;  1OFE A; 
#chains in the Genus database with same CATH homology
 3AK5 A;  3P4G A;  1TSP A;  1TYX A;  3BH7 B;  2XC1 A;  4KH3 A;  4OJP A;  4OPW A;  2W7Z A;  2VFM A;  2V5I A;  3BH6 B;  3H09 A;  1HF2 A;  1QRC A;  2B0R A;  4OM9 A;  4V02 C;  2VFN A;  3N6Z A;  2BM6 A;  3PET A;  3LJY A;  1QA3 A;  4OJL A;  2BM5 A;  5JLV C;  2VFQ A;  4JRA C;  1DAB A;  1QA1 A;  2VFO A;  3ML3 A;  3JX8 A;  1QRB A;  2G0Y A;  5JMC B;  3SYJ A;  3RIQ A;  1QA2 A;  2BM7 A;  2IOU G;  1CLW A;  1TYU A;  2BM4 A;  3SZE A;  1TYV A;  2VFP A;  3LYC A;  2BX6 A;  1WXR A;  1TYW A;  3TH0 A;  3N90 A;  2F3L A;  2J8I A;  1KQ5 A;  4OJ5 A;  4OJ6 A;  2YUH A;  1QQ1 A;  1K8F A;  1K4Z A;  4OJO A; 
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