1RWRA

Crystal structure of filamentous hemagglutinin secretion domain
Total Genus 110

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
110
sequence length
297
structure length
297
Chain Sequence
QGLVPQGQTQVLQGGNKVPVVNIADPNSGGVSHNKFQQFNVANPGVVFNNGLTDGVSRIGGALTKNPNLTRQASAILAEVTDTSPSRLAGTLEVYGKGADLIIANPNGISVNGLSTLNASNLTLTTGRPSVNGGRIGLDVQQGTVTIERGGVNATGLGYFDVVARLVKLQGAVSSKQGKPLADIAVVAGANRYDHATRRATPIAAGARGAAAGAYAIDGTAAGAMYGKHITLVSSDSGLGVRQLGSLSSPSAITVSSQGEIALGDATVQRGPLSLKGAGVVSAGKLASGGGAVNVAG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (3-5)TII'1 (6-9)TI4 (66-69)TII'2 (14-17)S3 (20-22)S4 (31-39)TI1 (27-30)TII'3 (132-135)TVIII2 (73-76)S8 (75-80)S9 (86-96)TVIa1 (42-45)S5 (45-50)TIV1 (69-72)S6 (55-57)TI2 (57-60)S10 (99-104)TI7 (194-197)S12 (119-125)TI5 (105-108)S11 (109-117)S16 (152-153)TVIII3 (157-160)S14 (135-140)S18 (166-169)S15 (144-147)TI6 (148-151)TII1 (154-157)TII2 (176-179)S19 (173-174)S20 (183-188)S17 (159-164)S21 (191-194)TI8 (195-198)TII4 (236-239)TVIII4 (164-167)TI9 (220-223)TI10 (221-224)S24 (225-226)TVIII6 (227-230)TII3 (211-214)S26 (240-243)S23 (215-219)S27 (247-249)TI11 (249-252)S25 (229-234)TIV5 (257-260)S28 (252-257)TIV6 (268-271)TIV7 (277-280)S29 (261-268)TIV9 (288-291)S31 (281-288)S32 (292-295)S2 (10-12)S7 (61-63)S13 (128-132)TIV3 (116-119)S22 (199-202)S30 (272-277)Updating...
connected with : NaN
molecule tags Cell adhesion
source organism Bordetella pertussis
publication title The crystal structure of filamentous hemagglutinin secretion domain and its implications for the two-partner secretion pathway
pubmed doi rcsb
molecule keywords Filamentous hemagglutinin
total genus 110
structure length 297
sequence length 297
ec nomenclature
pdb deposition date 2003-12-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1rwrA00
4XL9A 2X6WA 2BSPA 4NK8A 3VSUA 2UVEA 1JTAA 4Z05A 3B8YA 3EQNA 2EWEA 4OJLA 4XN3A 1IB4A 2NTBA 3GRHA 1O8EA 3ZPPA 1AIRA 2NSTA 4OJ5A 4PMHA 2UVFA 2INUA 2NT9A 4XONA 4XLAA 2VBKA 1XG2A 4YEJA 3GQAA 4OJOA 2NTPA 2O0VA 4Z03A 1BHEA 1VBLA 3JURA 3GQ9A 3ZSCA 1DBGA 3EQOA 3VSTA 1IDKA 4XQFA 2VBMA 2X6YA 4XLCA 2NZMA 3VMWA 4OJ6A 1O8JA 1X0CA 1OGOX 4URRA 1O8IA 4EW9A 1QJVA 2O0WA 2PYHA 4C2LA 1DBOA 1O88A 1KTWA 2QY1A 4W8TA 1PE9A 2O1DA 5C1EA 3FY3A 3GQ7A 1CZFA 4XNFA 1RMGA 4YZXA 4U4BA 4OJPA 1OGMX 2X6XA 2O04A 4W8QA 1EE6A 2VBEA 1IA5A 3VMVA 1O8LA 1QCXA 1RU4A 4XLHA 4XKWA 1KCDA 4XOTA 4YZAA 4XOPA 2X3HA 1IDJA 4XR6A 2IQ7A 4OZYA 4XKVA 2Z8GA 2O17A 3GQ8A 1RWRA 5C1CA 1O8FA 1O8HA 1H80A 2PYGA 4XLFA 1OFMA 1PXZA 3UW0A 1JRGA 1OFLA 1GQ8A 3LMWA 4MR0A 4MXNA 4XM3A 2VJJA 1O8MA 4W8RA 5AMVA 1HG8A 2INVA 3VSVA 3B4NA 4YZ0A 3B90A 1O8GA 2X85A 4OZZA 4XORA 1O8DA 4XMYA 4YELA 1NHCA 4AVZA 1O8KA 4U49A 2NT6A 3KRGA 2VJIA 2QXZA 2NTQA 4XLEA 4NK6A 1K5CA 2QX3A 1BN8A 4XN0A 1KCCA 2NSPA 4YZQA 3SUCA 4Z06A 2ODLA 1OOCA 4HWVA 4I84A 1PLUA 2PECA 3WWGA 3T9GA 4W8SA 1WMRA
chains in the Genus database with same CATH superfamily
4XL9A 2X6WA 2BSPA 2XTWA 5DNSA 1L1IA 3PSZA 4NK8A 3VSUA 2UVEA 2XC1A 1JTAA 4Z05A 4YDTA 3B8YA 3EQNA 2EWEA 4OJLA 4XN3A 1IB4A 1QA3A 2NTBA 3PSSA 3GRHA 3SQVA 1O8EA 3ZPPA 2YUHA 5JMCB 1AIRA 1KQ5A 2NSTA 2BM4A 3NB2A 4OJ5A 1LLWA 1OFDA 4PMHA 2UVFA 2VFNA 3AK5A 2INUA 2NT9A 3RIQA 3H09A 2BM5A 4XONA 2XTXA 4XLAA 2VBKA 1XG2A 4YEJA 3GQAA 4OJOA 2NTPA 2O0VA 4Z03A 1BHEA 3N90A 2BM6A 1VBLA 3JURA 3GQ9A 3ZSCA 3LYCA 2V5IA 1DBGA 3EQOA 4JRAC 3VSTA 2B0RA 1IDKA 1TYXA 3N6ZA 4XQFA 2VBMA 2J8IA 2X6YA 4XLCA 2NZMA 3VMWA 4OJ6A 2G0YA 4KH3A 1O8JA 1X0CA 1OGOX 4URRA 1O8IA 4EW9A 1QJVA 2O0WA 2PYHA 4C2LA 1DBOA 1O88A 1KTWA 2VFOA 5JLVC 2QY1A 4W8TA 1QRCA 2XT4A 1PE9A 4YCQA 2O1DA 5C1EA 3FY3A 3GQ7A 1EA0A 1CZFA 4XNFA 1RMGA 4YZXA 4U4BA 4OJPA 1OGMX 2X6XA 1TYVA 2O04A 4W8QA 1CLWA 1EE6A 2J8KA 2VBEA 1IA5A 3VMVA 1O8LA 1QCXA 1RU4A 2XTYA 4XLHA 2VFPA 4OPWA 3SZEA 1TYUA 4XKWA 2BM7A 1KCDA 2XT2A 3JX8A 4XOTA 2QYUA 3NAWA 4YZAA 3LJYA 4YEIA 2O6WA 4XOPA 1OFEA 2IOUG 2X3HA 1IDJA 4XR6A 4YC5A 2IQ7A 4OZYA 2VFMA 4XKVA 2Z8GA 1TSPA 2O17A 2F3LA 3GQ8A 1RWRA 5C1CA 1O8FA 1O8HA 1QA2A 1H80A 2PYGA 1K4ZA 1OFMA 2QZAA 1PXZA 4XLFA 1JRGA 3UW0A 3PETA 3P4GA 1OFLA 1GQ8A 3LMWA 4MR0A 4MXNA 4XM3A 2VJJA 3TH0A 1O8MA 4W8RA 4YFOA 5AMVA 3BH6B 1HG8A 2INVA 3VSVA 3B4NA 4YZ0A 1QA1A 3B90A 1O8GA 1WXRA 2X85A 3SYJA 2BX6A 4OZZA 1LLZA 4XORA 1O8DA 4XMYA 4YELA 1NHCA 4AVZA 1O8KA 1QRBA 4OM9A 2NT6A 3KRGA 4U49A 1LM1A 2QXZA 2VJIA 3BH7B 2NTQA 4XLEA 1HF2A 2VFQA 3ML3A 4NK6A 1K5CA 2QX3A 1BN8A 1QQ1A 4XN0A 1KCCA 1TYWA 2NSPA 4YZQA 4Z06A 1EZGA 2ODLA 3SUCA 1OOCA 2W7ZA 4HWVA 4V02C 3SY2A 3DU1X 1K8FA 4I84A 1PLUA 2PECA 3WWGA 3T9GA 1DABA 4W8SA 1WMRA
chains in the Genus database with same CATH topology
4XL9A 2X6WA 2BSPA 4NK8A 3VSUA 2UVEA 1JTAA 4Z05A 3B8YA 3EQNA 2EWEA 4OJLA 4XN3A 1IB4A 2NTBA 3GRHA 1O8EA 3ZPPA 1AIRA 2NSTA 4OJ5A 4PMHA 2UVFA 2INUA 2NT9A 4XONA 4XLAA 2VBKA 1XG2A 4YEJA 3GQAA 4OJOA 2NTPA 2O0VA 4Z03A 1BHEA 1VBLA 3JURA 3GQ9A 3ZSCA 1DBGA 3EQOA 3VSTA 1IDKA 4XQFA 2VBMA 2X6YA 4XLCA 2NZMA 3VMWA 4OJ6A 1O8JA 1X0CA 1OGOX 4URRA 1O8IA 4EW9A 1QJVA 2O0WA 2PYHA 4C2LA 1DBOA 1O88A 1KTWA 2QY1A 4W8TA 1PE9A 2O1DA 5C1EA 3FY3A 3GQ7A 1CZFA 4XNFA 1RMGA 4YZXA 4U4BA 4OJPA 1OGMX 2X6XA 2O04A 4W8QA 1EE6A 2VBEA 1IA5A 3VMVA 1O8LA 1QCXA 1RU4A 4XLHA 4XKWA 1KCDA 4XOTA 4YZAA 4XOPA 2X3HA 1IDJA 4XR6A 2IQ7A 4OZYA 4XKVA 2Z8GA 2O17A 3GQ8A 1RWRA 5C1CA 1O8FA 1O8HA 1H80A 2PYGA 4XLFA 1OFMA 1PXZA 3UW0A 1JRGA 1OFLA 1GQ8A 3LMWA 4MR0A 4MXNA 4XM3A 2VJJA 1O8MA 4W8RA 5AMVA 1HG8A 2INVA 3VSVA 3B4NA 4YZ0A 3B90A 1O8GA 2X85A 4OZZA 4XORA 1O8DA 4XMYA 4YELA 1NHCA 4AVZA 1O8KA 4U49A 2NT6A 3KRGA 2VJIA 2QXZA 2NTQA 4XLEA 4NK6A 1K5CA 2QX3A 1BN8A 4XN0A 1KCCA 2NSPA 4YZQA 3SUCA 4Z06A 2ODLA 1OOCA 4HWVA 4I84A 1PLUA 2PECA 3WWGA 3T9GA 4W8SA 1WMRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XL9 A;  2X6W A;  2BSP A;  4NK8 A;  3VSU A;  2UVE A;  1JTA A;  4Z05 A;  3B8Y A;  3EQN A;  2EWE A;  4OJL A;  4XN3 A;  1IB4 A;  2NTB A;  3GRH A;  1O8E A;  3ZPP A;  1AIR A;  2NST A;  4OJ5 A;  4PMH A;  2UVF A;  2INU A;  2NT9 A;  4XON A;  4XLA A;  2VBK A;  1XG2 A;  4YEJ A;  3GQA A;  4OJO A;  2NTP A;  2O0V A;  4Z03 A;  1BHE A;  1VBL A;  3JUR A;  3GQ9 A;  3ZSC A;  1DBG A;  3EQO A;  3VST A;  1IDK A;  4XQF A;  2VBM A;  2X6Y A;  4XLC A;  2NZM A;  3VMW A;  4OJ6 A;  1O8J A;  1X0C A;  1OGO X;  4URR A;  1O8I A;  4EW9 A;  1QJV A;  2O0W A;  2PYH A;  4C2L A;  1DBO A;  1O88 A;  1KTW A;  2QY1 A;  4W8T A;  1PE9 A;  2O1D A;  5C1E A;  3FY3 A;  3GQ7 A;  1CZF A;  4XNF A;  1RMG A;  4YZX A;  4U4B A;  4OJP A;  1OGM X;  2X6X A;  2O04 A;  4W8Q A;  1EE6 A;  2VBE A;  1IA5 A;  3VMV A;  1O8L A;  1QCX A;  1RU4 A;  4XLH A;  4XKW A;  1KCD A;  4XOT A;  4YZA A;  4XOP A;  2X3H A;  1IDJ A;  4XR6 A;  2IQ7 A;  4OZY A;  4XKV A;  2Z8G A;  2O17 A;  3GQ8 A;  1RWR A;  5C1C A;  1O8F A;  1O8H A;  1H80 A;  2PYG A;  4XLF A;  1OFM A;  1PXZ A;  3UW0 A;  1JRG A;  1OFL A;  1GQ8 A;  3LMW A;  4MR0 A;  4MXN A;  4XM3 A;  2VJJ A;  1O8M A;  4W8R A;  5AMV A;  1HG8 A;  2INV A;  3VSV A;  3B4N A;  4YZ0 A;  3B90 A;  1O8G A;  2X85 A;  4OZZ A;  4XOR A;  1O8D A;  4XMY A;  4YEL A;  1NHC A;  4AVZ A;  1O8K A;  4U49 A;  2NT6 A;  3KRG A;  2VJI A;  2QXZ A;  2NTQ A;  4XLE A;  4NK6 A;  1K5C A;  2QX3 A;  1BN8 A;  4XN0 A;  1KCC A;  2NSP A;  4YZQ A;  3SUC A;  4Z06 A;  2ODL A;  1OOC A;  4HWV A;  4I84 A;  1PLU A;  2PEC A;  3WWG A;  3T9G A;  4W8S A;  1WMR A; 
#chains in the Genus database with same CATH topology
 4XL9 A;  2X6W A;  2BSP A;  2XTW A;  5DNS A;  1L1I A;  3PSZ A;  4NK8 A;  3VSU A;  2UVE A;  2XC1 A;  1JTA A;  4Z05 A;  4YDT A;  3B8Y A;  3EQN A;  2EWE A;  4OJL A;  4XN3 A;  1IB4 A;  1QA3 A;  2NTB A;  3PSS A;  3GRH A;  3SQV A;  1O8E A;  3ZPP A;  2YUH A;  5JMC B;  1AIR A;  1KQ5 A;  2NST A;  2BM4 A;  3NB2 A;  4OJ5 A;  1LLW A;  1OFD A;  4PMH A;  2UVF A;  2VFN A;  3AK5 A;  2INU A;  2NT9 A;  3RIQ A;  3H09 A;  2BM5 A;  4XON A;  2XTX A;  4XLA A;  2VBK A;  1XG2 A;  4YEJ A;  3GQA A;  4OJO A;  2NTP A;  2O0V A;  4Z03 A;  1BHE A;  3N90 A;  2BM6 A;  1VBL A;  3JUR A;  3GQ9 A;  3ZSC A;  3LYC A;  2V5I A;  1DBG A;  3EQO A;  4JRA C;  3VST A;  2B0R A;  1IDK A;  1TYX A;  3N6Z A;  4XQF A;  2VBM A;  2J8I A;  2X6Y A;  4XLC A;  2NZM A;  3VMW A;  4OJ6 A;  2G0Y A;  4KH3 A;  1O8J A;  1X0C A;  1OGO X;  4URR A;  1O8I A;  4EW9 A;  1QJV A;  2O0W A;  2PYH A;  4C2L A;  1DBO A;  1O88 A;  1KTW A;  2VFO A;  5JLV C;  2QY1 A;  4W8T A;  1QRC A;  2XT4 A;  1PE9 A;  4YCQ A;  2O1D A;  5C1E A;  3FY3 A;  3GQ7 A;  1EA0 A;  1CZF A;  4XNF A;  1RMG A;  4YZX A;  4U4B A;  4OJP A;  1OGM X;  2X6X A;  1TYV A;  2O04 A;  4W8Q A;  1CLW A;  1EE6 A;  2J8K A;  2VBE A;  1IA5 A;  3VMV A;  1O8L A;  1QCX A;  1RU4 A;  2XTY A;  4XLH A;  2VFP A;  4OPW A;  3SZE A;  1TYU A;  4XKW A;  2BM7 A;  1KCD A;  2XT2 A;  3JX8 A;  4XOT A;  2QYU A;  3NAW A;  4YZA A;  3LJY A;  4YEI A;  2O6W A;  4XOP A;  1OFE A;  2IOU G;  2X3H A;  1IDJ A;  4XR6 A;  4YC5 A;  2IQ7 A;  4OZY A;  2VFM A;  4XKV A;  2Z8G A;  1TSP A;  2O17 A;  2F3L A;  3GQ8 A;  1RWR A;  5C1C A;  1O8F A;  1O8H A;  1QA2 A;  1H80 A;  2PYG A;  1K4Z A;  1OFM A;  2QZA A;  1PXZ A;  4XLF A;  1JRG A;  3UW0 A;  3PET A;  3P4G A;  1OFL A;  1GQ8 A;  3LMW A;  4MR0 A;  4MXN A;  4XM3 A;  2VJJ A;  3TH0 A;  1O8M A;  4W8R A;  4YFO A;  5AMV A;  3BH6 B;  1HG8 A;  2INV A;  3VSV A;  3B4N A;  4YZ0 A;  1QA1 A;  3B90 A;  1O8G A;  1WXR A;  2X85 A;  3SYJ A;  2BX6 A;  4OZZ A;  1LLZ A;  4XOR A;  1O8D A;  4XMY A;  4YEL A;  1NHC A;  4AVZ A;  1O8K A;  1QRB A;  4OM9 A;  2NT6 A;  3KRG A;  4U49 A;  1LM1 A;  2QXZ A;  2VJI A;  3BH7 B;  2NTQ A;  4XLE A;  1HF2 A;  2VFQ A;  3ML3 A;  4NK6 A;  1K5C A;  2QX3 A;  1BN8 A;  1QQ1 A;  4XN0 A;  1KCC A;  1TYW A;  2NSP A;  4YZQ A;  4Z06 A;  1EZG A;  2ODL A;  3SUC A;  1OOC A;  2W7Z A;  4HWV A;  4V02 C;  3SY2 A;  3DU1 X;  1K8F A;  4I84 A;  1PLU A;  2PEC A;  3WWG A;  3T9G A;  1DAB A;  4W8S A;  1WMR A; 
#chains in the Genus database with same CATH homology
 4XL9 A;  2X6W A;  2BSP A;  4NK8 A;  3VSU A;  2UVE A;  1JTA A;  4Z05 A;  3B8Y A;  3EQN A;  2EWE A;  4OJL A;  4XN3 A;  1IB4 A;  2NTB A;  3GRH A;  1O8E A;  3ZPP A;  1AIR A;  2NST A;  4OJ5 A;  4PMH A;  2UVF A;  2INU A;  2NT9 A;  4XON A;  4XLA A;  2VBK A;  1XG2 A;  4YEJ A;  3GQA A;  4OJO A;  2NTP A;  2O0V A;  4Z03 A;  1BHE A;  1VBL A;  3JUR A;  3GQ9 A;  3ZSC A;  1DBG A;  3EQO A;  3VST A;  1IDK A;  4XQF A;  2VBM A;  2X6Y A;  4XLC A;  2NZM A;  3VMW A;  4OJ6 A;  1O8J A;  1X0C A;  1OGO X;  4URR A;  1O8I A;  4EW9 A;  1QJV A;  2O0W A;  2PYH A;  4C2L A;  1DBO A;  1O88 A;  1KTW A;  2QY1 A;  4W8T A;  1PE9 A;  2O1D A;  5C1E A;  3FY3 A;  3GQ7 A;  1CZF A;  4XNF A;  1RMG A;  4YZX A;  4U4B A;  4OJP A;  1OGM X;  2X6X A;  2O04 A;  4W8Q A;  1EE6 A;  2VBE A;  1IA5 A;  3VMV A;  1O8L A;  1QCX A;  1RU4 A;  4XLH A;  4XKW A;  1KCD A;  4XOT A;  4YZA A;  4XOP A;  2X3H A;  1IDJ A;  4XR6 A;  2IQ7 A;  4OZY A;  4XKV A;  2Z8G A;  2O17 A;  3GQ8 A;  1RWR A;  5C1C A;  1O8F A;  1O8H A;  1H80 A;  2PYG A;  4XLF A;  1OFM A;  1PXZ A;  3UW0 A;  1JRG A;  1OFL A;  1GQ8 A;  3LMW A;  4MR0 A;  4MXN A;  4XM3 A;  2VJJ A;  1O8M A;  4W8R A;  5AMV A;  1HG8 A;  2INV A;  3VSV A;  3B4N A;  4YZ0 A;  3B90 A;  1O8G A;  2X85 A;  4OZZ A;  4XOR A;  1O8D A;  4XMY A;  4YEL A;  1NHC A;  4AVZ A;  1O8K A;  4U49 A;  2NT6 A;  3KRG A;  2VJI A;  2QXZ A;  2NTQ A;  4XLE A;  4NK6 A;  1K5C A;  2QX3 A;  1BN8 A;  4XN0 A;  1KCC A;  2NSP A;  4YZQ A;  3SUC A;  4Z06 A;  2ODL A;  1OOC A;  4HWV A;  4I84 A;  1PLU A;  2PEC A;  3WWG A;  3T9G A;  4W8S A;  1WMR A; 
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