1TSP | Genus

Total Genus 185

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	185
sequence length	554
structure length	544
Chain Sequence	YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Late protein
publication title	Crystal structure of P22 tailspike protein: interdigitated subunits in a thermostable trimer. pubmed rcsb
molecule keywords	TAILSPIKE-PROTEIN
total genus	185
structure length	544
sequence length	554
ec nomenclature
pdb deposition date	1994-06-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF09251	PhageP22-tail	Salmonella phage P22 tail-spike

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.160.20.20	Mainly Beta	3 Solenoid	Pectate Lyase C-like	Pectate Lyase C-like	1tspA00

3H09A 3SYJA 1QA3A 1WXRA 3AK5A 1TYXA 3RIQA 3TH0A 1QA2A 1TYWA 2VFQA 1QRBA 4OM9A 1TSPA 1TYUA 2VFOA 2VFNA 1QQ1A 3ML3A 2V5IA 2VFMA 2VFPA 1QA1A 1TYVA 4KH3A 1QRCA 1CLWA 2XC1A 2IOUG 1DABA 3SZEA
chains in the Genus database with same CATH superfamily

1GQ8A 3NB2A 3B90A 4W8TA 1BN8A 4V02C 4XKWA 1EE6A 1VBLA 2W7ZA 3SQVA 4URRA 1O8JA 2NT6A 2QX3A 4XOPA 4EW9A 3PSSA 2INUA 2G0YA 1O8LA 1JRGA 4OJPA 4XLEA 4XNFA 4U49A 2VFNA 1L1IA 5C1CA 2F3LA 4OJ6A 2NT9A 1AIRA 1X0CA 2B0RA 2XT2A 2VBMA 4XLAA 2V5IA 3WWGA 2QYUA 4XOTA 4YZQA 4YZAA 3VSUA 2XT4A 1QA1A 5JLVC 4JRAC 1OGOX 4YEJA 4Z03A 2NSTA 4W8RA 4MR0A 2X6XA 3LMWA 1KTWA 3SZEA 3VSVA 4Z05A 1K8FA 2BM4A 3FY3A 5JMCB 1O88A 1NHCA 2NTBA 3PETA 1WXRA 1OFMA 2QXZA 4NK8A 3UW0A 4W8QA 2VJIA 4U4BA 2O0WA 2IQ7A 1TSPA 3GQAA 2Z8GA 3SY2A 1TYUA 3VSTA 2VFOA 4XORA 1PE9A 3NAWA 2O04A 1O8IA 3GQ7A 2INVA 4XLCA 5AMVA 3BH7B 3GQ9A 2PYHA 4I84A 2ODLA 2PECA 1OFLA 1KCCA 2J8IA 4YCQA 4YC5A 4YFOA 2UVFA 3JX8A 1CZFA 1EZGA 1KCDA 1O8FA 3B8YA 3N90A 2NTPA 4XM3A 1IDJA 1K4ZA 4YDTA 3RIQA 2QY1A 4XN0A 3TH0A 3EQOA 1QA2A 2VFQA 3B4NA 5C1EA 2O1DA 1O8EA 1QRBA 2X3HA 2VBEA 2BX6A 4OPWA 3DU1X 4Z06A 3BH6B 4XLFA 4OJLA 1H80A 1HG8A 1O8GA 1PXZA 2BSPA 3GRHA 2O6WA 2VJJA 4HWVA 3P4GA 4OZZA 1OFDA 2VFPA 2XTXA 1EA0A 3GQ8A 1RWRA 2XTWA 4XN3A 2VBKA 1IDKA 2EWEA 2PYGA 2O17A 2BM7A 4KH3A 2NTQA 4OJOA 3ZSCA 4MXNA 4YELA 2X6WA 2XC1A 1DBOA 3KRGA 4C2LA 1OOCA 4YZXA 4XLHA 1O8DA 1DABA 1KQ5A 1OGMX 3H09A 4XR6A 3SYJA 3ZPPA 3T9GA 2UVEA 2X85A 1O8HA 1LLZA 1QA3A 1QJVA 3AK5A 4W8SA 1TYXA 4XKVA 1K5CA 3SUCA 3JURA 3LYCA 4OJ5A 4PMHA 4XL9A 2QZAA 2BM5A 1DBGA 1TYWA 2O0VA 2NSPA 2NZMA 1IB4A 2BM6A 3LJYA 1O8KA 1O8MA 2YUHA 1LLWA 2J8KA 4OM9A 3N6ZA 4XONA 1RU4A 2X6YA 2XTYA 1QQ1A 1HF2A 1PLUA 3ML3A 4NK6A 4XQFA 2VFMA 1XG2A 3VMVA 4OZYA 3VMWA 1BHEA 1TYVA 1QCXA 1QRCA 5DNSA 1CLWA 1JTAA 1RMGA 4XMYA 1OFEA 3EQNA 4AVZA 4YEIA 3PSZA 4YZ0A 1IA5A 2IOUG 1WMRA 1LM1A
chains in the Genus database with same CATH topology

3JX8A 1K8FA 2BM4A 3H09A 5JMCB 3SYJA 3N90A 1QA3A 3PETA 1WXRA 1K4ZA 3AK5A 1TYXA 4V02C 3RIQA 4OJ5A 3LYCA 3TH0A 2W7ZA 2BM5A 1QA2A 1TYWA 2VFQA 1QRBA 2BM6A 2J8IA 2BX6A 3LJYA 4OPWA 1TSPA 2YUHA 3BH6B 4OM9A 1TYUA 2G0YA 3N6ZA 2VFOA 4OJPA 4OJLA 2VFNA 1QQ1A 2F3LA 4OJ6A 1HF2A 2B0RA 3ML3A 3P4GA 2V5IA 2VFMA 2VFPA 3BH7B 1QA1A 1TYVA 5JLVC 2BM7A 4KH3A 1QRCA 4JRAC 4OJOA 1CLWA 2XC1A 2IOUG 1DABA 1KQ5A 3SZEA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3H09 A;  3SYJ A;  1QA3 A;  1WXR A;  3AK5 A;  1TYX A;  3RIQ A;  3TH0 A;  1QA2 A;  1TYW A;  2VFQ A;  1QRB A;  4OM9 A;  1TSP A;  1TYU A;  2VFO A;  2VFN A;  1QQ1 A;  3ML3 A;  2V5I A;  2VFM A;  2VFP A;  1QA1 A;  1TYV A;  4KH3 A;  1QRC A;  1CLW A;  2XC1 A;  2IOU G;  1DAB A;  3SZE A; 
#chains in the Genus database with same CATH topology
 1GQ8 A;  3NB2 A;  3B90 A;  4W8T A;  1BN8 A;  4V02 C;  4XKW A;  1EE6 A;  1VBL A;  2W7Z A;  3SQV A;  4URR A;  1O8J A;  2NT6 A;  2QX3 A;  4XOP A;  4EW9 A;  3PSS A;  2INU A;  2G0Y A;  1O8L A;  1JRG A;  4OJP A;  4XLE A;  4XNF A;  4U49 A;  2VFN A;  1L1I A;  5C1C A;  2F3L A;  4OJ6 A;  2NT9 A;  1AIR A;  1X0C A;  2B0R A;  2XT2 A;  2VBM A;  4XLA A;  2V5I A;  3WWG A;  2QYU A;  4XOT A;  4YZQ A;  4YZA A;  3VSU A;  2XT4 A;  1QA1 A;  5JLV C;  4JRA C;  1OGO X;  4YEJ A;  4Z03 A;  2NST A;  4W8R A;  4MR0 A;  2X6X A;  3LMW A;  1KTW A;  3SZE A;  3VSV A;  4Z05 A;  1K8F A;  2BM4 A;  3FY3 A;  5JMC B;  1O88 A;  1NHC A;  2NTB A;  3PET A;  1WXR A;  1OFM A;  2QXZ A;  4NK8 A;  3UW0 A;  4W8Q A;  2VJI A;  4U4B A;  2O0W A;  2IQ7 A;  1TSP A;  3GQA A;  2Z8G A;  3SY2 A;  1TYU A;  3VST A;  2VFO A;  4XOR A;  1PE9 A;  3NAW A;  2O04 A;  1O8I A;  3GQ7 A;  2INV A;  4XLC A;  5AMV A;  3BH7 B;  3GQ9 A;  2PYH A;  4I84 A;  2ODL A;  2PEC A;  1OFL A;  1KCC A;  2J8I A;  4YCQ A;  4YC5 A;  4YFO A;  2UVF A;  3JX8 A;  1CZF A;  1EZG A;  1KCD A;  1O8F A;  3B8Y A;  3N90 A;  2NTP A;  4XM3 A;  1IDJ A;  1K4Z A;  4YDT A;  3RIQ A;  2QY1 A;  4XN0 A;  3TH0 A;  3EQO A;  1QA2 A;  2VFQ A;  3B4N A;  5C1E A;  2O1D A;  1O8E A;  1QRB A;  2X3H A;  2VBE A;  2BX6 A;  4OPW A;  3DU1 X;  4Z06 A;  3BH6 B;  4XLF A;  4OJL A;  1H80 A;  1HG8 A;  1O8G A;  1PXZ A;  2BSP A;  3GRH A;  2O6W A;  2VJJ A;  4HWV A;  3P4G A;  4OZZ A;  1OFD A;  2VFP A;  2XTX A;  1EA0 A;  3GQ8 A;  1RWR A;  2XTW A;  4XN3 A;  2VBK A;  1IDK A;  2EWE A;  2PYG A;  2O17 A;  2BM7 A;  4KH3 A;  2NTQ A;  4OJO A;  3ZSC A;  4MXN A;  4YEL A;  2X6W A;  2XC1 A;  1DBO A;  3KRG A;  4C2L A;  1OOC A;  4YZX A;  4XLH A;  1O8D A;  1DAB A;  1KQ5 A;  1OGM X;  3H09 A;  4XR6 A;  3SYJ A;  3ZPP A;  3T9G A;  2UVE A;  2X85 A;  1O8H A;  1LLZ A;  1QA3 A;  1QJV A;  3AK5 A;  4W8S A;  1TYX A;  4XKV A;  1K5C A;  3SUC A;  3JUR A;  3LYC A;  4OJ5 A;  4PMH A;  4XL9 A;  2QZA A;  2BM5 A;  1DBG A;  1TYW A;  2O0V A;  2NSP A;  2NZM A;  1IB4 A;  2BM6 A;  3LJY A;  1O8K A;  1O8M A;  2YUH A;  1LLW A;  2J8K A;  4OM9 A;  3N6Z A;  4XON A;  1RU4 A;  2X6Y A;  2XTY A;  1QQ1 A;  1HF2 A;  1PLU A;  3ML3 A;  4NK6 A;  4XQF A;  2VFM A;  1XG2 A;  3VMV A;  4OZY A;  3VMW A;  1BHE A;  1TYV A;  1QCX A;  1QRC A;  5DNS A;  1CLW A;  1JTA A;  1RMG A;  4XMY A;  1OFE A;  3EQN A;  4AVZ A;  4YEI A;  3PSZ A;  4YZ0 A;  1IA5 A;  2IOU G;  1WMR A;  1LM1 A; 
#chains in the Genus database with same CATH homology
 3JX8 A;  1K8F A;  2BM4 A;  3H09 A;  5JMC B;  3SYJ A;  3N90 A;  1QA3 A;  3PET A;  1WXR A;  1K4Z A;  3AK5 A;  1TYX A;  4V02 C;  3RIQ A;  4OJ5 A;  3LYC A;  3TH0 A;  2W7Z A;  2BM5 A;  1QA2 A;  1TYW A;  2VFQ A;  1QRB A;  2BM6 A;  2J8I A;  2BX6 A;  3LJY A;  4OPW A;  1TSP A;  2YUH A;  3BH6 B;  4OM9 A;  1TYU A;  2G0Y A;  3N6Z A;  2VFO A;  4OJP A;  4OJL A;  2VFN A;  1QQ1 A;  2F3L A;  4OJ6 A;  1HF2 A;  2B0R A;  3ML3 A;  3P4G A;  2V5I A;  2VFM A;  2VFP A;  3BH7 B;  1QA1 A;  1TYV A;  5JLV C;  2BM7 A;  4KH3 A;  1QRC A;  4JRA C;  4OJO A;  1CLW A;  2XC1 A;  2IOU G;  1DAB A;  1KQ5 A;  3SZE A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1TSPA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations