1DBOA

Crystal structure of chondroitinase b
Total Genus 179
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
179
sequence length
481
structure length
481
Chain Sequence
QVVASNETLYQVVKEVKPGGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKDGNRAIQAWKSHGPGLVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPGMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQGTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGSRHVIACNYFELSETIKSRGNAALYLNPGAMASEHALAFDMLIANNAFINVNGYAIHFNPLDERRKEYCAANRLKFETPHQLMLKGNLFFKDKPYVYPFFKDDYFIAGKNSWTGNVALGVEKGIPVNISANRSAYKPVKIKDIQPIEGIALDLNALISKGITGKPLSWDEVRPYWLKEMPGTYALTARLSADRAAKFKAVIKRNKEH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of chondroitinase B from Flavobacterium heparinum and its complex with a disaccharide product at 1.7 A resolution.
pubmed doi rcsb
molecule tags Lyase
molecule keywords CHONDROITINASE B
total genus 179
structure length 481
sequence length 481
ec nomenclature ec 4.2.2.19: Chondroitin B lyase.
pdb deposition date 1999-11-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14592 Chondroitinas_B Chondroitinase B
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1dboA00
1IB4A 1RMGA 1DBOA 2VJIA 3KRGA 3GQ9A 4W8TA 3WWGA 1O8JA 4XORA 4HWVA 3GQ8A 1K5CA 4C2LA 1KCCA 4OJ6A 1H80A 1O8KA 2EWEA 1HG8A 2QXZA 2ODLA 3FY3A 3GRHA 2O1DA 1O88A 1O8MA 4YZAA 3T9GA 1OFLA 2NTBA 1IA5A 4XOPA 4URRA 4MXNA 2NTPA 2X6XA 2QY1A 1RWRA 1PXZA 1X0CA 4YEJA 2VBEA 1IDKA 2NT6A 1VBLA 2X6WA 1JRGA 2VJJA 4XKVA 1KTWA 1OGMX 4AVZA 1QJVA 3VSVA 1NHCA 1GQ8A 4XR6A 1BN8A 1PE9A 4MR0A 2NSPA 3JURA 1WMRA 4XONA 4Z05A 2IQ7A 4Z03A 1BHEA 3ZPPA 3B4NA 4XM3A 4XMYA 1JTAA 2BSPA 1O8DA 3B8YA 3GQ7A 4YZXA 5AMVA 1EE6A 2VBKA 2QX3A 4YZ0A 4W8RA 1DBGA 2NZMA 2NT9A 2NTQA 2O17A 4YELA 4Z06A 3ZSCA 3SUCA 3EQNA 1O8GA 4OJLA 4XN0A 1QCXA 3GQAA 4W8SA 2UVFA 4OJ5A 4XL9A 2VBMA 4EW9A 2O0VA 1O8IA 2INUA 4U49A 4XLEA 4XOTA 1O8EA 2NSTA 1O8HA 4XLFA 4XNFA 4W8QA 5C1CA 4XN3A 3VMVA 2PYHA 3VSTA 1RU4A 4XKWA 1OGOX 4XLCA 4OZZA 1IDJA 3VMWA 1OFMA 2X6YA 4XLAA 4PMHA 1O8LA 3B90A 1XG2A 2O0WA 2Z8GA 2INVA 4XLHA 3UW0A 3EQOA 1PLUA 4NK8A 4XQFA 2PECA 4I84A 5C1EA 1KCDA 2O04A 4OJPA 2X3HA 1OOCA 4OZYA 1CZFA 4U4BA 2UVEA 4YZQA 3LMWA 1AIRA 3VSUA 2X85A 1O8FA 4NK6A 4OJOA 2PYGA
chains in the Genus database with same CATH superfamily
1LM1A 1IB4A 1RMGA 1TSPA 1DBOA 2VJIA 3KRGA 2IOUG 3GQ9A 4KH3A 4W8TA 3WWGA 1O8JA 4XORA 4HWVA 3GQ8A 3PETA 1K5CA 4C2LA 1KCCA 4YEIA 4OJ6A 1H80A 1O8KA 2EWEA 1HG8A 1TYVA 2QXZA 1OFEA 2ODLA 1HF2A 3PSSA 3FY3A 3GRHA 2XTYA 2O1DA 1O88A 1O8MA 2QZAA 2VFQA 4YZAA 3RIQA 2YUHA 3T9GA 1L1IA 1OFLA 2NTBA 1IA5A 3N6ZA 4XOPA 2W7ZA 4URRA 3ML3A 4MXNA 2NTPA 2X6XA 5JLVC 2J8IA 1EA0A 2QY1A 3LYCA 1RWRA 1TYXA 1PXZA 1X0CA 4YEJA 2VBEA 1IDKA 2NT6A 1VBLA 2X6WA 1JRGA 2VJJA 4XKVA 1KTWA 4V02C 3JX8A 1OGMX 4AVZA 1QJVA 3VSVA 1NHCA 2BM5A 1GQ8A 4XR6A 1EZGA 1K4ZA 3SQVA 2XTXA 2J8KA 1BN8A 2VFMA 1PE9A 4MR0A 2NSPA 3JURA 1WMRA 1OFDA 4OPWA 4XONA 4Z05A 1TYUA 2IQ7A 1BHEA 1TYWA 4Z03A 3B4NA 3DU1X 4XM3A 4XMYA 4YDTA 2VFOA 3ZPPA 1JTAA 2BSPA 1O8DA 3B8YA 3GQ7A 3P4GA 4YZXA 5AMVA 3BH6B 2BM4A 1EE6A 2VBKA 2QX3A 4YC5A 2B0RA 3H09A 2XTWA 3SYJA 4YZ0A 2XT2A 4W8RA 1DABA 1DBGA 5JMCB 2NZMA 2NT9A 2NTQA 2O17A 4YELA 4Z06A 3ZSCA 3SUCA 1QA2A 3SY2A 3EQNA 1O8GA 4OJLA 4XN0A 1QCXA 3GQAA 4W8SA 2G0YA 2UVFA 4OJ5A 4XL9A 2VBMA 1QRBA 1QQ1A 2BX6A 4EW9A 3PSZA 2O0VA 3SZEA 1O8IA 2INUA 4U49A 4XLEA 4XOTA 2BM7A 1KQ5A 1O8EA 2NSTA 1O8HA 4XLFA 4XNFA 4W8QA 3NAWA 4YCQA 5C1CA 4XN3A 5DNSA 3VMVA 2PYHA 3VSTA 2BM6A 3TH0A 1RU4A 4XKWA 4YFOA 2VFNA 1QA1A 1OGOX 4XLCA 1LLZA 4OZZA 1IDJA 1LLWA 1CLWA 1K8FA 3VMWA 1OFMA 2O6WA 2X6YA 4XLAA 3NB2A 2F3LA 4PMHA 1O8LA 3B90A 1XG2A 3AK5A 2O0WA 2XT4A 2Z8GA 2INVA 2XC1A 4JRAC 4XLHA 3UW0A 2QYUA 3EQOA 1PLUA 4NK8A 4XQFA 2PECA 4I84A 5C1EA 1KCDA 1WXRA 2O04A 4OM9A 1QRCA 2V5IA 3N90A 4OJPA 2X3HA 1OOCA 4OZYA 1CZFA 2VFPA 1QA3A 4U4BA 2UVEA 4YZQA 3LMWA 1AIRA 3BH7B 3VSUA 2X85A 1O8FA 4NK6A 3LJYA 4OJOA 2PYGA
chains in the Genus database with same CATH topology
1IB4A 1RMGA 1DBOA 2VJIA 3KRGA 3GQ9A 4W8TA 3WWGA 1O8JA 4XORA 4HWVA 3GQ8A 1K5CA 4C2LA 1KCCA 4OJ6A 1H80A 1O8KA 2EWEA 1HG8A 2QXZA 2ODLA 3FY3A 3GRHA 2O1DA 1O88A 1O8MA 4YZAA 3T9GA 1OFLA 2NTBA 1IA5A 4XOPA 4URRA 4MXNA 2NTPA 2X6XA 2QY1A 1RWRA 1PXZA 1X0CA 4YEJA 2VBEA 1IDKA 2NT6A 1VBLA 2X6WA 1JRGA 2VJJA 4XKVA 1KTWA 1OGMX 4AVZA 1QJVA 3VSVA 1NHCA 1GQ8A 4XR6A 1BN8A 1PE9A 4MR0A 2NSPA 3JURA 1WMRA 4XONA 4Z05A 2IQ7A 4Z03A 1BHEA 3ZPPA 3B4NA 4XM3A 4XMYA 1JTAA 2BSPA 1O8DA 3B8YA 3GQ7A 4YZXA 5AMVA 1EE6A 2VBKA 2QX3A 4YZ0A 4W8RA 1DBGA 2NZMA 2NT9A 2NTQA 2O17A 4YELA 4Z06A 3ZSCA 3SUCA 3EQNA 1O8GA 4OJLA 4XN0A 1QCXA 3GQAA 4W8SA 2UVFA 4OJ5A 4XL9A 2VBMA 4EW9A 2O0VA 1O8IA 2INUA 4U49A 4XLEA 4XOTA 1O8EA 2NSTA 1O8HA 4XLFA 4XNFA 4W8QA 5C1CA 4XN3A 3VMVA 2PYHA 3VSTA 1RU4A 4XKWA 1OGOX 4XLCA 4OZZA 1IDJA 3VMWA 1OFMA 2X6YA 4XLAA 4PMHA 1O8LA 3B90A 1XG2A 2O0WA 2Z8GA 2INVA 4XLHA 3UW0A 3EQOA 1PLUA 4NK8A 4XQFA 2PECA 4I84A 5C1EA 1KCDA 2O04A 4OJPA 2X3HA 1OOCA 4OZYA 1CZFA 4U4BA 2UVEA 4YZQA 3LMWA 1AIRA 3VSUA 2X85A 1O8FA 4NK6A 4OJOA 2PYGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IB4 A;  1RMG A;  1DBO A;  2VJI A;  3KRG A;  3GQ9 A;  4W8T A;  3WWG A;  1O8J A;  4XOR A;  4HWV A;  3GQ8 A;  1K5C A;  4C2L A;  1KCC A;  4OJ6 A;  1H80 A;  1O8K A;  2EWE A;  1HG8 A;  2QXZ A;  2ODL A;  3FY3 A;  3GRH A;  2O1D A;  1O88 A;  1O8M A;  4YZA A;  3T9G A;  1OFL A;  2NTB A;  1IA5 A;  4XOP A;  4URR A;  4MXN A;  2NTP A;  2X6X A;  2QY1 A;  1RWR A;  1PXZ A;  1X0C A;  4YEJ A;  2VBE A;  1IDK A;  2NT6 A;  1VBL A;  2X6W A;  1JRG A;  2VJJ A;  4XKV A;  1KTW A;  1OGM X;  4AVZ A;  1QJV A;  3VSV A;  1NHC A;  1GQ8 A;  4XR6 A;  1BN8 A;  1PE9 A;  4MR0 A;  2NSP A;  3JUR A;  1WMR A;  4XON A;  4Z05 A;  2IQ7 A;  4Z03 A;  1BHE A;  3ZPP A;  3B4N A;  4XM3 A;  4XMY A;  1JTA A;  2BSP A;  1O8D A;  3B8Y A;  3GQ7 A;  4YZX A;  5AMV A;  1EE6 A;  2VBK A;  2QX3 A;  4YZ0 A;  4W8R A;  1DBG A;  2NZM A;  2NT9 A;  2NTQ A;  2O17 A;  4YEL A;  4Z06 A;  3ZSC A;  3SUC A;  3EQN A;  1O8G A;  4OJL A;  4XN0 A;  1QCX A;  3GQA A;  4W8S A;  2UVF A;  4OJ5 A;  4XL9 A;  2VBM A;  4EW9 A;  2O0V A;  1O8I A;  2INU A;  4U49 A;  4XLE A;  4XOT A;  1O8E A;  2NST A;  1O8H A;  4XLF A;  4XNF A;  4W8Q A;  5C1C A;  4XN3 A;  3VMV A;  2PYH A;  3VST A;  1RU4 A;  4XKW A;  1OGO X;  4XLC A;  4OZZ A;  1IDJ A;  3VMW A;  1OFM A;  2X6Y A;  4XLA A;  4PMH A;  1O8L A;  3B90 A;  1XG2 A;  2O0W A;  2Z8G A;  2INV A;  4XLH A;  3UW0 A;  3EQO A;  1PLU A;  4NK8 A;  4XQF A;  2PEC A;  4I84 A;  5C1E A;  1KCD A;  2O04 A;  4OJP A;  2X3H A;  1OOC A;  4OZY A;  1CZF A;  4U4B A;  2UVE A;  4YZQ A;  3LMW A;  1AIR A;  3VSU A;  2X85 A;  1O8F A;  4NK6 A;  4OJO A;  2PYG A; 
#chains in the Genus database with same CATH topology
 1LM1 A;  1IB4 A;  1RMG A;  1TSP A;  1DBO A;  2VJI A;  3KRG A;  2IOU G;  3GQ9 A;  4KH3 A;  4W8T A;  3WWG A;  1O8J A;  4XOR A;  4HWV A;  3GQ8 A;  3PET A;  1K5C A;  4C2L A;  1KCC A;  4YEI A;  4OJ6 A;  1H80 A;  1O8K A;  2EWE A;  1HG8 A;  1TYV A;  2QXZ A;  1OFE A;  2ODL A;  1HF2 A;  3PSS A;  3FY3 A;  3GRH A;  2XTY A;  2O1D A;  1O88 A;  1O8M A;  2QZA A;  2VFQ A;  4YZA A;  3RIQ A;  2YUH A;  3T9G A;  1L1I A;  1OFL A;  2NTB A;  1IA5 A;  3N6Z A;  4XOP A;  2W7Z A;  4URR A;  3ML3 A;  4MXN A;  2NTP A;  2X6X A;  5JLV C;  2J8I A;  1EA0 A;  2QY1 A;  3LYC A;  1RWR A;  1TYX A;  1PXZ A;  1X0C A;  4YEJ A;  2VBE A;  1IDK A;  2NT6 A;  1VBL A;  2X6W A;  1JRG A;  2VJJ A;  4XKV A;  1KTW A;  4V02 C;  3JX8 A;  1OGM X;  4AVZ A;  1QJV A;  3VSV A;  1NHC A;  2BM5 A;  1GQ8 A;  4XR6 A;  1EZG A;  1K4Z A;  3SQV A;  2XTX A;  2J8K A;  1BN8 A;  2VFM A;  1PE9 A;  4MR0 A;  2NSP A;  3JUR A;  1WMR A;  1OFD A;  4OPW A;  4XON A;  4Z05 A;  1TYU A;  2IQ7 A;  1BHE A;  1TYW A;  4Z03 A;  3B4N A;  3DU1 X;  4XM3 A;  4XMY A;  4YDT A;  2VFO A;  3ZPP A;  1JTA A;  2BSP A;  1O8D A;  3B8Y A;  3GQ7 A;  3P4G A;  4YZX A;  5AMV A;  3BH6 B;  2BM4 A;  1EE6 A;  2VBK A;  2QX3 A;  4YC5 A;  2B0R A;  3H09 A;  2XTW A;  3SYJ A;  4YZ0 A;  2XT2 A;  4W8R A;  1DAB A;  1DBG A;  5JMC B;  2NZM A;  2NT9 A;  2NTQ A;  2O17 A;  4YEL A;  4Z06 A;  3ZSC A;  3SUC A;  1QA2 A;  3SY2 A;  3EQN A;  1O8G A;  4OJL A;  4XN0 A;  1QCX A;  3GQA A;  4W8S A;  2G0Y A;  2UVF A;  4OJ5 A;  4XL9 A;  2VBM A;  1QRB A;  1QQ1 A;  2BX6 A;  4EW9 A;  3PSZ A;  2O0V A;  3SZE A;  1O8I A;  2INU A;  4U49 A;  4XLE A;  4XOT A;  2BM7 A;  1KQ5 A;  1O8E A;  2NST A;  1O8H A;  4XLF A;  4XNF A;  4W8Q A;  3NAW A;  4YCQ A;  5C1C A;  4XN3 A;  5DNS A;  3VMV A;  2PYH A;  3VST A;  2BM6 A;  3TH0 A;  1RU4 A;  4XKW A;  4YFO A;  2VFN A;  1QA1 A;  1OGO X;  4XLC A;  1LLZ A;  4OZZ A;  1IDJ A;  1LLW A;  1CLW A;  1K8F A;  3VMW A;  1OFM A;  2O6W A;  2X6Y A;  4XLA A;  3NB2 A;  2F3L A;  4PMH A;  1O8L A;  3B90 A;  1XG2 A;  3AK5 A;  2O0W A;  2XT4 A;  2Z8G A;  2INV A;  2XC1 A;  4JRA C;  4XLH A;  3UW0 A;  2QYU A;  3EQO A;  1PLU A;  4NK8 A;  4XQF A;  2PEC A;  4I84 A;  5C1E A;  1KCD A;  1WXR A;  2O04 A;  4OM9 A;  1QRC A;  2V5I A;  3N90 A;  4OJP A;  2X3H A;  1OOC A;  4OZY A;  1CZF A;  2VFP A;  1QA3 A;  4U4B A;  2UVE A;  4YZQ A;  3LMW A;  1AIR A;  3BH7 B;  3VSU A;  2X85 A;  1O8F A;  4NK6 A;  3LJY A;  4OJO A;  2PYG A; 
#chains in the Genus database with same CATH homology
 1IB4 A;  1RMG A;  1DBO A;  2VJI A;  3KRG A;  3GQ9 A;  4W8T A;  3WWG A;  1O8J A;  4XOR A;  4HWV A;  3GQ8 A;  1K5C A;  4C2L A;  1KCC A;  4OJ6 A;  1H80 A;  1O8K A;  2EWE A;  1HG8 A;  2QXZ A;  2ODL A;  3FY3 A;  3GRH A;  2O1D A;  1O88 A;  1O8M A;  4YZA A;  3T9G A;  1OFL A;  2NTB A;  1IA5 A;  4XOP A;  4URR A;  4MXN A;  2NTP A;  2X6X A;  2QY1 A;  1RWR A;  1PXZ A;  1X0C A;  4YEJ A;  2VBE A;  1IDK A;  2NT6 A;  1VBL A;  2X6W A;  1JRG A;  2VJJ A;  4XKV A;  1KTW A;  1OGM X;  4AVZ A;  1QJV A;  3VSV A;  1NHC A;  1GQ8 A;  4XR6 A;  1BN8 A;  1PE9 A;  4MR0 A;  2NSP A;  3JUR A;  1WMR A;  4XON A;  4Z05 A;  2IQ7 A;  4Z03 A;  1BHE A;  3ZPP A;  3B4N A;  4XM3 A;  4XMY A;  1JTA A;  2BSP A;  1O8D A;  3B8Y A;  3GQ7 A;  4YZX A;  5AMV A;  1EE6 A;  2VBK A;  2QX3 A;  4YZ0 A;  4W8R A;  1DBG A;  2NZM A;  2NT9 A;  2NTQ A;  2O17 A;  4YEL A;  4Z06 A;  3ZSC A;  3SUC A;  3EQN A;  1O8G A;  4OJL A;  4XN0 A;  1QCX A;  3GQA A;  4W8S A;  2UVF A;  4OJ5 A;  4XL9 A;  2VBM A;  4EW9 A;  2O0V A;  1O8I A;  2INU A;  4U49 A;  4XLE A;  4XOT A;  1O8E A;  2NST A;  1O8H A;  4XLF A;  4XNF A;  4W8Q A;  5C1C A;  4XN3 A;  3VMV A;  2PYH A;  3VST A;  1RU4 A;  4XKW A;  1OGO X;  4XLC A;  4OZZ A;  1IDJ A;  3VMW A;  1OFM A;  2X6Y A;  4XLA A;  4PMH A;  1O8L A;  3B90 A;  1XG2 A;  2O0W A;  2Z8G A;  2INV A;  4XLH A;  3UW0 A;  3EQO A;  1PLU A;  4NK8 A;  4XQF A;  2PEC A;  4I84 A;  5C1E A;  1KCD A;  2O04 A;  4OJP A;  2X3H A;  1OOC A;  4OZY A;  1CZF A;  4U4B A;  2UVE A;  4YZQ A;  3LMW A;  1AIR A;  3VSU A;  2X85 A;  1O8F A;  4NK6 A;  4OJO A;  2PYG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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