1IB4A

Crystal structure of polygalacturonase from aspergillus aculeatus at ph4.5
Total Genus 126

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
126
sequence length
339
structure length
339
Chain Sequence
ATTCTFSGSNGASSASKSKTSCSTIVLSNVAVPSGTTLDLTKLNDGTHVIFSGETTFGYKEWSGPLISVSGSDLTITGASGHSINGDGSRWWDGEGGNGGKTKPKFFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSGENIYFSGGYCSGGHGLSIGSVGGRSDNTVKNVTFVDSTIINSDNGVRIKTNIDTTGSVSDVTYKDITLTSIAKYGIVVQQNYGDTSSTPTTGVPITDFVLDNVHGSVVSSGTNILISCGSGSCSDWTWTDVSVSGGKTSSKCTNVPSGASC
5010015020025030030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV1 (19-22)TVIII1 (22-25)AH1 (10-19)S3 (38-40)TII2 (40-43)TII3 (44-47)S4 (48-52)S2 (24-32)TII1 (33-36)TVIII2 (65-68)S6 (67-72)S7 (75-78)TII4 (79-82)3H1 (88-90)S5 (54-57)S10 (121-123)TIV4 (93-96)TIV13 (151-154)TII'1 (95-98)TIV14 (155-158)S9 (107-118)S11 (130-141)TIV8 (125-128)TVIII3 (159-162)S13 (161-172)TIV11 (140-143)S14 (175-177)3H2 (148-150)S12 (144-146)TIV12 (150-153)TVIII4 (181-184)S16 (188-194)TIV15 (171-174)S17 (197-199)S18 (204-209)TVIII6 (230-233)S21 (245-259)TVIII5 (212-215)S20 (232-239)S19 (216-228)TIV16 (227-230)TIV20 (259-262)S22 (262-270)TII5 (239-242)TVIII8 (279-282)TI2 (296-299)S24 (300-305)TII6 (269-272)TI1 (272-275)S23 (283-295)TII7 (307-310)TIV26 (327-330)TIV27 (330-333)TII8 (334-337)S8 (83-85)S15 (183-185)TIV3 (71-74)S1 (3-8)S25 (311-322)Updating...
connected with : NaN
molecule tags Hydrolase
publication title The X-ray structure of Aspergillus aculeatus polygalacturonase and a modeled structure of the polygalacturonase-octagalacturonate complex.
pubmed doi rcsb
molecule keywords POLYGALACTURONASE
total genus 126
structure length 339
sequence length 339
chains with identical sequence B
ec nomenclature ec 3.2.1.15: Endo-polygalacturonase.
pdb deposition date 2001-03-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00295 Glyco_hydro_28 Glycosyl hydrolases family 28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1ib4A00
4XMYA 1O8LA 3GQ7A 1X0CA 1O8KA 4OJOA 4XORA 1DBOA 2O1DA 2O0WA 1O8GA 2UVEA 3FY3A 4Z05A 2NTBA 1IA5A 1QCXA 2X6WA 2VJIA 1O8IA 2NT9A 2VBMA 3B4NA 4YZAA 2O17A 4Z06A 3GQAA 1JRGA 1NHCA 1OFLA 4OJLA 4PMHA 4YZQA 3B8YA 4W8QA 3WWGA 1BN8A 2VJJA 2VBEA 4AVZA 1CZFA 2NSPA 5C1CA 1OGOX 4U4BA 1KCCA 1JTAA 1KTWA 5AMVA 2INUA 4NK8A 1KCDA 2NT6A 3ZPPA 2PYGA 1O8MA 1OGMX 4OZYA 1DBGA 2UVFA 4OJ6A 3UW0A 1H80A 2VBKA 4XNFA 3VMWA 1IDJA 4XLCA 1PE9A 4EW9A 4XN0A 3EQNA 1OOCA 4XQFA 3T9GA 1AIRA 4XR6A 1O8HA 1O8FA 1IB4A 1QJVA 2X6XA 2NSTA 2INVA 3GQ8A 3VMVA 4YZXA 2O0VA 1O8DA 4I84A 4MR0A 1O88A 4URRA 2EWEA 4W8SA 4XOPA 2BSPA 1OFMA 3GRHA 2X3HA 1IDKA 1HG8A 1BHEA 4C2LA 1RMGA 2NTQA 3ZSCA 2Z8GA 2NTPA 3EQOA 2X85A 4YELA 3B90A 4MXNA 4YEJA 1PXZA 3VSTA 3SUCA 4XN3A 1EE6A 4XKWA 4OJ5A 1RWRA 4XLHA 4XOTA 1O8EA 5C1EA 4OZZA 1GQ8A 2IQ7A 3LMWA 3GQ9A 2ODLA 2O04A 1RU4A 2X6YA 4XLFA 4U49A 1XG2A 1WMRA 2NZMA 4W8TA 3VSUA 4XONA 1O8JA 4XM3A 4OJPA 2QY1A 4YZ0A 2QXZA 4HWVA 4NK6A 1VBLA 1PLUA 1K5CA 3KRGA 2PECA 4XKVA 4XLAA 4XLEA 4W8RA 2QX3A 3VSVA 2PYHA 4XL9A 4Z03A 3JURA
chains in the Genus database with same CATH superfamily
1QRBA 1O8LA 3GQ7A 1X0CA 1O8KA 4OJOA 4XMYA 1K8FA 2VFQA 4XORA 1DBOA 2O1DA 2O0WA 3DU1X 1TYXA 4V02C 1O8GA 2UVEA 3FY3A 2XC1A 2NTBA 4Z05A 3BH7B 1TSPA 1IA5A 1QCXA 4YDTA 2X6WA 1KQ5A 2VJIA 3JX8A 1O8IA 2NT9A 2VBMA 3B4NA 1EA0A 4YZAA 1EZGA 2O17A 4YCQA 2VFOA 3GQAA 3LJYA 1JRGA 1QRCA 4Z06A 3SZEA 1NHCA 1HF2A 1OFLA 3BH6B 1QQ1A 4OJLA 5DNSA 4PMHA 3N6ZA 4YZQA 3B8YA 4W8QA 1LM1A 3WWGA 1BN8A 3NAWA 2VJJA 2IOUG 1QA2A 2VBEA 4AVZA 2V5IA 1CZFA 2NSPA 4YC5A 1LLZA 5C1CA 1OGOX 4U4BA 1KCCA 1JTAA 1KTWA 2YUHA 2INUA 4NK8A 5AMVA 2NT6A 1KCDA 3AK5A 3LYCA 2PYGA 3ZPPA 2J8KA 1O8MA 1OGMX 2B0RA 1DBGA 4OZYA 1WXRA 2UVFA 3PETA 4YEIA 2BM7A 4OJ6A 2BX6A 3UW0A 1H80A 3PSSA 2QZAA 1QA3A 2VBKA 4XNFA 3VMWA 1IDJA 1TYWA 4XLCA 3RIQA 2XTYA 1PE9A 4EW9A 4XN0A 1TYVA 3EQNA 1OOCA 2VFMA 4XQFA 1TYUA 2VFPA 5JMCB 3T9GA 1AIRA 4XR6A 4KH3A 1O8HA 1O8FA 3ML3A 1QJVA 2X6XA 5JLVC 1IB4A 2NSTA 2INVA 3GQ8A 3VMVA 4YZXA 2O0VA 1O8DA 4I84A 4MR0A 1O88A 1L1IA 4URRA 1OFEA 2EWEA 3N90A 4W8SA 4XOPA 2BSPA 1OFMA 3PSZA 3GRHA 2X3HA 1IDKA 4OM9A 1HG8A 1BHEA 4C2LA 1RMGA 2NTQA 3SY2A 3ZSCA 2O6WA 2Z8GA 2NTPA 2XT4A 3EQOA 2X85A 4YELA 3B90A 4MXNA 4YEJA 1K4ZA 2J8IA 1PXZA 3NB2A 3VSTA 2XTXA 4XN3A 3SUCA 1EE6A 4XKWA 4OJ5A 1RWRA 4XLHA 4XOTA 1O8EA 4YFOA 5C1EA 3SYJA 4OZZA 1GQ8A 2IQ7A 3LMWA 1LLWA 3GQ9A 2BM4A 2ODLA 2O04A 1RU4A 2F3LA 2X6YA 4OPWA 4XLFA 4U49A 1XG2A 2XTWA 1WMRA 2NZMA 4W8TA 3VSUA 1CLWA 2QYUA 3SQVA 1OFDA 4XONA 1O8JA 4XM3A 4OJPA 2QY1A 3P4GA 4YZ0A 2QXZA 2BM6A 4HWVA 4NK6A 1VBLA 1PLUA 4JRAC 1DABA 1K5CA 3KRGA 2G0YA 2PECA 4XKVA 4XLAA 1QA1A 3H09A 2XT2A 2W7ZA 2VFNA 4XLEA 2BM5A 3TH0A 4W8RA 2QX3A 3VSVA 2PYHA 4XL9A 4Z03A 3JURA
chains in the Genus database with same CATH topology
4XMYA 1O8LA 3GQ7A 1X0CA 1O8KA 4OJOA 4XORA 1DBOA 2O1DA 2O0WA 1O8GA 2UVEA 3FY3A 4Z05A 2NTBA 1IA5A 1QCXA 2X6WA 2VJIA 1O8IA 2NT9A 2VBMA 3B4NA 4YZAA 2O17A 4Z06A 3GQAA 1JRGA 1NHCA 1OFLA 4OJLA 4PMHA 4YZQA 3B8YA 4W8QA 3WWGA 1BN8A 2VJJA 2VBEA 4AVZA 1CZFA 2NSPA 5C1CA 1OGOX 4U4BA 1KCCA 1JTAA 1KTWA 5AMVA 2INUA 4NK8A 1KCDA 2NT6A 3ZPPA 2PYGA 1O8MA 1OGMX 4OZYA 1DBGA 2UVFA 4OJ6A 3UW0A 1H80A 2VBKA 4XNFA 3VMWA 1IDJA 4XLCA 1PE9A 4EW9A 4XN0A 3EQNA 1OOCA 4XQFA 3T9GA 1AIRA 4XR6A 1O8HA 1O8FA 1IB4A 1QJVA 2X6XA 2NSTA 2INVA 3GQ8A 3VMVA 4YZXA 2O0VA 1O8DA 4I84A 4MR0A 1O88A 4URRA 2EWEA 4W8SA 4XOPA 2BSPA 1OFMA 3GRHA 2X3HA 1IDKA 1HG8A 1BHEA 4C2LA 1RMGA 2NTQA 3ZSCA 2Z8GA 2NTPA 3EQOA 2X85A 4YELA 3B90A 4MXNA 4YEJA 1PXZA 3VSTA 3SUCA 4XN3A 1EE6A 4XKWA 4OJ5A 1RWRA 4XLHA 4XOTA 1O8EA 5C1EA 4OZZA 1GQ8A 2IQ7A 3LMWA 3GQ9A 2ODLA 2O04A 1RU4A 2X6YA 4XLFA 4U49A 1XG2A 1WMRA 2NZMA 4W8TA 3VSUA 4XONA 1O8JA 4XM3A 4OJPA 2QY1A 4YZ0A 2QXZA 4HWVA 4NK6A 1VBLA 1PLUA 1K5CA 3KRGA 2PECA 4XKVA 4XLAA 4XLEA 4W8RA 2QX3A 3VSVA 2PYHA 4XL9A 4Z03A 3JURA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XMY A;  1O8L A;  3GQ7 A;  1X0C A;  1O8K A;  4OJO A;  4XOR A;  1DBO A;  2O1D A;  2O0W A;  1O8G A;  2UVE A;  3FY3 A;  4Z05 A;  2NTB A;  1IA5 A;  1QCX A;  2X6W A;  2VJI A;  1O8I A;  2NT9 A;  2VBM A;  3B4N A;  4YZA A;  2O17 A;  4Z06 A;  3GQA A;  1JRG A;  1NHC A;  1OFL A;  4OJL A;  4PMH A;  4YZQ A;  3B8Y A;  4W8Q A;  3WWG A;  1BN8 A;  2VJJ A;  2VBE A;  4AVZ A;  1CZF A;  2NSP A;  5C1C A;  1OGO X;  4U4B A;  1KCC A;  1JTA A;  1KTW A;  5AMV A;  2INU A;  4NK8 A;  1KCD A;  2NT6 A;  3ZPP A;  2PYG A;  1O8M A;  1OGM X;  4OZY A;  1DBG A;  2UVF A;  4OJ6 A;  3UW0 A;  1H80 A;  2VBK A;  4XNF A;  3VMW A;  1IDJ A;  4XLC A;  1PE9 A;  4EW9 A;  4XN0 A;  3EQN A;  1OOC A;  4XQF A;  3T9G A;  1AIR A;  4XR6 A;  1O8H A;  1O8F A;  1IB4 A;  1QJV A;  2X6X A;  2NST A;  2INV A;  3GQ8 A;  3VMV A;  4YZX A;  2O0V A;  1O8D A;  4I84 A;  4MR0 A;  1O88 A;  4URR A;  2EWE A;  4W8S A;  4XOP A;  2BSP A;  1OFM A;  3GRH A;  2X3H A;  1IDK A;  1HG8 A;  1BHE A;  4C2L A;  1RMG A;  2NTQ A;  3ZSC A;  2Z8G A;  2NTP A;  3EQO A;  2X85 A;  4YEL A;  3B90 A;  4MXN A;  4YEJ A;  1PXZ A;  3VST A;  3SUC A;  4XN3 A;  1EE6 A;  4XKW A;  4OJ5 A;  1RWR A;  4XLH A;  4XOT A;  1O8E A;  5C1E A;  4OZZ A;  1GQ8 A;  2IQ7 A;  3LMW A;  3GQ9 A;  2ODL A;  2O04 A;  1RU4 A;  2X6Y A;  4XLF A;  4U49 A;  1XG2 A;  1WMR A;  2NZM A;  4W8T A;  3VSU A;  4XON A;  1O8J A;  4XM3 A;  4OJP A;  2QY1 A;  4YZ0 A;  2QXZ A;  4HWV A;  4NK6 A;  1VBL A;  1PLU A;  1K5C A;  3KRG A;  2PEC A;  4XKV A;  4XLA A;  4XLE A;  4W8R A;  2QX3 A;  3VSV A;  2PYH A;  4XL9 A;  4Z03 A;  3JUR A; 
#chains in the Genus database with same CATH topology
 1QRB A;  1O8L A;  3GQ7 A;  1X0C A;  1O8K A;  4OJO A;  4XMY A;  1K8F A;  2VFQ A;  4XOR A;  1DBO A;  2O1D A;  2O0W A;  3DU1 X;  1TYX A;  4V02 C;  1O8G A;  2UVE A;  3FY3 A;  2XC1 A;  2NTB A;  4Z05 A;  3BH7 B;  1TSP A;  1IA5 A;  1QCX A;  4YDT A;  2X6W A;  1KQ5 A;  2VJI A;  3JX8 A;  1O8I A;  2NT9 A;  2VBM A;  3B4N A;  1EA0 A;  4YZA A;  1EZG A;  2O17 A;  4YCQ A;  2VFO A;  3GQA A;  3LJY A;  1JRG A;  1QRC A;  4Z06 A;  3SZE A;  1NHC A;  1HF2 A;  1OFL A;  3BH6 B;  1QQ1 A;  4OJL A;  5DNS A;  4PMH A;  3N6Z A;  4YZQ A;  3B8Y A;  4W8Q A;  1LM1 A;  3WWG A;  1BN8 A;  3NAW A;  2VJJ A;  2IOU G;  1QA2 A;  2VBE A;  4AVZ A;  2V5I A;  1CZF A;  2NSP A;  4YC5 A;  1LLZ A;  5C1C A;  1OGO X;  4U4B A;  1KCC A;  1JTA A;  1KTW A;  2YUH A;  2INU A;  4NK8 A;  5AMV A;  2NT6 A;  1KCD A;  3AK5 A;  3LYC A;  2PYG A;  3ZPP A;  2J8K A;  1O8M A;  1OGM X;  2B0R A;  1DBG A;  4OZY A;  1WXR A;  2UVF A;  3PET A;  4YEI A;  2BM7 A;  4OJ6 A;  2BX6 A;  3UW0 A;  1H80 A;  3PSS A;  2QZA A;  1QA3 A;  2VBK A;  4XNF A;  3VMW A;  1IDJ A;  1TYW A;  4XLC A;  3RIQ A;  2XTY A;  1PE9 A;  4EW9 A;  4XN0 A;  1TYV A;  3EQN A;  1OOC A;  2VFM A;  4XQF A;  1TYU A;  2VFP A;  5JMC B;  3T9G A;  1AIR A;  4XR6 A;  4KH3 A;  1O8H A;  1O8F A;  3ML3 A;  1QJV A;  2X6X A;  5JLV C;  1IB4 A;  2NST A;  2INV A;  3GQ8 A;  3VMV A;  4YZX A;  2O0V A;  1O8D A;  4I84 A;  4MR0 A;  1O88 A;  1L1I A;  4URR A;  1OFE A;  2EWE A;  3N90 A;  4W8S A;  4XOP A;  2BSP A;  1OFM A;  3PSZ A;  3GRH A;  2X3H A;  1IDK A;  4OM9 A;  1HG8 A;  1BHE A;  4C2L A;  1RMG A;  2NTQ A;  3SY2 A;  3ZSC A;  2O6W A;  2Z8G A;  2NTP A;  2XT4 A;  3EQO A;  2X85 A;  4YEL A;  3B90 A;  4MXN A;  4YEJ A;  1K4Z A;  2J8I A;  1PXZ A;  3NB2 A;  3VST A;  2XTX A;  4XN3 A;  3SUC A;  1EE6 A;  4XKW A;  4OJ5 A;  1RWR A;  4XLH A;  4XOT A;  1O8E A;  4YFO A;  5C1E A;  3SYJ A;  4OZZ A;  1GQ8 A;  2IQ7 A;  3LMW A;  1LLW A;  3GQ9 A;  2BM4 A;  2ODL A;  2O04 A;  1RU4 A;  2F3L A;  2X6Y A;  4OPW A;  4XLF A;  4U49 A;  1XG2 A;  2XTW A;  1WMR A;  2NZM A;  4W8T A;  3VSU A;  1CLW A;  2QYU A;  3SQV A;  1OFD A;  4XON A;  1O8J A;  4XM3 A;  4OJP A;  2QY1 A;  3P4G A;  4YZ0 A;  2QXZ A;  2BM6 A;  4HWV A;  4NK6 A;  1VBL A;  1PLU A;  4JRA C;  1DAB A;  1K5C A;  3KRG A;  2G0Y A;  2PEC A;  4XKV A;  4XLA A;  1QA1 A;  3H09 A;  2XT2 A;  2W7Z A;  2VFN A;  4XLE A;  2BM5 A;  3TH0 A;  4W8R A;  2QX3 A;  3VSV A;  2PYH A;  4XL9 A;  4Z03 A;  3JUR A; 
#chains in the Genus database with same CATH homology
 4XMY A;  1O8L A;  3GQ7 A;  1X0C A;  1O8K A;  4OJO A;  4XOR A;  1DBO A;  2O1D A;  2O0W A;  1O8G A;  2UVE A;  3FY3 A;  4Z05 A;  2NTB A;  1IA5 A;  1QCX A;  2X6W A;  2VJI A;  1O8I A;  2NT9 A;  2VBM A;  3B4N A;  4YZA A;  2O17 A;  4Z06 A;  3GQA A;  1JRG A;  1NHC A;  1OFL A;  4OJL A;  4PMH A;  4YZQ A;  3B8Y A;  4W8Q A;  3WWG A;  1BN8 A;  2VJJ A;  2VBE A;  4AVZ A;  1CZF A;  2NSP A;  5C1C A;  1OGO X;  4U4B A;  1KCC A;  1JTA A;  1KTW A;  5AMV A;  2INU A;  4NK8 A;  1KCD A;  2NT6 A;  3ZPP A;  2PYG A;  1O8M A;  1OGM X;  4OZY A;  1DBG A;  2UVF A;  4OJ6 A;  3UW0 A;  1H80 A;  2VBK A;  4XNF A;  3VMW A;  1IDJ A;  4XLC A;  1PE9 A;  4EW9 A;  4XN0 A;  3EQN A;  1OOC A;  4XQF A;  3T9G A;  1AIR A;  4XR6 A;  1O8H A;  1O8F A;  1IB4 A;  1QJV A;  2X6X A;  2NST A;  2INV A;  3GQ8 A;  3VMV A;  4YZX A;  2O0V A;  1O8D A;  4I84 A;  4MR0 A;  1O88 A;  4URR A;  2EWE A;  4W8S A;  4XOP A;  2BSP A;  1OFM A;  3GRH A;  2X3H A;  1IDK A;  1HG8 A;  1BHE A;  4C2L A;  1RMG A;  2NTQ A;  3ZSC A;  2Z8G A;  2NTP A;  3EQO A;  2X85 A;  4YEL A;  3B90 A;  4MXN A;  4YEJ A;  1PXZ A;  3VST A;  3SUC A;  4XN3 A;  1EE6 A;  4XKW A;  4OJ5 A;  1RWR A;  4XLH A;  4XOT A;  1O8E A;  5C1E A;  4OZZ A;  1GQ8 A;  2IQ7 A;  3LMW A;  3GQ9 A;  2ODL A;  2O04 A;  1RU4 A;  2X6Y A;  4XLF A;  4U49 A;  1XG2 A;  1WMR A;  2NZM A;  4W8T A;  3VSU A;  4XON A;  1O8J A;  4XM3 A;  4OJP A;  2QY1 A;  4YZ0 A;  2QXZ A;  4HWV A;  4NK6 A;  1VBL A;  1PLU A;  1K5C A;  3KRG A;  2PEC A;  4XKV A;  4XLA A;  4XLE A;  4W8R A;  2QX3 A;  3VSV A;  2PYH A;  4XL9 A;  4Z03 A;  3JUR A; 
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