2BM4A

The structure of mfpa (rv3361c, c2 crystal form). the pentapeptide repeat protein from mycobacterium tuberculosis folds as a right- handed quadrilateral beta-helix.
Total Genus 78
2040608010012014016001020304050607080
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
180
structure length
180
Chain Sequence
QQWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (3-5)TII2 (19-22)TIV1 (4-7)TIV3 (24-27)S2 (8-10)TIV4 (29-32)TIV2 (9-12)TII1 (14-17)EMPTYS3 (23-25)TII4 (39-42)TIV5 (44-47)S4 (28-30)TIV6 (49-52)TII3 (34-37)TIV7 (54-57)S5 (43-45)TII5 (59-62)S8 (63-68)S6 (48-50)S7 (53-55)TII6 (69-72)TIV9 (74-77)TIV10 (79-82)S9 (73-75)TII7 (89-92)TII8 (94-97)TII9 (99-102)S10 (83-88)TII11 (109-112)TII10 (104-107)TII12 (114-117)TII13 (119-122)TII14 (124-127)TII17 (139-142)TII15 (129-132)TII16 (134-137)TII18 (144-147)AH2 (166-176)AH1 (151-155)TII19 (159-162)Updating...
connected with : NaN
molecule tags Pentapeptide repeat protein
source organism Mycobacterium tuberculosis
publication title A Fluroquinolone Resistance Protein from Mycobacterium Tuberculosis that Mimics DNA
pubmed doi rcsb
molecule keywords PENTAPEPTIDE REPEAT FAMILY PROTEIN
total genus 78
structure length 180
sequence length 180
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-03-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13599 Pentapeptide_4 Pentapeptide repeats (9 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.100 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2bm4A00
3N90A 2J8IA 2BM5A 2G0YA 2W7ZA 5JLVC 5JMCB 2F3LA 4JRAC 2BM6A 2BM7A 2BM4A
chains in the Genus database with same CATH superfamily
2B0RA 4HWVA 4YZQA 3H09A 4YZXA 1PE9A 4Z03A 4KH3A 2F3LA 1LLWA 2Z8GA 1RWRA 3VSTA 3ZSCA 1O8FA 4MXNA 4OM9A 2X6XA 2VBEA 4NK6A 3ZPPA 2O04A 1OOCA 2QY1A 1QCXA 1IA5A 2XTXA 2VJIA 4XR6A 1CZFA 3NAWA 4XLFA 2VFQA 3JX8A 1HF2A 3VMVA 3EQOA 1GQ8A 4XOTA 5AMVA 3RIQA 4U4BA 1LM1A 1JRGA 4XORA 3VSUA 5DNSA 4JRAC 1O8MA 1TYUA 2BM7A 5JMCB 3PSZA 1TSPA 2NSTA 1DBOA 1OFMA 3PETA 4XM3A 2PECA 2XC1A 2BM5A 1EE6A 4URRA 1JTAA 1QA1A 1O8HA 2QYUA 1OGOX 2BM4A 1K8FA 2VFMA 1KCDA 4YZ0A 1IDJA 4OZZA 3SQVA 3KRGA 4MR0A 4YEJA 3B8YA 4XKWA 1PLUA 1IDKA 4U49A 5C1EA 2BX6A 1QA3A 2VFPA 3P4GA 1H80A 3EQNA 2INUA 4OJ5A 4XQFA 2PYGA 1QQ1A 4XLEA 4YZAA 3LYCA 4NK8A 3WWGA 2NTQA 2O0VA 3JURA 2QZAA 2IQ7A 1HG8A 4EW9A 2YUHA 3SYJA 2NSPA 2XTWA 2NT9A 4YELA 2X6WA 1LLZA 5JLVC 3AK5A 3VMWA 4W8QA 3LJYA 1O8JA 1KCCA 2NT6A 3GRHA 4XNFA 1K5CA 2X3HA 2X6YA 1EA0A 3UW0A 2VFOA 1WXRA 4OJLA 4YCQA 1L1IA 4YC5A 4XN3A 2VBKA 2O17A 3NB2A 3BH6B 1O88A 2QXZA 3GQ9A 5C1CA 1O8EA 2O6WA 1DBGA 2G0YA 2IOUG 2W7ZA 4XLCA 4V02C 3FY3A 1OFLA 1WMRA 2O0WA 2XT2A 4W8SA 2X85A 2ODLA 4XL9A 2NTPA 1KQ5A 3LMWA 1O8KA 1AIRA 3GQ8A 3N6ZA 1VBLA 3GQ7A 3SUCA 4OPWA 1PXZA 2QX3A 3ML3A 4YEIA 1O8GA 1O8LA 1TYXA 2XT4A 2UVEA 4XMYA 2NZMA 2VBMA 4PMHA 1RMGA 2VFNA 1O8IA 1X0CA 1IB4A 1TYWA 2PYHA 2O1DA 4YDTA 2BSPA 2J8IA 4XN0A 4W8TA 4XOPA 3SZEA 1QJVA 3DU1X 1OFDA 3T9GA 4Z06A 2EWEA 4OJPA 1BHEA 4YFOA 2INVA 1QRBA 4OZYA 4Z05A 1NHCA 4XLHA 1DABA 3B90A 4XONA 4AVZA 3BH7B 2V5IA 3SY2A 3B4NA 1RU4A 1K4ZA 1OGMX 1OFEA 3PSSA 4C2LA 2VJJA 4W8RA 1BN8A 2UVFA 4OJOA 2XTYA 1QA2A 3GQAA 2NTBA 4XLAA 4XKVA 1O8DA 4OJ6A 1KTWA 4I84A 3N90A 1TYVA 1EZGA 1CLWA 1XG2A 2J8KA 3VSVA 3TH0A 2BM6A 1QRCA
chains in the Genus database with same CATH topology
2VFMA 2B0RA 2VFOA 1WXRA 3H09A 4OJLA 2J8IA 3SZEA 1TYWA 4KH3A 2F3LA 3BH6B 4OJPA 2BX6A 1QRBA 4OM9A 1QA3A 2VFPA 3P4GA 1DABA 4OJ5A 2G0YA 2IOUG 1QQ1A 2W7ZA 2VFQA 3BH7B 3JX8A 2V5IA 1HF2A 3LYCA 4V02C 1K4ZA 2YUHA 3RIQA 3SYJA 1KQ5A 4OJOA 5JLVC 3AK5A 3N6ZA 1QA2A 4JRAC 5JMCB 1TYUA 2BM7A 4OPWA 3ML3A 4OJ6A 1TSPA 3LJYA 1TYXA 3PETA 3N90A 2XC1A 2BM5A 1TYVA 1CLWA 2VFNA 1QA1A 3TH0A 2BM6A 1QRCA 2BM4A 1K8FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3N90 A;  2J8I A;  2BM5 A;  2G0Y A;  2W7Z A;  5JLV C;  5JMC B;  2F3L A;  4JRA C;  2BM6 A;  2BM7 A;  2BM4 A; 
#chains in the Genus database with same CATH topology
 2B0R A;  4HWV A;  4YZQ A;  3H09 A;  4YZX A;  1PE9 A;  4Z03 A;  4KH3 A;  2F3L A;  1LLW A;  2Z8G A;  1RWR A;  3VST A;  3ZSC A;  1O8F A;  4MXN A;  4OM9 A;  2X6X A;  2VBE A;  4NK6 A;  3ZPP A;  2O04 A;  1OOC A;  2QY1 A;  1QCX A;  1IA5 A;  2XTX A;  2VJI A;  4XR6 A;  1CZF A;  3NAW A;  4XLF A;  2VFQ A;  3JX8 A;  1HF2 A;  3VMV A;  3EQO A;  1GQ8 A;  4XOT A;  5AMV A;  3RIQ A;  4U4B A;  1LM1 A;  1JRG A;  4XOR A;  3VSU A;  5DNS A;  4JRA C;  1O8M A;  1TYU A;  2BM7 A;  5JMC B;  3PSZ A;  1TSP A;  2NST A;  1DBO A;  1OFM A;  3PET A;  4XM3 A;  2PEC A;  2XC1 A;  2BM5 A;  1EE6 A;  4URR A;  1JTA A;  1QA1 A;  1O8H A;  2QYU A;  1OGO X;  2BM4 A;  1K8F A;  2VFM A;  1KCD A;  4YZ0 A;  1IDJ A;  4OZZ A;  3SQV A;  3KRG A;  4MR0 A;  4YEJ A;  3B8Y A;  4XKW A;  1PLU A;  1IDK A;  4U49 A;  5C1E A;  2BX6 A;  1QA3 A;  2VFP A;  3P4G A;  1H80 A;  3EQN A;  2INU A;  4OJ5 A;  4XQF A;  2PYG A;  1QQ1 A;  4XLE A;  4YZA A;  3LYC A;  4NK8 A;  3WWG A;  2NTQ A;  2O0V A;  3JUR A;  2QZA A;  2IQ7 A;  1HG8 A;  4EW9 A;  2YUH A;  3SYJ A;  2NSP A;  2XTW A;  2NT9 A;  4YEL A;  2X6W A;  1LLZ A;  5JLV C;  3AK5 A;  3VMW A;  4W8Q A;  3LJY A;  1O8J A;  1KCC A;  2NT6 A;  3GRH A;  4XNF A;  1K5C A;  2X3H A;  2X6Y A;  1EA0 A;  3UW0 A;  2VFO A;  1WXR A;  4OJL A;  4YCQ A;  1L1I A;  4YC5 A;  4XN3 A;  2VBK A;  2O17 A;  3NB2 A;  3BH6 B;  1O88 A;  2QXZ A;  3GQ9 A;  5C1C A;  1O8E A;  2O6W A;  1DBG A;  2G0Y A;  2IOU G;  2W7Z A;  4XLC A;  4V02 C;  3FY3 A;  1OFL A;  1WMR A;  2O0W A;  2XT2 A;  4W8S A;  2X85 A;  2ODL A;  4XL9 A;  2NTP A;  1KQ5 A;  3LMW A;  1O8K A;  1AIR A;  3GQ8 A;  3N6Z A;  1VBL A;  3GQ7 A;  3SUC A;  4OPW A;  1PXZ A;  2QX3 A;  3ML3 A;  4YEI A;  1O8G A;  1O8L A;  1TYX A;  2XT4 A;  2UVE A;  4XMY A;  2NZM A;  2VBM A;  4PMH A;  1RMG A;  2VFN A;  1O8I A;  1X0C A;  1IB4 A;  1TYW A;  2PYH A;  2O1D A;  4YDT A;  2BSP A;  2J8I A;  4XN0 A;  4W8T A;  4XOP A;  3SZE A;  1QJV A;  3DU1 X;  1OFD A;  3T9G A;  4Z06 A;  2EWE A;  4OJP A;  1BHE A;  4YFO A;  2INV A;  1QRB A;  4OZY A;  4Z05 A;  1NHC A;  4XLH A;  1DAB A;  3B90 A;  4XON A;  4AVZ A;  3BH7 B;  2V5I A;  3SY2 A;  3B4N A;  1RU4 A;  1K4Z A;  1OGM X;  1OFE A;  3PSS A;  4C2L A;  2VJJ A;  4W8R A;  1BN8 A;  2UVF A;  4OJO A;  2XTY A;  1QA2 A;  3GQA A;  2NTB A;  4XLA A;  4XKV A;  1O8D A;  4OJ6 A;  1KTW A;  4I84 A;  3N90 A;  1TYV A;  1EZG A;  1CLW A;  1XG2 A;  2J8K A;  3VSV A;  3TH0 A;  2BM6 A;  1QRC A; 
#chains in the Genus database with same CATH homology
 2VFM A;  2B0R A;  2VFO A;  1WXR A;  3H09 A;  4OJL A;  2J8I A;  3SZE A;  1TYW A;  4KH3 A;  2F3L A;  3BH6 B;  4OJP A;  2BX6 A;  1QRB A;  4OM9 A;  1QA3 A;  2VFP A;  3P4G A;  1DAB A;  4OJ5 A;  2G0Y A;  2IOU G;  1QQ1 A;  2W7Z A;  2VFQ A;  3BH7 B;  3JX8 A;  2V5I A;  1HF2 A;  3LYC A;  4V02 C;  1K4Z A;  2YUH A;  3RIQ A;  3SYJ A;  1KQ5 A;  4OJO A;  5JLV C;  3AK5 A;  3N6Z A;  1QA2 A;  4JRA C;  5JMC B;  1TYU A;  2BM7 A;  4OPW A;  3ML3 A;  4OJ6 A;  1TSP A;  3LJY A;  1TYX A;  3PET A;  3N90 A;  2XC1 A;  2BM5 A;  1TYV A;  1CLW A;  2VFN A;  1QA1 A;  3TH0 A;  2BM6 A;  1QRC A;  2BM4 A;  1K8F A; 
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