2BM5 | Genus

Total Genus 78

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	78
sequence length	183
structure length	183
Chain Sequence	MQQWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLAGG

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Pentapeptide repeat protein
source organism	Mycobacterium tuberculosis
publication title	A Fluroquinolone Resistance Protein from Mycobacterium Tuberculosis that Mimics DNA pubmed doi rcsb
molecule keywords	PENTAPEPTIDE REPEAT FAMILY PROTEIN
total genus	78
structure length	183
sequence length	183
chains with identical sequence	B
ec nomenclature
pdb deposition date	2005-03-09

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF13599	Pentapeptide_4	Pentapeptide repeats (9 copies)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.160.20.100	Mainly Beta	3 Solenoid	Pectate Lyase C-like	Pectate Lyase C-like	2bm5A00

5JMCB 2W7ZA 2F3LA 4JRAC 2BM5A 5JLVC 2BM4A 2BM6A 2G0YA 2BM7A 2J8IA 3N90A
chains in the Genus database with same CATH superfamily

3EQOA 3GQAA 3P4GA 4Z06A 2O1DA 4OJ5A 4YELA 3VMVA 2BM7A 2BSPA 3B8YA 3SQVA 2XTWA 2B0RA 2J8KA 3BH7B 4OZZA 1RU4A 3VMWA 4OZYA 2NSPA 4W8RA 1NHCA 1O8MA 1OGMX 1JRGA 1BHEA 2W7ZA 4XL9A 3EQNA 3SYJA 1O8LA 1OFLA 2F3LA 3PSZA 1KCCA 3ML3A 1LM1A 4XN3A 1IA5A 4OJ6A 4HWVA 1EZGA 2PYHA 4PMHA 4YC5A 2IQ7A 5JLVC 1QCXA 3PSSA 1QRBA 2BM6A 4YFOA 4OPWA 2QXZA 2J8IA 4XLHA 1OFMA 4XOTA 4YZXA 2Z8GA 4YZ0A 4OJPA 1PXZA 2VFNA 1DABA 1IB4A 2VFOA 4URRA 3TH0A 1OOCA 3DU1X 1OFEA 3GRHA 3KRGA 3AK5A 2UVEA 4XKVA 5AMVA 3ZPPA 3JX8A 1L1IA 3LMWA 1O8FA 2X3HA 4OM9A 2XTYA 1KQ5A 4OJOA 3WWGA 3LYCA 2X6XA 1OFDA 2QY1A 4NK8A 1X0CA 4XLAA 2IOUG 2QX3A 1TYWA 3NAWA 1QA1A 3JURA 3SUCA 4JRAC 2XC1A 2PYGA 2V5IA 2YUHA 3ZSCA 1QQ1A 4MR0A 4W8TA 4XOPA 1O8IA 2O6WA 3NB2A 4XLEA 4MXNA 3T9GA 4XONA 1OGOX 1BN8A 1O8EA 1O8GA 3B4NA 4YDTA 2X6WA 4YCQA 3VSVA 4XLFA 2NTBA 2INVA 2QYUA 3LJYA 4C2LA 1WMRA 2VBEA 1HF2A 1TSPA 3PETA 2VJJA 1K5CA 1H80A 3N6ZA 4XORA 4W8QA 3FY3A 1HG8A 1O8HA 2BM4A 2QZAA 1TYUA 2PECA 1QJVA 1GQ8A 1LLWA 2EWEA 4KH3A 4NK6A 1CZFA 3VSTA 3N90A 4U49A 2VBKA 5C1EA 2INUA 4V02C 1O8JA 3B90A 1KCDA 1K8FA 2G0YA 4XMYA 3RIQA 1AIRA 2NT9A 3GQ8A 1TYVA 3H09A 4XKWA 1QRCA 1QA2A 5JMCB 1XG2A 2X6YA 4XM3A 4OJLA 4XR6A 3SZEA 2XT2A 4U4BA 4XQFA 1PE9A 2VFMA 4XNFA 1LLZA 2VBMA 5C1CA 1VBLA 1IDKA 4Z05A 2NTPA 3VSUA 3BH6B 1PLUA 1IDJA 2BM5A 1KTWA 2O17A 5DNSA 3UW0A 1EE6A 4Z03A 2BX6A 1RWRA 1DBOA 1RMGA 4YEIA 1JTAA 1DBGA 4YZQA 2NSTA 1O8DA 4YEJA 2NT6A 4W8SA 1QA3A 2O04A 2UVFA 3GQ7A 3SY2A 2X85A 2XT4A 2VFPA 1K4ZA 1O88A 4YZAA 1O8KA 2NTQA 4I84A 2VFQA 2VJIA 1EA0A 2ODLA 4EW9A 2O0VA 1WXRA 1TYXA 2XTXA 4AVZA 2NZMA 1CLWA 4XN0A 3GQ9A 2O0WA 4XLCA
chains in the Genus database with same CATH topology

1DABA 2VFOA 3BH6B 3TH0A 3P4GA 2BM5A 4OJ5A 3AK5A 2BM7A 3LJYA 3JX8A 1HF2A 2B0RA 1TSPA 3PETA 3BH7B 3N6ZA 2BX6A 2BM4A 4OM9A 4OJOA 1KQ5A 1TYUA 3LYCA 4KH3A 3N90A 2W7ZA 4V02C 1QA3A 3SYJA 2F3LA 2IOUG 1TYWA 1K8FA 2VFPA 1K4ZA 3ML3A 2G0YA 3RIQA 1QA1A 2VFQA 1TYVA 3H09A 4JRAC 1QRCA 2XC1A 4OJ6A 3SZEA 5JMCB 1QA2A 4OJLA 1WXRA 1TYXA 5JLVC 1QRBA 2BM6A 2V5IA 2VFMA 2YUHA 1CLWA 4OPWA 1QQ1A 2J8IA 4OJPA 2VFNA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 5JMC B;  2W7Z A;  2F3L A;  4JRA C;  2BM5 A;  5JLV C;  2BM4 A;  2BM6 A;  2G0Y A;  2BM7 A;  2J8I A;  3N90 A; 
#chains in the Genus database with same CATH topology
 3EQO A;  3GQA A;  3P4G A;  4Z06 A;  2O1D A;  4OJ5 A;  4YEL A;  3VMV A;  2BM7 A;  2BSP A;  3B8Y A;  3SQV A;  2XTW A;  2B0R A;  2J8K A;  3BH7 B;  4OZZ A;  1RU4 A;  3VMW A;  4OZY A;  2NSP A;  4W8R A;  1NHC A;  1O8M A;  1OGM X;  1JRG A;  1BHE A;  2W7Z A;  4XL9 A;  3EQN A;  3SYJ A;  1O8L A;  1OFL A;  2F3L A;  3PSZ A;  1KCC A;  3ML3 A;  1LM1 A;  4XN3 A;  1IA5 A;  4OJ6 A;  4HWV A;  1EZG A;  2PYH A;  4PMH A;  4YC5 A;  2IQ7 A;  5JLV C;  1QCX A;  3PSS A;  1QRB A;  2BM6 A;  4YFO A;  4OPW A;  2QXZ A;  2J8I A;  4XLH A;  1OFM A;  4XOT A;  4YZX A;  2Z8G A;  4YZ0 A;  4OJP A;  1PXZ A;  2VFN A;  1DAB A;  1IB4 A;  2VFO A;  4URR A;  3TH0 A;  1OOC A;  3DU1 X;  1OFE A;  3GRH A;  3KRG A;  3AK5 A;  2UVE A;  4XKV A;  5AMV A;  3ZPP A;  3JX8 A;  1L1I A;  3LMW A;  1O8F A;  2X3H A;  4OM9 A;  2XTY A;  1KQ5 A;  4OJO A;  3WWG A;  3LYC A;  2X6X A;  1OFD A;  2QY1 A;  4NK8 A;  1X0C A;  4XLA A;  2IOU G;  2QX3 A;  1TYW A;  3NAW A;  1QA1 A;  3JUR A;  3SUC A;  4JRA C;  2XC1 A;  2PYG A;  2V5I A;  2YUH A;  3ZSC A;  1QQ1 A;  4MR0 A;  4W8T A;  4XOP A;  1O8I A;  2O6W A;  3NB2 A;  4XLE A;  4MXN A;  3T9G A;  4XON A;  1OGO X;  1BN8 A;  1O8E A;  1O8G A;  3B4N A;  4YDT A;  2X6W A;  4YCQ A;  3VSV A;  4XLF A;  2NTB A;  2INV A;  2QYU A;  3LJY A;  4C2L A;  1WMR A;  2VBE A;  1HF2 A;  1TSP A;  3PET A;  2VJJ A;  1K5C A;  1H80 A;  3N6Z A;  4XOR A;  4W8Q A;  3FY3 A;  1HG8 A;  1O8H A;  2BM4 A;  2QZA A;  1TYU A;  2PEC A;  1QJV A;  1GQ8 A;  1LLW A;  2EWE A;  4KH3 A;  4NK6 A;  1CZF A;  3VST A;  3N90 A;  4U49 A;  2VBK A;  5C1E A;  2INU A;  4V02 C;  1O8J A;  3B90 A;  1KCD A;  1K8F A;  2G0Y A;  4XMY A;  3RIQ A;  1AIR A;  2NT9 A;  3GQ8 A;  1TYV A;  3H09 A;  4XKW A;  1QRC A;  1QA2 A;  5JMC B;  1XG2 A;  2X6Y A;  4XM3 A;  4OJL A;  4XR6 A;  3SZE A;  2XT2 A;  4U4B A;  4XQF A;  1PE9 A;  2VFM A;  4XNF A;  1LLZ A;  2VBM A;  5C1C A;  1VBL A;  1IDK A;  4Z05 A;  2NTP A;  3VSU A;  3BH6 B;  1PLU A;  1IDJ A;  2BM5 A;  1KTW A;  2O17 A;  5DNS A;  3UW0 A;  1EE6 A;  4Z03 A;  2BX6 A;  1RWR A;  1DBO A;  1RMG A;  4YEI A;  1JTA A;  1DBG A;  4YZQ A;  2NST A;  1O8D A;  4YEJ A;  2NT6 A;  4W8S A;  1QA3 A;  2O04 A;  2UVF A;  3GQ7 A;  3SY2 A;  2X85 A;  2XT4 A;  2VFP A;  1K4Z A;  1O88 A;  4YZA A;  1O8K A;  2NTQ A;  4I84 A;  2VFQ A;  2VJI A;  1EA0 A;  2ODL A;  4EW9 A;  2O0V A;  1WXR A;  1TYX A;  2XTX A;  4AVZ A;  2NZM A;  1CLW A;  4XN0 A;  3GQ9 A;  2O0W A;  4XLC A; 
#chains in the Genus database with same CATH homology
 1DAB A;  2VFO A;  3BH6 B;  3TH0 A;  3P4G A;  2BM5 A;  4OJ5 A;  3AK5 A;  2BM7 A;  3LJY A;  3JX8 A;  1HF2 A;  2B0R A;  1TSP A;  3PET A;  3BH7 B;  3N6Z A;  2BX6 A;  2BM4 A;  4OM9 A;  4OJO A;  1KQ5 A;  1TYU A;  3LYC A;  4KH3 A;  3N90 A;  2W7Z A;  4V02 C;  1QA3 A;  3SYJ A;  2F3L A;  2IOU G;  1TYW A;  1K8F A;  2VFP A;  1K4Z A;  3ML3 A;  2G0Y A;  3RIQ A;  1QA1 A;  2VFQ A;  1TYV A;  3H09 A;  4JRA C;  1QRC A;  2XC1 A;  4OJ6 A;  3SZE A;  5JMC B;  1QA2 A;  4OJL A;  1WXR A;  1TYX A;  5JLV C;  1QRB A;  2BM6 A;  2V5I A;  2VFM A;  2YUH A;  1CLW A;  4OPW A;  1QQ1 A;  2J8I A;  4OJP A;  2VFN A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2BM5A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations