2BSP | Genus

Total Genus 154

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	154
sequence length	399
structure length	399
Chain Sequence	ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQKAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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Viewer cachePut cache://localLOAD_/file/5cfcb39661c9f42f3ee3e692/pdb.gz

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Lyase
source organism	Bacillus subtilis
publication title	The Conserved Arginine Proximal to the Essential Calcium of Bacillus Subtilis Pectate Lyase Stabilizes the Transition State rcsb
molecule keywords	PROTEIN (PECTATE LYASE)
total genus	154
structure length	399
sequence length	399
ec nomenclature	ec 4.2.2.2: Pectate lyase.
pdb deposition date	1998-07-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00544	Pec_lyase_C	Pectate lyase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.160.20.10	Mainly Beta	3 Solenoid	Pectate Lyase C-like	Single-stranded right-handed beta-helix, Pectin lyase-like	2bspA00

4XKVA 1O8MA 4XORA 1O8JA 2VJJA 4YEJA 3LMWA 1IDKA 1RWRA 2NSTA 2NTQA 4URRA 3VSVA 1KTWA 2O17A 4Z03A 3B90A 1O8EA 1NHCA 4OJ6A 3VMVA 4XONA 1CZFA 1IA5A 2X3HA 2QXZA 3ZSCA 2NZMA 3EQNA 1KCCA 3T9GA 4W8SA 1O8IA 2NT9A 4XN3A 3GQ8A 4XLFA 2BSPA 1K5CA 1O8DA 1XG2A 1O8LA 4XQFA 4YELA 1RU4A 2PECA 5AMVA 1JRGA 2NTPA 1IB4A 4W8RA 4EW9A 1H80A 1OFMA 2O04A 3KRGA 4YZXA 1BHEA 1JTAA 5C1CA 2PYHA 3FY3A 4W8QA 4XR6A 4XM3A 4HWVA 4XLEA 3SUCA 2VJIA 1O8KA 2Z8GA 2VBMA 4U4BA 3GQ7A 1OGOX 2VBEA 1PE9A 4NK8A 1PXZA 2NT6A 4XN0A 4YZAA 3B4NA 2X6XA 2INUA 3VMWA 4W8TA 1O8GA 2NSPA 4AVZA 3ZPPA 1GQ8A 3GQ9A 1O8FA 3VSUA 4C2LA 1QCXA 2X6YA 4Z06A 4MXNA 2QX3A 2UVEA 1VBLA 4XOPA 4YZQA 1X0CA 1DBGA 2O0VA 4XLCA 3GRHA 1IDJA 4XMYA 1OOCA 2EWEA 2X85A 2IQ7A 4XNFA 4XOTA 5C1EA 4XLAA 1O8HA 1BN8A 1OGMX 1WMRA 3WWGA 3B8YA 3UW0A 2O1DA 2QY1A 2PYGA 4XL9A 3JURA 2X6WA 2O0WA 4OJPA 4I84A 1HG8A 4NK6A 4OJLA 4XLHA 4Z05A 1EE6A 4XKWA 1AIRA 2VBKA 4OZYA 1OFLA 1QJVA 1KCDA 1PLUA 2UVFA 4PMHA 4OZZA 3EQOA 1DBOA 4OJOA 1RMGA 2ODLA 4YZ0A 4MR0A 2INVA 3VSTA 4OJ5A 4U49A 2NTBA 1O88A 3GQAA
chains in the Genus database with same CATH superfamily

4XKVA 1O8MA 3PSZA 1LM1A 4XORA 1O8JA 2VJJA 4YEJA 2BM6A 3LMWA 1IDKA 1RWRA 2NSTA 2NTQA 4URRA 2BM4A 1KTWA 3VSVA 2O17A 4Z03A 1CLWA 3B90A 1O8EA 2QZAA 1NHCA 4OJ6A 3VMVA 4YFOA 1DABA 4YC5A 4XONA 1CZFA 1IA5A 2X3HA 2QXZA 2VFNA 2VFOA 3ZSCA 2NZMA 3EQNA 1KCCA 5DNSA 3T9GA 2W7ZA 4W8SA 1QA3A 1O8IA 2NT9A 3SQVA 4XN3A 3GQ8A 1QRCA 3PSSA 4XLFA 5JLVC 2BSPA 2XTXA 1O8DA 1OFEA 1XG2A 1O8LA 4YDTA 4XQFA 1K5CA 4YELA 1RU4A 2PECA 5AMVA 1JRGA 2NTPA 1IB4A 4W8RA 5JMCB 4EW9A 1OFDA 1H80A 2B0RA 1QRBA 1OFMA 2O04A 3KRGA 4YZXA 2YUHA 1QQ1A 1BHEA 1JTAA 5C1CA 2IOUG 2PYHA 3RIQA 3FY3A 4W8QA 4XR6A 4XM3A 2VFPA 4HWVA 4V02C 2XT2A 4XLEA 3SUCA 2VJIA 1O8KA 2Z8GA 2VBMA 4U4BA 2BX6A 3N6ZA 1TYXA 3SY2A 2BM5A 3GQ7A 1EZGA 1OGOX 2VBEA 1PE9A 3DU1X 4NK8A 4OPWA 2QYUA 1PXZA 2NT6A 4XN0A 4YZAA 3B4NA 2X6XA 2INUA 1TYWA 3VMWA 4W8TA 1O8GA 2NSPA 4AVZA 3JX8A 3ZPPA 1TYVA 1GQ8A 4YCQA 3GQ9A 1O8FA 3VSUA 3N90A 4C2LA 1QCXA 2X6YA 3BH6B 4Z06A 4MXNA 2QX3A 2UVEA 1VBLA 3P4GA 4XOPA 1X0CA 1DBGA 2O0VA 4YZQA 2O6WA 4XLCA 3GRHA 2V5IA 1IDJA 1QA2A 4XMYA 4YEIA 1L1IA 1OOCA 1LLWA 2EWEA 2J8KA 2X85A 2IQ7A 3NB2A 4XNFA 4XOTA 5C1EA 1KQ5A 1WXRA 2XTYA 1O8HA 2VFMA 3PETA 1K8FA 4XLAA 1BN8A 2J8IA 1OGMX 1WMRA 3WWGA 3B8YA 1HF2A 2O1DA 3NAWA 3UW0A 1EA0A 2QY1A 3SZEA 1TSPA 2PYGA 3H09A 4XL9A 1K4ZA 3JURA 2X6WA 2O0WA 3ML3A 3AK5A 4OJPA 1LLZA 4I84A 2XTWA 1HG8A 4NK6A 4OJLA 4XLHA 4Z05A 1EE6A 2XT4A 4XKWA 1AIRA 2VBKA 1TYUA 4KH3A 3LYCA 4JRAC 2G0YA 4OM9A 3BH7B 4OZYA 1OFLA 1QJVA 3SYJA 1KCDA 1PLUA 2UVFA 4PMHA 4OZZA 2BM7A 1DBOA 3EQOA 4OJOA 1RMGA 2ODLA 4YZ0A 4MR0A 2INVA 3TH0A 2VFQA 1QA1A 3VSTA 4OJ5A 2F3LA 4U49A 2XC1A 2NTBA 3LJYA 1O88A 3GQAA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4XKV A;  1O8M A;  4XOR A;  1O8J A;  2VJJ A;  4YEJ A;  3LMW A;  1IDK A;  1RWR A;  2NST A;  2NTQ A;  4URR A;  3VSV A;  1KTW A;  2O17 A;  4Z03 A;  3B90 A;  1O8E A;  1NHC A;  4OJ6 A;  3VMV A;  4XON A;  1CZF A;  1IA5 A;  2X3H A;  2QXZ A;  3ZSC A;  2NZM A;  3EQN A;  1KCC A;  3T9G A;  4W8S A;  1O8I A;  2NT9 A;  4XN3 A;  3GQ8 A;  4XLF A;  2BSP A;  1K5C A;  1O8D A;  1XG2 A;  1O8L A;  4XQF A;  4YEL A;  1RU4 A;  2PEC A;  5AMV A;  1JRG A;  2NTP A;  1IB4 A;  4W8R A;  4EW9 A;  1H80 A;  1OFM A;  2O04 A;  3KRG A;  4YZX A;  1BHE A;  1JTA A;  5C1C A;  2PYH A;  3FY3 A;  4W8Q A;  4XR6 A;  4XM3 A;  4HWV A;  4XLE A;  3SUC A;  2VJI A;  1O8K A;  2Z8G A;  2VBM A;  4U4B A;  3GQ7 A;  1OGO X;  2VBE A;  1PE9 A;  4NK8 A;  1PXZ A;  2NT6 A;  4XN0 A;  4YZA A;  3B4N A;  2X6X A;  2INU A;  3VMW A;  4W8T A;  1O8G A;  2NSP A;  4AVZ A;  3ZPP A;  1GQ8 A;  3GQ9 A;  1O8F A;  3VSU A;  4C2L A;  1QCX A;  2X6Y A;  4Z06 A;  4MXN A;  2QX3 A;  2UVE A;  1VBL A;  4XOP A;  4YZQ A;  1X0C A;  1DBG A;  2O0V A;  4XLC A;  3GRH A;  1IDJ A;  4XMY A;  1OOC A;  2EWE A;  2X85 A;  2IQ7 A;  4XNF A;  4XOT A;  5C1E A;  4XLA A;  1O8H A;  1BN8 A;  1OGM X;  1WMR A;  3WWG A;  3B8Y A;  3UW0 A;  2O1D A;  2QY1 A;  2PYG A;  4XL9 A;  3JUR A;  2X6W A;  2O0W A;  4OJP A;  4I84 A;  1HG8 A;  4NK6 A;  4OJL A;  4XLH A;  4Z05 A;  1EE6 A;  4XKW A;  1AIR A;  2VBK A;  4OZY A;  1OFL A;  1QJV A;  1KCD A;  1PLU A;  2UVF A;  4PMH A;  4OZZ A;  3EQO A;  1DBO A;  4OJO A;  1RMG A;  2ODL A;  4YZ0 A;  4MR0 A;  2INV A;  3VST A;  4OJ5 A;  4U49 A;  2NTB A;  1O88 A;  3GQA A; 
#chains in the Genus database with same CATH topology
 4XKV A;  1O8M A;  3PSZ A;  1LM1 A;  4XOR A;  1O8J A;  2VJJ A;  4YEJ A;  2BM6 A;  3LMW A;  1IDK A;  1RWR A;  2NST A;  2NTQ A;  4URR A;  2BM4 A;  1KTW A;  3VSV A;  2O17 A;  4Z03 A;  1CLW A;  3B90 A;  1O8E A;  2QZA A;  1NHC A;  4OJ6 A;  3VMV A;  4YFO A;  1DAB A;  4YC5 A;  4XON A;  1CZF A;  1IA5 A;  2X3H A;  2QXZ A;  2VFN A;  2VFO A;  3ZSC A;  2NZM A;  3EQN A;  1KCC A;  5DNS A;  3T9G A;  2W7Z A;  4W8S A;  1QA3 A;  1O8I A;  2NT9 A;  3SQV A;  4XN3 A;  3GQ8 A;  1QRC A;  3PSS A;  4XLF A;  5JLV C;  2BSP A;  2XTX A;  1O8D A;  1OFE A;  1XG2 A;  1O8L A;  4YDT A;  4XQF A;  1K5C A;  4YEL A;  1RU4 A;  2PEC A;  5AMV A;  1JRG A;  2NTP A;  1IB4 A;  4W8R A;  5JMC B;  4EW9 A;  1OFD A;  1H80 A;  2B0R A;  1QRB A;  1OFM A;  2O04 A;  3KRG A;  4YZX A;  2YUH A;  1QQ1 A;  1BHE A;  1JTA A;  5C1C A;  2IOU G;  2PYH A;  3RIQ A;  3FY3 A;  4W8Q A;  4XR6 A;  4XM3 A;  2VFP A;  4HWV A;  4V02 C;  2XT2 A;  4XLE A;  3SUC A;  2VJI A;  1O8K A;  2Z8G A;  2VBM A;  4U4B A;  2BX6 A;  3N6Z A;  1TYX A;  3SY2 A;  2BM5 A;  3GQ7 A;  1EZG A;  1OGO X;  2VBE A;  1PE9 A;  3DU1 X;  4NK8 A;  4OPW A;  2QYU A;  1PXZ A;  2NT6 A;  4XN0 A;  4YZA A;  3B4N A;  2X6X A;  2INU A;  1TYW A;  3VMW A;  4W8T A;  1O8G A;  2NSP A;  4AVZ A;  3JX8 A;  3ZPP A;  1TYV A;  1GQ8 A;  4YCQ A;  3GQ9 A;  1O8F A;  3VSU A;  3N90 A;  4C2L A;  1QCX A;  2X6Y A;  3BH6 B;  4Z06 A;  4MXN A;  2QX3 A;  2UVE A;  1VBL A;  3P4G A;  4XOP A;  1X0C A;  1DBG A;  2O0V A;  4YZQ A;  2O6W A;  4XLC A;  3GRH A;  2V5I A;  1IDJ A;  1QA2 A;  4XMY A;  4YEI A;  1L1I A;  1OOC A;  1LLW A;  2EWE A;  2J8K A;  2X85 A;  2IQ7 A;  3NB2 A;  4XNF A;  4XOT A;  5C1E A;  1KQ5 A;  1WXR A;  2XTY A;  1O8H A;  2VFM A;  3PET A;  1K8F A;  4XLA A;  1BN8 A;  2J8I A;  1OGM X;  1WMR A;  3WWG A;  3B8Y A;  1HF2 A;  2O1D A;  3NAW A;  3UW0 A;  1EA0 A;  2QY1 A;  3SZE A;  1TSP A;  2PYG A;  3H09 A;  4XL9 A;  1K4Z A;  3JUR A;  2X6W A;  2O0W A;  3ML3 A;  3AK5 A;  4OJP A;  1LLZ A;  4I84 A;  2XTW A;  1HG8 A;  4NK6 A;  4OJL A;  4XLH A;  4Z05 A;  1EE6 A;  2XT4 A;  4XKW A;  1AIR A;  2VBK A;  1TYU A;  4KH3 A;  3LYC A;  4JRA C;  2G0Y A;  4OM9 A;  3BH7 B;  4OZY A;  1OFL A;  1QJV A;  3SYJ A;  1KCD A;  1PLU A;  2UVF A;  4PMH A;  4OZZ A;  2BM7 A;  1DBO A;  3EQO A;  4OJO A;  1RMG A;  2ODL A;  4YZ0 A;  4MR0 A;  2INV A;  3TH0 A;  2VFQ A;  1QA1 A;  3VST A;  4OJ5 A;  2F3L A;  4U49 A;  2XC1 A;  2NTB A;  3LJY A;  1O88 A;  3GQA A; 
#chains in the Genus database with same CATH homology
 4XKV A;  1O8M A;  4XOR A;  1O8J A;  2VJJ A;  4YEJ A;  3LMW A;  1IDK A;  1RWR A;  2NST A;  2NTQ A;  4URR A;  3VSV A;  1KTW A;  2O17 A;  4Z03 A;  3B90 A;  1O8E A;  1NHC A;  4OJ6 A;  3VMV A;  4XON A;  1CZF A;  1IA5 A;  2X3H A;  2QXZ A;  3ZSC A;  2NZM A;  3EQN A;  1KCC A;  3T9G A;  4W8S A;  1O8I A;  2NT9 A;  4XN3 A;  3GQ8 A;  4XLF A;  2BSP A;  1K5C A;  1O8D A;  1XG2 A;  1O8L A;  4XQF A;  4YEL A;  1RU4 A;  2PEC A;  5AMV A;  1JRG A;  2NTP A;  1IB4 A;  4W8R A;  4EW9 A;  1H80 A;  1OFM A;  2O04 A;  3KRG A;  4YZX A;  1BHE A;  1JTA A;  5C1C A;  2PYH A;  3FY3 A;  4W8Q A;  4XR6 A;  4XM3 A;  4HWV A;  4XLE A;  3SUC A;  2VJI A;  1O8K A;  2Z8G A;  2VBM A;  4U4B A;  3GQ7 A;  1OGO X;  2VBE A;  1PE9 A;  4NK8 A;  1PXZ A;  2NT6 A;  4XN0 A;  4YZA A;  3B4N A;  2X6X A;  2INU A;  3VMW A;  4W8T A;  1O8G A;  2NSP A;  4AVZ A;  3ZPP A;  1GQ8 A;  3GQ9 A;  1O8F A;  3VSU A;  4C2L A;  1QCX A;  2X6Y A;  4Z06 A;  4MXN A;  2QX3 A;  2UVE A;  1VBL A;  4XOP A;  4YZQ A;  1X0C A;  1DBG A;  2O0V A;  4XLC A;  3GRH A;  1IDJ A;  4XMY A;  1OOC A;  2EWE A;  2X85 A;  2IQ7 A;  4XNF A;  4XOT A;  5C1E A;  4XLA A;  1O8H A;  1BN8 A;  1OGM X;  1WMR A;  3WWG A;  3B8Y A;  3UW0 A;  2O1D A;  2QY1 A;  2PYG A;  4XL9 A;  3JUR A;  2X6W A;  2O0W A;  4OJP A;  4I84 A;  1HG8 A;  4NK6 A;  4OJL A;  4XLH A;  4Z05 A;  1EE6 A;  4XKW A;  1AIR A;  2VBK A;  4OZY A;  1OFL A;  1QJV A;  1KCD A;  1PLU A;  2UVF A;  4PMH A;  4OZZ A;  3EQO A;  1DBO A;  4OJO A;  1RMG A;  2ODL A;  4YZ0 A;  4MR0 A;  2INV A;  3VST A;  4OJ5 A;  4U49 A;  2NTB A;  1O88 A;  3GQA A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2BSPA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations