2EWE | Genus

Total Genus 139

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	139
sequence length	352
structure length	352
Chain Sequence	ATDTGGYAATAGGNVTGAVSKTATSMQDIVNIIDAARLDANGKKVKGGAYPLVITYTGNEDSLINAAAANICGQWSKDPRGVEIKEFTKGITIIGANGSSANFGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGVKKVGLDGSSSSDTGRNITYHHNYYNDVNAKLPLQRGGLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKAINPVTSRYDGKNFGTWVLKGNNITKPADFSTYSITWTADTKPYVNADSWTSTGTFPTVAYNYSPVSAQCVKDKLPGYAGVGKNLATLTSTAC

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Lyase
source organism	Erwinia chrysanthemi
publication title	Structure of a Plant Cell Wall Fragment Complexed to Pectate Lyase C pubmed doi rcsb
molecule keywords	Pectate lyase C
total genus	139
structure length	352
sequence length	352
ec nomenclature	ec 4.2.2.2: Pectate lyase.
pdb deposition date	2005-11-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00544	Pec_lyase_C	Pectate lyase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.160.20.10	Mainly Beta	3 Solenoid	Pectate Lyase C-like	Single-stranded right-handed beta-helix, Pectin lyase-like	2eweA00

2EWEA 4XLAA 4XKWA 4AVZA 3ZSCA 1JTAA 1O88A 4U49A 1BHEA 1OFMA 4OZZA 4YZ0A 1O8LA 4YZXA 1H80A 1O8KA 3EQOA 4OJLA 1JRGA 2ODLA 4XKVA 4W8SA 3LMWA 2X6YA 3T9GA 1OGOX 2PECA 4XQFA 1O8JA 3EQNA 1GQ8A 3FY3A 2O1DA 1RWRA 1O8HA 4MXNA 1XG2A 4EW9A 1KCDA 1KTWA 3JURA 1IDJA 2VBEA 1DBOA 4XLCA 1K5CA 4XN3A 1IA5A 1VBLA 2Z8GA 4XM3A 1PXZA 1DBGA 1RMGA 3GQ7A 2BSPA 4Z05A 4XONA 5C1CA 2NT6A 4XN0A 1QCXA 2X3HA 4XLEA 2INUA 3VSTA 4YEJA 4XOPA 1WMRA 1OOCA 2VBKA 2NZMA 4OJ5A 1EE6A 4I84A 2NSTA 1HG8A 2NTQA 2O0WA 3GQAA 2QY1A 4OZYA 1BN8A 2O0VA 3UW0A 3GRHA 2PYHA 1O8FA 3B4NA 4YZAA 3GQ9A 2NSPA 1O8MA 2NT9A 2IQ7A 3VSVA 2X85A 1PE9A 1QJVA 4NK6A 5C1EA 1O8IA 4XOTA 4XNFA 4W8TA 1O8DA 4XLFA 4OJOA 4PMHA 2QXZA 3B8YA 2VJJA 1OGMX 4YELA 5AMVA 4YZQA 1O8GA 2O17A 4URRA 4W8QA 2X6XA 3ZPPA 3B90A 4W8RA 4XR6A 3VSUA 3WWGA 2NTPA 2O04A 4OJPA 4NK8A 3VMWA 2VBMA 2UVEA 4OJ6A 2NTBA 3SUCA 4Z06A 1IDKA 2VJIA 4XORA 4XMYA 2UVFA 3VMVA 3GQ8A 2QX3A 2X6WA 3KRGA 4C2LA 4HWVA 2PYGA 1RU4A 4XL9A 1CZFA 1X0CA 4MR0A 2INVA 1IB4A 4Z03A 1PLUA 4U4BA 1NHCA 1O8EA 1OFLA 4XLHA 1KCCA 1AIRA
chains in the Genus database with same CATH superfamily

2EWEA 4XLAA 4XKWA 4AVZA 3ZSCA 1JTAA 3AK5A 1O88A 3PSZA 1BHEA 1OFMA 4OZZA 4U49A 1O8LA 4YZXA 4YZ0A 2VFQA 1H80A 1O8KA 3NAWA 3EQOA 4OJLA 1JRGA 2YUHA 3N6ZA 3TH0A 2ODLA 4XKVA 4W8SA 2VFPA 3LMWA 2X6YA 3N90A 3T9GA 1OGOX 2PECA 3JX8A 4XQFA 1O8JA 3EQNA 1GQ8A 3BH7B 4YDTA 2QZAA 3FY3A 1QA1A 2O1DA 1RWRA 1O8HA 2XTWA 4MXNA 1XG2A 4EW9A 4YC5A 4YCQA 2J8KA 1KCDA 2VFNA 2J8IA 3NB2A 1KTWA 3JURA 1IDJA 2VBEA 1DBOA 1QRCA 3BH6B 4XLCA 4YEIA 1K5CA 4XN3A 1IA5A 1VBLA 1TSPA 2Z8GA 4XM3A 1PXZA 1TYWA 1DBGA 1RMGA 3GQ7A 2BSPA 4Z05A 4XONA 5C1CA 3DU1X 2NT6A 4XN0A 1QCXA 2B0RA 2O6WA 1K4ZA 2X3HA 4XLEA 2INUA 5DNSA 2BM7A 2XT2A 3SYJA 3VSTA 4YEJA 4XOPA 1WMRA 1OOCA 2VBKA 2NZMA 4OJ5A 1EE6A 1QQ1A 4I84A 2NSTA 1HG8A 2NTQA 2O0WA 3GQAA 2QY1A 4OZYA 1BN8A 4YFOA 2O0VA 2G0YA 2XTXA 2QYUA 3GRHA 2PYHA 1O8FA 3UW0A 2BX6A 1DABA 1QA3A 2VFMA 3B4NA 4YZAA 2V5IA 2NSPA 3GQ9A 3SY2A 1O8MA 3SQVA 2NT9A 1EA0A 3PSSA 2IQ7A 3VSVA 2X85A 1EZGA 1PE9A 1QJVA 2BM4A 4NK6A 1O8IA 1K8FA 2W7ZA 5C1EA 4XOTA 4XNFA 4W8TA 4OPWA 1O8DA 4KH3A 4XLFA 4OJOA 4PMHA 2QXZA 3B8YA 2VJJA 1OFEA 1OGMX 4JRAC 4YELA 5AMVA 2XT4A 1OFDA 4YZQA 1O8GA 2XTYA 2O17A 4URRA 4W8QA 2X6XA 3ZPPA 3B90A 2BM6A 4W8RA 1L1IA 4XR6A 1KQ5A 2IOUG 2XC1A 5JMCB 3RIQA 1TYVA 3PETA 3VSUA 3WWGA 3ML3A 2NTPA 2O04A 4OJPA 1HF2A 4NK8A 1CLWA 3SZEA 3VMWA 1QA2A 2VBMA 2UVEA 4OJ6A 2NTBA 3SUCA 4Z06A 1IDKA 2VJIA 5JLVC 4XORA 4V02C 1LM1A 1TYUA 4XMYA 2UVFA 3VMVA 3GQ8A 4OM9A 2QX3A 2X6WA 3KRGA 4C2LA 2BM5A 4HWVA 1AIRA 1LLZA 2PYGA 3LJYA 2VFOA 3LYCA 1RU4A 4XL9A 1WXRA 1CZFA 1TYXA 1X0CA 4MR0A 2INVA 1IB4A 4Z03A 1PLUA 4U4BA 1NHCA 1O8EA 1QRBA 1OFLA 4XLHA 3P4GA 1KCCA 1LLWA 2F3LA 3H09A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2EWE A;  4XLA A;  4XKW A;  4AVZ A;  3ZSC A;  1JTA A;  1O88 A;  4U49 A;  1BHE A;  1OFM A;  4OZZ A;  4YZ0 A;  1O8L A;  4YZX A;  1H80 A;  1O8K A;  3EQO A;  4OJL A;  1JRG A;  2ODL A;  4XKV A;  4W8S A;  3LMW A;  2X6Y A;  3T9G A;  1OGO X;  2PEC A;  4XQF A;  1O8J A;  3EQN A;  1GQ8 A;  3FY3 A;  2O1D A;  1RWR A;  1O8H A;  4MXN A;  1XG2 A;  4EW9 A;  1KCD A;  1KTW A;  3JUR A;  1IDJ A;  2VBE A;  1DBO A;  4XLC A;  1K5C A;  4XN3 A;  1IA5 A;  1VBL A;  2Z8G A;  4XM3 A;  1PXZ A;  1DBG A;  1RMG A;  3GQ7 A;  2BSP A;  4Z05 A;  4XON A;  5C1C A;  2NT6 A;  4XN0 A;  1QCX A;  2X3H A;  4XLE A;  2INU A;  3VST A;  4YEJ A;  4XOP A;  1WMR A;  1OOC A;  2VBK A;  2NZM A;  4OJ5 A;  1EE6 A;  4I84 A;  2NST A;  1HG8 A;  2NTQ A;  2O0W A;  3GQA A;  2QY1 A;  4OZY A;  1BN8 A;  2O0V A;  3UW0 A;  3GRH A;  2PYH A;  1O8F A;  3B4N A;  4YZA A;  3GQ9 A;  2NSP A;  1O8M A;  2NT9 A;  2IQ7 A;  3VSV A;  2X85 A;  1PE9 A;  1QJV A;  4NK6 A;  5C1E A;  1O8I A;  4XOT A;  4XNF A;  4W8T A;  1O8D A;  4XLF A;  4OJO A;  4PMH A;  2QXZ A;  3B8Y A;  2VJJ A;  1OGM X;  4YEL A;  5AMV A;  4YZQ A;  1O8G A;  2O17 A;  4URR A;  4W8Q A;  2X6X A;  3ZPP A;  3B90 A;  4W8R A;  4XR6 A;  3VSU A;  3WWG A;  2NTP A;  2O04 A;  4OJP A;  4NK8 A;  3VMW A;  2VBM A;  2UVE A;  4OJ6 A;  2NTB A;  3SUC A;  4Z06 A;  1IDK A;  2VJI A;  4XOR A;  4XMY A;  2UVF A;  3VMV A;  3GQ8 A;  2QX3 A;  2X6W A;  3KRG A;  4C2L A;  4HWV A;  2PYG A;  1RU4 A;  4XL9 A;  1CZF A;  1X0C A;  4MR0 A;  2INV A;  1IB4 A;  4Z03 A;  1PLU A;  4U4B A;  1NHC A;  1O8E A;  1OFL A;  4XLH A;  1KCC A;  1AIR A; 
#chains in the Genus database with same CATH topology
 2EWE A;  4XLA A;  4XKW A;  4AVZ A;  3ZSC A;  1JTA A;  3AK5 A;  1O88 A;  3PSZ A;  1BHE A;  1OFM A;  4OZZ A;  4U49 A;  1O8L A;  4YZX A;  4YZ0 A;  2VFQ A;  1H80 A;  1O8K A;  3NAW A;  3EQO A;  4OJL A;  1JRG A;  2YUH A;  3N6Z A;  3TH0 A;  2ODL A;  4XKV A;  4W8S A;  2VFP A;  3LMW A;  2X6Y A;  3N90 A;  3T9G A;  1OGO X;  2PEC A;  3JX8 A;  4XQF A;  1O8J A;  3EQN A;  1GQ8 A;  3BH7 B;  4YDT A;  2QZA A;  3FY3 A;  1QA1 A;  2O1D A;  1RWR A;  1O8H A;  2XTW A;  4MXN A;  1XG2 A;  4EW9 A;  4YC5 A;  4YCQ A;  2J8K A;  1KCD A;  2VFN A;  2J8I A;  3NB2 A;  1KTW A;  3JUR A;  1IDJ A;  2VBE A;  1DBO A;  1QRC A;  3BH6 B;  4XLC A;  4YEI A;  1K5C A;  4XN3 A;  1IA5 A;  1VBL A;  1TSP A;  2Z8G A;  4XM3 A;  1PXZ A;  1TYW A;  1DBG A;  1RMG A;  3GQ7 A;  2BSP A;  4Z05 A;  4XON A;  5C1C A;  3DU1 X;  2NT6 A;  4XN0 A;  1QCX A;  2B0R A;  2O6W A;  1K4Z A;  2X3H A;  4XLE A;  2INU A;  5DNS A;  2BM7 A;  2XT2 A;  3SYJ A;  3VST A;  4YEJ A;  4XOP A;  1WMR A;  1OOC A;  2VBK A;  2NZM A;  4OJ5 A;  1EE6 A;  1QQ1 A;  4I84 A;  2NST A;  1HG8 A;  2NTQ A;  2O0W A;  3GQA A;  2QY1 A;  4OZY A;  1BN8 A;  4YFO A;  2O0V A;  2G0Y A;  2XTX A;  2QYU A;  3GRH A;  2PYH A;  1O8F A;  3UW0 A;  2BX6 A;  1DAB A;  1QA3 A;  2VFM A;  3B4N A;  4YZA A;  2V5I A;  2NSP A;  3GQ9 A;  3SY2 A;  1O8M A;  3SQV A;  2NT9 A;  1EA0 A;  3PSS A;  2IQ7 A;  3VSV A;  2X85 A;  1EZG A;  1PE9 A;  1QJV A;  2BM4 A;  4NK6 A;  1O8I A;  1K8F A;  2W7Z A;  5C1E A;  4XOT A;  4XNF A;  4W8T A;  4OPW A;  1O8D A;  4KH3 A;  4XLF A;  4OJO A;  4PMH A;  2QXZ A;  3B8Y A;  2VJJ A;  1OFE A;  1OGM X;  4JRA C;  4YEL A;  5AMV A;  2XT4 A;  1OFD A;  4YZQ A;  1O8G A;  2XTY A;  2O17 A;  4URR A;  4W8Q A;  2X6X A;  3ZPP A;  3B90 A;  2BM6 A;  4W8R A;  1L1I A;  4XR6 A;  1KQ5 A;  2IOU G;  2XC1 A;  5JMC B;  3RIQ A;  1TYV A;  3PET A;  3VSU A;  3WWG A;  3ML3 A;  2NTP A;  2O04 A;  4OJP A;  1HF2 A;  4NK8 A;  1CLW A;  3SZE A;  3VMW A;  1QA2 A;  2VBM A;  2UVE A;  4OJ6 A;  2NTB A;  3SUC A;  4Z06 A;  1IDK A;  2VJI A;  5JLV C;  4XOR A;  4V02 C;  1LM1 A;  1TYU A;  4XMY A;  2UVF A;  3VMV A;  3GQ8 A;  4OM9 A;  2QX3 A;  2X6W A;  3KRG A;  4C2L A;  2BM5 A;  4HWV A;  1AIR A;  1LLZ A;  2PYG A;  3LJY A;  2VFO A;  3LYC A;  1RU4 A;  4XL9 A;  1WXR A;  1CZF A;  1TYX A;  1X0C A;  4MR0 A;  2INV A;  1IB4 A;  4Z03 A;  1PLU A;  4U4B A;  1NHC A;  1O8E A;  1QRB A;  1OFL A;  4XLH A;  3P4G A;  1KCC A;  1LLW A;  2F3L A;  3H09 A; 
#chains in the Genus database with same CATH homology
 2EWE A;  4XLA A;  4XKW A;  4AVZ A;  3ZSC A;  1JTA A;  1O88 A;  4U49 A;  1BHE A;  1OFM A;  4OZZ A;  4YZ0 A;  1O8L A;  4YZX A;  1H80 A;  1O8K A;  3EQO A;  4OJL A;  1JRG A;  2ODL A;  4XKV A;  4W8S A;  3LMW A;  2X6Y A;  3T9G A;  1OGO X;  2PEC A;  4XQF A;  1O8J A;  3EQN A;  1GQ8 A;  3FY3 A;  2O1D A;  1RWR A;  1O8H A;  4MXN A;  1XG2 A;  4EW9 A;  1KCD A;  1KTW A;  3JUR A;  1IDJ A;  2VBE A;  1DBO A;  4XLC A;  1K5C A;  4XN3 A;  1IA5 A;  1VBL A;  2Z8G A;  4XM3 A;  1PXZ A;  1DBG A;  1RMG A;  3GQ7 A;  2BSP A;  4Z05 A;  4XON A;  5C1C A;  2NT6 A;  4XN0 A;  1QCX A;  2X3H A;  4XLE A;  2INU A;  3VST A;  4YEJ A;  4XOP A;  1WMR A;  1OOC A;  2VBK A;  2NZM A;  4OJ5 A;  1EE6 A;  4I84 A;  2NST A;  1HG8 A;  2NTQ A;  2O0W A;  3GQA A;  2QY1 A;  4OZY A;  1BN8 A;  2O0V A;  3UW0 A;  3GRH A;  2PYH A;  1O8F A;  3B4N A;  4YZA A;  3GQ9 A;  2NSP A;  1O8M A;  2NT9 A;  2IQ7 A;  3VSV A;  2X85 A;  1PE9 A;  1QJV A;  4NK6 A;  5C1E A;  1O8I A;  4XOT A;  4XNF A;  4W8T A;  1O8D A;  4XLF A;  4OJO A;  4PMH A;  2QXZ A;  3B8Y A;  2VJJ A;  1OGM X;  4YEL A;  5AMV A;  4YZQ A;  1O8G A;  2O17 A;  4URR A;  4W8Q A;  2X6X A;  3ZPP A;  3B90 A;  4W8R A;  4XR6 A;  3VSU A;  3WWG A;  2NTP A;  2O04 A;  4OJP A;  4NK8 A;  3VMW A;  2VBM A;  2UVE A;  4OJ6 A;  2NTB A;  3SUC A;  4Z06 A;  1IDK A;  2VJI A;  4XOR A;  4XMY A;  2UVF A;  3VMV A;  3GQ8 A;  2QX3 A;  2X6W A;  3KRG A;  4C2L A;  4HWV A;  2PYG A;  1RU4 A;  4XL9 A;  1CZF A;  1X0C A;  4MR0 A;  2INV A;  1IB4 A;  4Z03 A;  1PLU A;  4U4B A;  1NHC A;  1O8E A;  1OFL A;  4XLH A;  1KCC A;  1AIR A;

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similar chains in the Genus database (?% sequence similarity)

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2EWEA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations