2NT9A

Crystal structure of pectin methylesterase d178a mutant in complex with hexasaccharide iv
Total Genus 127

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
127
sequence length
342
structure length
342
Chain Sequence
ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTITRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQATLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGATVSKDRRQLTDAQAAEYTQSKVLGDWTPTLP
5010015020025030030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (30-32)TI2 (36-39)S2 (59-63)AH1 (45-51)TI3 (85-88)S3 (66-69)TI6 (101-104)S6 (89-93)S4 (72-74)TIV3 (83-86)S5 (79-83)S8 (123-131)AH2 (135-140)TI5 (96-99)TI7 (142-145)TI8 (145-148)3H1 (110-112)TVIII1 (113-116)S7 (115-117)TIV9 (197-200)TIV4 (119-122)TVIII2 (155-158)O2 (133-135)S9 (157-159)S11 (180-182)TI9 (160-163)S13 (193-195)TIV5 (149-152)S10 (166-174)TII1 (176-179)TI17 (332-335)S12 (187-190)TIV6 (163-166)O3 (192-212)TIV10 (209-212)S16 (213-216)TIV8 (189-192)S17 (229-234)S21 (272-275)TI11 (237-240)S14 (198-203)S15 (207-210)S20 (263-266)S18 (244-247)S25 (300-303)TII3 (259-262)S28 (324-328)TII2 (223-226)TI13 (275-278)TIV11 (246-249)TI12 (255-258)S19 (250-253)TI14 (282-285)S26 (306-309)TI16 (310-313)S22 (278-281)TIV12 (291-294)S23 (288-292)S24 (295-296)S27 (315-318)TI15 (297-300)3H2 (320-322)TIV1 (38-41)TIV2 (76-79)TIV13 (327-330)TI10 (219-222)TI1 (35-38)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Erwinia chrysanthemi
publication title Molecular basis of the activity of the phytopathogen pectin methylesterase.
pubmed doi rcsb
molecule keywords Pectinesterase A
total genus 127
structure length 342
sequence length 342
chains with identical sequence B
ec nomenclature ec 3.1.1.11: Pectinesterase.
pdb deposition date 2006-11-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01095 Pectinesterase Pectinesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2nt9A00
3ZSCA 4YEJA 1PXZA 5AMVA 2NT6A 2QY1A 3B8YA 2NTBA 4OZYA 4AVZA 4EW9A 1KCCA 2O04A 4OJ6A 2X6XA 4I84A 3B90A 4XLCA 2NT9A 3LMWA 1IB4A 4NK8A 1IDJA 3SUCA 3FY3A 3GQ9A 1XG2A 1VBLA 1O8LA 2PECA 4OZZA 4C2LA 3WWGA 2INUA 2O0VA 3VSTA 3KRGA 1X0CA 2NTPA 4XLAA 2Z8GA 1O88A 4OJ5A 4U4BA 1QJVA 4U49A 2ODLA 4XKWA 4XM3A 1QCXA 3GQ8A 3JURA 1WMRA 4MXNA 2IQ7A 1O8EA 4XR6A 2O0WA 1BHEA 2X6WA 2NTQA 4W8SA 2VJJA 1JRGA 1O8HA 4MR0A 1NHCA 1GQ8A 2VBEA 1O8KA 4W8QA 4XNFA 4Z05A 4XLEA 1AIRA 3B4NA 4OJOA 1H80A 4XN0A 2X6YA 2O1DA 1IDKA 3UW0A 2PYGA 3GQAA 4XKVA 2VJIA 4XONA 2QX3A 1RWRA 2EWEA 2QXZA 1OFMA 4OJLA 2PYHA 1BN8A 3GRHA 1PLUA 3T9GA 3EQOA 4YZAA 1DBOA 2UVFA 1IA5A 2UVEA 2INVA 4URRA 2BSPA 1PE9A 2X3HA 4XORA 5C1EA 1KCDA 3ZPPA 4Z03A 4XOTA 4W8RA 1OGMX 4XMYA 3VSUA 1OFLA 1HG8A 4XQFA 2NSTA 4XN3A 2NZMA 2X85A 5C1CA 1JTAA 3GQ7A 1DBGA 1RMGA 1OGOX 4W8TA 1O8GA 4Z06A 1O8IA 4XLFA 3VSVA 1O8FA 4XLHA 1O8JA 1EE6A 2VBMA 4OJPA 3VMWA 1OOCA 4YZXA 2NSPA 1O8MA 4XOPA 3EQNA 4XL9A 3VMVA 1O8DA 1K5CA 1KTWA 4YZQA 4NK6A 4YZ0A 4PMHA 2VBKA 1CZFA 4YELA 4HWVA 1RU4A 2O17A
chains in the Genus database with same CATH superfamily
2XT4A 2F3LA 2IOUG 3ZSCA 1KQ5A 1OFDA 4YEJA 1PXZA 5AMVA 2NT6A 2QY1A 3B8YA 1LLWA 2NTBA 4OZYA 3SQVA 1EA0A 4AVZA 4EW9A 4YEIA 2XTXA 1KCCA 2O04A 3PSZA 1TYWA 4OJ6A 2X6XA 4I84A 1L1IA 1QRCA 3B90A 1K4ZA 2NT9A 2QYUA 3DU1X 3LMWA 4XLCA 3NB2A 1IB4A 4NK8A 1IDJA 3SUCA 3FY3A 3GQ9A 1XG2A 1VBLA 1O8LA 2PECA 3BH7B 3LJYA 4OZZA 5DNSA 2XC1A 4C2LA 3P4GA 2INUA 2J8IA 3WWGA 2O0VA 3VSTA 3KRGA 1X0CA 2NTPA 4XLAA 2Z8GA 1O88A 4OJ5A 4U4BA 1QJVA 2BM7A 2ODLA 4U49A 4XKWA 4YC5A 4XM3A 3SYJA 4YFOA 1QCXA 1DABA 2VFPA 3GQ8A 3JURA 3JX8A 1TYXA 1WMRA 4MXNA 2IQ7A 1O8EA 4OM9A 4XR6A 3SY2A 2O0WA 1BHEA 2X6WA 2NTQA 4W8SA 3H09A 3RIQA 2VJJA 1JRGA 1O8HA 2BM6A 3N90A 4MR0A 1GQ8A 2VBEA 3NAWA 4YCQA 1TYUA 1NHCA 1O8KA 4W8QA 4XNFA 1QA1A 4Z05A 2V5IA 4XLEA 1AIRA 3B4NA 4OJOA 1TYVA 3ML3A 1H80A 4XN0A 2X6YA 1QRBA 2O1DA 1IDKA 3BH6B 3UW0A 2PYGA 3GQAA 3AK5A 4XKVA 2VJIA 4XONA 2QX3A 1RWRA 2EWEA 2QXZA 1OFMA 4OJLA 2PYHA 1BN8A 3GRHA 1TSPA 1PLUA 3T9GA 3EQOA 4KH3A 1QA3A 1WXRA 4YZAA 1DBOA 2UVFA 1IA5A 2UVEA 1K8FA 2INVA 2O6WA 2QZAA 4URRA 2BSPA 2W7ZA 1PE9A 2X3HA 1HF2A 4XORA 2G0YA 5C1EA 1CLWA 3ZPPA 1KCDA 5JMCB 4Z03A 4XOTA 4W8RA 2B0RA 1OGMX 4XMYA 3VSUA 1OFLA 1HG8A 2VFQA 4XQFA 4V02C 2XTYA 2NSTA 3PETA 4XN3A 2J8KA 2NZMA 1EZGA 2X85A 5C1CA 1JTAA 2BM4A 3GQ7A 2BX6A 1DBGA 1RMGA 3N6ZA 4JRAC 1OGOX 4W8TA 1O8GA 4Z06A 1O8IA 4XLFA 3VSVA 1QA2A 1O8FA 2VFMA 4XLHA 1O8JA 4OPWA 1EE6A 2VBMA 4OJPA 1LLZA 2BM5A 5JLVC 3VMWA 1LM1A 3LYCA 3PSSA 1OOCA 2XT2A 3SZEA 4YZXA 1OFEA 2NSPA 2XTWA 1O8MA 3TH0A 2YUHA 4XOPA 1QQ1A 2VFOA 3EQNA 4XL9A 3VMVA 1O8DA 1K5CA 1KTWA 4YZQA 2VFNA 4NK6A 4YZ0A 4PMHA 2VBKA 1CZFA 4YDTA 4YELA 4HWVA 1RU4A 2O17A
chains in the Genus database with same CATH topology
3ZSCA 4YEJA 1PXZA 5AMVA 2NT6A 2QY1A 3B8YA 2NTBA 4OZYA 4AVZA 4EW9A 1KCCA 2O04A 4OJ6A 2X6XA 4I84A 3B90A 4XLCA 2NT9A 3LMWA 1IB4A 4NK8A 1IDJA 3SUCA 3FY3A 3GQ9A 1XG2A 1VBLA 1O8LA 2PECA 4OZZA 4C2LA 3WWGA 2INUA 2O0VA 3VSTA 3KRGA 1X0CA 2NTPA 4XLAA 2Z8GA 1O88A 4OJ5A 4U4BA 1QJVA 4U49A 2ODLA 4XKWA 4XM3A 1QCXA 3GQ8A 3JURA 1WMRA 4MXNA 2IQ7A 1O8EA 4XR6A 2O0WA 1BHEA 2X6WA 2NTQA 4W8SA 2VJJA 1JRGA 1O8HA 4MR0A 1NHCA 1GQ8A 2VBEA 1O8KA 4W8QA 4XNFA 4Z05A 4XLEA 1AIRA 3B4NA 4OJOA 1H80A 4XN0A 2X6YA 2O1DA 1IDKA 3UW0A 2PYGA 3GQAA 4XKVA 2VJIA 4XONA 2QX3A 1RWRA 2EWEA 2QXZA 1OFMA 4OJLA 2PYHA 1BN8A 3GRHA 1PLUA 3T9GA 3EQOA 4YZAA 1DBOA 2UVFA 1IA5A 2UVEA 2INVA 4URRA 2BSPA 1PE9A 2X3HA 4XORA 5C1EA 1KCDA 3ZPPA 4Z03A 4XOTA 4W8RA 1OGMX 4XMYA 3VSUA 1OFLA 1HG8A 4XQFA 2NSTA 4XN3A 2NZMA 2X85A 5C1CA 1JTAA 3GQ7A 1DBGA 1RMGA 1OGOX 4W8TA 1O8GA 4Z06A 1O8IA 4XLFA 3VSVA 1O8FA 4XLHA 1O8JA 1EE6A 2VBMA 4OJPA 3VMWA 1OOCA 4YZXA 2NSPA 1O8MA 4XOPA 3EQNA 4XL9A 3VMVA 1O8DA 1K5CA 1KTWA 4YZQA 4NK6A 4YZ0A 4PMHA 2VBKA 1CZFA 4YELA 4HWVA 1RU4A 2O17A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZSC A;  4YEJ A;  1PXZ A;  5AMV A;  2NT6 A;  2QY1 A;  3B8Y A;  2NTB A;  4OZY A;  4AVZ A;  4EW9 A;  1KCC A;  2O04 A;  4OJ6 A;  2X6X A;  4I84 A;  3B90 A;  4XLC A;  2NT9 A;  3LMW A;  1IB4 A;  4NK8 A;  1IDJ A;  3SUC A;  3FY3 A;  3GQ9 A;  1XG2 A;  1VBL A;  1O8L A;  2PEC A;  4OZZ A;  4C2L A;  3WWG A;  2INU A;  2O0V A;  3VST A;  3KRG A;  1X0C A;  2NTP A;  4XLA A;  2Z8G A;  1O88 A;  4OJ5 A;  4U4B A;  1QJV A;  4U49 A;  2ODL A;  4XKW A;  4XM3 A;  1QCX A;  3GQ8 A;  3JUR A;  1WMR A;  4MXN A;  2IQ7 A;  1O8E A;  4XR6 A;  2O0W A;  1BHE A;  2X6W A;  2NTQ A;  4W8S A;  2VJJ A;  1JRG A;  1O8H A;  4MR0 A;  1NHC A;  1GQ8 A;  2VBE A;  1O8K A;  4W8Q A;  4XNF A;  4Z05 A;  4XLE A;  1AIR A;  3B4N A;  4OJO A;  1H80 A;  4XN0 A;  2X6Y A;  2O1D A;  1IDK A;  3UW0 A;  2PYG A;  3GQA A;  4XKV A;  2VJI A;  4XON A;  2QX3 A;  1RWR A;  2EWE A;  2QXZ A;  1OFM A;  4OJL A;  2PYH A;  1BN8 A;  3GRH A;  1PLU A;  3T9G A;  3EQO A;  4YZA A;  1DBO A;  2UVF A;  1IA5 A;  2UVE A;  2INV A;  4URR A;  2BSP A;  1PE9 A;  2X3H A;  4XOR A;  5C1E A;  1KCD A;  3ZPP A;  4Z03 A;  4XOT A;  4W8R A;  1OGM X;  4XMY A;  3VSU A;  1OFL A;  1HG8 A;  4XQF A;  2NST A;  4XN3 A;  2NZM A;  2X85 A;  5C1C A;  1JTA A;  3GQ7 A;  1DBG A;  1RMG A;  1OGO X;  4W8T A;  1O8G A;  4Z06 A;  1O8I A;  4XLF A;  3VSV A;  1O8F A;  4XLH A;  1O8J A;  1EE6 A;  2VBM A;  4OJP A;  3VMW A;  1OOC A;  4YZX A;  2NSP A;  1O8M A;  4XOP A;  3EQN A;  4XL9 A;  3VMV A;  1O8D A;  1K5C A;  1KTW A;  4YZQ A;  4NK6 A;  4YZ0 A;  4PMH A;  2VBK A;  1CZF A;  4YEL A;  4HWV A;  1RU4 A;  2O17 A; 
#chains in the Genus database with same CATH topology
 2XT4 A;  2F3L A;  2IOU G;  3ZSC A;  1KQ5 A;  1OFD A;  4YEJ A;  1PXZ A;  5AMV A;  2NT6 A;  2QY1 A;  3B8Y A;  1LLW A;  2NTB A;  4OZY A;  3SQV A;  1EA0 A;  4AVZ A;  4EW9 A;  4YEI A;  2XTX A;  1KCC A;  2O04 A;  3PSZ A;  1TYW A;  4OJ6 A;  2X6X A;  4I84 A;  1L1I A;  1QRC A;  3B90 A;  1K4Z A;  2NT9 A;  2QYU A;  3DU1 X;  3LMW A;  4XLC A;  3NB2 A;  1IB4 A;  4NK8 A;  1IDJ A;  3SUC A;  3FY3 A;  3GQ9 A;  1XG2 A;  1VBL A;  1O8L A;  2PEC A;  3BH7 B;  3LJY A;  4OZZ A;  5DNS A;  2XC1 A;  4C2L A;  3P4G A;  2INU A;  2J8I A;  3WWG A;  2O0V A;  3VST A;  3KRG A;  1X0C A;  2NTP A;  4XLA A;  2Z8G A;  1O88 A;  4OJ5 A;  4U4B A;  1QJV A;  2BM7 A;  2ODL A;  4U49 A;  4XKW A;  4YC5 A;  4XM3 A;  3SYJ A;  4YFO A;  1QCX A;  1DAB A;  2VFP A;  3GQ8 A;  3JUR A;  3JX8 A;  1TYX A;  1WMR A;  4MXN A;  2IQ7 A;  1O8E A;  4OM9 A;  4XR6 A;  3SY2 A;  2O0W A;  1BHE A;  2X6W A;  2NTQ A;  4W8S A;  3H09 A;  3RIQ A;  2VJJ A;  1JRG A;  1O8H A;  2BM6 A;  3N90 A;  4MR0 A;  1GQ8 A;  2VBE A;  3NAW A;  4YCQ A;  1TYU A;  1NHC A;  1O8K A;  4W8Q A;  4XNF A;  1QA1 A;  4Z05 A;  2V5I A;  4XLE A;  1AIR A;  3B4N A;  4OJO A;  1TYV A;  3ML3 A;  1H80 A;  4XN0 A;  2X6Y A;  1QRB A;  2O1D A;  1IDK A;  3BH6 B;  3UW0 A;  2PYG A;  3GQA A;  3AK5 A;  4XKV A;  2VJI A;  4XON A;  2QX3 A;  1RWR A;  2EWE A;  2QXZ A;  1OFM A;  4OJL A;  2PYH A;  1BN8 A;  3GRH A;  1TSP A;  1PLU A;  3T9G A;  3EQO A;  4KH3 A;  1QA3 A;  1WXR A;  4YZA A;  1DBO A;  2UVF A;  1IA5 A;  2UVE A;  1K8F A;  2INV A;  2O6W A;  2QZA A;  4URR A;  2BSP A;  2W7Z A;  1PE9 A;  2X3H A;  1HF2 A;  4XOR A;  2G0Y A;  5C1E A;  1CLW A;  3ZPP A;  1KCD A;  5JMC B;  4Z03 A;  4XOT A;  4W8R A;  2B0R A;  1OGM X;  4XMY A;  3VSU A;  1OFL A;  1HG8 A;  2VFQ A;  4XQF A;  4V02 C;  2XTY A;  2NST A;  3PET A;  4XN3 A;  2J8K A;  2NZM A;  1EZG A;  2X85 A;  5C1C A;  1JTA A;  2BM4 A;  3GQ7 A;  2BX6 A;  1DBG A;  1RMG A;  3N6Z A;  4JRA C;  1OGO X;  4W8T A;  1O8G A;  4Z06 A;  1O8I A;  4XLF A;  3VSV A;  1QA2 A;  1O8F A;  2VFM A;  4XLH A;  1O8J A;  4OPW A;  1EE6 A;  2VBM A;  4OJP A;  1LLZ A;  2BM5 A;  5JLV C;  3VMW A;  1LM1 A;  3LYC A;  3PSS A;  1OOC A;  2XT2 A;  3SZE A;  4YZX A;  1OFE A;  2NSP A;  2XTW A;  1O8M A;  3TH0 A;  2YUH A;  4XOP A;  1QQ1 A;  2VFO A;  3EQN A;  4XL9 A;  3VMV A;  1O8D A;  1K5C A;  1KTW A;  4YZQ A;  2VFN A;  4NK6 A;  4YZ0 A;  4PMH A;  2VBK A;  1CZF A;  4YDT A;  4YEL A;  4HWV A;  1RU4 A;  2O17 A; 
#chains in the Genus database with same CATH homology
 3ZSC A;  4YEJ A;  1PXZ A;  5AMV A;  2NT6 A;  2QY1 A;  3B8Y A;  2NTB A;  4OZY A;  4AVZ A;  4EW9 A;  1KCC A;  2O04 A;  4OJ6 A;  2X6X A;  4I84 A;  3B90 A;  4XLC A;  2NT9 A;  3LMW A;  1IB4 A;  4NK8 A;  1IDJ A;  3SUC A;  3FY3 A;  3GQ9 A;  1XG2 A;  1VBL A;  1O8L A;  2PEC A;  4OZZ A;  4C2L A;  3WWG A;  2INU A;  2O0V A;  3VST A;  3KRG A;  1X0C A;  2NTP A;  4XLA A;  2Z8G A;  1O88 A;  4OJ5 A;  4U4B A;  1QJV A;  4U49 A;  2ODL A;  4XKW A;  4XM3 A;  1QCX A;  3GQ8 A;  3JUR A;  1WMR A;  4MXN A;  2IQ7 A;  1O8E A;  4XR6 A;  2O0W A;  1BHE A;  2X6W A;  2NTQ A;  4W8S A;  2VJJ A;  1JRG A;  1O8H A;  4MR0 A;  1NHC A;  1GQ8 A;  2VBE A;  1O8K A;  4W8Q A;  4XNF A;  4Z05 A;  4XLE A;  1AIR A;  3B4N A;  4OJO A;  1H80 A;  4XN0 A;  2X6Y A;  2O1D A;  1IDK A;  3UW0 A;  2PYG A;  3GQA A;  4XKV A;  2VJI A;  4XON A;  2QX3 A;  1RWR A;  2EWE A;  2QXZ A;  1OFM A;  4OJL A;  2PYH A;  1BN8 A;  3GRH A;  1PLU A;  3T9G A;  3EQO A;  4YZA A;  1DBO A;  2UVF A;  1IA5 A;  2UVE A;  2INV A;  4URR A;  2BSP A;  1PE9 A;  2X3H A;  4XOR A;  5C1E A;  1KCD A;  3ZPP A;  4Z03 A;  4XOT A;  4W8R A;  1OGM X;  4XMY A;  3VSU A;  1OFL A;  1HG8 A;  4XQF A;  2NST A;  4XN3 A;  2NZM A;  2X85 A;  5C1C A;  1JTA A;  3GQ7 A;  1DBG A;  1RMG A;  1OGO X;  4W8T A;  1O8G A;  4Z06 A;  1O8I A;  4XLF A;  3VSV A;  1O8F A;  4XLH A;  1O8J A;  1EE6 A;  2VBM A;  4OJP A;  3VMW A;  1OOC A;  4YZX A;  2NSP A;  1O8M A;  4XOP A;  3EQN A;  4XL9 A;  3VMV A;  1O8D A;  1K5C A;  1KTW A;  4YZQ A;  4NK6 A;  4YZ0 A;  4PMH A;  2VBK A;  1CZF A;  4YEL A;  4HWV A;  1RU4 A;  2O17 A; 
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