2O04A

Pectate lyase bound to hexasaccharide compound ii
Total Genus 160
50100150200250300350020406080100120140160
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
source organism Bacillus subtilis
publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
pubmed doi rcsb
molecule keywords Pectate lyase
total genus 160
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2o04A00
4U4BA 4XMYA 4W8QA 3VMVA 1IDKA 3B90A 4XOTA 1EE6A 2NT6A 1KTWA 4Z06A 1PLUA 1O8DA 1BHEA 2VBEA 4XORA 4YZXA 1PE9A 1O8FA 4OJLA 4EW9A 1RMGA 1WMRA 4Z05A 4XLAA 3T9GA 2NTPA 1O8LA 4YEJA 1X0CA 1OFMA 2NSTA 3GQAA 4U49A 3GRHA 4XLHA 2X6XA 1JRGA 1H80A 2NT9A 2PYGA 3EQOA 1O8KA 2NTBA 1OGOX 2QX3A 2X3HA 4OZYA 3ZSCA 1O8MA 4XM3A 4AVZA 3VSVA 1K5CA 2PECA 4XQFA 3FY3A 4I84A 4YZAA 2INUA 4NK8A 4W8TA 3SUCA 2X6YA 5C1CA 1XG2A 3VMWA 2NSPA 2X85A 1O8GA 4YELA 2QY1A 4Z03A 4OJ6A 1O8JA 4C2LA 1IA5A 4W8RA 4XKWA 3WWGA 5AMVA 2UVEA 2IQ7A 3GQ9A 5C1EA 3VSTA 4XN3A 1AIRA 2INVA 3VSUA 3LMWA 1OOCA 4OJPA 4XLFA 4XLEA 1GQ8A 4PMHA 1QCXA 2VJJA 1IB4A 1RU4A 3B8YA 2O0VA 2X6WA 3KRGA 4MR0A 4NK6A 4URRA 4XL9A 4XONA 1NHCA 4W8SA 2O04A 2Z8GA 4XR6A 2VBKA 3GQ7A 4XLCA 1PXZA 1O8EA 1JTAA 1QJVA 4OJOA 1BN8A 3JURA 2NTQA 2UVFA 4HWVA 1O88A 1DBGA 1OFLA 2O17A 3UW0A 4YZ0A 1HG8A 3EQNA 3ZPPA 4MXNA 1OGMX 2ODLA 1RWRA 4XOPA 4XNFA 1VBLA 2O0WA 1KCCA 4OZZA 2NZMA 2VBMA 4XN0A 4OJ5A 3B4NA 2EWEA 4XKVA 2BSPA 1CZFA 1IDJA 1KCDA 2QXZA 3GQ8A 2PYHA 2O1DA 1DBOA 2VJIA 1O8HA 1O8IA 4YZQA
chains in the Genus database with same CATH superfamily
4U4BA 4XMYA 4W8QA 3VMVA 2O6WA 1IDKA 3BH6B 3B90A 4XOTA 1EE6A 2NT6A 2BX6A 1KTWA 4Z06A 1PLUA 4YC5A 1O8DA 1BHEA 2VBEA 4XORA 4YZXA 1PE9A 1O8FA 4OJLA 4EW9A 1RMGA 1WMRA 3ML3A 1K8FA 4JRAC 4XLAA 4Z05A 1LLZA 1O8LA 2NTPA 3T9GA 3LYCA 4YEJA 1X0CA 1OFMA 2NSTA 3GQAA 3H09A 4U49A 2BM7A 3GRHA 4XLHA 2VFQA 4OM9A 2X6XA 1JRGA 1H80A 1LM1A 2NT9A 2PYGA 4YEIA 3EQOA 1O8KA 2NTBA 1OGOX 2QX3A 2X3HA 1HF2A 3PSZA 4OZYA 3ZSCA 1O8MA 4XM3A 4YCQA 4AVZA 3VSVA 1LLWA 5JLVC 1K5CA 2PECA 4XQFA 1QA3A 3FY3A 2QYUA 4I84A 2XC1A 4YZAA 2INUA 4NK8A 3RIQA 4W8TA 3SUCA 2J8IA 2X6YA 5C1CA 1XG2A 3VMWA 1WXRA 2NSPA 2X85A 1O8GA 2YUHA 1TYXA 2VFNA 4YELA 3SQVA 2QY1A 3DU1X 4OJ6A 4Z03A 1O8JA 2VFPA 2XTWA 4C2LA 2VFMA 1QQ1A 1IA5A 4W8RA 3NAWA 3PSSA 4XKWA 3WWGA 4OPWA 2F3LA 3N90A 2UVEA 5AMVA 2IQ7A 3SY2A 3GQ9A 1CLWA 5C1EA 5JMCB 2V5IA 3VSTA 2IOUG 1TYWA 1AIRA 4XN3A 3PETA 2INVA 3VSUA 3LMWA 2QZAA 1OOCA 4V02C 1QRBA 4OJPA 4XLFA 2VFOA 1GQ8A 2W7ZA 4XLEA 4PMHA 2XT4A 1QCXA 2VJJA 1QA2A 3AK5A 3SYJA 1IB4A 1RU4A 3B8YA 5DNSA 2O0VA 2X6WA 3KRGA 1TSPA 4MR0A 4NK6A 4URRA 4XL9A 4XONA 3NB2A 3P4GA 4W8SA 2O04A 2Z8GA 3N6ZA 1NHCA 4XR6A 2VBKA 3GQ7A 4KH3A 3BH7B 1K4ZA 2XTYA 4XLCA 1PXZA 1QA1A 1TYUA 3SZEA 3JX8A 1TYVA 1O8EA 1JTAA 1QJVA 2XT2A 4OJOA 1BN8A 3JURA 1OFDA 1EA0A 2NTQA 2UVFA 2BM6A 2B0RA 2BM5A 4HWVA 3TH0A 1O88A 1DBGA 1OFLA 4YDTA 2O17A 3UW0A 2XTXA 1HG8A 3EQNA 4YZ0A 3ZPPA 4MXNA 1OGMX 1DABA 2ODLA 1RWRA 4XOPA 1EZGA 4XNFA 1L1IA 1VBLA 2BM4A 2O0WA 1KCCA 4OZZA 2NZMA 2VBMA 4XN0A 2J8KA 2G0YA 4OJ5A 1KQ5A 3B4NA 2EWEA 4XKVA 2BSPA 1CZFA 1OFEA 3LJYA 1IDJA 1KCDA 4YFOA 2QXZA 1QRCA 3GQ8A 2PYHA 2O1DA 1DBOA 2VJIA 1O8HA 1O8IA 4YZQA
chains in the Genus database with same CATH topology
4U4BA 4XMYA 4W8QA 3VMVA 1IDKA 3B90A 4XOTA 1EE6A 2NT6A 1KTWA 4Z06A 1PLUA 1O8DA 1BHEA 2VBEA 4XORA 4YZXA 1PE9A 1O8FA 4OJLA 4EW9A 1RMGA 1WMRA 4Z05A 4XLAA 3T9GA 2NTPA 1O8LA 4YEJA 1X0CA 1OFMA 2NSTA 3GQAA 4U49A 3GRHA 4XLHA 2X6XA 1JRGA 1H80A 2NT9A 2PYGA 3EQOA 1O8KA 2NTBA 1OGOX 2QX3A 2X3HA 4OZYA 3ZSCA 1O8MA 4XM3A 4AVZA 3VSVA 1K5CA 2PECA 4XQFA 3FY3A 4I84A 4YZAA 2INUA 4NK8A 4W8TA 3SUCA 2X6YA 5C1CA 1XG2A 3VMWA 2NSPA 2X85A 1O8GA 4YELA 2QY1A 4Z03A 4OJ6A 1O8JA 4C2LA 1IA5A 4W8RA 4XKWA 3WWGA 5AMVA 2UVEA 2IQ7A 3GQ9A 5C1EA 3VSTA 4XN3A 1AIRA 2INVA 3VSUA 3LMWA 1OOCA 4OJPA 4XLFA 4XLEA 1GQ8A 4PMHA 1QCXA 2VJJA 1IB4A 1RU4A 3B8YA 2O0VA 2X6WA 3KRGA 4MR0A 4NK6A 4URRA 4XL9A 4XONA 1NHCA 4W8SA 2O04A 2Z8GA 4XR6A 2VBKA 3GQ7A 4XLCA 1PXZA 1O8EA 1JTAA 1QJVA 4OJOA 1BN8A 3JURA 2NTQA 2UVFA 4HWVA 1O88A 1DBGA 1OFLA 2O17A 3UW0A 4YZ0A 1HG8A 3EQNA 3ZPPA 4MXNA 1OGMX 2ODLA 1RWRA 4XOPA 4XNFA 1VBLA 2O0WA 1KCCA 4OZZA 2NZMA 2VBMA 4XN0A 4OJ5A 3B4NA 2EWEA 4XKVA 2BSPA 1CZFA 1IDJA 1KCDA 2QXZA 3GQ8A 2PYHA 2O1DA 1DBOA 2VJIA 1O8HA 1O8IA 4YZQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4U4B A;  4XMY A;  4W8Q A;  3VMV A;  1IDK A;  3B90 A;  4XOT A;  1EE6 A;  2NT6 A;  1KTW A;  4Z06 A;  1PLU A;  1O8D A;  1BHE A;  2VBE A;  4XOR A;  4YZX A;  1PE9 A;  1O8F A;  4OJL A;  4EW9 A;  1RMG A;  1WMR A;  4Z05 A;  4XLA A;  3T9G A;  2NTP A;  1O8L A;  4YEJ A;  1X0C A;  1OFM A;  2NST A;  3GQA A;  4U49 A;  3GRH A;  4XLH A;  2X6X A;  1JRG A;  1H80 A;  2NT9 A;  2PYG A;  3EQO A;  1O8K A;  2NTB A;  1OGO X;  2QX3 A;  2X3H A;  4OZY A;  3ZSC A;  1O8M A;  4XM3 A;  4AVZ A;  3VSV A;  1K5C A;  2PEC A;  4XQF A;  3FY3 A;  4I84 A;  4YZA A;  2INU A;  4NK8 A;  4W8T A;  3SUC A;  2X6Y A;  5C1C A;  1XG2 A;  3VMW A;  2NSP A;  2X85 A;  1O8G A;  4YEL A;  2QY1 A;  4Z03 A;  4OJ6 A;  1O8J A;  4C2L A;  1IA5 A;  4W8R A;  4XKW A;  3WWG A;  5AMV A;  2UVE A;  2IQ7 A;  3GQ9 A;  5C1E A;  3VST A;  4XN3 A;  1AIR A;  2INV A;  3VSU A;  3LMW A;  1OOC A;  4OJP A;  4XLF A;  4XLE A;  1GQ8 A;  4PMH A;  1QCX A;  2VJJ A;  1IB4 A;  1RU4 A;  3B8Y A;  2O0V A;  2X6W A;  3KRG A;  4MR0 A;  4NK6 A;  4URR A;  4XL9 A;  4XON A;  1NHC A;  4W8S A;  2O04 A;  2Z8G A;  4XR6 A;  2VBK A;  3GQ7 A;  4XLC A;  1PXZ A;  1O8E A;  1JTA A;  1QJV A;  4OJO A;  1BN8 A;  3JUR A;  2NTQ A;  2UVF A;  4HWV A;  1O88 A;  1DBG A;  1OFL A;  2O17 A;  3UW0 A;  4YZ0 A;  1HG8 A;  3EQN A;  3ZPP A;  4MXN A;  1OGM X;  2ODL A;  1RWR A;  4XOP A;  4XNF A;  1VBL A;  2O0W A;  1KCC A;  4OZZ A;  2NZM A;  2VBM A;  4XN0 A;  4OJ5 A;  3B4N A;  2EWE A;  4XKV A;  2BSP A;  1CZF A;  1IDJ A;  1KCD A;  2QXZ A;  3GQ8 A;  2PYH A;  2O1D A;  1DBO A;  2VJI A;  1O8H A;  1O8I A;  4YZQ A; 
#chains in the Genus database with same CATH topology
 4U4B A;  4XMY A;  4W8Q A;  3VMV A;  2O6W A;  1IDK A;  3BH6 B;  3B90 A;  4XOT A;  1EE6 A;  2NT6 A;  2BX6 A;  1KTW A;  4Z06 A;  1PLU A;  4YC5 A;  1O8D A;  1BHE A;  2VBE A;  4XOR A;  4YZX A;  1PE9 A;  1O8F A;  4OJL A;  4EW9 A;  1RMG A;  1WMR A;  3ML3 A;  1K8F A;  4JRA C;  4XLA A;  4Z05 A;  1LLZ A;  1O8L A;  2NTP A;  3T9G A;  3LYC A;  4YEJ A;  1X0C A;  1OFM A;  2NST A;  3GQA A;  3H09 A;  4U49 A;  2BM7 A;  3GRH A;  4XLH A;  2VFQ A;  4OM9 A;  2X6X A;  1JRG A;  1H80 A;  1LM1 A;  2NT9 A;  2PYG A;  4YEI A;  3EQO A;  1O8K A;  2NTB A;  1OGO X;  2QX3 A;  2X3H A;  1HF2 A;  3PSZ A;  4OZY A;  3ZSC A;  1O8M A;  4XM3 A;  4YCQ A;  4AVZ A;  3VSV A;  1LLW A;  5JLV C;  1K5C A;  2PEC A;  4XQF A;  1QA3 A;  3FY3 A;  2QYU A;  4I84 A;  2XC1 A;  4YZA A;  2INU A;  4NK8 A;  3RIQ A;  4W8T A;  3SUC A;  2J8I A;  2X6Y A;  5C1C A;  1XG2 A;  3VMW A;  1WXR A;  2NSP A;  2X85 A;  1O8G A;  2YUH A;  1TYX A;  2VFN A;  4YEL A;  3SQV A;  2QY1 A;  3DU1 X;  4OJ6 A;  4Z03 A;  1O8J A;  2VFP A;  2XTW A;  4C2L A;  2VFM A;  1QQ1 A;  1IA5 A;  4W8R A;  3NAW A;  3PSS A;  4XKW A;  3WWG A;  4OPW A;  2F3L A;  3N90 A;  2UVE A;  5AMV A;  2IQ7 A;  3SY2 A;  3GQ9 A;  1CLW A;  5C1E A;  5JMC B;  2V5I A;  3VST A;  2IOU G;  1TYW A;  1AIR A;  4XN3 A;  3PET A;  2INV A;  3VSU A;  3LMW A;  2QZA A;  1OOC A;  4V02 C;  1QRB A;  4OJP A;  4XLF A;  2VFO A;  1GQ8 A;  2W7Z A;  4XLE A;  4PMH A;  2XT4 A;  1QCX A;  2VJJ A;  1QA2 A;  3AK5 A;  3SYJ A;  1IB4 A;  1RU4 A;  3B8Y A;  5DNS A;  2O0V A;  2X6W A;  3KRG A;  1TSP A;  4MR0 A;  4NK6 A;  4URR A;  4XL9 A;  4XON A;  3NB2 A;  3P4G A;  4W8S A;  2O04 A;  2Z8G A;  3N6Z A;  1NHC A;  4XR6 A;  2VBK A;  3GQ7 A;  4KH3 A;  3BH7 B;  1K4Z A;  2XTY A;  4XLC A;  1PXZ A;  1QA1 A;  1TYU A;  3SZE A;  3JX8 A;  1TYV A;  1O8E A;  1JTA A;  1QJV A;  2XT2 A;  4OJO A;  1BN8 A;  3JUR A;  1OFD A;  1EA0 A;  2NTQ A;  2UVF A;  2BM6 A;  2B0R A;  2BM5 A;  4HWV A;  3TH0 A;  1O88 A;  1DBG A;  1OFL A;  4YDT A;  2O17 A;  3UW0 A;  2XTX A;  1HG8 A;  3EQN A;  4YZ0 A;  3ZPP A;  4MXN A;  1OGM X;  1DAB A;  2ODL A;  1RWR A;  4XOP A;  1EZG A;  4XNF A;  1L1I A;  1VBL A;  2BM4 A;  2O0W A;  1KCC A;  4OZZ A;  2NZM A;  2VBM A;  4XN0 A;  2J8K A;  2G0Y A;  4OJ5 A;  1KQ5 A;  3B4N A;  2EWE A;  4XKV A;  2BSP A;  1CZF A;  1OFE A;  3LJY A;  1IDJ A;  1KCD A;  4YFO A;  2QXZ A;  1QRC A;  3GQ8 A;  2PYH A;  2O1D A;  1DBO A;  2VJI A;  1O8H A;  1O8I A;  4YZQ A; 
#chains in the Genus database with same CATH homology
 4U4B A;  4XMY A;  4W8Q A;  3VMV A;  1IDK A;  3B90 A;  4XOT A;  1EE6 A;  2NT6 A;  1KTW A;  4Z06 A;  1PLU A;  1O8D A;  1BHE A;  2VBE A;  4XOR A;  4YZX A;  1PE9 A;  1O8F A;  4OJL A;  4EW9 A;  1RMG A;  1WMR A;  4Z05 A;  4XLA A;  3T9G A;  2NTP A;  1O8L A;  4YEJ A;  1X0C A;  1OFM A;  2NST A;  3GQA A;  4U49 A;  3GRH A;  4XLH A;  2X6X A;  1JRG A;  1H80 A;  2NT9 A;  2PYG A;  3EQO A;  1O8K A;  2NTB A;  1OGO X;  2QX3 A;  2X3H A;  4OZY A;  3ZSC A;  1O8M A;  4XM3 A;  4AVZ A;  3VSV A;  1K5C A;  2PEC A;  4XQF A;  3FY3 A;  4I84 A;  4YZA A;  2INU A;  4NK8 A;  4W8T A;  3SUC A;  2X6Y A;  5C1C A;  1XG2 A;  3VMW A;  2NSP A;  2X85 A;  1O8G A;  4YEL A;  2QY1 A;  4Z03 A;  4OJ6 A;  1O8J A;  4C2L A;  1IA5 A;  4W8R A;  4XKW A;  3WWG A;  5AMV A;  2UVE A;  2IQ7 A;  3GQ9 A;  5C1E A;  3VST A;  4XN3 A;  1AIR A;  2INV A;  3VSU A;  3LMW A;  1OOC A;  4OJP A;  4XLF A;  4XLE A;  1GQ8 A;  4PMH A;  1QCX A;  2VJJ A;  1IB4 A;  1RU4 A;  3B8Y A;  2O0V A;  2X6W A;  3KRG A;  4MR0 A;  4NK6 A;  4URR A;  4XL9 A;  4XON A;  1NHC A;  4W8S A;  2O04 A;  2Z8G A;  4XR6 A;  2VBK A;  3GQ7 A;  4XLC A;  1PXZ A;  1O8E A;  1JTA A;  1QJV A;  4OJO A;  1BN8 A;  3JUR A;  2NTQ A;  2UVF A;  4HWV A;  1O88 A;  1DBG A;  1OFL A;  2O17 A;  3UW0 A;  4YZ0 A;  1HG8 A;  3EQN A;  3ZPP A;  4MXN A;  1OGM X;  2ODL A;  1RWR A;  4XOP A;  4XNF A;  1VBL A;  2O0W A;  1KCC A;  4OZZ A;  2NZM A;  2VBM A;  4XN0 A;  4OJ5 A;  3B4N A;  2EWE A;  4XKV A;  2BSP A;  1CZF A;  1IDJ A;  1KCD A;  2QXZ A;  3GQ8 A;  2PYH A;  2O1D A;  1DBO A;  2VJI A;  1O8H A;  1O8I A;  4YZQ A; 
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