2O0VA

Pectate lyase bound to hexasaccharide compound iii
Total Genus 158
50100150200250300350020406080100120140160
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
source organism Bacillus subtilis
publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
pubmed doi rcsb
molecule keywords Pectate lyase
total genus 158
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2o0vA00
3EQOA 3GQAA 4Z06A 2O1DA 4OJ5A 4YELA 3VMVA 2BSPA 3B8YA 4OZZA 1RU4A 3VMWA 4OZYA 2NSPA 4W8RA 1NHCA 1O8MA 1OGMX 1JRGA 1BHEA 4XL9A 3EQNA 1O8LA 1OFLA 1KCCA 4XN3A 1IA5A 4OJ6A 4HWVA 2PYHA 4PMHA 2IQ7A 1QCXA 2QXZA 4XLHA 4YZXA 1OFMA 4XOTA 2Z8GA 4YZ0A 4OJPA 1PXZA 1IB4A 4URRA 1OOCA 3GRHA 3KRGA 2UVEA 4XKVA 5AMVA 3ZPPA 3LMWA 1O8FA 2X3HA 4OJOA 3WWGA 2X6XA 2QY1A 4NK8A 1X0CA 4XLAA 2QX3A 3JURA 3SUCA 2PYGA 3ZSCA 4W8TA 4MR0A 4XOPA 3T9GA 1O8IA 4XLEA 4MXNA 4XONA 1OGOX 1BN8A 1O8EA 1O8GA 3B4NA 2X6WA 3VSVA 4XLFA 2NTBA 2INVA 4C2LA 1WMRA 2VBEA 2VJJA 1K5CA 1H80A 4XORA 4W8QA 3FY3A 1HG8A 1O8HA 2PECA 1QJVA 1GQ8A 3VSTA 2EWEA 4NK6A 1CZFA 4U49A 2VBKA 5C1EA 2INUA 1O8JA 3B90A 1KCDA 4XMYA 1AIRA 2NT9A 3GQ8A 4XKWA 1XG2A 2X6YA 4XM3A 4OJLA 4XR6A 4U4BA 4XQFA 1PE9A 4XNFA 2VBMA 5C1CA 1VBLA 1IDKA 4Z05A 2NTPA 3VSUA 1PLUA 1IDJA 1KTWA 2O17A 3UW0A 1EE6A 4Z03A 1RWRA 1DBOA 1RMGA 1JTAA 1DBGA 4YZQA 2NSTA 1O8DA 4YEJA 2NT6A 4W8SA 2O04A 2O0WA 3GQ7A 2X85A 1O88A 4YZAA 1O8KA 2NTQA 4I84A 2VJIA 2ODLA 4EW9A 2O0VA 4AVZA 2NZMA 4XN0A 3GQ9A 2UVFA 4XLCA
chains in the Genus database with same CATH superfamily
3EQOA 3GQAA 3P4GA 4Z06A 2O1DA 4OJ5A 4YELA 3VMVA 2BM7A 2BSPA 3B8YA 3SQVA 2XTWA 2B0RA 2J8KA 3BH7B 4OZZA 1RU4A 3VMWA 4OZYA 2NSPA 4W8RA 1NHCA 1O8MA 1OGMX 1JRGA 1BHEA 2W7ZA 4XL9A 3EQNA 3SYJA 1O8LA 1OFLA 2F3LA 3PSZA 1KCCA 3ML3A 1LM1A 4XN3A 1IA5A 4OJ6A 4HWVA 1EZGA 2PYHA 4PMHA 4YC5A 2IQ7A 5JLVC 1QCXA 3PSSA 1QRBA 2BM6A 4YFOA 4OPWA 2QXZA 2J8IA 4XLHA 1OFMA 4XOTA 4YZXA 2Z8GA 4YZ0A 4OJPA 1PXZA 2VFNA 1DABA 1IB4A 2VFOA 4URRA 3TH0A 1OOCA 3DU1X 1OFEA 3GRHA 3KRGA 3AK5A 2UVEA 4XKVA 5AMVA 3ZPPA 3JX8A 1L1IA 3LMWA 1O8FA 2X3HA 4OM9A 2XTYA 1KQ5A 4OJOA 3WWGA 3LYCA 2X6XA 1OFDA 2QY1A 4NK8A 1X0CA 4XLAA 2IOUG 2QX3A 1TYWA 3NAWA 1QA1A 3JURA 3SUCA 4JRAC 2XC1A 2PYGA 2V5IA 2YUHA 3ZSCA 1QQ1A 4MR0A 4W8TA 4XOPA 1O8IA 2O6WA 3NB2A 4XLEA 4MXNA 3T9GA 4XONA 1OGOX 1BN8A 1O8EA 1O8GA 3B4NA 4YDTA 2X6WA 4YCQA 3VSVA 4XLFA 2NTBA 2INVA 2QYUA 3LJYA 4C2LA 1WMRA 2VBEA 1HF2A 1TSPA 3PETA 2VJJA 1K5CA 1H80A 3N6ZA 4XORA 4W8QA 3FY3A 1HG8A 1O8HA 2BM4A 2QZAA 1TYUA 2PECA 1QJVA 1GQ8A 1LLWA 2EWEA 4KH3A 4NK6A 1CZFA 3VSTA 3N90A 4U49A 2VBKA 5C1EA 2INUA 4V02C 1O8JA 3B90A 1KCDA 1K8FA 2G0YA 4XMYA 3RIQA 1AIRA 2NT9A 3GQ8A 1TYVA 3H09A 4XKWA 1QRCA 1QA2A 5JMCB 1XG2A 2X6YA 4XM3A 4OJLA 4XR6A 3SZEA 2XT2A 4U4BA 4XQFA 1PE9A 2VFMA 4XNFA 1LLZA 2VBMA 5C1CA 1VBLA 1IDKA 4Z05A 2NTPA 3VSUA 3BH6B 1PLUA 1IDJA 2BM5A 1KTWA 2O17A 5DNSA 3UW0A 1EE6A 4Z03A 2BX6A 1RWRA 1DBOA 1RMGA 4YEIA 1JTAA 1DBGA 4YZQA 2NSTA 1O8DA 4YEJA 2NT6A 4W8SA 1QA3A 2O04A 2UVFA 3GQ7A 3SY2A 2X85A 2XT4A 2VFPA 1K4ZA 1O88A 4YZAA 1O8KA 2NTQA 4I84A 2VFQA 2VJIA 1EA0A 2ODLA 4EW9A 2O0VA 1WXRA 1TYXA 2XTXA 4AVZA 2NZMA 1CLWA 4XN0A 3GQ9A 2O0WA 4XLCA
chains in the Genus database with same CATH topology
3EQOA 3GQAA 4Z06A 2O1DA 4OJ5A 4YELA 3VMVA 2BSPA 3B8YA 4OZZA 1RU4A 3VMWA 4OZYA 2NSPA 4W8RA 1NHCA 1O8MA 1OGMX 1JRGA 1BHEA 4XL9A 3EQNA 1O8LA 1OFLA 1KCCA 4XN3A 1IA5A 4OJ6A 4HWVA 2PYHA 4PMHA 2IQ7A 1QCXA 2QXZA 4XLHA 4YZXA 1OFMA 4XOTA 2Z8GA 4YZ0A 4OJPA 1PXZA 1IB4A 4URRA 1OOCA 3GRHA 3KRGA 2UVEA 4XKVA 5AMVA 3ZPPA 3LMWA 1O8FA 2X3HA 4OJOA 3WWGA 2X6XA 2QY1A 4NK8A 1X0CA 4XLAA 2QX3A 3JURA 3SUCA 2PYGA 3ZSCA 4W8TA 4MR0A 4XOPA 3T9GA 1O8IA 4XLEA 4MXNA 4XONA 1OGOX 1BN8A 1O8EA 1O8GA 3B4NA 2X6WA 3VSVA 4XLFA 2NTBA 2INVA 4C2LA 1WMRA 2VBEA 2VJJA 1K5CA 1H80A 4XORA 4W8QA 3FY3A 1HG8A 1O8HA 2PECA 1QJVA 1GQ8A 3VSTA 2EWEA 4NK6A 1CZFA 4U49A 2VBKA 5C1EA 2INUA 1O8JA 3B90A 1KCDA 4XMYA 1AIRA 2NT9A 3GQ8A 4XKWA 1XG2A 2X6YA 4XM3A 4OJLA 4XR6A 4U4BA 4XQFA 1PE9A 4XNFA 2VBMA 5C1CA 1VBLA 1IDKA 4Z05A 2NTPA 3VSUA 1PLUA 1IDJA 1KTWA 2O17A 3UW0A 1EE6A 4Z03A 1RWRA 1DBOA 1RMGA 1JTAA 1DBGA 4YZQA 2NSTA 1O8DA 4YEJA 2NT6A 4W8SA 2O04A 2O0WA 3GQ7A 2X85A 1O88A 4YZAA 1O8KA 2NTQA 4I84A 2VJIA 2ODLA 4EW9A 2O0VA 4AVZA 2NZMA 4XN0A 3GQ9A 2UVFA 4XLCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EQO A;  3GQA A;  4Z06 A;  2O1D A;  4OJ5 A;  4YEL A;  3VMV A;  2BSP A;  3B8Y A;  4OZZ A;  1RU4 A;  3VMW A;  4OZY A;  2NSP A;  4W8R A;  1NHC A;  1O8M A;  1OGM X;  1JRG A;  1BHE A;  4XL9 A;  3EQN A;  1O8L A;  1OFL A;  1KCC A;  4XN3 A;  1IA5 A;  4OJ6 A;  4HWV A;  2PYH A;  4PMH A;  2IQ7 A;  1QCX A;  2QXZ A;  4XLH A;  4YZX A;  1OFM A;  4XOT A;  2Z8G A;  4YZ0 A;  4OJP A;  1PXZ A;  1IB4 A;  4URR A;  1OOC A;  3GRH A;  3KRG A;  2UVE A;  4XKV A;  5AMV A;  3ZPP A;  3LMW A;  1O8F A;  2X3H A;  4OJO A;  3WWG A;  2X6X A;  2QY1 A;  4NK8 A;  1X0C A;  4XLA A;  2QX3 A;  3JUR A;  3SUC A;  2PYG A;  3ZSC A;  4W8T A;  4MR0 A;  4XOP A;  3T9G A;  1O8I A;  4XLE A;  4MXN A;  4XON A;  1OGO X;  1BN8 A;  1O8E A;  1O8G A;  3B4N A;  2X6W A;  3VSV A;  4XLF A;  2NTB A;  2INV A;  4C2L A;  1WMR A;  2VBE A;  2VJJ A;  1K5C A;  1H80 A;  4XOR A;  4W8Q A;  3FY3 A;  1HG8 A;  1O8H A;  2PEC A;  1QJV A;  1GQ8 A;  3VST A;  2EWE A;  4NK6 A;  1CZF A;  4U49 A;  2VBK A;  5C1E A;  2INU A;  1O8J A;  3B90 A;  1KCD A;  4XMY A;  1AIR A;  2NT9 A;  3GQ8 A;  4XKW A;  1XG2 A;  2X6Y A;  4XM3 A;  4OJL A;  4XR6 A;  4U4B A;  4XQF A;  1PE9 A;  4XNF A;  2VBM A;  5C1C A;  1VBL A;  1IDK A;  4Z05 A;  2NTP A;  3VSU A;  1PLU A;  1IDJ A;  1KTW A;  2O17 A;  3UW0 A;  1EE6 A;  4Z03 A;  1RWR A;  1DBO A;  1RMG A;  1JTA A;  1DBG A;  4YZQ A;  2NST A;  1O8D A;  4YEJ A;  2NT6 A;  4W8S A;  2O04 A;  2O0W A;  3GQ7 A;  2X85 A;  1O88 A;  4YZA A;  1O8K A;  2NTQ A;  4I84 A;  2VJI A;  2ODL A;  4EW9 A;  2O0V A;  4AVZ A;  2NZM A;  4XN0 A;  3GQ9 A;  2UVF A;  4XLC A; 
#chains in the Genus database with same CATH topology
 3EQO A;  3GQA A;  3P4G A;  4Z06 A;  2O1D A;  4OJ5 A;  4YEL A;  3VMV A;  2BM7 A;  2BSP A;  3B8Y A;  3SQV A;  2XTW A;  2B0R A;  2J8K A;  3BH7 B;  4OZZ A;  1RU4 A;  3VMW A;  4OZY A;  2NSP A;  4W8R A;  1NHC A;  1O8M A;  1OGM X;  1JRG A;  1BHE A;  2W7Z A;  4XL9 A;  3EQN A;  3SYJ A;  1O8L A;  1OFL A;  2F3L A;  3PSZ A;  1KCC A;  3ML3 A;  1LM1 A;  4XN3 A;  1IA5 A;  4OJ6 A;  4HWV A;  1EZG A;  2PYH A;  4PMH A;  4YC5 A;  2IQ7 A;  5JLV C;  1QCX A;  3PSS A;  1QRB A;  2BM6 A;  4YFO A;  4OPW A;  2QXZ A;  2J8I A;  4XLH A;  1OFM A;  4XOT A;  4YZX A;  2Z8G A;  4YZ0 A;  4OJP A;  1PXZ A;  2VFN A;  1DAB A;  1IB4 A;  2VFO A;  4URR A;  3TH0 A;  1OOC A;  3DU1 X;  1OFE A;  3GRH A;  3KRG A;  3AK5 A;  2UVE A;  4XKV A;  5AMV A;  3ZPP A;  3JX8 A;  1L1I A;  3LMW A;  1O8F A;  2X3H A;  4OM9 A;  2XTY A;  1KQ5 A;  4OJO A;  3WWG A;  3LYC A;  2X6X A;  1OFD A;  2QY1 A;  4NK8 A;  1X0C A;  4XLA A;  2IOU G;  2QX3 A;  1TYW A;  3NAW A;  1QA1 A;  3JUR A;  3SUC A;  4JRA C;  2XC1 A;  2PYG A;  2V5I A;  2YUH A;  3ZSC A;  1QQ1 A;  4MR0 A;  4W8T A;  4XOP A;  1O8I A;  2O6W A;  3NB2 A;  4XLE A;  4MXN A;  3T9G A;  4XON A;  1OGO X;  1BN8 A;  1O8E A;  1O8G A;  3B4N A;  4YDT A;  2X6W A;  4YCQ A;  3VSV A;  4XLF A;  2NTB A;  2INV A;  2QYU A;  3LJY A;  4C2L A;  1WMR A;  2VBE A;  1HF2 A;  1TSP A;  3PET A;  2VJJ A;  1K5C A;  1H80 A;  3N6Z A;  4XOR A;  4W8Q A;  3FY3 A;  1HG8 A;  1O8H A;  2BM4 A;  2QZA A;  1TYU A;  2PEC A;  1QJV A;  1GQ8 A;  1LLW A;  2EWE A;  4KH3 A;  4NK6 A;  1CZF A;  3VST A;  3N90 A;  4U49 A;  2VBK A;  5C1E A;  2INU A;  4V02 C;  1O8J A;  3B90 A;  1KCD A;  1K8F A;  2G0Y A;  4XMY A;  3RIQ A;  1AIR A;  2NT9 A;  3GQ8 A;  1TYV A;  3H09 A;  4XKW A;  1QRC A;  1QA2 A;  5JMC B;  1XG2 A;  2X6Y A;  4XM3 A;  4OJL A;  4XR6 A;  3SZE A;  2XT2 A;  4U4B A;  4XQF A;  1PE9 A;  2VFM A;  4XNF A;  1LLZ A;  2VBM A;  5C1C A;  1VBL A;  1IDK A;  4Z05 A;  2NTP A;  3VSU A;  3BH6 B;  1PLU A;  1IDJ A;  2BM5 A;  1KTW A;  2O17 A;  5DNS A;  3UW0 A;  1EE6 A;  4Z03 A;  2BX6 A;  1RWR A;  1DBO A;  1RMG A;  4YEI A;  1JTA A;  1DBG A;  4YZQ A;  2NST A;  1O8D A;  4YEJ A;  2NT6 A;  4W8S A;  1QA3 A;  2O04 A;  2UVF A;  3GQ7 A;  3SY2 A;  2X85 A;  2XT4 A;  2VFP A;  1K4Z A;  1O88 A;  4YZA A;  1O8K A;  2NTQ A;  4I84 A;  2VFQ A;  2VJI A;  1EA0 A;  2ODL A;  4EW9 A;  2O0V A;  1WXR A;  1TYX A;  2XTX A;  4AVZ A;  2NZM A;  1CLW A;  4XN0 A;  3GQ9 A;  2O0W A;  4XLC A; 
#chains in the Genus database with same CATH homology
 3EQO A;  3GQA A;  4Z06 A;  2O1D A;  4OJ5 A;  4YEL A;  3VMV A;  2BSP A;  3B8Y A;  4OZZ A;  1RU4 A;  3VMW A;  4OZY A;  2NSP A;  4W8R A;  1NHC A;  1O8M A;  1OGM X;  1JRG A;  1BHE A;  4XL9 A;  3EQN A;  1O8L A;  1OFL A;  1KCC A;  4XN3 A;  1IA5 A;  4OJ6 A;  4HWV A;  2PYH A;  4PMH A;  2IQ7 A;  1QCX A;  2QXZ A;  4XLH A;  4YZX A;  1OFM A;  4XOT A;  2Z8G A;  4YZ0 A;  4OJP A;  1PXZ A;  1IB4 A;  4URR A;  1OOC A;  3GRH A;  3KRG A;  2UVE A;  4XKV A;  5AMV A;  3ZPP A;  3LMW A;  1O8F A;  2X3H A;  4OJO A;  3WWG A;  2X6X A;  2QY1 A;  4NK8 A;  1X0C A;  4XLA A;  2QX3 A;  3JUR A;  3SUC A;  2PYG A;  3ZSC A;  4W8T A;  4MR0 A;  4XOP A;  3T9G A;  1O8I A;  4XLE A;  4MXN A;  4XON A;  1OGO X;  1BN8 A;  1O8E A;  1O8G A;  3B4N A;  2X6W A;  3VSV A;  4XLF A;  2NTB A;  2INV A;  4C2L A;  1WMR A;  2VBE A;  2VJJ A;  1K5C A;  1H80 A;  4XOR A;  4W8Q A;  3FY3 A;  1HG8 A;  1O8H A;  2PEC A;  1QJV A;  1GQ8 A;  3VST A;  2EWE A;  4NK6 A;  1CZF A;  4U49 A;  2VBK A;  5C1E A;  2INU A;  1O8J A;  3B90 A;  1KCD A;  4XMY A;  1AIR A;  2NT9 A;  3GQ8 A;  4XKW A;  1XG2 A;  2X6Y A;  4XM3 A;  4OJL A;  4XR6 A;  4U4B A;  4XQF A;  1PE9 A;  4XNF A;  2VBM A;  5C1C A;  1VBL A;  1IDK A;  4Z05 A;  2NTP A;  3VSU A;  1PLU A;  1IDJ A;  1KTW A;  2O17 A;  3UW0 A;  1EE6 A;  4Z03 A;  1RWR A;  1DBO A;  1RMG A;  1JTA A;  1DBG A;  4YZQ A;  2NST A;  1O8D A;  4YEJ A;  2NT6 A;  4W8S A;  2O04 A;  2O0W A;  3GQ7 A;  2X85 A;  1O88 A;  4YZA A;  1O8K A;  2NTQ A;  4I84 A;  2VJI A;  2ODL A;  4EW9 A;  2O0V A;  4AVZ A;  2NZM A;  4XN0 A;  3GQ9 A;  2UVF A;  4XLC A; 
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