2O6W | Genus

Total Genus 56

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	56
sequence length	150
structure length	147
Chain Sequence	AMTNNLYRLELERECVGCNLEGVNLPRENFGLKYRIPSPLVTTPFGMDKAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLSETDLENAILIGANLQGANLENANLQGANLENANLRGAILTGVNLEETHLKGIETDKNTVWD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Unknown function
source organism	Cyanothece
publication title	Insights into the structural variation between pentapeptide repeat proteins-Crystal structure of Rfr23 from Cyanothece 51142. pubmed doi rcsb
molecule keywords	Repeat Five Residue (Rfr) protein or pentapeptide repeat pro
total genus	56
structure length	147
sequence length	150
ec nomenclature
pdb deposition date	2006-12-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00805	Pentapeptide	Pentapeptide repeats (8 copies)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.160.20.80	Mainly Beta	3 Solenoid	Pectate Lyase C-like	E3 ubiquitin-protein ligase SopA	2o6wA01

2O6WA 4YCQA 3SQVA 2J8KA 2XTXA 5DNSA 4YEIA 4YDTA 2XT4A 2QZAA 2QYUA 2XTYA 3NB2A 2XTWA 4YC5A 3DU1X 4YFOA 3NAWA 2XT2A 3SY2A 3PSZA 3PSSA
chains in the Genus database with same CATH superfamily

3AK5A 4XMYA 3BH7B 3UW0A 4OPWA 2W7ZA 3JURA 1O8FA 1DBGA 4PMHA 1OGOX 2IQ7A 4XLHA 3SQVA 2O17A 1DBOA 2Z8GA 1RU4A 4YEIA 1HF2A 1QRCA 4V02C 4XOTA 3N6ZA 5C1EA 4W8QA 2BM6A 1O8KA 4OJLA 5JLVC 4JRAC 2O0VA 4YZAA 3JX8A 2NSTA 3KRGA 1KCDA 1QRBA 2O04A 1BN8A 2PYHA 4XNFA 1QA2A 2BM7A 2VJJA 2BM4A 4W8SA 1WXRA 4XLAA 3LYCA 3B8YA 1JTAA 1TYWA 1EZGA 3EQOA 3N90A 4YZQA 1NHCA 1KQ5A 4OJ5A 1PE9A 4OJ6A 1OFMA 1QQ1A 1K8FA 3PSZA 1O8JA 4C2LA 3GRHA 1TSPA 1PXZA 4KH3A 4EW9A 2O6WA 2X3HA 4YZXA 3GQ9A 4XKVA 3GQ7A 3VSVA 3B4NA 3H09A 1IDJA 2NTPA 2O1DA 1QJVA 2QY1A 1X0CA 1O8DA 3LJYA 1EA0A 2X6YA 2X6XA 2QZAA 4URRA 4XN0A 3ML3A 4XLCA 1CZFA 4XKWA 1LLZA 2G0YA 4NK8A 3VMWA 1OOCA 1O8EA 3SYJA 1PLUA 2IOUG 1CLWA 4I84A 1TYUA 3SZEA 2INVA 2PECA 1BHEA 1OFLA 4Z05A 2UVEA 3TH0A 2F3LA 1O8IA 1O8GA 4U49A 3NAWA 2XT2A 3SUCA 3PSSA 1XG2A 3EQNA 1IDKA 3P4GA 4OJPA 1TYXA 2PYGA 2XC1A 4XLEA 5AMVA 1AIRA 4MR0A 1RMGA 2O0WA 4XR6A 1O8HA 1O8MA 2VFMA 4Z06A 2X85A 2J8KA 2QXZA 2XTXA 3B90A 4OM9A 4OZZA 4YELA 5DNSA 3ZPPA 1EE6A 1HG8A 2NSPA 1JRGA 3GQAA 2BM5A 2QYUA 2VBMA 1DABA 3VSUA 4NK6A 3FY3A 2XTYA 4XL9A 4W8RA 3VSTA 1IB4A 1K5CA 1KCCA 2VBKA 2EWEA 2XTWA 5C1CA 1O88A 1GQ8A 1KTWA 1RWRA 2J8IA 4XM3A 4YFOA 3SY2A 2VFNA 1K4ZA 4OJOA 3T9GA 1O8LA 4XQFA 4OZYA 2ODLA 1OFDA 4HWVA 4XORA 4YCQA 2V5IA 3BH6B 4XOPA 4XONA 2INUA 4YEJA 4XN3A 1H80A 2B0RA 4U4BA 2BSPA 2UVFA 4YDTA 3PETA 1QA3A 4XLFA 1VBLA 2NT6A 2XT4A 2NT9A 1LLWA 2NTQA 2VFQA 3WWGA 1QA1A 2VFOA 2X6WA 4AVZA 1OGMX 1WMRA 1LM1A 5JMCB 3NB2A 3RIQA 2QX3A 2NTBA 4YZ0A 4W8TA 4YC5A 2NZMA 1TYVA 2VFPA 3DU1X 2BX6A 3GQ8A 2VJIA 3ZSCA 3LMWA 1QCXA 4MXNA 1IA5A 1L1IA 2VBEA 2YUHA 3VMVA 4Z03A 1OFEA
chains in the Genus database with same CATH topology

2O6WA 4YCQA 3SQVA 2J8KA 2XTXA 5DNSA 4YEIA 4YDTA 2XT4A 2QZAA 2QYUA 2XTYA 3NB2A 2XTWA 4YC5A 3DU1X 4YFOA 3NAWA 2XT2A 3SY2A 3PSZA 3PSSA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2O6W A;  4YCQ A;  3SQV A;  2J8K A;  2XTX A;  5DNS A;  4YEI A;  4YDT A;  2XT4 A;  2QZA A;  2QYU A;  2XTY A;  3NB2 A;  2XTW A;  4YC5 A;  3DU1 X;  4YFO A;  3NAW A;  2XT2 A;  3SY2 A;  3PSZ A;  3PSS A; 
#chains in the Genus database with same CATH topology
 3AK5 A;  4XMY A;  3BH7 B;  3UW0 A;  4OPW A;  2W7Z A;  3JUR A;  1O8F A;  1DBG A;  4PMH A;  1OGO X;  2IQ7 A;  4XLH A;  3SQV A;  2O17 A;  1DBO A;  2Z8G A;  1RU4 A;  4YEI A;  1HF2 A;  1QRC A;  4V02 C;  4XOT A;  3N6Z A;  5C1E A;  4W8Q A;  2BM6 A;  1O8K A;  4OJL A;  5JLV C;  4JRA C;  2O0V A;  4YZA A;  3JX8 A;  2NST A;  3KRG A;  1KCD A;  1QRB A;  2O04 A;  1BN8 A;  2PYH A;  4XNF A;  1QA2 A;  2BM7 A;  2VJJ A;  2BM4 A;  4W8S A;  1WXR A;  4XLA A;  3LYC A;  3B8Y A;  1JTA A;  1TYW A;  1EZG A;  3EQO A;  3N90 A;  4YZQ A;  1NHC A;  1KQ5 A;  4OJ5 A;  1PE9 A;  4OJ6 A;  1OFM A;  1QQ1 A;  1K8F A;  3PSZ A;  1O8J A;  4C2L A;  3GRH A;  1TSP A;  1PXZ A;  4KH3 A;  4EW9 A;  2O6W A;  2X3H A;  4YZX A;  3GQ9 A;  4XKV A;  3GQ7 A;  3VSV A;  3B4N A;  3H09 A;  1IDJ A;  2NTP A;  2O1D A;  1QJV A;  2QY1 A;  1X0C A;  1O8D A;  3LJY A;  1EA0 A;  2X6Y A;  2X6X A;  2QZA A;  4URR A;  4XN0 A;  3ML3 A;  4XLC A;  1CZF A;  4XKW A;  1LLZ A;  2G0Y A;  4NK8 A;  3VMW A;  1OOC A;  1O8E A;  3SYJ A;  1PLU A;  2IOU G;  1CLW A;  4I84 A;  1TYU A;  3SZE A;  2INV A;  2PEC A;  1BHE A;  1OFL A;  4Z05 A;  2UVE A;  3TH0 A;  2F3L A;  1O8I A;  1O8G A;  4U49 A;  3NAW A;  2XT2 A;  3SUC A;  3PSS A;  1XG2 A;  3EQN A;  1IDK A;  3P4G A;  4OJP A;  1TYX A;  2PYG A;  2XC1 A;  4XLE A;  5AMV A;  1AIR A;  4MR0 A;  1RMG A;  2O0W A;  4XR6 A;  1O8H A;  1O8M A;  2VFM A;  4Z06 A;  2X85 A;  2J8K A;  2QXZ A;  2XTX A;  3B90 A;  4OM9 A;  4OZZ A;  4YEL A;  5DNS A;  3ZPP A;  1EE6 A;  1HG8 A;  2NSP A;  1JRG A;  3GQA A;  2BM5 A;  2QYU A;  2VBM A;  1DAB A;  3VSU A;  4NK6 A;  3FY3 A;  2XTY A;  4XL9 A;  4W8R A;  3VST A;  1IB4 A;  1K5C A;  1KCC A;  2VBK A;  2EWE A;  2XTW A;  5C1C A;  1O88 A;  1GQ8 A;  1KTW A;  1RWR A;  2J8I A;  4XM3 A;  4YFO A;  3SY2 A;  2VFN A;  1K4Z A;  4OJO A;  3T9G A;  1O8L A;  4XQF A;  4OZY A;  2ODL A;  1OFD A;  4HWV A;  4XOR A;  4YCQ A;  2V5I A;  3BH6 B;  4XOP A;  4XON A;  2INU A;  4YEJ A;  4XN3 A;  1H80 A;  2B0R A;  4U4B A;  2BSP A;  2UVF A;  4YDT A;  3PET A;  1QA3 A;  4XLF A;  1VBL A;  2NT6 A;  2XT4 A;  2NT9 A;  1LLW A;  2NTQ A;  2VFQ A;  3WWG A;  1QA1 A;  2VFO A;  2X6W A;  4AVZ A;  1OGM X;  1WMR A;  1LM1 A;  5JMC B;  3NB2 A;  3RIQ A;  2QX3 A;  2NTB A;  4YZ0 A;  4W8T A;  4YC5 A;  2NZM A;  1TYV A;  2VFP A;  3DU1 X;  2BX6 A;  3GQ8 A;  2VJI A;  3ZSC A;  3LMW A;  1QCX A;  4MXN A;  1IA5 A;  1L1I A;  2VBE A;  2YUH A;  3VMV A;  4Z03 A;  1OFE A; 
#chains in the Genus database with same CATH homology
 2O6W A;  4YCQ A;  3SQV A;  2J8K A;  2XTX A;  5DNS A;  4YEI A;  4YDT A;  2XT4 A;  2QZA A;  2QYU A;  2XTY A;  3NB2 A;  2XTW A;  4YC5 A;  3DU1 X;  4YFO A;  3NAW A;  2XT2 A;  3SY2 A;  3PSZ A;  3PSS A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2O6WA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations